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README.md
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- name: {feature_name_2} # Example: image
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dtype: {feature_dtype_2} # Example: image
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---
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-
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- name: {feature_name_2} # Example: image
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dtype: {feature_dtype_2} # Example: image
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---
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# Blood-Brain Barrier Database (B3DB)
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The [Blood-Brain Barrier Database (B3DB)](https://www.nature.com/articles/s41597-021-01069-5)
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is a large benchmark dataset compiled from 50 published resources
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(as summarized at raw_data/raw_data_summary.tsv) and categorized based on the consistency between
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different experimental references/measurements. This dataset was
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[published in Scientific Data](https://www.nature.com/articles/s41597-021-01069-5) and
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a mirror of the [theochem/B3DB](https://github.com/theochem/B3DB) the official Github repo where it is
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occasionally uploaded with new experimental data. Scientists who would like
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to contribute data should contact the database's maintainers (e.g., by creating a
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[new Issue](https://github.com/theochem/B3DB/issues) in the database).
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A subset of the molecules in B3DB has numerical `logBB` values (1058 compounds),
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while the whole dataset has categorical (`BBB+` or `BBB-`) BBB permeability labels
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(7807 compounds). Some physicochemical properties of the molecules are also provided.
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## Citation
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Please use the following citation in any publication using our *B3DB* dataset:
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```md
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@article{Meng_A_curated_diverse_2021,
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author = {Meng, Fanwang and Xi, Yang and Huang, Jinfeng and Ayers, Paul W.},
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doi = {10.1038/s41597-021-01069-5},
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journal = {Scientific Data},
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number = {289},
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title = {A curated diverse molecular database of blood-brain barrier permeability with chemical descriptors},
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volume = {8},
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year = {2021},
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url = {https://www.nature.com/articles/s41597-021-01069-5},
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publisher = {Springer Nature}
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}
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```
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## Features of *B3DB*
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1. The largest dataset with numerical and categorical values for Blood-Brain Barrier small molecules
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(to the best of our knowledge, as of February 25, 2021).
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2. Inclusion of stereochemistry information with isomeric SMILES with chiral specifications if
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available. Otherwise, canonical SMILES are used.
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3. Characterization of uncertainty of experimental measurements by grouping the collected molecular
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data records.
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4. Extended datasets for numerical and categorical data with precomputed physicochemical properties
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using [mordred](https://github.com/mordred-descriptor/mordred).
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