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README.md
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- split: train
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path: CHAFF/train-*
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#
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### List of PubChem AIDs included:
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632, 1641, 1730, 1857, 1926, 435026, 504689, 720541, 1159604,
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587, 588, 589, 590, 591, 592, 593, 594, 709, 923, 1480, 1483, 1696, 1775, 1776, 2124, 2757,
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Standardize and validate 'CanonicalSMILES' column. Apply sanitization, standardization, and fragment removal using RDKit and MolVS.
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### st5_detergent_smiles_curation.py
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Special handling for AIDs
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This ensures non-specific binders (likely aggregators) are excluded.
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- 585 → remove compounds also active in 584
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- 485341 → remove compounds also active in 485294
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- split: train
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path: CHAFF/train-*
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---
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# Dataset description
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### List of PubChem AIDs included:
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632, 1641, 1730, 1857, 1926, 435026, 504689, 720541, 1159604,
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587, 588, 589, 590, 591, 592, 593, 594, 709, 923, 1480, 1483, 1696, 1775, 1776, 2124, 2757,
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Standardize and validate 'CanonicalSMILES' column. Apply sanitization, standardization, and fragment removal using RDKit and MolVS.
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### st5_detergent_smiles_curation.py
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Special handling for AIDs 585, 584, 1476, 1478, 485341, 485294
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These datasets are processed to remove overlapping compounds based on detergent-related assay pairs. (Without detergent - With detergent)
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This ensures non-specific binders (likely aggregators) are excluded.
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- AID 585 → remove compounds also active in AID 584
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- AID 1476 → remove compounds also active in AID 1478
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- AID 485341 → remove compounds also active in AID 485294
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