used existing split rather than MolFlux splitting
Browse files
README.md
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@@ -143,27 +143,20 @@ First, from the command line, install `MolFlux` library with `catboost` and `rdk
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then load, featurize, split, fit, and evaluate the a catboost model
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import json
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from
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from molflux.features import load_from_dicts as load_representations_from_dicts
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from molflux.splits import load_from_dict as load_split_from_dict
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from molflux.modelzoo import load_from_dict as load_model_from_dict
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from molflux.metrics import load_suite
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column = "SMILES",
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representations = load_representations_from_dicts([{"name": "morgan"}, {"name": "maccs_rdkit"}]))
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shuffle_strategy = load_split_from_dict({
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"name": "shuffle_split",
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"presets": {
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"train_fraction": 0.8,
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"validation_fraction": 0.0,
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"test_fraction": 0.2}})
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split_featurised_dataset = next(split_dataset(featurised_dataset, shuffle_strategy))
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model = load_model_from_dict({
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"name": "cat_boost_classifier",
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"config": {
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then load, featurize, split, fit, and evaluate the a catboost model
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import json
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from datasets import load_set
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from molflux.datasets import featurise_dataset
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from molflux.features import load_from_dicts as load_representations_from_dicts
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from molflux.splits import load_from_dict as load_split_from_dict
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from molflux.modelzoo import load_from_dict as load_model_from_dict
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from molflux.metrics import load_suite
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split_dataset = load_dataset('maomlab/B3DB', name = 'B3DB_classification')
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split_featurised_dataset = featurise_dataset(
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split_dataset,
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column = "SMILES",
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representations = load_representations_from_dicts([{"name": "morgan"}, {"name": "maccs_rdkit"}]))
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model = load_model_from_dict({
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"name": "cat_boost_classifier",
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"config": {
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