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[
"Methanoregula",
"formicica",
"sp",
".",
"nov",
".",
",",
"a",
"methane",
"-",
"producing",
"archaeon",
"isolated",
"from",
"methanogenic",
"sludge",
"."
] |
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affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Methanoregula || formicica || sp || . || nov || . || , || a || methane || - || producing || archaeon || isolated || from || methanogenic || sludge || .
Tokens:
|
NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
1
|
[
"A",
"novel",
"methane",
"-",
"producing",
"archaeon",
",",
"strain",
"SMSP",
"(",
"T",
")",
",",
"was",
"isolated",
"from",
"an",
"anaerobic",
",",
"propionate",
"-",
"degrading",
"enrichment",
"culture",
"that",
"was",
"originally",
"obtained",
"from",
"granular",
"sludge",
"in",
"a",
"mesophilic",
"upflow",
"anaerobic",
"sludge",
"blanket",
"(",
"UASB",
")",
"reactor",
"used",
"to",
"treat",
"a",
"beer",
"brewery",
"effluent",
"."
] |
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affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: A || novel || methane || - || producing || archaeon || , || strain || SMSP || ( || T || ) || , || was || isolated || from || an || anaerobic || , || propionate || - || degrading || enrichment || culture || that || was || originally || obtained || from || granular || sludge || in || a || mesophilic || upflow || anaerobic || sludge || blanket || ( || UASB || ) || reactor || used || to || treat || a || beer || brewery || effluent || .
Tokens:
|
None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
2
|
[
"Cells",
"were",
"non",
"-",
"motile",
",",
"blunt",
"-",
"ended",
",",
"straight",
"rods",
",",
"1",
".",
"0",
"-",
"2",
".",
"6",
"mum",
"long",
"by",
"0",
".",
"5",
"mum",
"wide",
";",
"cells",
"were",
"sometimes",
"up",
"to",
"7",
"mum",
"long",
"."
] |
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] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Cells || were || non || - || motile || , || blunt || - || ended || , || straight || rods || , || 1 || . || 0 || - || 2 || . || 6 || mum || long || by || 0 || . || 5 || mum || wide || ; || cells || were || sometimes || up || to || 7 || mum || long || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
3
|
[
"Asymmetrical",
"cell",
"division",
"was",
"observed",
"in",
"rod",
"-",
"shaped",
"cells",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Asymmetrical || cell || division || was || observed || in || rod || - || shaped || cells || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None
|
4
|
[
"Coccoid",
"cells",
"(",
"0",
".",
"5",
"-",
"1",
".",
"0",
"mum",
"in",
"diameter",
")",
"were",
"also",
"observed",
"in",
"mid",
"-",
"to",
"late",
"-",
"exponential",
"phase",
"cultures",
"."
] |
[
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0,
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0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Coccoid || cells || ( || 0 || . || 5 || - || 1 || . || 0 || mum || in || diameter || ) || were || also || observed || in || mid || - || to || late || - || exponential || phase || cultures || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
5
|
[
"Growth",
"was",
"observed",
"between",
"10",
"and",
"40",
"^",
"0C",
"(",
"optimum",
",",
"30",
"-",
"33",
"^",
"0C",
")",
"and",
"pH",
"7",
".",
"0",
"and",
"7",
".",
"6",
"(",
"optimum",
",",
"pH",
"7",
".",
"4",
")",
"."
] |
[
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] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Growth || was || observed || between || 10 || and || 40 || ^ || 0C || ( || optimum || , || 30 || - || 33 || ^ || 0C || ) || and || pH || 7 || . || 0 || and || 7 || . || 6 || ( || optimum || , || pH || 7 || . || 4 || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
6
|
[
"The",
"G",
"+",
"C",
"content",
"of",
"the",
"genomic",
"DNA",
"was",
"56",
".",
"2",
"mol",
"%",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || G || + || C || content || of || the || genomic || DNA || was || 56 || . || 2 || mol || % || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
7
|
[
"The",
"strain",
"utilized",
"formate",
"and",
"hydrogen",
"for",
"growth",
"and",
"methane",
"production",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || strain || utilized || formate || and || hydrogen || for || growth || and || methane || production || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None
|
8
|
[
"Based",
"on",
"comparative",
"sequence",
"analyses",
"of",
"the",
"16S",
"rRNA",
"and",
"mcrA",
"(",
"encoding",
"the",
"alpha",
"subunit",
"of",
"methyl",
"-",
"coenzyme",
"M",
"reductase",
",",
"a",
"key",
"enzyme",
"in",
"the",
"methane",
"-",
"producing",
"pathway",
")",
"genes",
",",
"strain",
"SMSP",
"(",
"T",
")",
"was",
"affiliated",
"with",
"group",
"E1",
"/",
"E2",
"within",
"the",
"order",
"Methanomicrobiales",
"."
] |
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affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Based || on || comparative || sequence || analyses || of || the || 16S || rRNA || and || mcrA || ( || encoding || the || alpha || subunit || of || methyl || - || coenzyme || M || reductase || , || a || key || enzyme || in || the || methane || - || producing || pathway || ) || genes || , || strain || SMSP || ( || T || ) || was || affiliated || with || group || E1 || / || E2 || within || the || order || Methanomicrobiales || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None
|
9
|
[
"The",
"closest",
"relative",
"based",
"on",
"both",
"16S",
"rRNA",
"and",
"mcrA",
"gene",
"sequences",
"was",
"Methanoregula",
"boonei",
"6A8",
"(",
"T",
")",
"(",
"96",
".",
"3",
"%",
"16S",
"rRNA",
"gene",
"sequence",
"similarity",
",",
"85",
".",
"4",
"%",
"deduced",
"McrA",
"amino",
"acid",
"sequence",
"similarity",
")",
"."
] |
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affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || closest || relative || based || on || both || 16S || rRNA || and || mcrA || gene || sequences || was || Methanoregula || boonei || 6A8 || ( || T || ) || ( || 96 || . || 3 || % || 16S || rRNA || gene || sequence || similarity || , || 85 || . || 4 || % || deduced || McrA || amino || acid || sequence || similarity || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
10
|
[
"The",
"percentage",
"of",
"16S",
"rRNA",
"gene",
"sequence",
"similarity",
"indicates",
"that",
"strain",
"SMSP",
"(",
"T",
")",
"and",
"Methanoregula",
"boonei",
"6A8",
"(",
"T",
")",
"represent",
"different",
"species",
"within",
"the",
"same",
"genus",
"."
] |
[
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0,
1,
2,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || percentage || of || 16S || rRNA || gene || sequence || similarity || indicates || that || strain || SMSP || ( || T || ) || and || Methanoregula || boonei || 6A8 || ( || T || ) || represent || different || species || within || the || same || genus || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None
|
11
|
[
"This",
"is",
"supported",
"by",
"our",
"findings",
"of",
"shared",
"phenotypic",
"properties",
",",
"including",
"cell",
"morphology",
"and",
"growth",
"temperature",
"range",
",",
"and",
"phenotypic",
"differences",
"in",
"substrate",
"usage",
"and",
"pH",
"range",
"."
] |
[
0,
0,
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0,
0,
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0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: This || is || supported || by || our || findings || of || shared || phenotypic || properties || , || including || cell || morphology || and || growth || temperature || range || , || and || phenotypic || differences || in || substrate || usage || and || pH || range || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
12
|
[
"Based",
"on",
"these",
"genetic",
"and",
"phenotypic",
"properties",
",",
"we",
"propose",
"that",
"strain",
"SMSP",
"(",
"T",
")",
"represents",
"a",
"novel",
"species",
"of",
"the",
"genus",
"Methanoregula",
",",
"for",
"which",
"we",
"propose",
"the",
"name",
"Methanoregula",
"formicica",
"sp",
".",
"nov",
".",
",",
"with",
"the",
"type",
"strain",
"SMSP",
"(",
"T",
")",
"(",
"=",
"NBRC",
"105244",
"(",
"T",
")",
"=",
"DSM",
"22288",
"(",
"T",
")",
")",
"."
] |
[
0,
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0,
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0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Based || on || these || genetic || and || phenotypic || properties || , || we || propose || that || strain || SMSP || ( || T || ) || represents || a || novel || species || of || the || genus || Methanoregula || , || for || which || we || propose || the || name || Methanoregula || formicica || sp || . || nov || . || , || with || the || type || strain || SMSP || ( || T || ) || ( || = || NBRC || 105244 || ( || T || ) || = || DSM || 22288 || ( || T || ) || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
13
|
[
"Characterizing",
"the",
"role",
"of",
"the",
"microtubule",
"binding",
"protein",
"Bim1",
"in",
"Cryptococcus",
"neoformans",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
1,
2,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Characterizing || the || role || of || the || microtubule || binding || protein || Bim1 || in || Cryptococcus || neoformans || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None
|
14
|
[
"During",
"sexual",
"development",
"the",
"human",
"fungal",
"pathogen",
"Cryptococcus",
"neoformans",
"undergoes",
"a",
"developmental",
"transition",
"from",
"yeast",
"-",
"form",
"growth",
"to",
"filamentous",
"growth",
"."
] |
[
0,
0,
0,
0,
1,
0,
0,
1,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: During || sexual || development || the || human || fungal || pathogen || Cryptococcus || neoformans || undergoes || a || developmental || transition || from || yeast || - || form || growth || to || filamentous || growth || .
Tokens:
|
None || None || None || None || NCBI Taxonomy token || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None
|
15
|
[
"This",
"transition",
"requires",
"cellular",
"restructuring",
"to",
"form",
"a",
"filamentous",
"dikaryon",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: This || transition || requires || cellular || restructuring || to || form || a || filamentous || dikaryon || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None
|
16
|
[
"Dikaryotic",
"growth",
"also",
"requires",
"tightly",
"controlled",
"nuclear",
"migration",
"to",
"ensure",
"faithful",
"replication",
"and",
"dissemination",
"of",
"genetic",
"material",
"to",
"spore",
"progeny",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Dikaryotic || growth || also || requires || tightly || controlled || nuclear || migration || to || ensure || faithful || replication || and || dissemination || of || genetic || material || to || spore || progeny || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
17
|
[
"Although",
"the",
"gross",
"morphological",
"changes",
"that",
"take",
"place",
"during",
"dikaryotic",
"growth",
"are",
"largely",
"known",
",",
"the",
"molecular",
"underpinnings",
"that",
"control",
"this",
"process",
"are",
"uncharacterized",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Although || the || gross || morphological || changes || that || take || place || during || dikaryotic || growth || are || largely || known || , || the || molecular || underpinnings || that || control || this || process || are || uncharacterized || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
18
|
[
"Here",
"we",
"identify",
"and",
"characterize",
"a",
"C",
".",
"neoformans",
"homolog",
"of",
"the",
"Saccharomyces",
"cerevisiae",
"BIM1",
"gene",
",",
"and",
"establish",
"the",
"importance",
"of",
"BIM1",
"for",
"proper",
"filamentous",
"growth",
"of",
"C",
".",
"neoformans",
"."
] |
[
0,
0,
0,
0,
0,
0,
1,
2,
2,
0,
0,
0,
1,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
1,
2,
2,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Here || we || identify || and || characterize || a || C || . || neoformans || homolog || of || the || Saccharomyces || cerevisiae || BIM1 || gene || , || and || establish || the || importance || of || BIM1 || for || proper || filamentous || growth || of || C || . || neoformans || .
Tokens:
|
None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None
|
19
|
[
"Deletion",
"of",
"BIM1",
"leads",
"to",
"truncated",
"sexual",
"development",
"filaments",
",",
"a",
"severe",
"defect",
"in",
"diploid",
"formation",
",",
"and",
"a",
"block",
"in",
"monokaryotic",
"fruiting",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Deletion || of || BIM1 || leads || to || truncated || sexual || development || filaments || , || a || severe || defect || in || diploid || formation || , || and || a || block || in || monokaryotic || fruiting || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
20
|
[
"Our",
"findings",
"lead",
"to",
"a",
"model",
"consistent",
"with",
"a",
"critical",
"role",
"for",
"BIM1",
"in",
"both",
"filament",
"integrity",
"and",
"nuclear",
"congression",
"that",
"is",
"mediated",
"through",
"the",
"microtubule",
"cytoskeleton",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Our || findings || lead || to || a || model || consistent || with || a || critical || role || for || BIM1 || in || both || filament || integrity || and || nuclear || congression || that || is || mediated || through || the || microtubule || cytoskeleton || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
21
|
[
"Serinicoccus",
"profundi",
"sp",
".",
"nov",
".",
",",
"an",
"actinomycete",
"isolated",
"from",
"deep",
"-",
"sea",
"sediment",
",",
"and",
"emended",
"description",
"of",
"the",
"genus",
"Serinicoccus",
"."
] |
[
1,
2,
2,
2,
2,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Serinicoccus || profundi || sp || . || nov || . || , || an || actinomycete || isolated || from || deep || - || sea || sediment || , || and || emended || description || of || the || genus || Serinicoccus || .
Tokens:
|
NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
22
|
[
"A",
"Gram",
"-",
"reaction",
"-",
"positive",
"bacterial",
"strain",
"of",
"the",
"genus",
"Serinicoccus",
",",
"designated",
"MCCC",
"1A05965",
"(",
"T",
")",
",",
"was",
"isolated",
"from",
"a",
"deep",
"-",
"sea",
"(",
"5368",
"m",
")",
"sediment",
"of",
"the",
"Indian",
"Ocean",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
1,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: A || Gram || - || reaction || - || positive || bacterial || strain || of || the || genus || Serinicoccus || , || designated || MCCC || 1A05965 || ( || T || ) || , || was || isolated || from || a || deep || - || sea || ( || 5368 || m || ) || sediment || of || the || Indian || Ocean || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
23
|
[
"Comparison",
"of",
"16S",
"rRNA",
"gene",
"sequences",
"revealed",
"that",
"the",
"isolate",
"shared",
"97",
".",
"6",
"%",
"sequence",
"similarity",
"with",
"Serinicoccus",
"marinus",
"JC1078",
"(",
"T",
")",
",",
"the",
"type",
"strain",
"of",
"the",
"only",
"described",
"species",
"of",
"the",
"genus",
"Serinicoccus",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
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0,
1,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Comparison || of || 16S || rRNA || gene || sequences || revealed || that || the || isolate || shared || 97 || . || 6 || % || sequence || similarity || with || Serinicoccus || marinus || JC1078 || ( || T || ) || , || the || type || strain || of || the || only || described || species || of || the || genus || Serinicoccus || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
24
|
[
"The",
"DNA",
"-",
"DNA",
"relatedness",
"between",
"these",
"two",
"strains",
"was",
"46",
".",
"2",
"%",
"(",
"standard",
"deviation",
"1",
".",
"86",
"%",
")",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || DNA || - || DNA || relatedness || between || these || two || strains || was || 46 || . || 2 || % || ( || standard || deviation || 1 || . || 86 || % || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
25
|
[
"The",
"cell",
"wall",
"contained",
"alanine",
",",
"glycine",
",",
"serine",
",",
"l",
"-",
"ornithine",
"and",
"glutamic",
"acid",
",",
"which",
"corresponds",
"to",
"the",
"description",
"of",
"the",
"genus",
"Serinicoccus",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || cell || wall || contained || alanine || , || glycine || , || serine || , || l || - || ornithine || and || glutamic || acid || , || which || corresponds || to || the || description || of || the || genus || Serinicoccus || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
26
|
[
"The",
"acyl",
"type",
"of",
"the",
"glycan",
"chain",
"of",
"the",
"peptidoglycan",
"was",
"glycolyl",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || acyl || type || of || the || glycan || chain || of || the || peptidoglycan || was || glycolyl || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None
|
27
|
[
"Other",
"characteristics",
"of",
"strain",
"MCCC",
"1A05965",
"(",
"T",
")",
"were",
"consistent",
"with",
"those",
"of",
"the",
"genus",
"Serinicoccus",
"."
] |
[
0,
0,
0,
0,
1,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Other || characteristics || of || strain || MCCC || 1A05965 || ( || T || ) || were || consistent || with || those || of || the || genus || Serinicoccus || .
Tokens:
|
None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None
|
28
|
[
"Cells",
"were",
"coccoid",
",",
"moderately",
"halophilic",
",",
"oxidase",
"-",
"negative",
",",
"catalase",
"-",
"positive",
"and",
"non",
"-",
"spore",
"-",
"forming",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Cells || were || coccoid || , || moderately || halophilic || , || oxidase || - || negative || , || catalase || - || positive || and || non || - || spore || - || forming || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
29
|
[
"The",
"major",
"menaquinone",
"was",
"MK",
"-",
"8",
"(",
"H",
"(",
"4",
")",
")",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || major || menaquinone || was || MK || - || 8 || ( || H || ( || 4 || ) || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
30
|
[
"The",
"predominant",
"cellular",
"fatty",
"acids",
"were",
"iso",
"-",
"C",
"(",
"15",
":",
"0",
")",
"(",
"34",
".",
"7",
"%",
")",
"and",
"iso",
"-",
"C",
"(",
"16",
":",
"0",
")",
"(",
"17",
".",
"0",
"%",
")",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || predominant || cellular || fatty || acids || were || iso || - || C || ( || 15 || : || 0 || ) || ( || 34 || . || 7 || % || ) || and || iso || - || C || ( || 16 || : || 0 || ) || ( || 17 || . || 0 || % || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
31
|
[
"The",
"polar",
"lipids",
"were",
"phosphatidylglycerol",
",",
"diphosphatidylglycerol",
",",
"phosphatidylcholine",
",",
"phosphatidylinositol",
"and",
"an",
"unknown",
"glycolipid",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || polar || lipids || were || phosphatidylglycerol || , || diphosphatidylglycerol || , || phosphatidylcholine || , || phosphatidylinositol || and || an || unknown || glycolipid || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
32
|
[
"The",
"DNA",
"G",
"+",
"C",
"content",
"was",
"72",
"mol",
"%",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || DNA || G || + || C || content || was || 72 || mol || % || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None
|
33
|
[
"Strain",
"MCCC",
"1A05965",
"(",
"T",
")",
"(",
"=",
"0714S6",
"-",
"1",
"(",
"T",
")",
"=",
"DSM",
"21363",
"(",
"T",
")",
"=",
"CGMCC",
"4",
".",
"5582",
"(",
"T",
")",
")",
"is",
"assigned",
"as",
"the",
"type",
"strain",
"of",
"a",
"novel",
"species",
",",
"for",
"which",
"the",
"name",
"Serinicoccus",
"profundi",
"sp",
".",
"nov",
"."
] |
[
0,
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0,
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0,
0,
0,
0,
0,
0,
0,
1,
2,
2,
2,
2,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Strain || MCCC || 1A05965 || ( || T || ) || ( || = || 0714S6 || - || 1 || ( || T || ) || = || DSM || 21363 || ( || T || ) || = || CGMCC || 4 || . || 5582 || ( || T || ) || ) || is || assigned || as || the || type || strain || of || a || novel || species || , || for || which || the || name || Serinicoccus || profundi || sp || . || nov || .
Tokens:
|
None || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None
|
34
|
[
"is",
"proposed",
"."
] |
[
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: is || proposed || .
Tokens:
|
None || None || None
|
35
|
[
"Proposal",
"of",
"Mingxiaea",
"gen",
".",
"nov",
".",
"for",
"the",
"anamorphic",
"basidiomycetous",
"yeast",
"species",
"in",
"the",
"Bulleribasidium",
"clade",
"(",
"Tremellales",
")",
"based",
"on",
"molecular",
"phylogenetic",
"analysis",
",",
"with",
"six",
"new",
"combinations",
"and",
"four",
"novel",
"species",
"."
] |
[
0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Proposal || of || Mingxiaea || gen || . || nov || . || for || the || anamorphic || basidiomycetous || yeast || species || in || the || Bulleribasidium || clade || ( || Tremellales || ) || based || on || molecular || phylogenetic || analysis || , || with || six || new || combinations || and || four || novel || species || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
36
|
[
"The",
"distinction",
"and",
"monophyletic",
"property",
"of",
"the",
"basidiomycetous",
"yeast",
"species",
"in",
"the",
"Bulleribasidium",
"clade",
"of",
"the",
"order",
"Tremellales",
"was",
"resolved",
"by",
"molecular",
"phylogenetic",
"analysis",
"based",
"on",
"the",
"combined",
"sequences",
"of",
"the",
"18S",
"rRNA",
"gene",
",",
"internal",
"transcribed",
"spacer",
"(",
"ITS",
")",
"region",
"including",
"5",
".",
"8S",
"rRNA",
"gene",
"and",
"26S",
"rRNA",
"gene",
"D1",
"/",
"D2",
"domain",
"."
] |
[
0,
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] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || distinction || and || monophyletic || property || of || the || basidiomycetous || yeast || species || in || the || Bulleribasidium || clade || of || the || order || Tremellales || was || resolved || by || molecular || phylogenetic || analysis || based || on || the || combined || sequences || of || the || 18S || rRNA || gene || , || internal || transcribed || spacer || ( || ITS || ) || region || including || 5 || . || 8S || rRNA || gene || and || 26S || rRNA || gene || D1 || / || D2 || domain || .
Tokens:
|
None || None || None || None || None || None || None || None || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
37
|
[
"The",
"addition",
"to",
"the",
"clade",
"of",
"new",
"anamorphic",
"species",
"identified",
"among",
"ballistoconidium",
"-",
"forming",
"yeasts",
"isolated",
"from",
"China",
"confirmed",
"and",
"strengthened",
"the",
"separation",
"of",
"this",
"clade",
"from",
"other",
"clades",
"or",
"lineages",
"in",
"the",
"order",
"Tremellales",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
1,
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0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || addition || to || the || clade || of || new || anamorphic || species || identified || among || ballistoconidium || - || forming || yeasts || isolated || from || China || confirmed || and || strengthened || the || separation || of || this || clade || from || other || clades || or || lineages || in || the || order || Tremellales || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
38
|
[
"A",
"new",
"anamorphic",
"genus",
",",
"Mingxiaea",
"gen",
".",
"nov",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: A || new || anamorphic || genus || , || Mingxiaea || gen || . || nov || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None
|
39
|
[
"(",
"type",
"species",
"Mingxiaea",
"variabilis",
"comb",
".",
"nov",
".",
")",
"is",
"therefore",
"proposed",
"to",
"accommodate",
"the",
"anamorphic",
"species",
"in",
"the",
"Bulleribasidium",
"clade",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: ( || type || species || Mingxiaea || variabilis || comb || . || nov || . || ) || is || therefore || proposed || to || accommodate || the || anamorphic || species || in || the || Bulleribasidium || clade || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
40
|
[
"Six",
"new",
"combinations",
"are",
"proposed",
"for",
"the",
"described",
"species",
"of",
"this",
"clade",
"which",
"were",
"formerly",
"assigned",
"to",
"the",
"genus",
"Bullera",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Six || new || combinations || are || proposed || for || the || described || species || of || this || clade || which || were || formerly || assigned || to || the || genus || Bullera || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
41
|
[
"Four",
"novel",
"species",
"in",
"the",
"new",
"genus",
"were",
"identified",
"among",
"16",
"ballistoconidium",
"-",
"forming",
"yeast",
"strains",
"isolated",
"from",
"plant",
"leaves",
"collected",
"in",
"Hainan",
"province",
",",
"southern",
"China",
",",
"by",
"D1",
"/",
"D2",
"and",
"ITS",
"sequence",
"analyses",
"."
] |
[
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] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Four || novel || species || in || the || new || genus || were || identified || among || 16 || ballistoconidium || - || forming || yeast || strains || isolated || from || plant || leaves || collected || in || Hainan || province || , || southern || China || , || by || D1 || / || D2 || and || ITS || sequence || analyses || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
42
|
[
"The",
"novel",
"species",
"are",
"described",
"as",
"Mingxiaea",
"sanyaensis",
"sp",
".",
"nov",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || novel || species || are || described || as || Mingxiaea || sanyaensis || sp || . || nov || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None
|
43
|
[
"(",
"type",
"strain",
"SY",
"-",
"3",
".",
"23",
"(",
"T",
")",
"=",
"AS",
"2",
".",
"3623",
"(",
"T",
")",
"=",
"CBS",
"11408",
"(",
"T",
")",
")",
",",
"Mingxiaea",
"hainanensis",
"(",
"type",
"strain",
"WZS",
"-",
"8",
".",
"13",
"(",
"T",
")",
"=",
"AS",
"2",
".",
"4161",
"(",
"T",
")",
"=",
"CBS",
"11409",
"(",
"T",
")",
")",
",",
"Mingxiaea",
"foliicola",
"(",
"type",
"strain",
"WZS",
"-",
"8",
".",
"14",
"(",
"T",
")",
"=",
"AS",
"2",
".",
"3518",
"(",
"T",
")",
"=",
"CBS",
"11407",
"(",
"T",
")",
")",
"and",
"Mingxiaea",
"wuzhishanensis",
"(",
"type",
"strain",
"WZS",
"-",
"29",
".",
"8",
"(",
"T",
")",
"=",
"AS",
"2",
".",
"4163",
"(",
"T",
")",
"=",
"CBS",
"11411",
"(",
"T",
")",
")",
"."
] |
[
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] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: ( || type || strain || SY || - || 3 || . || 23 || ( || T || ) || = || AS || 2 || . || 3623 || ( || T || ) || = || CBS || 11408 || ( || T || ) || ) || , || Mingxiaea || hainanensis || ( || type || strain || WZS || - || 8 || . || 13 || ( || T || ) || = || AS || 2 || . || 4161 || ( || T || ) || = || CBS || 11409 || ( || T || ) || ) || , || Mingxiaea || foliicola || ( || type || strain || WZS || - || 8 || . || 14 || ( || T || ) || = || AS || 2 || . || 3518 || ( || T || ) || = || CBS || 11407 || ( || T || ) || ) || and || Mingxiaea || wuzhishanensis || ( || type || strain || WZS || - || 29 || . || 8 || ( || T || ) || = || AS || 2 || . || 4163 || ( || T || ) || = || CBS || 11411 || ( || T || ) || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
44
|
[
"Scardovia",
"wiggsiae",
"sp",
".",
"nov",
".",
",",
"isolated",
"from",
"the",
"human",
"oral",
"cavity",
"and",
"clinical",
"material",
",",
"and",
"emended",
"descriptions",
"of",
"the",
"genus",
"Scardovia",
"and",
"Scardovia",
"inopinata",
"."
] |
[
1,
2,
0,
0,
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0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
1,
2,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Scardovia || wiggsiae || sp || . || nov || . || , || isolated || from || the || human || oral || cavity || and || clinical || material || , || and || emended || descriptions || of || the || genus || Scardovia || and || Scardovia || inopinata || .
Tokens:
|
NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None
|
45
|
[
"Six",
"strains",
"of",
"anaerobic",
",",
"pleomorphic",
"Gram",
"-",
"positive",
"bacilli",
",",
"isolated",
"from",
"the",
"human",
"oral",
"cavity",
"and",
"an",
"infected",
"arm",
"wound",
",",
"were",
"subjected",
"to",
"a",
"comprehensive",
"range",
"of",
"phenotypic",
"and",
"genotypic",
"tests",
"and",
"were",
"found",
"to",
"comprise",
"a",
"homogeneous",
"group",
"."
] |
[
0,
0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Six || strains || of || anaerobic || , || pleomorphic || Gram || - || positive || bacilli || , || isolated || from || the || human || oral || cavity || and || an || infected || arm || wound || , || were || subjected || to || a || comprehensive || range || of || phenotypic || and || genotypic || tests || and || were || found || to || comprise || a || homogeneous || group || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
46
|
[
"16S",
"rRNA",
"gene",
"sequence",
"analysis",
"revealed",
"that",
"the",
"isolates",
"were",
"most",
"closely",
"related",
"to",
"Scardovia",
"inopinata",
"CCUG",
"35729",
"(",
"T",
")",
"(",
"94",
".",
"8",
"-",
"94",
".",
"9",
"%",
"16S",
"rRNA",
"gene",
"sequence",
"similarity",
")",
"."
] |
[
0,
0,
0,
0,
0,
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0,
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1,
2,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: 16S || rRNA || gene || sequence || analysis || revealed || that || the || isolates || were || most || closely || related || to || Scardovia || inopinata || CCUG || 35729 || ( || T || ) || ( || 94 || . || 8 || - || 94 || . || 9 || % || 16S || rRNA || gene || sequence || similarity || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
47
|
[
"The",
"isolates",
"were",
"saccharolytic",
"and",
"produced",
"acetic",
"and",
"lactic",
"acids",
"as",
"end",
"products",
"of",
"fermentation",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || isolates || were || saccharolytic || and || produced || acetic || and || lactic || acids || as || end || products || of || fermentation || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
48
|
[
"The",
"major",
"fatty",
"acids",
"were",
"C",
"(",
"16",
":",
"0",
")",
"(",
"49",
".",
"8",
"%",
")",
"and",
"C",
"(",
"18",
":",
"1",
")",
"omega9c",
"(",
"35",
".",
"8",
"%",
")",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || major || fatty || acids || were || C || ( || 16 || : || 0 || ) || ( || 49 || . || 8 || % || ) || and || C || ( || 18 || : || 1 || ) || omega9c || ( || 35 || . || 8 || % || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
49
|
[
"Polar",
"lipid",
"analysis",
"revealed",
"a",
"variety",
"of",
"glycolipids",
",",
"diphosphatidylglycerol",
",",
"an",
"unidentified",
"phospholipid",
"and",
"an",
"unidentified",
"phosphoglycolipid",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Polar || lipid || analysis || revealed || a || variety || of || glycolipids || , || diphosphatidylglycerol || , || an || unidentified || phospholipid || and || an || unidentified || phosphoglycolipid || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
50
|
[
"No",
"respiratory",
"quinones",
"were",
"detected",
"."
] |
[
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: No || respiratory || quinones || were || detected || .
Tokens:
|
None || None || None || None || None || None
|
51
|
[
"The",
"peptidoglycan",
"was",
"of",
"the",
"type",
"A4alpha",
"L",
"-",
"Lys",
"-",
"Thr",
"-",
"Glu",
",",
"with",
"L",
"-",
"lysine",
"partially",
"replaced",
"by",
"L",
"-",
"ornithine",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || peptidoglycan || was || of || the || type || A4alpha || L || - || Lys || - || Thr || - || Glu || , || with || L || - || lysine || partially || replaced || by || L || - || ornithine || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
52
|
[
"The",
"DNA",
"G",
"+",
"C",
"content",
"of",
"one",
"of",
"the",
"strains",
",",
"C1A",
"_",
"55",
"(",
"T",
")",
"(",
",",
")",
"was",
"55",
"mol",
"%",
"."
] |
[
0,
0,
0,
0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || DNA || G || + || C || content || of || one || of || the || strains || , || C1A || _ || 55 || ( || T || ) || ( || , || ) || was || 55 || mol || % || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
53
|
[
"A",
"novel",
"species",
",",
"Scardovia",
"wiggsiae",
"sp",
".",
"nov",
".",
",",
"is",
"proposed",
"to",
"accommodate",
"the",
"six",
"isolates",
",",
"with",
"the",
"type",
"strain",
"C1A",
"_",
"55",
"(",
"T",
")",
"(",
"=",
"DSM",
"22547",
"(",
"T",
")",
"=",
"CCUG",
"58090",
"(",
"T",
")",
")",
"."
] |
[
0,
0,
0,
0,
1,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
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0,
0,
0,
0,
0,
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0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: A || novel || species || , || Scardovia || wiggsiae || sp || . || nov || . || , || is || proposed || to || accommodate || the || six || isolates || , || with || the || type || strain || C1A || _ || 55 || ( || T || ) || ( || = || DSM || 22547 || ( || T || ) || = || CCUG || 58090 || ( || T || ) || ) || .
Tokens:
|
None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
54
|
[
"Flavobacterium",
"ponti",
"sp",
".",
"nov",
".",
",",
"isolated",
"from",
"seawater",
"."
] |
[
1,
2,
2,
2,
2,
2,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Flavobacterium || ponti || sp || . || nov || . || , || isolated || from || seawater || .
Tokens:
|
NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None
|
55
|
[
"A",
"Gram",
"-",
"stain",
"-",
"negative",
",",
"non",
"-",
"flagellated",
",",
"non",
"-",
"gliding",
",",
"yellow",
"-",
"pigmented",
"and",
"rod",
"-",
"shaped",
"bacterial",
"strain",
",",
"designated",
"GSW",
"-",
"R14",
"(",
"T",
")",
",",
"was",
"isolated",
"from",
"seawater",
"of",
"Geoje",
"Island",
"in",
"the",
"South",
"Sea",
",",
"Korea",
"."
] |
[
0,
0,
0,
0,
0,
0,
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0,
0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: A || Gram || - || stain || - || negative || , || non || - || flagellated || , || non || - || gliding || , || yellow || - || pigmented || and || rod || - || shaped || bacterial || strain || , || designated || GSW || - || R14 || ( || T || ) || , || was || isolated || from || seawater || of || Geoje || Island || in || the || South || Sea || , || Korea || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
56
|
[
"Strain",
"GSW",
"-",
"R14",
"(",
"T",
")",
"grew",
"optimally",
"at",
"25",
"^",
"0C",
",",
"at",
"pH",
"7",
".",
"0",
"-",
"8",
".",
"0",
"and",
"in",
"the",
"presence",
"of",
"2",
"%",
"(",
"w",
"/",
"v",
")",
"NaCl",
"."
] |
[
0,
1,
2,
2,
0,
0,
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0,
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0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Strain || GSW || - || R14 || ( || T || ) || grew || optimally || at || 25 || ^ || 0C || , || at || pH || 7 || . || 0 || - || 8 || . || 0 || and || in || the || presence || of || 2 || % || ( || w || / || v || ) || NaCl || .
Tokens:
|
None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
57
|
[
"Phylogenetic",
"analyses",
"based",
"on",
"16S",
"rRNA",
"gene",
"sequences",
"showed",
"that",
"strain",
"GSW",
"-",
"R14",
"(",
"T",
")",
"belonged",
"to",
"the",
"genus",
"Flavobacterium",
",",
"joining",
"Flavobacterium",
"gelidilacus",
"LMG",
"21477",
"(",
"T",
")",
"by",
"a",
"bootstrap",
"resampling",
"value",
"of",
"100",
"%",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
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0,
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1,
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2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Phylogenetic || analyses || based || on || 16S || rRNA || gene || sequences || showed || that || strain || GSW || - || R14 || ( || T || ) || belonged || to || the || genus || Flavobacterium || , || joining || Flavobacterium || gelidilacus || LMG || 21477 || ( || T || ) || by || a || bootstrap || resampling || value || of || 100 || % || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
58
|
[
"Strain",
"GSW",
"-",
"R14",
"(",
"T",
")",
"exhibited",
"97",
".",
"6",
"%",
"16S",
"rRNA",
"gene",
"sequence",
"similarity",
"to",
"F",
".",
"gelidilacus",
"LMG",
"21477",
"(",
"T",
")",
"and",
"similarities",
"of",
"91",
".",
"2",
"-",
"95",
".",
"2",
"%",
"to",
"other",
"members",
"of",
"the",
"genus",
"Flavobacterium",
"."
] |
[
0,
1,
2,
2,
0,
0,
0,
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0,
0,
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2,
2,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Strain || GSW || - || R14 || ( || T || ) || exhibited || 97 || . || 6 || % || 16S || rRNA || gene || sequence || similarity || to || F || . || gelidilacus || LMG || 21477 || ( || T || ) || and || similarities || of || 91 || . || 2 || - || 95 || . || 2 || % || to || other || members || of || the || genus || Flavobacterium || .
Tokens:
|
None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
59
|
[
"Strain",
"GSW",
"-",
"R14",
"(",
"T",
")",
"contained",
"MK",
"-",
"6",
"as",
"the",
"predominant",
"menaquinone",
"."
] |
[
0,
1,
2,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Strain || GSW || - || R14 || ( || T || ) || contained || MK || - || 6 || as || the || predominant || menaquinone || .
Tokens:
|
None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None
|
60
|
[
"The",
"fatty",
"acid",
"profile",
"of",
"strain",
"GSW",
"-",
"R14",
"(",
"T",
")",
"was",
"similar",
"to",
"that",
"of",
"F",
".",
"gelidilacus",
"LMG",
"21477",
"(",
"T",
")",
"."
] |
[
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1,
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2,
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0,
0,
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0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || fatty || acid || profile || of || strain || GSW || - || R14 || ( || T || ) || was || similar || to || that || of || F || . || gelidilacus || LMG || 21477 || ( || T || ) || .
Tokens:
|
None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None
|
61
|
[
"The",
"DNA",
"G",
"+",
"C",
"content",
"of",
"strain",
"GSW",
"-",
"R14",
"(",
"T",
")",
"was",
"31",
".",
"4",
"mol",
"%",
"and",
"its",
"DNA",
"-",
"DNA",
"relatedness",
"with",
"F",
".",
"gelidilacus",
"LMG",
"21477",
"(",
"T",
")",
"was",
"31",
"%",
"."
] |
[
0,
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0,
0,
0,
1,
2,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || DNA || G || + || C || content || of || strain || GSW || - || R14 || ( || T || ) || was || 31 || . || 4 || mol || % || and || its || DNA || - || DNA || relatedness || with || F || . || gelidilacus || LMG || 21477 || ( || T || ) || was || 31 || % || .
Tokens:
|
None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None
|
62
|
[
"Strain",
"GSW",
"-",
"R14",
"(",
"T",
")",
"could",
"be",
"distinguished",
"from",
"F",
".",
"gelidilacus",
"and",
"the",
"other",
"species",
"of",
"the",
"genus",
"Flavobacterium",
"by",
"its",
"phylogenetic",
"and",
"genetic",
"distinctiveness",
"and",
"by",
"several",
"phenotypic",
"properties",
"."
] |
[
0,
1,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Strain || GSW || - || R14 || ( || T || ) || could || be || distinguished || from || F || . || gelidilacus || and || the || other || species || of || the || genus || Flavobacterium || by || its || phylogenetic || and || genetic || distinctiveness || and || by || several || phenotypic || properties || .
Tokens:
|
None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
63
|
[
"On",
"the",
"basis",
"of",
"these",
"data",
",",
"strain",
"GSW",
"-",
"R14",
"(",
"T",
")",
"is",
"considered",
"to",
"represent",
"a",
"novel",
"species",
"of",
"the",
"genus",
"Flavobacterium",
",",
"for",
"which",
"the",
"name",
"Flavobacterium",
"ponti",
"sp",
".",
"nov",
"."
] |
[
0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
1,
2,
2,
2,
2,
2
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: On || the || basis || of || these || data || , || strain || GSW || - || R14 || ( || T || ) || is || considered || to || represent || a || novel || species || of || the || genus || Flavobacterium || , || for || which || the || name || Flavobacterium || ponti || sp || . || nov || .
Tokens:
|
None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token
|
64
|
[
"is",
"proposed",
";",
"the",
"type",
"strain",
"is",
"GSW",
"-",
"R14",
"(",
"T",
")",
"(",
"=",
"KCTC",
"22802",
"(",
"T",
")",
"=",
"CCUG",
"58402",
"(",
"T",
")",
")",
"."
] |
[
0,
0,
0,
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0,
0,
0,
1,
2,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: is || proposed || ; || the || type || strain || is || GSW || - || R14 || ( || T || ) || ( || = || KCTC || 22802 || ( || T || ) || = || CCUG || 58402 || ( || T || ) || ) || .
Tokens:
|
None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
65
|
[
"Thermasporomyces",
"composti",
"gen",
".",
"nov",
".",
",",
"sp",
".",
"nov",
".",
",",
"a",
"thermophilic",
"actinomycete",
"isolated",
"from",
"compost",
"."
] |
[
1,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Thermasporomyces || composti || gen || . || nov || . || , || sp || . || nov || . || , || a || thermophilic || actinomycete || isolated || from || compost || .
Tokens:
|
NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None
|
66
|
[
"A",
"thermophilic",
",",
"Gram",
"-",
"positive",
"bacterium",
"that",
"formed",
"a",
"branched",
"vegetative",
"mycelium",
"was",
"isolated",
"from",
"compost",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: A || thermophilic || , || Gram || - || positive || bacterium || that || formed || a || branched || vegetative || mycelium || was || isolated || from || compost || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
67
|
[
"The",
"strain",
",",
"designated",
"I3",
"(",
"T",
")",
",",
"grew",
"at",
"temperatures",
"between",
"35",
"and",
"62",
"^",
"0C",
",",
"with",
"optimum",
"growth",
"at",
"50",
"-",
"55",
"^",
"0C",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
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0,
0,
0,
0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || strain || , || designated || I3 || ( || T || ) || , || grew || at || temperatures || between || 35 || and || 62 || ^ || 0C || , || with || optimum || growth || at || 50 || - || 55 || ^ || 0C || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
68
|
[
"No",
"growth",
"was",
"observed",
"below",
"29",
"^",
"0C",
"or",
"above",
"65",
"^",
"0C",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: No || growth || was || observed || below || 29 || ^ || 0C || or || above || 65 || ^ || 0C || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
69
|
[
"The",
"pH",
"range",
"for",
"growth",
"was",
"5",
".",
"7",
"-",
"10",
".",
"0",
",",
"the",
"pH",
"for",
"optimum",
"growth",
"was",
"7",
".",
"0",
"and",
"no",
"growth",
"was",
"observed",
"below",
"pH",
"5",
".",
"6",
"or",
"above",
"pH",
"10",
".",
"8",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || pH || range || for || growth || was || 5 || . || 7 || - || 10 || . || 0 || , || the || pH || for || optimum || growth || was || 7 || . || 0 || and || no || growth || was || observed || below || pH || 5 || . || 6 || or || above || pH || 10 || . || 8 || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
70
|
[
"The",
"DNA",
"G",
"+",
"C",
"content",
"of",
"strain",
"I3",
"(",
"T",
")",
"was",
"69",
".",
"2",
"mol",
"%",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || DNA || G || + || C || content || of || strain || I3 || ( || T || ) || was || 69 || . || 2 || mol || % || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
71
|
[
"The",
"major",
"fatty",
"acids",
"found",
"were",
"C",
"(",
"15",
":",
"0",
")",
"iso",
"(",
"14",
".",
"2",
"%",
")",
",",
"C",
"(",
"15",
":",
"0",
")",
"anteiso",
"(",
"12",
".",
"1",
"%",
")",
",",
"C",
"(",
"17",
":",
"0",
")",
"iso",
"(",
"16",
".",
"3",
"%",
")",
"and",
"C",
"(",
"17",
":",
"0",
")",
"anteiso",
"(",
"21",
".",
"7",
"%",
")",
"."
] |
[
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] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || major || fatty || acids || found || were || C || ( || 15 || : || 0 || ) || iso || ( || 14 || . || 2 || % || ) || , || C || ( || 15 || : || 0 || ) || anteiso || ( || 12 || . || 1 || % || ) || , || C || ( || 17 || : || 0 || ) || iso || ( || 16 || . || 3 || % || ) || and || C || ( || 17 || : || 0 || ) || anteiso || ( || 21 || . || 7 || % || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
72
|
[
"The",
"major",
"menaquinones",
"were",
"MK",
"-",
"9",
"(",
"H",
"(",
"4",
")",
")",
",",
"MK",
"-",
"10",
"(",
"H",
"(",
"4",
")",
")",
"and",
"MK",
"-",
"11",
"(",
"H",
"(",
"4",
")",
")",
"."
] |
[
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || major || menaquinones || were || MK || - || 9 || ( || H || ( || 4 || ) || ) || , || MK || - || 10 || ( || H || ( || 4 || ) || ) || and || MK || - || 11 || ( || H || ( || 4 || ) || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
73
|
[
"The",
"cell",
"wall",
"contained",
"glutamic",
"acid",
",",
"glycine",
",",
"alanine",
"and",
"ll",
"-",
"diaminopimelic",
"acid",
"in",
"a",
"molar",
"ratio",
"of",
"1",
".",
"0",
":",
"3",
".",
"9",
":",
"0",
".",
"6",
":",
"0",
".",
"5",
"."
] |
[
0,
0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || cell || wall || contained || glutamic || acid || , || glycine || , || alanine || and || ll || - || diaminopimelic || acid || in || a || molar || ratio || of || 1 || . || 0 || : || 3 || . || 9 || : || 0 || . || 6 || : || 0 || . || 5 || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
74
|
[
"The",
"polar",
"lipids",
"consisted",
"of",
"ninhydrin",
"-",
"positive",
"phosphoglycolipids",
",",
"phosphatidylglycerol",
",",
"diphosphatidylglycerol",
"and",
"an",
"unknown",
"glycolipid",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || polar || lipids || consisted || of || ninhydrin || - || positive || phosphoglycolipids || , || phosphatidylglycerol || , || diphosphatidylglycerol || and || an || unknown || glycolipid || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
75
|
[
"The",
"cell",
"-",
"wall",
"sugars",
"were",
"rhamnose",
"and",
"arabinose",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || cell || - || wall || sugars || were || rhamnose || and || arabinose || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None
|
76
|
[
"16S",
"rRNA",
"gene",
"sequence",
"analysis",
"assigned",
"this",
"actinomycete",
"to",
"the",
"family",
"Nocardioidaceae",
",",
"but",
"its",
"16S",
"rRNA",
"gene",
"sequence",
"shared",
"no",
"more",
"than",
"95",
".",
"5",
"%",
"similarity",
"with",
"those",
"of",
"other",
"members",
"of",
"the",
"family",
"."
] |
[
0,
0,
0,
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0,
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0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: 16S || rRNA || gene || sequence || analysis || assigned || this || actinomycete || to || the || family || Nocardioidaceae || , || but || its || 16S || rRNA || gene || sequence || shared || no || more || than || 95 || . || 5 || % || similarity || with || those || of || other || members || of || the || family || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
77
|
[
"The",
"chemotaxonomic",
"and",
"phenotypic",
"characteristics",
"of",
"strain",
"I3",
"(",
"T",
")",
"differed",
"in",
"some",
"respects",
"from",
"those",
"of",
"members",
"of",
"the",
"genus",
"Actinopolymorpha",
",",
"the",
"most",
"closely",
"related",
"genus",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || chemotaxonomic || and || phenotypic || characteristics || of || strain || I3 || ( || T || ) || differed || in || some || respects || from || those || of || members || of || the || genus || Actinopolymorpha || , || the || most || closely || related || genus || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
78
|
[
"Therefore",
",",
"strain",
"I3",
"(",
"T",
")",
"represents",
"a",
"novel",
"species",
"in",
"a",
"new",
"genus",
"of",
"the",
"family",
"Nocardioidaceae",
",",
"for",
"which",
"the",
"name",
"Thermasporomyces",
"composti",
"gen",
".",
"nov",
".",
",",
"sp",
".",
"nov",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
1,
2,
2,
2,
2,
2,
2,
2,
2,
2,
2
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Therefore || , || strain || I3 || ( || T || ) || represents || a || novel || species || in || a || new || genus || of || the || family || Nocardioidaceae || , || for || which || the || name || Thermasporomyces || composti || gen || . || nov || . || , || sp || . || nov || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token
|
79
|
[
"is",
"proposed",
"."
] |
[
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: is || proposed || .
Tokens:
|
None || None || None
|
80
|
[
"The",
"type",
"strain",
"of",
"the",
"type",
"species",
"is",
"I3",
"(",
"T",
")",
"(",
"=",
"JCM",
"16421",
"(",
"T",
")",
"=",
"DSM",
"22891",
"(",
"T",
")",
")",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
1,
2,
2,
2,
2,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || type || strain || of || the || type || species || is || I3 || ( || T || ) || ( || = || JCM || 16421 || ( || T || ) || = || DSM || 22891 || ( || T || ) || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None
|
81
|
[
"Phycicoccus",
"cremeus",
"sp",
".",
"nov",
".",
",",
"isolated",
"from",
"forest",
"soil",
",",
"and",
"emended",
"description",
"of",
"the",
"genus",
"Phycicoccus",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Phycicoccus || cremeus || sp || . || nov || . || , || isolated || from || forest || soil || , || and || emended || description || of || the || genus || Phycicoccus || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
82
|
[
"A",
"bacterial",
"strain",
",",
"designated",
"V2M29",
"(",
"T",
")",
",",
"was",
"isolated",
"from",
"forest",
"soil",
"collected",
"in",
"the",
"Changbai",
"Mountains",
",",
"Heilongjiang",
"Province",
",",
"China",
"."
] |
[
0,
0,
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0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: A || bacterial || strain || , || designated || V2M29 || ( || T || ) || , || was || isolated || from || forest || soil || collected || in || the || Changbai || Mountains || , || Heilongjiang || Province || , || China || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
83
|
[
"Cells",
"of",
"strain",
"V2M29",
"(",
"T",
")",
"were",
"Gram",
"-",
"positive",
",",
"rod",
"-",
"shaped",
"(",
"0",
".",
"5",
"-",
"0",
".",
"8",
"mum",
"in",
"diameter",
"and",
"1",
".",
"5",
"-",
"2",
".",
"0",
"mum",
"in",
"length",
")",
",",
"strictly",
"aerobic",
"and",
"non",
"-",
"motile",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Cells || of || strain || V2M29 || ( || T || ) || were || Gram || - || positive || , || rod || - || shaped || ( || 0 || . || 5 || - || 0 || . || 8 || mum || in || diameter || and || 1 || . || 5 || - || 2 || . || 0 || mum || in || length || ) || , || strictly || aerobic || and || non || - || motile || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
84
|
[
"Colonies",
"produced",
"on",
"R2A",
"agar",
"plates",
"were",
"creamy",
",",
"smooth",
",",
"circular",
"and",
"0",
".",
"3",
"-",
"0",
".",
"8",
"mm",
"in",
"diameter",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Colonies || produced || on || R2A || agar || plates || were || creamy || , || smooth || , || circular || and || 0 || . || 3 || - || 0 || . || 8 || mm || in || diameter || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
85
|
[
"Strain",
"V2M29",
"(",
"T",
")",
"grew",
"at",
"14",
"-",
"35",
"^",
"0C",
"(",
"optimum",
",",
"29",
"^",
"0C",
")",
",",
"at",
"pH",
"4",
".",
"1",
"-",
"10",
".",
"0",
"(",
"optimum",
",",
"pH",
"7",
".",
"0",
"-",
"8",
".",
"0",
")",
"and",
"in",
"the",
"presence",
"of",
"0",
"-",
"7",
".",
"0",
"%",
"(",
"w",
"/",
"v",
")",
"NaCl",
"(",
"optimum",
",",
"0",
"-",
"2",
".",
"0",
"%",
")",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
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0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Strain || V2M29 || ( || T || ) || grew || at || 14 || - || 35 || ^ || 0C || ( || optimum || , || 29 || ^ || 0C || ) || , || at || pH || 4 || . || 1 || - || 10 || . || 0 || ( || optimum || , || pH || 7 || . || 0 || - || 8 || . || 0 || ) || and || in || the || presence || of || 0 || - || 7 || . || 0 || % || ( || w || / || v || ) || NaCl || ( || optimum || , || 0 || - || 2 || . || 0 || % || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
86
|
[
"Strain",
"V2M29",
"(",
"T",
")",
"contained",
"MK",
"-",
"8",
"(",
"H",
"(",
"4",
")",
")",
"as",
"the",
"major",
"respiratory",
"quinone",
"and",
"iso",
"-",
"C",
"(",
"15",
":",
"0",
")",
"(",
"20",
".",
"9",
"%",
")",
",",
"iso",
"-",
"C",
"(",
"16",
":",
"0",
")",
"(",
"18",
".",
"5",
"%",
")",
",",
"C",
"(",
"17",
":",
"1",
")",
"omega8c",
"(",
"16",
".",
"7",
"%",
")",
"and",
"10",
"-",
"methyl",
"-",
"C",
"(",
"17",
":",
"0",
")",
"(",
"9",
".",
"2",
"%",
")",
"as",
"the",
"major",
"cellular",
"fatty",
"acids",
"."
] |
[
0,
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] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Strain || V2M29 || ( || T || ) || contained || MK || - || 8 || ( || H || ( || 4 || ) || ) || as || the || major || respiratory || quinone || and || iso || - || C || ( || 15 || : || 0 || ) || ( || 20 || . || 9 || % || ) || , || iso || - || C || ( || 16 || : || 0 || ) || ( || 18 || . || 5 || % || ) || , || C || ( || 17 || : || 1 || ) || omega8c || ( || 16 || . || 7 || % || ) || and || 10 || - || methyl || - || C || ( || 17 || : || 0 || ) || ( || 9 || . || 2 || % || ) || as || the || major || cellular || fatty || acids || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
87
|
[
"The",
"cell",
"-",
"wall",
"peptidoglycan",
"type",
"was",
"based",
"on",
"meso",
"-",
"2",
",",
"6",
"-",
"diaminopimelic",
"acid",
"and",
"the",
"acyl",
"type",
"of",
"the",
"muramic",
"acid",
"was",
"acetyl",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || cell || - || wall || peptidoglycan || type || was || based || on || meso || - || 2 || , || 6 || - || diaminopimelic || acid || and || the || acyl || type || of || the || muramic || acid || was || acetyl || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
88
|
[
"Diphosphatidylglycerol",
",",
"phosphatidylinositol",
"and",
"six",
"unknown",
"glycolipids",
"were",
"the",
"major",
"polar",
"lipids",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Diphosphatidylglycerol || , || phosphatidylinositol || and || six || unknown || glycolipids || were || the || major || polar || lipids || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None
|
89
|
[
"The",
"G",
"+",
"C",
"content",
"of",
"the",
"DNA",
"was",
"72",
".",
"0",
"mol",
"%",
"(",
"T",
"(",
"m",
")",
")",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || G || + || C || content || of || the || DNA || was || 72 || . || 0 || mol || % || ( || T || ( || m || ) || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
90
|
[
"16S",
"rRNA",
"gene",
"sequence",
"analysis",
"indicated",
"that",
"strain",
"V2M29",
"(",
"T",
")",
"was",
"phylogenetically",
"related",
"to",
"members",
"of",
"the",
"genus",
"Phycicoccus",
",",
"with",
"sequence",
"similarities",
"ranging",
"from",
"96",
".",
"6",
"-",
"97",
".",
"8",
"%",
"."
] |
[
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: 16S || rRNA || gene || sequence || analysis || indicated || that || strain || V2M29 || ( || T || ) || was || phylogenetically || related || to || members || of || the || genus || Phycicoccus || , || with || sequence || similarities || ranging || from || 96 || . || 6 || - || 97 || . || 8 || % || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
91
|
[
"The",
"DNA",
"-",
"DNA",
"relatedness",
"values",
"of",
"strain",
"V2M29",
"(",
"T",
")",
"to",
"Phycicoccus",
"dokdonensis",
"DS",
"-",
"8",
"(",
"T",
")",
"and",
"Phycicoccus",
"bigeumensis",
"DSM",
"19264",
"(",
"T",
")",
"were",
"32",
".",
"5",
"+",
"/",
"-",
"3",
".",
"3",
"%",
"and",
"29",
".",
"2",
"+",
"/",
"-",
"2",
".",
"3",
"%",
",",
"respectively",
"."
] |
[
0,
0,
0,
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1,
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1,
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0,
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0,
0,
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0,
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0,
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0,
0,
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0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || DNA || - || DNA || relatedness || values || of || strain || V2M29 || ( || T || ) || to || Phycicoccus || dokdonensis || DS || - || 8 || ( || T || ) || and || Phycicoccus || bigeumensis || DSM || 19264 || ( || T || ) || were || 32 || . || 5 || + || / || - || 3 || . || 3 || % || and || 29 || . || 2 || + || / || - || 2 || . || 3 || % || , || respectively || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
92
|
[
"Based",
"on",
"these",
"results",
",",
"it",
"is",
"concluded",
"that",
"strain",
"V2M29",
"(",
"T",
")",
"represents",
"a",
"novel",
"species",
"of",
"the",
"genus",
"Phycicoccus",
",",
"for",
"which",
"the",
"name",
"Phycicoccus",
"cremeus",
"sp",
".",
"nov",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Based || on || these || results || , || it || is || concluded || that || strain || V2M29 || ( || T || ) || represents || a || novel || species || of || the || genus || Phycicoccus || , || for || which || the || name || Phycicoccus || cremeus || sp || . || nov || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
93
|
[
"is",
"proposed",
",",
"with",
"V2M29",
"(",
"T",
")",
"(",
"=",
"CGMCC",
"1",
".",
"6963",
"(",
"T",
")",
"=",
"NBRC",
"104261",
"(",
"T",
")",
")",
"as",
"the",
"type",
"strain",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
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0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: is || proposed || , || with || V2M29 || ( || T || ) || ( || = || CGMCC || 1 || . || 6963 || ( || T || ) || = || NBRC || 104261 || ( || T || ) || ) || as || the || type || strain || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
94
|
[
"Streptomyces",
"hyderabadensis",
"sp",
".",
"nov",
".",
",",
"an",
"actinomycete",
"isolated",
"from",
"soil",
"."
] |
[
1,
2,
2,
2,
2,
2,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Streptomyces || hyderabadensis || sp || . || nov || . || , || an || actinomycete || isolated || from || soil || .
Tokens:
|
NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None
|
95
|
[
"A",
"novel",
"actinomycete",
",",
"designated",
"strain",
"OU",
"-",
"40",
"(",
"T",
")",
",",
"was",
"isolated",
"from",
"farm",
"soil",
"collected",
"from",
"the",
"Hyderabad",
"region",
"of",
"Andhra",
"Pradesh",
",",
"southern",
"India",
"."
] |
[
0,
0,
0,
0,
0,
0,
1,
2,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: A || novel || actinomycete || , || designated || strain || OU || - || 40 || ( || T || ) || , || was || isolated || from || farm || soil || collected || from || the || Hyderabad || region || of || Andhra || Pradesh || , || southern || India || .
Tokens:
|
None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
96
|
[
"The",
"strain",
"was",
"found",
"to",
"have",
"morphological",
"and",
"chemotaxonomic",
"characteristics",
"typical",
"of",
"species",
"of",
"the",
"genus",
"Streptomyces",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: The || strain || was || found || to || have || morphological || and || chemotaxonomic || characteristics || typical || of || species || of || the || genus || Streptomyces || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
97
|
[
"Phylogenetic",
"analysis",
"based",
"on",
"16S",
"rRNA",
"gene",
"sequences",
"indicated",
"that",
"strain",
"OU",
"-",
"40",
"(",
"T",
")",
"belonged",
"to",
"the",
"genus",
"Streptomyces",
",",
"and",
"was",
"related",
"most",
"closely",
"to",
"Streptomyces",
"pactum",
"NBRC",
"13433",
"(",
"T",
")",
"(",
"99",
".",
"0",
"%",
"sequence",
"similarity",
")",
",",
"Streptomyces",
"olivaceus",
"NBRC",
"12805",
"(",
"T",
")",
"(",
"99",
".",
"0",
"%",
")",
"and",
"Streptomyces",
"parvulus",
"NBRC",
"13193",
"(",
"T",
")",
"(",
"98",
".",
"8",
"%",
")",
"."
] |
[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
1,
2,
2,
0,
0,
0,
0,
0,
0,
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0,
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0,
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0,
1,
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0,
1,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Phylogenetic || analysis || based || on || 16S || rRNA || gene || sequences || indicated || that || strain || OU || - || 40 || ( || T || ) || belonged || to || the || genus || Streptomyces || , || and || was || related || most || closely || to || Streptomyces || pactum || NBRC || 13433 || ( || T || ) || ( || 99 || . || 0 || % || sequence || similarity || ) || , || Streptomyces || olivaceus || NBRC || 12805 || ( || T || ) || ( || 99 || . || 0 || % || ) || and || Streptomyces || parvulus || NBRC || 13193 || ( || T || ) || ( || 98 || . || 8 || % || ) || .
Tokens:
|
None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None
|
98
|
[
"Strain",
"OU",
"-",
"40",
"(",
"T",
")",
"could",
"be",
"distinguished",
"from",
"the",
"type",
"strains",
"of",
"its",
"closest",
"phylogenetic",
"relatives",
"based",
"on",
"levels",
"of",
"DNA",
"-",
"DNA",
"relatedness",
"and",
"comparison",
"of",
"morphological",
"and",
"phenotypic",
"data",
"."
] |
[
0,
1,
2,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: Strain || OU || - || 40 || ( || T || ) || could || be || distinguished || from || the || type || strains || of || its || closest || phylogenetic || relatives || based || on || levels || of || DNA || - || DNA || relatedness || and || comparison || of || morphological || and || phenotypic || data || .
Tokens:
|
None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None
|
99
|
[
"It",
"is",
"therefore",
"concluded",
"that",
"strain",
"OU",
"-",
"40",
"(",
"T",
")",
"represents",
"a",
"novel",
"species",
"of",
"the",
"genus",
"Streptomyces",
",",
"for",
"which",
"the",
"name",
"Streptomyces",
"hyderabadensis",
"sp",
".",
"nov",
"."
] |
[
0,
0,
0,
0,
0,
0,
1,
2,
2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
1,
2,
2,
2,
2,
2
] |
affirmative_bottom_list
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence {{"\"NCBI Taxonomy token\""}} if it is an NCBI Taxonomy token, else {{"\"None\""}} if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: {{ tokens | join(" || ")}}
Tokens:
|||
{% set new_list = [] %}
{% for ner_tag in ner_tags %}
{% if ner_tag > 0 %}
{{ new_list.append("NCBI Taxonomy token")|default("", True) }}
{% elif ner_tag <= 0%}
{{ new_list.append("None")|default("", True) }}
{% endif %}
{% endfor %}
{{ new_list | join(" || ") }}
|
Given the sentence below with tokens separated with the character || , identify the tokens that are species or organisms of the NCBI Taxonomy (acronyms, common names, abbreviations and scientific names of the species in the NCBI Taxonomy. E.g., Escherichia coli, E. coli).
Indicate for each token in the sentence "NCBI Taxonomy token" if it is an NCBI Taxonomy token, else "None" if it is not an NCBI Taxonomy token. Please separate each token with the character || as in the original sentence.
Sentence: It || is || therefore || concluded || that || strain || OU || - || 40 || ( || T || ) || represents || a || novel || species || of || the || genus || Streptomyces || , || for || which || the || name || Streptomyces || hyderabadensis || sp || . || nov || .
Tokens:
|
None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || None || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token || NCBI Taxonomy token
|
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