Update README.md

README.md

@@ -1,3 +1,15 @@
+---
+license: apache-2.0
+tags:
+- ppi
+- proteins
+- biology
+- bacteria
+- stringdb
+pretty_name: Dataset for predicting protein-protein interactions in bacterial genomes
+size_categories:
+- 10K<n<100K
+---
 # Dataset for protein-protein interaction prediction across bacteria (Protein sequences)
 
 A dataset of 10,533 bacterial genomes across 6,956 species with protein-protein interaction (PPI) scores for each genome.
@@ -27,13 +39,13 @@ prot_seqs = item["protein_sequences"]
 ppi_triples = item["triples_combined_score"]
 
 # get protein seqs and label for one pair of proteins
-prot1 = prot_seqs[ppi_triples[0]]
-prot2 = prot_seqs[ppi_triples[1]]
-score = ppi_triples[2] / 1000
+prot1 = prot_seqs[ppi_triples[0][0]]
+prot2 = prot_seqs[ppi_triples[0][1]]
+score = ppi_triples[0][2] / 1000
 
 # we recommend binarizing the labels based on the threshold of 0.6
 binary_ppi_triples = [
-  (prot1_index, prot2_index, (score / 1000) >= 0.6) for prot1_index, prot2_index, score in ppi_triples
+  (prot1_index, prot2_index, int((score / 1000) >= 0.6)) for prot1_index, prot2_index, score in ppi_triples
 ]
 ```
 
@@ -81,4 +93,4 @@ configs:
     path: data/validation-*
   - split: test
     path: data/test-*
----
+---