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Title 1 Autophagy promotes organelle clearance and organized cell separation of living root cap 2 cells in Arabidopsis thaliana 3 4 Running title 5 Role of autophagy in root cap 6 7 Authors 8 Tatsuaki Goh1,§,*, Kaoru Sakamoto1,§, Pengfei Wang2, Saki Kozono1, Koki Ueno1, 9 Shunsuke Miyashima1, Koichi Toy...
2022
Autophagy promotes organelle clearance and organized cell separation of living root cap cells in
10.1101/2022.02.16.480624
[ "Goh Tatsuaki", "Sakamoto Kaoru", "Wang Pengfei", "Kozono Saki", "Ueno Koki", "Miyashima Shunsuke", "Toyokura Koichi", "Fukaki Hidehiro", "Kang Byung-Ho", "Nakajima Keiji" ]
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1 Profiles of secoiridoids and alkaloids in tissue of susceptible and resistant green ash progeny reveal patterns of induced responses to emerald ash borer in Fraxinus pennsylvanica Robert K. Stanley1, David W. Carey2, Mary E. Mason2, Therese M. Poland3, Jennifer L. Koch2, A. Daniel Jones4, Jeanne Romero-Sever...
2022
Profiles of secoiridoids and alkaloids in tissue of susceptible and resistant green ash progeny reveal patterns of induced responses to emerald ash borer in
10.1101/2022.05.18.492370
[ "Stanley Robert K.", "Carey David W.", "Mason Mary E.", "Poland Therese M.", "Koch Jennifer L.", "Jones A. Daniel", "Romero-Severson Jeanne" ]
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1 Dose-dependent dissociation of pro-cognitive effects of donepezil on attention and cognitive flexibility in rhesus monkeys Seyed A. Hassani1, Sofia Lendor2, Adam Neumann1, Kanchan Sinha Roy2, Kianoush Banaie Boroujeni1, Kari L. Hoffman1, Janusz Pawliszyn2*, Thilo Womelsdorf1,3* 1Department of Psychology, V...
2021
Dose-dependent dissociation of pro-cognitive effects of donepezil on attention and cognitive flexibility in rhesus monkeys
10.1101/2021.08.09.455743
[ "Hassani Seyed A.", "Lendor Sofia", "Neumann Adam", "Roy Kanchan Sinha", "Boroujeni Kianoush Banaie", "Hoffman Kari L.", "Pawliszyn Janusz", "Womelsdorf Thilo" ]
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P a g e 1 | 60 1 The Nerve Growth Factor IB-like Receptor Nurr1 (NR4A2) Recruits CoREST 2 Transcription Repressor Complexes to Silence HIV Following Proviral Reactivation 3 in Microglial Cells 4 5 Fengchun Ye*, David Alvarez-Carbonell, Kien Nguyen, Saba Valadkhan, Konstantin 6 Leskov, Yoelvis Garcia-Mesa, Sheetal S...
2021
The Nerve Growth Factor IB-like Receptor Nurr1 (NR4A2) Recruits CoREST Transcription Repressor Complexes to Silence HIV Following Proviral Reactivation in Microglial Cells
10.1101/2021.11.16.468784
[ "Ye Fengchun", "Alvarez-Carbonell David", "Nguyen Kien", "Valadkhan Saba", "Leskov Konstantin", "Garcia-Mesa Yoelvis", "Sreeram Sheetal", "Karn Jonathan" ]
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Universal features shaping organelle gene retention Konstantinos Giannakis1,∗, Samuel J. Arrowsmith2,∗, Luke Richards3, Sara Gasparini4, Joanna M. Chustecki5, Ellen C. Røyrvik6, Iain G. Johnston1,7,† 1 Department of Mathematics, University of Bergen, Norway; 2 G´en´etique mol´eculaire, g´enomique, microbiologie, Univer...
2021
Universal features shaping organelle gene retention
10.1101/2021.10.27.465964
[ "Giannakis Konstantinos", "Arrowsmith Samuel J.", "Richards Luke", "Gasparini Sara", "Chustecki Joanna M.", "Røyrvik Ellen C.", "Johnston Iain G." ]
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1 The emergence of new lineages of the Monkeypox virus could affect the 2022 outbreak. Mayla Abrahim1, Alexandro Guterres1, Patrícia Cristina da Costa Neves1 and Ana Paula Dinis Ano Bom1. 1 Laboratório de Tecnologia Imunológica, Instituto de Tecnologia em Imunobiológicos, Vice-Diretoria de Desenvolvimento T...
2022
The emergence of new lineages of the Monkeypox virus could affect the 2022 outbreak
10.1101/2022.07.07.498743
[ "Abrahim Mayla", "Guterres Alexandro", "da Costa Neves Patrícia Cristina", "Ano Bom Ana Paula Dinis" ]
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Journal, Vol. XXI, No. 1, 1-5, 2013 Additional note Whole-brain modeling of the differential influences of Amyloid-Beta and Tau in Alzheimer‘s Disease Gustavo Patow1,4, Leon Stefanovski2,3, Petra Ritter2,3, Gustavo Deco4 and Xenia Kobeleva5,6, for the Alzheimer’s Disease Neuroimaging Initiative∗ Abstract Alzheimer’s Dis...
2022
Whole-brain modeling of the differential influences of Amyloid-Beta and Tau in Alzheimer’s Disease
10.1101/2022.10.30.514365
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BRAFV600E Expression in Mouse Neuroglial Progenitors Increase Neuronal Excitability, Cause Appearance of Balloon-like cells, Neuronal Mislocalization, and Inflammatory Immune response. Roman U. Goz1,2, Ari Silas1, Sara Buzel1, Joseph J. LoTurco1 1Departament of Physiology and Neurobiology, University of Connecticut...
2019
BRAFV600E Expression in Mouse Neuroglial Progenitors Increase Neuronal Excitability, Cause Appearance of Balloon-like cells, Neuronal Mislocalization, and Inflammatory Immune response
10.1101/544973
[ "Goz Roman U.", "Silas Ari", "Buzel Sara", "LoTurco Joseph J." ]
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Magnitude and Correlates of Caesarean Section in Urban and Rural Areas: A Multivariate Study in Vietnam Myriam de Loenzien1*, ORCID 0000-0001-7121-0185 Clémence Schantz1¶, Bich Ngoc Luu2¶, Alexandre Dumont1¶ 1 Centre Population et Développement UMR 196, Institut de Recherche pour le Développement, Université Paris ...
2019
Magnitude and Correlates of Caesarean Section in Urban and Rural Areas: A Multivariate Study in Vietnam
10.1101/554964
[ "Loenzien Myriam de", "Schantz Clémence", "Luu Bich Ngoc", "Dumont Alexandre" ]
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Viral fitness determines the magnitude of transcriptomic and epigenomic reprogramming of defense responses in plants Régis L. Corrêa,1,2,3,6,* Alejandro Sanz-Carbonell,1 Zala Kogej,1,4 Sebastian Y. Müller,3 Sara López-Gomollón,3 Gustavo Gómez,1 David C. Baulcombe,3 Santiago F. Elena1,5,* 1Instituto de Biología ...
2019
Viral fitness determines the magnitude of transcriptomic and epigenomic reprogramming of defense responses in plants
10.1101/2019.12.26.888768
[ "Corrêa Régis L.", "Sanz-Carbonell Alejandro", "Kogej Zala", "Müller Sebastian Y.", "López-Gomollón Sara", "Gómez Gustavo", "Baulcombe David C.", "Elena Santiago F." ]
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Integrated sample inactivation, amplification, and Cas13-based detection of SARS-CoV-2 Jon Arizti-Sanz1,2,*, Catherine A. Freije1,3,*, Alexandra C. Stanton1,3, Chloe K. Boehm1, Brittany A. Petros1,2,4, Sameed Siddiqui1,5, Bennett M. Shaw1,6, Gordon Adams1, Tinna-Solveig F. Kosoko- Thoroddsen1, Molly E. Kemball1, ...
2020
Integrated sample inactivation, amplification, and Cas13-based detection of SARS-CoV-2
10.1101/2020.05.28.119131
[ "Arizti-Sanz Jon", "Freije Catherine A.", "Stanton Alexandra C.", "Boehm Chloe K.", "Petros Brittany A.", "Siddiqui Sameed", "Shaw Bennett M.", "Adams Gordon", "Kosoko-Thoroddsen Tinna-Solveig F.", "Kemball Molly E.", "Gross Robin", "Wronka Loni", "Caviness Katie", "Hensley Lisa E.", "Be...
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Spatial organization of nuclear pores in Xenopus laevis oocytes Linda Ravazzano a, Silvia Bonfanti a,b, Roberto Guerra a, Fabien Montel c, Caterina A. M. La Portad,e, Stefano Zapperi∗,a,b Received Xth XXXXXXXXXX 20XX, Accepted Xth XXXXXXXXX 20XX First published on the web Xth XXXXXXXXXX 200X DOI: 10.1039/b000000x Nucle...
2021
Spatial organization of nuclear pores in oocytes
10.1101/2021.09.01.458492
[ "Ravazzano Linda", "Bonfanti Silvia", "Guerra Roberto", "Montel Fabien", "La Porta Caterina A. M.", "Zapperi Stefano" ]
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Model balancing: consistent in-vivo kinetic constants and metabolic states obtained by convex optimisation Wolfram Liebermeister1,2 1 Universit´e Paris-Saclay, INRAE, MaIAGE, 78350, Jouy-en-Josas, France 2 Institut f¨ur Biochemie, Charit´e – Universit¨atsmedizin Berlin, Germany Abstract Enzyme kinetic constants in vivo...
2019
Model balancing: consistent kinetic constants and metabolic states obtained by convex optimisation
10.1101/2019.12.23.887166
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1 Diving Behavior Reveals Humidity Sensing Ability of Water Deprived Planarians Yu Pei1, Renzhi Qian1, Yuan yan1, Yixuan Zhang1, Liyuan Tan1, Xinran Li1, Chenxu Lu1, Yuxuan Chen1, Yuanwei Chi1, Kun Hao1, Zhen Xu1, Guang Yang1, Zilun Shao1, Yuhao Wang1 and Kaiyuan Huang1,2,3 1College of Biological Science, China Agricul...
2022
Diving Behavior Reveals Humidity Sensing Ability of Water Deprived Planarians
10.1101/2022.10.12.511880
[ "Pei Yu", "Qian Renzhi", "yan Yuan", "Zhang Yixuan", "Tan Liyuan", "Li Xinran", "Lu Chenxu", "Chen Yuxuan", "Chi Yuanwei", "Hao Kun", "Xu Zhen", "Yang Guang", "Shao Zilun", "Wang Yuhao", "Huang Kaiyuan" ]
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Title: Whole-genome fingerprint of the DNA methylome during chemically induced 1 differentiation of the human AML cell line HL-60/S4 2 3 Running title: DNAme of HL-60/S4 differentiation 4 5 Authors: Enoch Boasiako Antwi1,2, Ada Olins3, Vladimir B Teif4, Matthias Bieg1,5,7, Tobias 6 Bauer1,5, Zuguang G...
2019
Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the human AML cell line HL-60/S4
10.1101/608695
[ "Antwi Enoch Boasiako", "Olins Ada", "Teif Vladimir B", "Bieg Matthias", "Bauer Tobias", "Gu Zuguang", "Brors Benedikt", "Eils Roland", "Olins Donald", "Ishaque Naveed" ]
creative-commons
Brain tissue properties and morphometry assessment after chronic complete spinal cord injury Andreas Hug MD1, Adriano Bernini2, Haili Wang1, Antoine Lutti PhD2, Johann M.E. Jende MD4, Markus Böttinger MD1, Marc-André Weber MD3,5, Norbert Weidner MD1, and Simone Lang PhD1 1Spinal Cord Injury Center, Heidelberg Univ...
2019
Brain tissue properties and morphometry assessment after chronic complete spinal cord injury
10.1101/547620
[ "Hug Andreas", "Bernini Adriano", "Wang Haili", "Lutti Antoine", "Jende Johann M.E.", "Böttinger Markus", "Weber Marc-André", "Weidner Norbert", "Lang Simone" ]
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1 Bacterial diversity in deep-sea sediments under influence of asphalt seep at the São Paulo Plateau 1 Luciano Lopes Queirozab, Amanda Gonçalves Bendiaa, Rubens Tadeu Delgado Duartec, Diego Assis 2 das Graçasd, Artur Luiz da Costa da Silvad, Cristina Rossi Nakayamae, Paulo Yukio Sumidaa, Andre O. 3 S. Limaf, Y...
2019
Bacterial diversity in deep-sea sediments under influence of asphalt seep at the São Paulo Plateau
10.1101/753616
[ "Queiroz Luciano Lopes", "Gonçalves Bendia Amanda", "Duarte Rubens Tadeu Delgado", "das Graças Diego Assis", "Costa da Silva Artur Luiz da", "Nakayama Cristina Rossi", "Sumida Paulo Yukio", "Lima Andre O. S.", "Nagano Yuriko", "Fujikura Katsunori", "Kitazato Hiroshi", "Pellizari Vivian Helena"...
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Effect of victim relatedness on cannibalistic behaviour of ladybird beetle, Menochilus 1 sexmaculatus Fabricius (Coleoptera: Coccinellidae) 2 Tripti Yadav1, Omkar2, and Geetanjali Mishra3* 3 Author’s details 4 1. Tripti Yadav: Research Scholar, Ladybird Research Laboratory, Department of 5 Zoology, Univers...
2022
Effect of victim relatedness on cannibalistic behaviour of ladybird beetle, Fabricius (Coleoptera: Coccinellidae)
10.1101/2022.09.30.510267
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Graphsite: Ligand-binding site classification using Deep Graph Neural Network Wentao Shi1, Manali Singha2, Limeng Pu3, J. Ramanujam1,3, Michal Brylinski2,3* 1 Department of Electrical and Computer Engineering, Louisiana State University, Baton Rouge, Louisiana, United States of America 2 Department of Biological Scienc...
2021
Graphsite: Ligand-binding site classification using Deep Graph Neural Network
10.1101/2021.12.06.471420
[ "Shi Wentao", "Singha Manali", "Pu Limeng", "Ramanujam J.", "Brylinski Michal" ]
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1 1 Title: 2 The absence of C-5 DNA methylation in Leishmania donovani allows DNA enrichment from complex 3 samples 4 Authors: 5 Cuypers B1, 2#, Dumetz F1*#, Meysman P2, Laukens K2, De Muylder G1, Dujardin J-C1, 3 and Domagalska 6 MA1 7 Affiliations: 8 1 Molecular Parasitology, Institute of Tropica...
2020
The absence of C-5 DNA methylation in allows DNA enrichment from complex samples
10.1101/747063
[ "Cuypers B", "Dumetz F", "Meysman P", "Laukens K", "De Muylder G", "Dujardin J-C", "Domagalska MA" ]
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1 A parasite’s paradise: Biotrophic species prevail oomycete 1 community composition in tree canopies 2 Running title: Biotrophic oomycetes in tree canopies 3 Robin-Tobias Jauss1*, Susanne Walden2, Anna Maria Fiore-Donno2, Stefan Schaffer3,4, 4 Ronny Wolf3, Kai Feng2,5,6, Michael Bonkowski2, Martin Schlegel1...
2021
A parasite’s paradise: Biotrophic species prevail oomycete community composition in tree canopies
10.1101/2021.02.17.431613
[ "Jauss Robin-Tobias", "Walden Susanne", "Fiore-Donno Anna Maria", "Schaffer Stefan", "Wolf Ronny", "Feng Kai", "Bonkowski Michael", "Schlegel Martin" ]
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1 Population-level survey of loss-of-function mutations revealed that background dependent fitness genes are rare and functionally related in yeast Elodie Caudal1, Anne Friedrich1, Arthur Jallet1, Marion Garin1, Jing Hou1,* and Joseph Schacherer1,2,* 1. Université de Strasbourg, CNRS, GM...
2021
Population-level survey of loss-of-function mutations revealed that background dependent fitness genes are rare and functionally related in yeast
10.1101/2021.08.25.457624
[ "Caudal Elodie", "Friedrich Anne", "Jallet Arthur", "Garin Marion", "Hou Jing", "Schacherer Joseph" ]
creative-commons
QTL mapping in an interspecific sorghum population uncovers candidate regulators of salinity tolerance Ashley N. Hostetler1, Rajanikanth Govindarajulu1,2, Jennifer S. Hawkins1 West Virginia University1 53 Campus Drive Department of Biology West Virginia University Morgantown, WV 26505 Eurofins Lanca...
2020
QTL mapping in an interspecific sorghum population uncovers candidate regulators of salinity tolerance
10.1101/2020.08.05.238972
[ "Hostetler Ashley N.", "Govindarajulu Rajanikanth", "Hawkins Jennifer S." ]
creative-commons
1 Ecological specialization, rather than the island rule, explains morphological diversification in an ancient radiation of geckos Héctor Tejero-Cicuéndez1*#, Marc Simó-Riudalbas1*, Iris Menéndez2,3, Salvador Carranza1 1 Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la ...
2021
Ecological specialization, rather than the island rule, explains morphological diversification in an ancient radiation of geckos
10.1101/2021.07.30.454424
[ "Tejero-Cicuéndez Héctor", "Simó-Riudalbas Marc", "Menéndez Iris", "Carranza Salvador" ]
creative-commons
1 Feasibility Analyses and Experimental Confirmation of Dove Prism Based Dual-fiberscope Rotary Joint Yuehan Liu1, Hyeon-Cheol Park2, Haolin Zhang2, and Xingde Li2 1Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218, USA 2Department of Biomedical Engineering, Johns ...
2022
Feasibility Analyses and Experimental Confirmation of Dove Prism Based Dual-fiberscope Rotary Joint
10.1101/2022.09.25.509388
[ "Liu Yuehan", "Park Hyeon-Cheol", "Zhang Haolin", "Li Xingde" ]
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1 Drosophila immunity: The Drosocin gene encodes two host defence pep- 1 tides with pathogen-specific roles 2 M.A. Hanson1*, S. Kondo2, and B. Lemaitre1* 3 1 Global Health Institute, School of Life Science, École Polytechnique Fédérale de Lausanne 4 (EPFL), Lausanne, Switzerland. 5 2 Invertebrate Genetics L...
2022
immunity: The gene encodes two host defence peptides with pathogen-specific roles
10.1101/2022.04.21.489012
[ "Hanson M.A.", "Kondo S.", "Lemaitre B." ]
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Divergence, gene flow and the origin of leapfrog geographic distributions: The history of color pattern variation in Phyllobates poison-dart frogs Running Head: Poison frog leapfrog distribution Roberto Márquez1,2,*, Tyler P. Linderoth3,†, Daniel Mejía-Vargas2, Rasmus Nielsen3,4,5, Adolfo Amézquita,2,‡ Marcus R. Kronfo...
2020
Divergence, gene flow and the origin of leapfrog geographic distributions: The history of color pattern variation in poison-dart frogs
10.1101/2020.02.21.960005
[ "Márquez Roberto", "Linderoth Tyler P.", "Mejía-Vargas Daniel", "Nielsen Rasmus", "Amézquita Adolfo", "Kronforst Marcus R." ]
creative-commons
Harmoni: a Method for Eliminating Spurious Interactions due to the Harmonic Components in Neuronal Data Mina Jamshidi Idajia,b,c,∗, Juanli Zhanga,d, Tilman Stephania,b, Guido Noltee, Klaus-Robert M¨ullerc,f,g,h, Arno Villringera,i, Vadim V. Nikulina,j,k,∗∗ aNeurology Department, Max Planck Institute for Human Cognitive...
2021
Harmoni: a Method for Eliminating Spurious Interactions due to the Harmonic Components in Neuronal Data
10.1101/2021.10.06.463319
[ "Idaji Mina Jamshidi", "Zhang Juanli", "Stephani Tilman", "Nolte Guido", "Müller Klaus-Robert", "Villringer Arno", "Nikulin Vadim V." ]
creative-commons
ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional 1 metagenomics 2 Rémi Gschwind1,, Svetlana Ugarcina Perovic2, Marie Petitjean1, Julie Lao1, Luis Pedro Coelho2, 3 Etienne Ruppé1* 4 1 Université Paris Cité and Université Sorbonne Paris Nord, Inserm, IAME, F-75018 Paris, 5 Fra...
2022
ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics
10.1101/2022.10.19.512667
[ "Gschwind Rémi", "Perovic Svetlana Ugarcina", "Petitjean Marie", "Lao Julie", "Coelho Luis Pedro", "Ruppé Etienne" ]
creative-commons
Multimodal brain imaging study of 19,825 participants reveals adverse effects of moderate drinking One Sentence Summary: Moderate alcohol intake, consuming two or more units of alcohol per day, has negative effects on brain health. Remi Daviet, PhD1, Gökhan Aydogan, PhD2, Kanchana Jagannathan, MS3, Nathanie...
2020
Multimodal brain imaging study of 19,825 participants reveals adverse effects of moderate drinking
10.1101/2020.03.27.011791
[ "Daviet Remi", "Aydogan Gökhan", "Jagannathan Kanchana", "Spilka Nathaniel", "Koellinger Philipp", "Kranzler Henry R.", "Nave Gideon", "Wetherill Reagan R." ]
creative-commons
1 Title page 1 2 Neuronal mechanism of a BK channelopathy in absence epilepsy and movement disorders 3 Ping Dong1, Yang Zhang1, Mohamad A. Mikati2,3, Jianmin Cui4, Huanghe Yang1,2,* 4 1Department of Biochemistry, Duke University Medical Center, Durham, NC 27710, USA 5 2Department of Neurobiology, Duke Uni...
2021
Neuronal mechanism of a BK channelopathy in absence epilepsy and movement disorders
10.1101/2021.06.30.450615
[ "Dong Ping", "Zhang Yang", "Mikati Mohamad A.", "Cui Jianmin", "Yang Huanghe" ]
null
RESEARCH ARTICLE Imaging-based evaluation of pathogenicity by novel DNM2 variants associated with centronuclear myopathy Kenshiro Fujise1, Mariko Okubo2,3, Tadashi Abe1, Hiroshi Yamada1, Kohji Takei1, Ichizo Nishino2, *Tetsuya Takeda1 and Satoru Noguchi2 1Graduate School of Medicine, Dentistry and Pharmace...
2021
Imaging-based evaluation of pathogenicity by novel associated with centronuclear myopathy
10.1101/2021.03.01.433478
[ "Fujise Kenshiro", "Okubo Mariko", "Abe Tadashi", "Yamada Hiroshi", "Takei Kohji", "Nishino Ichizo", "Takeda Tetsuya", "Noguchi Satoru" ]
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1 The branched chain aminotransferase IlvE promotes growth, stress resistance and 1 pathogenesis of Listeria monocytogenes 2 Karla D. Passalacquaa*#, Tianhui Zhoua*, Tracy A. Washingtonb, Basel H. Abuaitaa, Abraham 3 L. Sonensheinb, Mary X.D. O’Riordana# 4 5 aUniversity of Michigan Medical School, Depart...
2020
The branched chain aminotransferase IlvE promotes growth, stress resistance and pathogenesis of
10.1101/2020.01.31.929828
[ "Passalacqua Karla D.", "Zhou Tianhui", "Washington Tracy A.", "Abuaita Basel H.", "Sonenshein Abraham L.", "O’Riordan Mary X.D." ]
null
Topology and cleavage of astrotactins 1 Murine astrotactins 1 and 2 have similar membrane topology and mature via endoproteolytic cleavage catalyzed by signal peptidase Patricia Lara1, Åsa Tellgren-Roth1, Hourinaz Behesti2, Zachi Horn2, Nina Schiller1, Karl Enquist1, Malin Cammenberg1, Amanda Liljenström1, M...
2019
Murine astrotactins 1 and 2 have similar membrane topology and mature via endoproteolytic cleavage catalyzed by signal peptidase
10.1101/493858
[ "Lara Patricia", "Tellgren-Roth Åsa", "Behesti Hourinaz", "Horn Zachi", "Schiller Nina", "Enquist Karl", "Cammenberg Malin", "Liljenström Amanda", "Hatten Mary E.", "von Heijne Gunnar", "Nilsson IngMarie" ]
creative-commons
The potential role of collagens in congenital Zika syndrome: A systems biology approach Renato S Aguiar1,2*, Fabio Pohl3*, Guilherme L Morais4*, Fabio CS Nogueira5,6*, Joseane B Carvalho4*, Letícia Guida7*, Luis WP Arge4, Adriana Melo8, Maria EL Moreira7, Daniela P Cunha7, Leonardo Gomes7, Elyzabeth A Portari7, E...
2019
The potential role of collagens in congenital Zika syndrome: A systems biology approach
10.1101/541268
[ "Aguiar Renato S", "Pohl Fabio", "Morais Guilherme L", "Nogueira Fabio CS", "Carvalho Joseane B", "Guida Letícia", "Arge Luis WP", "Melo Adriana", "Moreira Maria EL", "Cunha Daniela P", "Gomes Leonardo", "Portari Elyzabeth A", "Velasquez Erika", "Melani Rafael D", "Pezzuto Paula", "Cas...
creative-commons
1 Genetic association of FMRP targets with psychiatric disorders Nicholas E Clifton1,2, Elliott Rees2, Peter A Holmans2, Antonio F. Pardiñas2, Janet C Harwood2, Arianna Di Florio2, George Kirov2, James TR Walters2, Michael C O’Donovan2, Michael J Owen2, Jeremy Hall1,2, Andrew J Pocklington2 1. Neuroscience a...
2020
Genetic association of FMRP targets with psychiatric disorders
10.1101/2020.02.21.952226
[ "Clifton Nicholas E", "Rees Elliott", "Holmans Peter A", "Pardiñas Antonio F.", "Harwood Janet C", "Di Florio Arianna", "Kirov George", "Walters James TR", "O’Donovan Michael C", "Owen Michael J", "Hall Jeremy", "Pocklington Andrew J" ]
creative-commons
Induction of hierarchy and time through one-dimensional probability space with certain topologies Shun Adachi∗ Department of Microbiology, Kansai Medical University, 2-5-1 Shin-machi, Hirakata, Osaka 573-1010, JAPAN (Dated: 13 September 2019) Background: In a previous study, the authors utilized a single dimensional op...
2019
Induction of hierarchy and time through one-dimensional probability space with certain topologies
10.1101/780882
null
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1 Coevolutionary Analysis and Perturbation-Based Network Modeling of the SARS-CoV-2 Spike Protein Complexes with Antibodies: Binding-Induced Control of Dynamics, Allosteric Interactions and Signaling Gennady M. Verkhivker,1,2 ‡ Luisa Di Paola3 1Keck Center for Science and Engineering, Schmid College...
2021
Coevolutionary Analysis and Perturbation-Based Network Modeling of the SARS-CoV-2 Spike Protein Complexes with Antibodies: Binding-Induced Control of Dynamics, Allosteric Interactions and Signaling
10.1101/2021.01.19.427320
[ "Verkhivker Gennady M.", "Di Paola Luisa" ]
null
1 Optogenetic actuator/ERK biosensor circuits identify MAPK network 1 nodes that shape ERK dynamics 2 3 4 5 Coralie Dessauges1, Jan Mikelson2, Maciej Dobrzyński1, Marc-Antoine Jacques1, 6 Agne Frismantiene1, Paolo Armando Gagliardi1, Mustafa Khammash2, Olivier Pertz1 7 8 1Institute of Cell Bio...
2022
Optogenetic actuator/ERK biosensor circuits identify MAPK network nodes that shape ERK dynamics
10.1101/2021.07.27.453955
[ "Dessauges Coralie", "Mikelson Jan", "Dobrzyński Maciej", "Jacques Marc-Antoine", "Frismantiene Agne", "Gagliardi Paolo Armando", "Khammash Mustafa", "Pertz Olivier" ]
creative-commons
1 Chelator sensing and lipopeptide interplay mediates molecular 1 interspecies interactions between soil bacilli and pseudomonads 2 3 Sofija Andric1*, Thibault Meyer1,Φ *, Augustin Rigolet1, Anthony Argüelles Arias1, Sébastien Steels1, 4 Grégory Hoff1,#, Monica Höfte2, René De Mot3, Andrea McCann4, Edwin ...
2021
Chelator sensing and lipopeptide interplay mediates molecular interspecies interactions between soil bacilli and pseudomonads
10.1101/2021.02.22.432387
[ "Andric Sofija", "Meyer Thibault", "Rigolet Augustin", "Arias Anthony Argüelles", "Steels Sébastien", "Hoff Grégory", "Höfte Monica", "De Mot René", "McCann Andrea", "De Pauw Edwin", "Ongena Marc" ]
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1 Trait-similarity and trait-hierarchy jointly determine co-occurrences of 1 resident and invasive ant species 2 3 Mark K. L. Wong*†1, Toby P. N. Tsang*2, Owen T. Lewis1 and Benoit Guénard2 4 5 *Mark K. L. Wong and Toby P. N. Tsang are joint first authors. 6 †Correspondence e-mail: mark.wong@zoo.ox.ac...
2020
Trait-similarity and trait-hierarchy jointly determine co-occurrences of resident and invasive ant species
10.1101/2020.02.05.935858
[ "Wong Mark K. L.", "Tsang Toby P. N.", "Lewis Owen T.", "Guénard Benoit" ]
creative-commons
1 Decoding across sensory modalities reveals common 1 supramodal signatures of conscious perception 2 3 Gaëtan Sanchez1,2,3, Thomas Hartmann1,2, Marco Fuscà1,2 , Gianpaolo Demarchi1,2 and 4 Nathan Weisz1,2 5 6 1 – Paris-Lodron Universität Salzburg, Centre for Cognitive Neuroscience and Division of Phys...
2019
Decoding across sensory modalities reveals common supramodal signatures of conscious perception
10.1101/115535
[ "Sanchez Gaëtan", "Hartmann Thomas", "Fuscà Marco", "Demarchi Gianpaolo", "Weisz Nathan" ]
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1 Development of a LAG-3 Immunohistochemistry Assay for Melanoma Lori Johnson, BS,* Bryan McCune, MD,* Darren Locke, PhD,†‡ Cyrus Hedvat, MD, PhD,†‡ John B. Wojcik, MD, PhD,† Caitlin Schroyer, BS,* Jim Yan, PhD,* Krystal Johnson, MD,* Angela Sanders-Cliette, MD,* Sujana Samala, MD,* Lloye M. Dillon, PhD,† Steven...
2022
Development of a LAG-3 Immunohistochemistry Assay for Melanoma
10.1101/2022.02.25.481964
[ "Johnson Lori", "McCune Bryan", "Locke Darren", "Hedvat Cyrus", "Wojcik John B.", "Schroyer Caitlin", "Yan Jim", "Johnson Krystal", "Sanders-Cliette Angela", "Samala Sujana", "Dillon Lloye M.", "Anderson Steven", "Shuster Jeffrey" ]
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1 A Mycobacterium tuberculosis effector targets mitochondrion, controls energy metabolism and limits cytochrome c exit. Marianne Martin1, Angelique deVisch3, Philippe Barthe3, Obolbek Turapov2, Talip Aydogan1, Laurène Heriaud3, Jerome Gracy3, Galina V. Mukamolova2, François Letourneur1*, Martin Cohen- Gonsaud...
2021
A effector targets mitochondrion, controls energy metabolism and limits cytochrome c exit
10.1101/2021.01.31.428746
[ "Martin Marianne", "deVisch Angelique", "Barthe Philippe", "Turapov Obolbek", "Aydogan Talip", "Heriaud Laurène", "Gracy Jerome", "Mukamolova Galina V.", "Letourneur François", "Cohen-Gonsaud Martin" ]
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The fine-scale recombination rate variation and associations with genomic features in a butterfly Aleix Palahí i Torres1,∗, Lars Höök1, Karin Näsvall1, Daria Shipilina1, Christer Wiklund2, Roger Vila3, Peter Pruisscher1 and Niclas Backström1 1Evolutionary Biology Program, Department of Ecology and Genetics (IEG), Uppsala...
2022
The fine-scale recombination rate variation and associations with genomic features in a butterfly
10.1101/2022.11.02.514807
[ "i Torres Aleix Palahí", "Höök Lars", "Näsvall Karin", "Shipilina Daria", "Wiklund Christer", "Vila Roger", "Pruisscher Peter", "Backström Niclas" ]
creative-commons
1 Short Title: Dominance interaction between fruits and shoots 1 2 The role of auxin and sugar signaling in dominance inhibition of inflorescence growth by 3 fruit load 4 5 Marc Goetz, Maia Rabinovich and Harley M. Smith1,2 6 CSIRO Agriculture and Food, Private Bag 2, Glen Osmond, South Australia 506...
2021
The role of auxin and sugar signaling in dominance inhibition of inflorescence growth by fruit load
10.1101/2021.02.12.430977
[ "Goetz Marc", "Rabinovich Maia", "Smith Harley M." ]
creative-commons
Article Substrate mediatedelastic coupling betweenmotile cells modulates inter-cellinteractions and enhances cell-cell contact Subhaya Bose1, Kinjal Dasbiswas1,†and Arvind Gopinath2,‡ Preprint 1 Departmentof Physics, University of California Merced,Merced,CA USA. 2 Departmentof Bioengineering,University of California M...
2021
Substrate mediated elastic coupling between motile cells modulates inter–cell interactions and enhances cell–cell contact
10.1101/2021.03.06.434234
[ "Bose Subhaya", "Dasbiswas Kinjal", "Gopinath Arvind" ]
creative-commons
Evolutionary trajectory of organelle-derived nuclear DNAs in the 1 Triticum/Aegilops complex species 2 Zhibin Zhanga#, Jing Zhaoa#, Juzuo Lia#, Jinyang Yaoa, Bin Wanga, Yiqiao Mab, Ning Lia, Tianya 3 Wanga, Hongyan Wangc, Bao Liua and Lei Gonga* 4 5 a Key Laboratory of Molecular Epigenetics of the Ministry ...
2022
Evolutionary trajectory of organelle-derived nuclear DNAs in the complex species
10.1101/2022.12.04.519011
[ "Zhang Zhibin", "Zhao Jing", "Li Juzuo", "Yao Jinyang", "Wang Bin", "Ma Yiqiao", "Li Ning", "Wang Tianya", "Wang Hongyan", "Liu Bao", "Gong Lei" ]
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1 Cooperative NF-κB and Notch1 signaling promotes macrophage-mediated MenaINV 1 expression in breast cancer 2 3 Camille L. Duran1,2, George S. Karagiannis2,3,4, Xiaoming Chen1,2, Ved P. Sharma1,2,3, David 4 Entenberg1,2,3, John S. Condeelis2,3,5,6*, Maja H. Oktay1,2,3* 5 6 1Department of Pathology, Al...
2023
Cooperative NF-κB and Notch1 signaling promotes macrophage-mediated MenaINV expression in breast cancer
10.1101/2023.01.03.522642
[ "Duran Camille L.", "Karagiannis George S.", "Chen Xiaoming", "Sharma Ved P.", "Entenberg David", "Condeelis John S.", "Oktay Maja H." ]
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1 Title: FK506-binding protein FklB is involved in biofilm formation through its peptidyl-prolyl isomerase activity Authors and affiliations: Chrysoula Zografou, Maria Dimou, Panagiotis Katinakis Laboratory of General and Agricultural Microbiology, Faculty of Crop Science, Agricultural University of Athens, Ier...
2020
FK506-binding protein FklB is involved in biofilm formation through its peptidyl-prolyl isomerase activity
10.1101/2020.02.01.930347
[ "Zografou Chrysoula", "Dimou Maria", "Katinakis Panagiotis" ]
creative-commons
1 MicroRNA775 Promotes Intrinsic Leaf Size and Reduces Cell Wall Pectin Level via a 1 Target Galactosyltransferase in Arabidopsis 2 3 He Zhang1, Zhonglong Guo1, Yan Zhuang2, Yuanzhen Suo3, Jianmei Du2, Zhaoxu Gao2, Jiawei 4 Pan1, Li Li1, Tianxin Wang1, Liang Xiao4, Genji Qin1, Yuling Jiao5, Huaqing Cai6, ...
2020
MicroRNA775 Promotes Intrinsic Leaf Size and Reduces Cell Wall Pectin Level via a Target Galactosyltransferase in
10.1101/2020.09.17.301705
[ "Zhang He", "Guo Zhonglong", "Zhuang Yan", "Suo Yuanzhen", "Du Jianmei", "Gao Zhaoxu", "Pan Jiawei", "Li Li", "Wang Tianxin", "Xiao Liang", "Qin Genji", "Jiao Yuling", "Cai Huaqing", "Li Lei" ]
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1 Leveraging omic features with F3UTER 1 enables identification of unannotated 2 3’UTRs for synaptic genes 3 Siddharth Sethi1,2, David Zhang2,3,4, Sebastian Guelfi2,5, Zhongbo Chen2,3,4, Sonia 4 Garcia-Ruiz2,3,4, Mina Ryten2,3,4*ᶲ, Harpreet Saini1*, Juan A. Botia2,6* 5 6 1. Astex Pharmaceuticals, 436 Cam...
2021
Leveraging omic features with F3UTER enables identification of unannotated 3’UTRs for synaptic genes
10.1101/2021.03.08.434412
[ "Sethi Siddharth", "Zhang David", "Guelfi Sebastian", "Chen Zhongbo", "Garcia-Ruiz Sonia", "Ryten Mina", "Saini Harpreet", "Botia Juan A." ]
creative-commons
Classification: Biological Sciences: Environmental Sciences Title: Exposure to environmental level pesticides stimulates and diversifies evolution in Escherichia coli towards greater antibiotic resistance Yue Xinga, Shuaiqi Wua, Yujie Mena,b,1 aDepartment of Civil and Environmental Engineering, University of Illino...
2019
Exposure to environmental level pesticides stimulates and diversifies evolution in towards greater antibiotic resistance
10.1101/665273
[ "Xing Yue", "Wu Shuaiqi", "Men Yujie" ]
creative-commons
Comparing Task-Relevant Information Across Different Methods of Extracting Functional Connectivity Sophie Benitez Stulza,d, Andrea Insabatoa,b, Gustavo Decoa,c, Matthieu Gilsona, Mario Sendend,e a Center for Brain and Cognition, Computational Neuroscience Group, Department of Information and Communication Technol...
2018
Comparing Task-Relevant Information Across Different Methods of Extracting Functional Connectivity
10.1101/509059
[ "Stulz Sophie Benitez", "Insabato Andrea", "Deco Gustavo", "Gilson Matthieu", "Senden Mario" ]
creative-commons
Mechanisms of up-regulation of Ubiquitin-Proteasome activity in the absence of NatA dependent N-terminal acetylation Ilia Kats1,2, Marc Kschonsak1,3, Anton Khmelinskii4, Laura Armbruster1,5, Thomas Ruppert1 and Michael Knop1,6,* 1 Zentrum für Molekulare Biologie der Universität Heidelberg (ZMBH), DKFZ-ZMBH Allianc...
2020
Mechanisms of up-regulation of Ubiquitin-Proteasome activity in the absence of NatA dependent N-terminal acetylation
10.1101/2020.03.23.003053
[ "Kats Ilia", "Kschonsak Marc", "Khmelinskii Anton", "Armbruster Laura", "Ruppert Thomas", "Knop Michael" ]
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1 Myomegalin regulates Hedgehog pathway by controlling PDE4D at the centrosome Hualing Peng1*, Jingyi Zhang1*, Amanda Ya1,3, Winston Ma1, Sammy Villa1, Shahar Sukenik2, Xuecai Ge1** 1Department of Molecular and Cell Biology, University of California, Merced, Merced, CA 95340 2Department of Chemistry and ...
2021
Myomegalin regulates Hedgehog pathway by controlling PDE4D at the centrosome
10.1101/2020.04.24.059923
[ "Peng Hualing", "Zhang Jingyi", "Ya Amanda", "Ma Winston", "Villa Sammy", "Sukenik Shahar", "Ge Xuecai" ]
creative-commons
1 Extracellular adenosine induces hypersecretion of IL-17A by T-helper 17 cells through the 1 adenosine A2a receptor to promote neutrophilic inflammation 2 3 Mieko Tokano1,2, Sho Matsushita1,3, Rie Takagi1, Toshimasa Yamamoto2, and Masaaki 4 Kawano1,* 5 6 1Department of Allergy and Immunology, Facul...
2021
Extracellular adenosine induces hypersecretion of IL-17A by T-helper 17 cells through the adenosine A2a receptor to promote neutrophilic inflammation
10.1101/2021.04.29.441713
[ "Tokano Mieko", "Matsushita Sho", "Takagi Rie", "Yamamoto Toshimasa", "Kawano Masaaki" ]
creative-commons
1 Neurotrophin signaling is modulated by specific transmembrane domain interactions María L. Franco1,4, Kirill D. Nadezhdin2,4, Taylor P. Light3, Sergey A. Goncharuk2, Andrea Soler-Lopez1, Fozia Ahmed3, Konstantin S. Mineev2, Kalina Hristova3, Alexander S. Arseniev2* and Marçal Vilar1* 1Unit of Molecular Basi...
2021
Neurotrophin signaling is modulated by specific transmembrane domain interactions
10.1101/2021.05.24.445441
[ "Franco María L.", "Nadezhdin Kirill D.", "Light Taylor P.", "Goncharuk Sergey A.", "Soler-Lopez Andrea", "Ahmed Fozia", "Mineev Konstantin S.", "Hristova Kalina", "Arseniev Alexander S.", "Vilar Marçal" ]
creative-commons
beta-blocker reverses inhibition of beta-2 adrenergic receptor resensitization by hypoxia Yu Sun1, Manveen K. Gupta1, Kate Stenson1, Maradumane L. Mohan1, Nicholas Wanner2, Kewal Asosingh2, Serpil Erzurum2 and Sathyamangla V. Naga Prasad1 Department of Cardiovascular and Metabolic Sciences1, and Inflammation an...
2020
beta-blocker reverses inhibition of beta-2 adrenergic receptor resensitization by hypoxia
10.1101/2020.09.17.301903
[ "Sun Yu", "Gupta Manveen K.", "Stenson Kate", "Mohan Maradumane L.", "Wanner Nicholas", "Asosingh Kewal", "Erzurum Serpil", "Naga Prasad Sathyamangla V." ]
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1 Small Molecule Inducers of Neuroprotective miR-132 Identified by HTS-HTS in Human 1 iPSC-derived Neurons 2 Lien D. Nguyen1,†, Zhiyun Wei1,2,†,*, M. Catarina Silva3, Sergio Barberán-Soler4, Rosalia 3 Rabinovsky1, Christina R. Muratore1, Jonathan M. S. Stricker1, Colin Hortman4, Tracy L. Young- 4 Pearse1, S...
2022
Small Molecule Inducers of Neuroprotective miR-132 Identified by HTS-HTS in Human iPSC-derived Neurons
10.1101/2022.11.01.514550
[ "Nguyen Lien D.", "Wei Zhiyun", "Silva M. Catarina", "Barberán-Soler Sergio", "Rabinovsky Rosalia", "Muratore Christina R.", "Stricker Jonathan M. S.", "Hortman Colin", "Young-Pearse Tracy L.", "Haggarty Stephen J.", "Krichevsky Anna M." ]
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Title: Morphological Landscapes from High Content Imaging Identify Optimal Priming Strategies that Enhance MSC Immunosuppression. Authors: Seth H. Andrewsab, Matthew W. Klinkerc, Steven R. Bauerc1, Ross A. Markleinab1. aSchool of Chemical, Materials and Biomedical Engineering, University of Georgia, Athens, GA, US...
2021
Morphological Landscapes from High Content Imaging Identify Optimal Priming Strategies that Enhance MSC Immunosuppression
10.1101/2021.02.23.432501
[ "Andrews Seth H.", "Klinker Matthew W.", "Bauer Steven R.", "Marklein Ross A." ]
creative-commons
Crowdsourcing digital health measures to predict Parkinson’s disease severity: the Parkinson’s Disease Digital Biomarker DREAM Challenge Solveig K. Sieberts​1​, Jennifer Schaff​2 ​, Marlena Duda​3​, Bálint Ármin Pataki​4​, Ming Sun​5​, Phil Snyder​1​, Jean-Francois Daneault​6,7​, Federico Parisi​6,8​, Gianluca ...
2020
Crowdsourcing digital health measures to predict Parkinson’s disease severity: the
10.1101/2020.01.13.904722
null
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Submitted Manuscript: Confidential Template revised February 2021 1 Title: Three-dimensional genome re-wiring in loci with Human Accelerated Regions Authors: Kathleen C. Keough1,2,3, Sean Whalen1, Fumitaka Inoue2,3†, Pawel F. Przytycki1^, Tyler Fair4,5, Chengyu Deng2,3, Marilyn Steyert4,5,6,7, Hane Ryu2,3, Ke...
2022
Three-dimensional genome re-wiring in loci with Human Accelerated Regions
10.1101/2022.10.04.510859
null
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1 Chromatin sensing by the auxiliary domains of KDM5C regulates its demethylase activity and is disrupted by X- linked intellectual disability mutations Fatima S. Ugur1,3, Mark J. S. Kelly2, and Danica Galonić Fujimori2,3,4* 1 Chemistry and Chemical Biology Graduate Program, 2 Department of Pharmaceutical ...
2022
Chromatin sensing by the auxiliary domains of KDM5C regulates its demethylase activity and is disrupted by X-linked intellectual disability mutations
10.1101/2022.01.13.476263
[ "Ugur Fatima S.", "Kelly Mark J. S.", "Fujimori Danica Galonić" ]
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Removal of rare amplicon sequence variants from 16S rRNA gene sequence surveys biases the interpretation of community structure data Patrick D. Schloss† † To whom correspondence should be addressed: 5 pschloss@umich.edu Department of Microbiology and Immunology University of Michigan Ann Arbor, MI 48109 Research articl...
2020
Removal of rare amplicon sequence variants from 16S rRNA gene sequence surveys biases the interpretation of community structure data
10.1101/2020.12.11.422279
null
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Why does a flying fish taxi on sea surface before take-off? A hydrodynamic interpretation Jian Deng,∗ Shuhong Wang, and Lingxin Zhang Department of Mechanics, Zhejiang University, Hangzhou 310027, People’s Republic of China. Xuerui Mao Department of Mechanical, Material and Manufacturing Engineering, the University of Not...
2019
Why does a flying fish taxi on sea surface before take-off? A hydrodynamic interpretation
10.1101/765560
[ "Deng Jian", "Wang Shuhong", "Zhang Lingxin", "Mao Xuerui" ]
creative-commons
Pushing the envelope: force balance in fission yeast closed mitosis Marcus A Begley 1, Christian Pagán Medina1, Parsa Zareiesfandabadi1,2, Matthew B Rapp1, Mary Williard Elting1,3* 1Department of Physics, North Carolina State University, Raleigh, NC, 2Present address: Department of Biology, Duke University, Durham, NC,...
2022
Pushing the envelope: force balance in fission yeast closed mitosis
10.1101/2022.12.28.522145
[ "Begley Marcus A", "Pagán Medina Christian", "Zareiesfandabadi Parsa", "Rapp Matthew B", "Elting Mary Williard" ]
creative-commons
  Diminished miRNA activity is associated with aberrant cytoplasmic  intron retention in ALS pathogenesis         Marija Petric-Howe​1,2​, Hamish Crerar​1,2​, Jacob Neeves​1,2​, Giulia E. Tyzack​1,2​,   Rickie Patani​1,2,# ​, Raphaëlle Luisier​5,#           1​The Francis Crick Institute, 1 Midland Road, London NW1 1A...
2021
Diminished miRNA activity is associated with aberrant cytoplasmic intron retention in ALS pathogenesis
10.1101/2021.01.27.428555
[ "Petric-Howe Marija", "Crerar Hamish", "Neeves Jacob", "Tyzack Giulia E.", "Patani Rickie", "Luisier Raphaëlle" ]
creative-commons
1 A Hyperactive Kunjin Virus NS3 Helicase Mutant Demonstrates Increased 1 Dissemination and Mortality in Mosquitoes 2 3 Kelly E. Du Pont,a Nicole R. Sexton,b,d Martin McCullagh,c Gregory D. Ebel,b,d and Brian 4 J. Geissb,d,e# 5 6 aDepartment of Chemistry, Colorado State University, Fort Collins, Colora...
2020
A Hyperactive Kunjin Virus NS3 Helicase Mutant Demonstrates Increased Dissemination and Mortality in Mosquitoes
10.1101/2020.05.26.117580
[ "Du Pont Kelly E.", "Sexton Nicole R.", "McCullagh Martin", "Ebel Gregory D.", "Geiss Brian J." ]
creative-commons
1 Biological condensates form percolated networks with molecular motion properties 1 distinctly different from dilute solutions 2 3 Zeyu Shen1, Bowen Jia1, Yang Xu1, Jonas Wessén2, Tanmoy Pal2, Hue Sun Chan2, 4 Shengwang Du3,4,7, and Mingjie Zhang1,5,6,* 5 6 1Division of Life Science, Hong Kong Univers...
2022
Biological condensates form percolated networks with molecular motion properties distinctly different from dilute solutions
10.1101/2022.07.20.500769
[ "Shen Zeyu", "Jia Bowen", "Xu Yang", "Wessén Jonas", "Pal Tanmoy", "Chan Hue Sun", "Du Shengwang", "Zhang Mingjie" ]
creative-commons
1 Title: Micronutrient supplements with iron promote disruptive protozoan and fungal 1 communities in the developing infant gut 2 3 Ana Popovic1,2, Celine Bourdon3,4, Pauline W. Wang5,6, David S. Guttman5,6, Sajid Soofi7, 4 Zulfiqar A. Bhutta4,7, Robert H. J. Bandsma3,4, John Parkinson1,2,8,* and Lisa G. Pe...
2021
Micronutrient supplements with iron promote disruptive protozoan and fungal communities in the developing infant gut
10.1101/2021.07.06.451346
[ "Popovic Ana", "Bourdon Celine", "Wang Pauline W.", "Guttman David S.", "Soofi Sajid", "Bhutta Zulfiqar A.", "Bandsma Robert H. J.", "Parkinson John", "Pell Lisa G." ]
creative-commons
Selective whole genome amplification as a tool to enrich specimens with low Treponema pallidum genomic DNA copies for whole genome 1 sequencing 2 3 Charles M. Thurlow,a# Sandeep J. Joseph,a Lilia Ganova-Raeva,b Samantha S. Katz,a Lara Pereira,a Cheng Chen,a Alyssa Debra,a Kendra 4 Vilfort,a Kimberly Workowski...
2021
Selective whole genome amplification as a tool to enrich specimens with low genomic DNA copies for whole genome sequencing
10.1101/2021.07.09.451864
[ "Thurlow Charles M.", "Joseph Sandeep J.", "Ganova-Raeva Lilia", "Katz Samantha S.", "Pereira Lara", "Chen Cheng", "Debra Alyssa", "Vilfort Kendra", "Workowski Kimberly", "Cohen Stephanie E.", "Reno Hilary", "Sun Yongcheng", "Burroughs Mark", "Sheth Mili", "Chi Kai-Hua", "Danavall Dami...
creative-commons
Page 1 sur 22 Aquatic long-term persistence of Francisella tularensis ssp. holarctica is 1 driven by water temperature and transition to a viable but non-culturable 2 state 3 Camille D. Brunet1, Julien Peyroux1,2, Léa Pondérand3,4, Stéphanie Bouillot3, Thomas Girard4, 4 Éric Faudry3, Max Maurin1,4, Yvan Cas...
2022
Aquatic long-term persistence of ssp. is driven by water temperature and transition to a viable but non-culturable state
10.1101/2022.02.18.480867
[ "Brunet Camille D.", "Peyroux Julien", "Pondérand Léa", "Bouillot Stéphanie", "Girard Thomas", "Faudry Éric", "Maurin Max", "Caspar Yvan" ]
creative-commons
1 Title 1 Genome-wide macroevolutionary signatures of key innovations in 2 butterflies colonizing new host plants 3 4 Authors 5 Rémi Allio1*, Benoit Nabholz1, Stefan Wanke2, Guillaume Chomicki3, Oscar A. Pérez- 6 Escobar4, Adam M. Cotton5, Anne-Laure Clamens6, Gaël J. Kergoat6, Felix A.H. Sperling7 & 7 F...
2020
Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plants
10.1101/2020.07.08.193086
[ "Allio Rémi", "Nabholz Benoit", "Wanke Stefan", "Chomicki Guillaume", "Pérez-Escobar Oscar A.", "Cotton Adam M.", "Clamens Anne-Laure", "Kergoat Gaël J.", "Sperling Felix A.H.", "Condamine Fabien L." ]
creative-commons
Unifying single-cell annotations based on the Cell Ontology Sheng Wang​1,2,*​, Angela Oliveira Pisco​3,*,#​, Aaron McGeever​3​, Maria Brbic​4​, Marinka Zitnik​4​, Spyros Darmanis​3​, Jure Leskovec​3,4​, Jim Karkanias​3​, Russ B. Altman​1,2,3, # 1​Department of Bioengineering, Stanford Uni...
2020
Unifying single-cell annotations based on the Cell Ontology
10.1101/810234
[ "Wang Sheng", "Pisco Angela Oliveira", "McGeever Aaron", "Brbic Maria", "Zitnik Marinka", "Darmanis Spyros", "Leskovec Jure", "Karkanias Jim", "Altman Russ B." ]
creative-commons
Increased Ca2+ signaling through CaV1.2 induces tendon hypertrophy with increased collagen fibrillogenesis and biomechanical properties Haiyin Li1, 2, Antonion Korcari1, 3, David Ciufo1, 2, Christopher L. Mendias4, Scott A. Rodeo5, Mark R. Buckley1, 3, Alayna E. Loiselle1, 2, Geoffrey S. Pitt6, Chike Cao1, 2 ...
2023
Increased Ca signaling through Ca1.2 induces tendon hypertrophy with increased collagen fibrillogenesis and biomechanical properties
10.1101/2023.01.24.525119
[ "Li Haiyin", "Korcari Antonion", "Ciufo David", "Mendias Christopher L.", "Rodeo Scott A.", "Buckley Mark R.", "Loiselle Alayna E.", "Pitt Geoffrey S.", "Cao Chike" ]
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1 Locus cœruleus noradrenergic neurons phase-lock to prefrontal cortical and hippocampal infra-slow rhythms which synchronize with behavioral events Liyang Xiang1,2, Antoine Harel1, Ralitsa Todorova1, HongYing Gao1, Susan J. Sara1,3 & Sidney I. Wiener1 1Center for Interdisciplinary Research in Biology (CIRB), Co...
2022
Locus cœruleus noradrenergic neurons phase-lock to prefrontal cortical and hippocampal infra-slow rhythms which synchronize with behavioral events
10.1101/2022.05.12.491630
[ "Xiang Liyang", "Harel Antoine", "Todorova Ralitsa", "Gao HongYing", "Sara Susan J.", "Wiener Sidney I." ]
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Brain Capillary Pericytes are Metabolic Sentinels that Control Blood Flow through KATP Channel Activity Ashwini Hariharan1, Colin D. Robertson2, Daniela C.G. Garcia1 & Thomas A. Longden1,# 1Department of Physiology, School of Medicine, University of Maryland, Baltimore, MD, USA 2Department of Pharmacolog...
2022
Brain Capillary Pericytes are Metabolic Sentinels that Control Blood Flow through K Channel Activity
10.1101/2022.03.14.484304
[ "Hariharan Ashwini", "Robertson Colin D.", "Garcia Daniela C.G.", "Longden Thomas A." ]
creative-commons
Priestley, Baber, et al. Page 1 of 23 Pan-cancer whole genome analyses of metastatic solid tumors Peter Priestley1,2,*,#, Jonathan Baber1,2,*, Martijn P. Lolkema3,4, Neeltje Steeghs3,5, Ewart de Bruijn1, Korneel Duyvesteyn1, Susan Haidari1,3, Arne van Hoeck6, Wendy Onstenk1,3,4, Paul Roepman1, Charles Shal...
2019
Pan-cancer whole genome analyses of metastatic solid tumors
10.1101/415133
[ "Priestley Peter", "Baber Jonathan", "Lolkema Martijn P.", "Steeghs Neeltje", "Bruijn Ewart de", "Duyvesteyn Korneel", "Haidari Susan", "Hoeck Arne van", "Onstenk Wendy", "Roepman Paul", "Shale Charles", "Voda Mircea", "Bloemendal Haiko J.", "Tjan-Heijnen Vivianne C.G.", "van Herpen Carl...
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1 Molecular Survey for Selected Viral Pathogens in Wild Leopard Cats 1 (Prionailurus bengalensis) in Taiwan with an Emphasis on the Spatial and 2 Temporal Dynamics of Carnivore Protoparvovirus 1 3 4 Chen-Chih Chen,a,f#† Ai-Mei Chang,b† Wan-Jhen Chen,a Po-Jen Chang,c Yu-Ching 5 Lai,d Hsu-Hsun Leee 6 7 ...
2020
Molecular Survey for Selected Viral Pathogens in Wild Leopard Cats () in Taiwan with an Emphasis on the Spatial and Temporal Dynamics of Carnivore Protoparvovirus 1
10.1101/2020.02.21.960492
[ "Chen Chen-Chih", "Chang Ai-Mei", "Chen Wan-Jhen", "Chang Po-Jen", "Lai Yu-Ching", "Lee Hsu-Hsun" ]
creative-commons
Hyperoxia inhibits proliferation of retinal endothelial cells in Myc dependent manner Charandeep Singh1, Andrew Benos1, Allison Grenell1,2, Sujata Rao1,3, Bela Anand-Apte1,3, Jonathan E. Sears1,4 1 Ophthalmic Research, Cole Eye Institute, Cleveland Clinic, Cleveland, OH 44195, USA. 2 Department of Pharmacology, Ca...
2020
Hyperoxia inhibits proliferation of retinal endothelial cells in Myc dependent manner
10.1101/2020.11.09.375220
[ "Singh Charandeep", "Benos Andrew", "Grenell Allison", "Rao Sujata", "Anand-Apte Bela", "Sears Jonathan E." ]
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Page 1 of 14 List of email addresses and ORCIDs for all authors: 1 Daniele Mercatelli, daniele.mercatelli2@unibo.it, ORCID 0000-0003-3228-0580 2 Luca Triboli, luca.triboli@studio.unibo.it, ORCID 0000-0002-1261-0637 3 Eleonora Fornasari, eleonora.fornasari@ordingbo.it, ORCID 0000-0002-7636-085X 4 Forest Ray, ...
2020
: A Web Application to Annotate and Monitor SARS-CoV-2 Mutations
10.1101/2020.05.31.124966
[ "Mercatelli Daniele", "Triboli Luca", "Fornasari Eleonora", "Ray Forest", "Giorgi Federico M." ]
creative-commons
Dopamine enhances model-free credit assignment through boosting of retrospective model-based inference Lorenz Deserno1,2,3*, Rani Moran1,2*, Jochen Michely1,2, Ying Lee1,2, Peter Dayan1,4,5, Raymond J. Dolan1,2 1 Max Planck UCL Centre for Computational Psychiatry and Ageing Research, London, United King...
2021
Dopamine enhances model-free credit assignment through boosting of retrospective model-based inference
10.1101/2021.01.15.426639
[ "Deserno Lorenz", "Moran Rani", "Michely Jochen", "Lee Ying", "Dayan Peter", "Dolan Raymond J." ]
creative-commons
1 TITLE: Developing an empirical model for spillover and emergence: Orsay virus host range in Caenorhabditis AUTHOR LIST: Clara L. Shaw1 Department of Biology, The Pennsylvania State University, University Park, PA 16802 David A. Kennedy2 Department of Biology, The Pennsylvania State University, University Pa...
2021
Developing an empirical model for spillover and emergence: Orsay virus host range in
10.1101/2021.12.10.472097
[ "Shaw Clara L.", "Kennedy David A." ]
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Blood and site of disease inflammatory profiles differ in HIV-1-infected pericardial 1 tuberculosis patients 2 3 Hygon Mutavhatsindia,i*, Elsa Du Bruyna, Sheena Ruzivea, Patrick Howletta, Alan Sherb, 4 Katrin D. Mayer-Barberc, Daniel L. Barberd, Mpiko Ntsekhea,e,f, Robert J. Wilkinsona,e,g,h and 5 Cather...
2022
Blood and site of disease inflammatory profiles differ in HIV-1-infected pericardial tuberculosis patients
10.1101/2022.10.21.513232
[ "Mutavhatsindi Hygon", "Du Bruyn Elsa", "Ruzive Sheena", "Howlett Patrick", "Sher Alan", "Mayer-Barber Katrin D.", "Barber Daniel L.", "Ntsekhe Mpiko", "Wilkinson Robert J.", "Riou Catherine" ]
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Linguistic Analysis of the bioRxiv Preprint Landscape This manuscript (permalink) was automatically generated from greenelab/annorxiver_manuscript@2034e45 on May 12, 2021. Authors David N. Nicholson 0000-0003-0002-5761 · danich1 · dnicholson329 Department of Systems Pharmacology and Translational Therapeutics, P...
2021
Linguistic Analysis of the bioRxiv Preprint Landscape
10.1101/2021.03.04.433874
[ "Nicholson David N.", "Rubinetti Vincent", "Hu Dongbo", "Thielk Marvin", "Hunter Lawrence E.", "Greene Casey S." ]
creative-commons
1 7 Tesla MRI of the ex vivo human brain at 100 micron resolution 1 2 Brian L. Edlow1,2, Azma Mareyam2, Andreas Horn3, Jonathan R. Polimeni2, M. Dylan 3 Tisdall4, Jean Augustinack2, Jason P. Stockmann2, Bram R. Diamond2, Allison 4 Stevens2, Lee S. Tirrell2, Rebecca D. Folkerth5, Lawrence L. Wald2, Bruce Fis...
2019
7 Tesla MRI of the human brain at 100 micron resolution
10.1101/649822
[ "Edlow Brian L.", "Mareyam Azma", "Horn Andreas", "Polimeni Jonathan R.", "Tisdall M. Dylan", "Augustinack Jean", "Stockmann Jason P.", "Diamond Bram R.", "Stevens Allison", "Tirrell Lee S.", "Folkerth Rebecca D.", "Wald Lawrence L.", "Fischl Bruce", "van der Kouwe Andre" ]
creative-commons
1 Transcription Co-Factor LBH Is Necessary for Maintenance of Stereocilia Bundles and Survival of Cochlear Hair Cells Huizhan Liu1#, Kimberlee P. Giffen1#, Grati M’Hamed2, Seth W. Morrill1, Yi Li1,3 Xuezhong Liu2, Karoline J. Briegel4*, David Z. He1* 1Department of Biomedical Sciences, Creighton University...
2020
Transcription Co-Factor LBH Is Necessary for Maintenance of Stereocilia Bundles and Survival of Cochlear Hair Cells
10.1101/2020.05.13.093377
[ "Liu Huizhan", "Giffen Kimberlee P.", "M’Hamed Grati", "Morrill Seth W.", "Li Yi", "Liu Xuezhong", "Briegel Karoline J.", "He David Z." ]
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Highlights Toolkit for Oscillatory Real-time Tracking and Estimation (TORTE) Mark J Schatza,Ethan B Blackwood,Sumedh S Nagrale,Alik S Widge • TORTE provides a toolkit to investigate closed loop oscillation-informed experiments. • The toolkit is versatile and open-source promoting replicability across scientists. • The ...
2021
Toolkit for Oscillatory Real-time Tracking and Estimation (TORTE)
10.1101/2021.06.21.449019
[ "Schatza Mark J", "Blackwood Ethan B", "Nagrale Sumedh S", "Widge Alik S" ]
creative-commons
Susceptibility rhythm to bacterial endotoxin in myeloid clock-knockout mice Veronika Lang1, Sebastian Ferencik1, Bharath Ananthasubramaniam1,2, Achim Kramer1, Bert Maier1,* 1 Laboratory of Chronobiology, Charit´e Universit¨atsmedizin Berlin, Germany, 2 Institute for Theoretical Biology, Humboldt-Universit¨at zu Berlin,...
2019
Susceptibility rhythm to bacterial endotoxin in myeloid clock-knockout mice
10.1101/766519
[ "Lang Veronika", "Ferencik Sebastian", "Ananthasubramaniam Bharath", "Kramer Achim", "Maier Bert" ]
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1 Morphofunctional evaluation of the adrenal gland in rats submitted to nutritional restriction during pregnancy Bruno dos Santos Telles, Hércules Jonas Rebelato, Marcelo Augusto Marretto Esquisatto*, Rosana Catisti. Programa de Pós-graduação em Ciências Biomédicas, Centro Universitário da Fundação Herm...
2022
Morphofunctional evaluation of the adrenal gland in rats submitted to nutritional restriction during pregnancy
10.1101/2022.10.16.512413
[ "Telles Bruno dos Santos", "Rebelato Hércules Jonas", "Esquisatto Marcelo Augusto Marretto", "Catisti Rosana" ]
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1 Phylo-geo-network and haplogroup analysis of 611 novel Coronavirus (nCov-2019) genomes from India Short running title: Phylogenomic network of nCov-2019 in India Rezwanuzzaman Laskar1, Safdar Ali1* 1Clinical and Applied Genomics (CAG) Laboratory Department of Biological Sciences, Aliah Un...
2020
Phylo-geo-network and haplogroup analysis of 611 novel Coronavirus (nCov-2019) genomes from India
10.1101/2020.09.03.281774
[ "Laskar Rezwanuzzaman", "Ali Safdar" ]
creative-commons
Quantitative profiling of native RNA modifications and their dynamics using nanopore sequencing Oguzhan Begik1,2,3,#, Morghan C Lucas1,4,#, Leszek P Pryszcz1,5, Jose Miguel Ramirez1, Rebeca Medina1, Ivan Milenkovic1,4, Sonia Cruciani1,4, Huanle Liu1, Helaine Graziele Santos Vieira1, Aldema Sas-Chen6,...
2021
Quantitative profiling of native RNA modifications and their dynamics using nanopore sequencing
10.1101/2020.07.06.189969
[ "Begik Oguzhan", "Lucas Morghan C", "Pryszcz Leszek P", "Ramirez Jose Miguel", "Medina Rebeca", "Milenkovic Ivan", "Cruciani Sonia", "Liu Huanle", "Vieira Helaine Graziele Santos", "Sas-Chen Aldema", "Mattick John S", "Schwartz Schraga", "Novoa Eva Maria" ]
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1 CD4-binding site immunogens elicit heterologous anti-HIV-1 neutralizing antibodies in transgenic and wildtype animals Harry B. Gristick1,‡, Harald Hartweger2,‡,, Maximilian Loewe2, Jelle van Schooten1,#, Victor Ramos2, Thiago Y. Oliviera2, Yoshiaki Nishimura3, Nicholas S. Koranda1, Abigail Wall4,5,¶, Kai-Hui ...
2022
CD4-binding site immunogens elicit heterologous anti-HIV-1 neutralizing antibodies in transgenic and wildtype animals
10.1101/2022.09.08.507086
[ "Gristick Harry B.", "Hartweger Harald", "Loewe Maximilian", "van Schooten Jelle", "Ramos Victor", "Oliviera Thiago Y.", "Nishimura Yoshiaki", "Koranda Nicholas S.", "Wall Abigail", "Yao Kai-Hui", "Poston Daniel", "Gazumyan Anna", "Wiatr Marie", "Horning Marcel", "Keeffe Jennifer R.", ...
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1 1 Long title: The positive role of noise for information acquisition in biological 2 signaling pathways 3 Short title: Noise can increase information acquisition in signaling pathways 4 Eugenio Azpeitia1,2,3, Andreas Wagner1,2,4 5 1. Department of Evolutionary Biology and Environmental Studies, University of Zürich...
2019
The positive role of noise for information acquisition in biological signaling pathways
10.1101/762989
[ "Azpeitia Eugenio", "Wagner Andreas" ]
creative-commons
Title: Intravital imaging of real-time endogenous actin dysregulation in proximal and distal tubules at the onset of severe ischemia-reperfusion injury Running Title: Intravital imaging of endogenous actin dysregulation Authors: Peter R. Corridon,1,2,3 Shurooq H. Karam,1 Ali A. Khraibi,1 Anousha A. Khan,1 and ...
2021
Intravital imaging of real-time endogenous actin dysregulation in proximal and distal tubules at the onset of severe ischemia-reperfusion injury
10.1101/2021.03.01.433337
[ "Corridon Peter R.", "Karam Shurooq H.", "Khraibi Ali A.", "Khan Anousha A.", "Alhashmi Mohamed A." ]
creative-commons
1 Influence of prior beliefs on perception in early psychosis: effects of illness stage and hierarchical level of belief J. Haarsma1, F. Knolle1, J.D. Griffin1, H. Taverne1, M. Mada2, I.M. Goodyer1, the NSPN Consortium, P.C Fletcher1,3,4, G.K. Murray1,4 1Department of Psychiatry, University of Cambridge, Uni...
2019
Influence of prior beliefs on perception in early psychosis: effects of illness stage and hierarchical level of belief
10.1101/421891
null
creative-commons
Climate risk to European fisheries and coastal communities 1 2 Mark R. Payne1*, Manja Kudahl1, Georg H. Engelhard2,3 , Myron A. Peck4,** and John K. Pinnegar2,3 3 4 1. National Institute of Aquatic Resources (DTU-Aqua), Technical University of Denmark, 2800 Kgs. 5 Lyngby, Denmark. 6 2. Centre for Environ...
2021
Climate risk to European fisheries and coastal communities
10.1101/2020.08.03.234401
[ "Payne Mark R.", "Kudahl Manja", "Engelhard Georg H.", "Peck Myron A.", "Pinnegar John K." ]
creative-commons
1 Molecular signatures of resource competition: clonal interference 1 drives the emergence of ecotypes 2 Massimo Amicone+, * and Isabel Gordo+, * 3 +Instituto Gulbenkian de Ciência (IGC) 4 *corresponding authors: mamicone@igc.gulbenkian.pt, igordo@igc.gulbenkian.pt 5 6 Short running title: Clonal interac...
2020
Molecular signatures of resource competition: clonal interference drives the emergence of ecotypes
10.1101/2020.11.20.391151
[ "Amicone Massimo", "Gordo Isabel" ]
creative-commons
1 Title: A machine-learning approach to human footprint index estimation with applications to sustainable development Authors: Patrick W. Keys1, Elizabeth A. Barnes2, and Neil H. Carter3 Affiliations: 1School of Global Environmental Sustainability, Colorado State University, Fort Collins, CO 2Department of At...
2021
A machine-learning approach to human footprint index estimation with applications to sustainable development
10.1101/2020.09.06.284414
[ "Keys Patrick W.", "Barnes Elizabeth A.", "Carter Neil H." ]
creative-commons