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import functools as _functools
import numpy as _numpy
import platform as _platform
import cupy as _cupy
from cupy_backends.cuda.api import driver as _driver
from cupy_backends.cuda.api import runtime as _runtime
from cupy_backends.cuda.libs import cusparse as _cusparse
from cupy._core import _dtype
from cupy.cuda import device as _device
from cupy.cuda import stream as _stream
from cupy import _util
import cupyx.scipy.sparse
class MatDescriptor(object):
def __init__(self, descriptor):
self.descriptor = descriptor
@classmethod
def create(cls):
descr = _cusparse.createMatDescr()
return MatDescriptor(descr)
def __reduce__(self):
return self.create, ()
def __del__(self, is_shutting_down=_util.is_shutting_down):
if is_shutting_down():
return
if self.descriptor:
_cusparse.destroyMatDescr(self.descriptor)
self.descriptor = None
def set_mat_type(self, typ):
_cusparse.setMatType(self.descriptor, typ)
def set_mat_index_base(self, base):
_cusparse.setMatIndexBase(self.descriptor, base)
def set_mat_fill_mode(self, fill_mode):
_cusparse.setMatFillMode(self.descriptor, fill_mode)
def set_mat_diag_type(self, diag_type):
_cusparse.setMatDiagType(self.descriptor, diag_type)
def _cast_common_type(*xs):
dtypes = [x.dtype for x in xs if x is not None]
dtype = _functools.reduce(_numpy.promote_types, dtypes)
return [x.astype(dtype) if x is not None and x.dtype != dtype else x
for x in xs]
def _transpose_flag(trans):
if trans:
return _cusparse.CUSPARSE_OPERATION_TRANSPOSE
else:
return _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
def _call_cusparse(name, dtype, *args):
if dtype == 'f':
prefix = 's'
elif dtype == 'd':
prefix = 'd'
elif dtype == 'F':
prefix = 'c'
elif dtype == 'D':
prefix = 'z'
else:
raise TypeError
f = getattr(_cusparse, prefix + name)
return f(*args)
_available_cusparse_version = {
'csrmv': (8000, 11000),
'csrmvEx': (8000, 11000), # TODO(anaruse): failure in cuSparse 11.0
'csrmm': (8000, 11000),
'csrmm2': (8000, 11000),
'csrgeam': (8000, 11000),
'csrgeam2': (9020, None),
'csrgemm': (8000, 11000),
'csrgemm2': (8000, 12000),
'gthr': (8000, 12000),
# Generic APIs are not available on CUDA 10.2 on Windows.
'spmv': ({'Linux': 10200, 'Windows': 11000}, None),
# accuracy bugs in cuSparse 10.3.0
'spmm': ({'Linux': 10301, 'Windows': 11000}, None),
'csr2dense': (8000, 12000),
'csc2dense': (8000, 12000),
'csrsort': (8000, None),
'cscsort': (8000, None),
'coosort': (8000, None),
'coo2csr': (8000, None),
'csr2coo': (8000, None),
'csr2csc': (8000, 11000),
'csc2csr': (8000, 11000), # the entity is csr2csc
'csr2cscEx2': (10200, None),
'csc2csrEx2': (10200, None), # the entity is csr2cscEx2
'dense2csc': (8000, None),
'dense2csr': (8000, None),
'csr2csr_compress': (8000, None),
'csrsm2': (9020, 12000),
'csrilu02': (8000, None),
'denseToSparse': (11300, None),
'sparseToDense': (11300, None),
'spgemm': (11100, None),
'spsm': (11600, None), # CUDA 11.3.1
}
_available_hipsparse_version = {
# For APIs supported by CUDA but not yet by HIP, we still need them here
# so that our test suite can cover both platforms.
'csrmv': (305, None),
'csrmvEx': (_numpy.inf, None),
'csrmm': (305, None),
'csrmm2': (305, None),
'csrgeam': (305, None),
'csrgeam2': (305, None),
'csrgemm': (305, None),
'csrgemm2': (305, None),
'gthr': (305, None),
'spmv': (402, None),
'spmm': (402, None),
'csr2dense': (305, None),
'csc2dense': (305, None),
'csrsort': (305, None),
'cscsort': (305, None),
'coosort': (305, None),
'coo2csr': (305, None),
'csr2coo': (305, None),
'csr2csc': (305, None),
'csc2csr': (305, None), # the entity is csr2csc
'csr2cscEx2': (_numpy.inf, None),
'csc2csrEx2': (_numpy.inf, None), # the entity is csr2cscEx2
'dense2csc': (305, None),
'dense2csr': (305, None),
'csr2csr_compress': (305, None),
'csrsm2': (305, None), # available since 305 but seems buggy
'csrilu02': (305, None),
'denseToSparse': (402, None),
'sparseToDense': (402, None),
'spgemm': (_numpy.inf, None),
'spsm': (50000000, None),
}
def _get_avail_version_from_spec(x):
if isinstance(x, dict):
os_name = _platform.system()
if os_name not in x:
msg = 'No version information specified for the OS: {}'.format(
os_name)
raise ValueError(msg)
return x[os_name]
return x
@_util.memoize()
def check_availability(name):
if not _runtime.is_hip:
available_version = _available_cusparse_version
version = _cusparse.get_build_version()
else:
available_version = _available_hipsparse_version
version = _driver.get_build_version() # = HIP_VERSION
if name not in available_version:
msg = 'No available version information specified for {}'.format(name)
raise ValueError(msg)
version_added, version_removed = available_version[name]
version_added = _get_avail_version_from_spec(version_added)
version_removed = _get_avail_version_from_spec(version_removed)
if version_added is not None and version < version_added:
return False
if version_removed is not None and version >= version_removed:
return False
return True
def getVersion() -> int:
return _cusparse.getVersion(_device.get_cusparse_handle())
def csrmv(a, x, y=None, alpha=1, beta=0, transa=False):
"""Matrix-vector product for a CSR-matrix and a dense vector.
.. math::
y = \\alpha * o_a(A) x + \\beta y,
where :math:`o_a` is a transpose function when ``transa`` is ``True`` and
is an identity function otherwise.
Args:
a (cupyx.cusparse.csr_matrix): Matrix A.
x (cupy.ndarray): Vector x.
y (cupy.ndarray or None): Vector y. It must be F-contiguous.
alpha (float): Coefficient for x.
beta (float): Coefficient for y.
transa (bool): If ``True``, transpose of ``A`` is used.
Returns:
cupy.ndarray: Calculated ``y``.
"""
if not check_availability('csrmv'):
raise RuntimeError('csrmv is not available.')
assert y is None or y.flags.f_contiguous
a_shape = a.shape if not transa else a.shape[::-1]
if a_shape[1] != len(x):
raise ValueError('dimension mismatch')
handle = _device.get_cusparse_handle()
m, n = a_shape
a, x, y = _cast_common_type(a, x, y)
dtype = a.dtype
if y is None:
y = _cupy.zeros(m, dtype)
alpha = _numpy.array(alpha, dtype).ctypes
beta = _numpy.array(beta, dtype).ctypes
_call_cusparse(
'csrmv', dtype,
handle, _transpose_flag(transa),
a.shape[0], a.shape[1], a.nnz, alpha.data, a._descr.descriptor,
a.data.data.ptr, a.indptr.data.ptr, a.indices.data.ptr,
x.data.ptr, beta.data, y.data.ptr)
return y
def csrmvExIsAligned(a, x, y=None):
"""Check if the pointers of arguments for csrmvEx are aligned or not
Args:
a (cupyx.cusparse.csr_matrix): Matrix A.
x (cupy.ndarray): Vector x.
y (cupy.ndarray or None): Vector y.
Check if a, x, y pointers are aligned by 128 bytes as
required by csrmvEx.
Returns:
bool:
``True`` if all pointers are aligned.
``False`` if otherwise.
"""
if a.data.data.ptr % 128 != 0:
return False
if a.indptr.data.ptr % 128 != 0:
return False
if a.indices.data.ptr % 128 != 0:
return False
if x.data.ptr % 128 != 0:
return False
if y is not None and y.data.ptr % 128 != 0:
return False
return True
def csrmvEx(a, x, y=None, alpha=1, beta=0, merge_path=True):
"""Matrix-vector product for a CSR-matrix and a dense vector.
.. math::
y = \\alpha * A x + \\beta y,
Args:
a (cupyx.cusparse.csr_matrix): Matrix A.
x (cupy.ndarray): Vector x.
y (cupy.ndarray or None): Vector y. It must be F-contiguous.
alpha (float): Coefficient for x.
beta (float): Coefficient for y.
merge_path (bool): If ``True``, merge path algorithm is used.
All pointers must be aligned with 128 bytes.
Returns:
cupy.ndarray: Calculated ``y``.
"""
if not check_availability('csrmvEx'):
raise RuntimeError('csrmvEx is not available.')
assert y is None or y.flags.f_contiguous
if a.shape[1] != len(x):
raise ValueError('dimension mismatch')
handle = _device.get_cusparse_handle()
m, n = a.shape
a, x, y = _cast_common_type(a, x, y)
dtype = a.dtype
if y is None:
y = _cupy.zeros(m, dtype)
datatype = _dtype.to_cuda_dtype(dtype)
algmode = _cusparse.CUSPARSE_ALG_MERGE_PATH if \
merge_path else _cusparse.CUSPARSE_ALG_NAIVE
transa_flag = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
alpha = _numpy.array(alpha, dtype).ctypes
beta = _numpy.array(beta, dtype).ctypes
assert csrmvExIsAligned(a, x, y)
bufferSize = _cusparse.csrmvEx_bufferSize(
handle, algmode, transa_flag,
a.shape[0], a.shape[1], a.nnz, alpha.data, datatype,
a._descr.descriptor, a.data.data.ptr, datatype,
a.indptr.data.ptr, a.indices.data.ptr,
x.data.ptr, datatype, beta.data, datatype,
y.data.ptr, datatype, datatype)
buf = _cupy.empty(bufferSize, 'b')
assert buf.data.ptr % 128 == 0
_cusparse.csrmvEx(
handle, algmode, transa_flag,
a.shape[0], a.shape[1], a.nnz, alpha.data, datatype,
a._descr.descriptor, a.data.data.ptr, datatype,
a.indptr.data.ptr, a.indices.data.ptr,
x.data.ptr, datatype, beta.data, datatype,
y.data.ptr, datatype, datatype, buf.data.ptr)
return y
def csrmm(a, b, c=None, alpha=1, beta=0, transa=False):
"""Matrix-matrix product for a CSR-matrix and a dense matrix.
.. math::
C = \\alpha o_a(A) B + \\beta C,
where :math:`o_a` is a transpose function when ``transa`` is ``True`` and
is an identity function otherwise.
Args:
a (cupyx.scipy.sparse.csr): Sparse matrix A.
b (cupy.ndarray): Dense matrix B. It must be F-contiguous.
c (cupy.ndarray or None): Dense matrix C. It must be F-contiguous.
alpha (float): Coefficient for AB.
beta (float): Coefficient for C.
transa (bool): If ``True``, transpose of A is used.
Returns:
cupy.ndarray: Calculated C.
"""
if not check_availability('csrmm'):
raise RuntimeError('csrmm is not available.')
assert a.ndim == b.ndim == 2
assert b.flags.f_contiguous
assert c is None or c.flags.f_contiguous
a_shape = a.shape if not transa else a.shape[::-1]
if a_shape[1] != b.shape[0]:
raise ValueError('dimension mismatch')
handle = _device.get_cusparse_handle()
m, k = a_shape
n = b.shape[1]
a, b, c = _cast_common_type(a, b, c)
if c is None:
c = _cupy.zeros((m, n), a.dtype, 'F')
ldb = k
ldc = m
alpha = _numpy.array(alpha, a.dtype).ctypes
beta = _numpy.array(beta, a.dtype).ctypes
_call_cusparse(
'csrmm', a.dtype,
handle, _transpose_flag(transa),
a.shape[0], n, a.shape[1], a.nnz,
alpha.data, a._descr.descriptor, a.data.data.ptr,
a.indptr.data.ptr, a.indices.data.ptr,
b.data.ptr, ldb, beta.data, c.data.ptr, ldc)
return c
def csrmm2(a, b, c=None, alpha=1.0, beta=0.0, transa=False, transb=False):
"""Matrix-matrix product for a CSR-matrix and a dense matrix.
.. math::
C = \\alpha o_a(A) o_b(B) + \\beta C,
where :math:`o_a` and :math:`o_b` are transpose functions when ``transa``
and ``tranb`` are ``True`` respectively. And they are identity functions
otherwise.
It is forbidden that both ``transa`` and ``transb`` are ``True`` in
cuSPARSE specification.
Args:
a (cupyx.scipy.sparse.csr): Sparse matrix A.
b (cupy.ndarray): Dense matrix B. It must be F-contiguous.
c (cupy.ndarray or None): Dense matrix C. It must be F-contiguous.
alpha (float): Coefficient for AB.
beta (float): Coefficient for C.
transa (bool): If ``True``, transpose of A is used.
transb (bool): If ``True``, transpose of B is used.
Returns:
cupy.ndarray: Calculated C.
"""
if not check_availability('csrmm2'):
raise RuntimeError('csrmm2 is not available.')
assert a.ndim == b.ndim == 2
assert a.has_canonical_format
assert b.flags.f_contiguous
assert c is None or c.flags.f_contiguous
assert not (transa and transb)
a_shape = a.shape if not transa else a.shape[::-1]
b_shape = b.shape if not transb else b.shape[::-1]
if a_shape[1] != b_shape[0]:
raise ValueError('dimension mismatch')
handle = _device.get_cusparse_handle()
m, k = a_shape
n = b_shape[1]
a, b, c = _cast_common_type(a, b, c)
if c is None:
c = _cupy.zeros((m, n), a.dtype, 'F')
ldb = b.shape[0]
ldc = c.shape[0]
op_a = _transpose_flag(transa)
op_b = _transpose_flag(transb)
alpha = _numpy.array(alpha, a.dtype).ctypes
beta = _numpy.array(beta, a.dtype).ctypes
_call_cusparse(
'csrmm2', a.dtype,
handle, op_a, op_b, a.shape[0], n, a.shape[1], a.nnz,
alpha.data, a._descr.descriptor, a.data.data.ptr,
a.indptr.data.ptr, a.indices.data.ptr,
b.data.ptr, ldb, beta.data, c.data.ptr, ldc)
return c
def csrgeam(a, b, alpha=1, beta=1):
"""Matrix-matrix addition.
.. math::
C = \\alpha A + \\beta B
Args:
a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A.
b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B.
alpha (float): Coefficient for A.
beta (float): Coefficient for B.
Returns:
cupyx.scipy.sparse.csr_matrix: Result matrix.
"""
if not check_availability('csrgeam'):
raise RuntimeError('csrgeam is not available.')
if not isinstance(a, cupyx.scipy.sparse.csr_matrix):
raise TypeError('unsupported type (actual: {})'.format(type(a)))
if not isinstance(b, cupyx.scipy.sparse.csr_matrix):
raise TypeError('unsupported type (actual: {})'.format(type(b)))
assert a.has_canonical_format
assert b.has_canonical_format
if a.shape != b.shape:
raise ValueError('inconsistent shapes')
handle = _device.get_cusparse_handle()
m, n = a.shape
a, b = _cast_common_type(a, b)
nnz = _numpy.empty((), 'i')
_cusparse.setPointerMode(
handle, _cusparse.CUSPARSE_POINTER_MODE_HOST)
c_descr = MatDescriptor.create()
c_indptr = _cupy.empty(m + 1, 'i')
_cusparse.xcsrgeamNnz(
handle, m, n,
a._descr.descriptor, a.nnz, a.indptr.data.ptr, a.indices.data.ptr,
b._descr.descriptor, b.nnz, b.indptr.data.ptr, b.indices.data.ptr,
c_descr.descriptor, c_indptr.data.ptr, nnz.ctypes.data)
c_indices = _cupy.empty(int(nnz), 'i')
c_data = _cupy.empty(int(nnz), a.dtype)
alpha = _numpy.array(alpha, a.dtype).ctypes
beta = _numpy.array(beta, a.dtype).ctypes
_call_cusparse(
'csrgeam', a.dtype,
handle, m, n, alpha.data,
a._descr.descriptor, a.nnz, a.data.data.ptr,
a.indptr.data.ptr, a.indices.data.ptr, beta.data,
b._descr.descriptor, b.nnz, b.data.data.ptr,
b.indptr.data.ptr, b.indices.data.ptr,
c_descr.descriptor, c_data.data.ptr, c_indptr.data.ptr,
c_indices.data.ptr)
c = cupyx.scipy.sparse.csr_matrix(
(c_data, c_indices, c_indptr), shape=a.shape)
c._has_canonical_format = True
return c
def csrgeam2(a, b, alpha=1, beta=1):
"""Matrix-matrix addition.
.. math::
C = \\alpha A + \\beta B
Args:
a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A.
b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B.
alpha (float): Coefficient for A.
beta (float): Coefficient for B.
Returns:
cupyx.scipy.sparse.csr_matrix: Result matrix.
"""
if not check_availability('csrgeam2'):
raise RuntimeError('csrgeam2 is not available.')
if not isinstance(a, cupyx.scipy.sparse.csr_matrix):
raise TypeError('unsupported type (actual: {})'.format(type(a)))
if not isinstance(b, cupyx.scipy.sparse.csr_matrix):
raise TypeError('unsupported type (actual: {})'.format(type(b)))
assert a.has_canonical_format
assert b.has_canonical_format
if a.shape != b.shape:
raise ValueError('inconsistent shapes')
handle = _device.get_cusparse_handle()
m, n = a.shape
a, b = _cast_common_type(a, b)
nnz = _numpy.empty((), 'i')
_cusparse.setPointerMode(
handle, _cusparse.CUSPARSE_POINTER_MODE_HOST)
alpha = _numpy.array(alpha, a.dtype).ctypes
beta = _numpy.array(beta, a.dtype).ctypes
c_descr = MatDescriptor.create()
c_indptr = _cupy.empty(m + 1, 'i')
null_ptr = 0
buff_size = _call_cusparse(
'csrgeam2_bufferSizeExt', a.dtype,
handle, m, n, alpha.data, a._descr.descriptor, a.nnz, a.data.data.ptr,
a.indptr.data.ptr, a.indices.data.ptr, beta.data, b._descr.descriptor,
b.nnz, b.data.data.ptr, b.indptr.data.ptr, b.indices.data.ptr,
c_descr.descriptor, null_ptr, c_indptr.data.ptr, null_ptr)
buff = _cupy.empty(buff_size, _numpy.int8)
_cusparse.xcsrgeam2Nnz(
handle, m, n, a._descr.descriptor, a.nnz, a.indptr.data.ptr,
a.indices.data.ptr, b._descr.descriptor, b.nnz, b.indptr.data.ptr,
b.indices.data.ptr, c_descr.descriptor, c_indptr.data.ptr,
nnz.ctypes.data, buff.data.ptr)
c_indices = _cupy.empty(int(nnz), 'i')
c_data = _cupy.empty(int(nnz), a.dtype)
_call_cusparse(
'csrgeam2', a.dtype,
handle, m, n, alpha.data, a._descr.descriptor, a.nnz, a.data.data.ptr,
a.indptr.data.ptr, a.indices.data.ptr, beta.data, b._descr.descriptor,
b.nnz, b.data.data.ptr, b.indptr.data.ptr, b.indices.data.ptr,
c_descr.descriptor, c_data.data.ptr, c_indptr.data.ptr,
c_indices.data.ptr, buff.data.ptr)
c = cupyx.scipy.sparse.csr_matrix(
(c_data, c_indices, c_indptr), shape=a.shape)
c._has_canonical_format = True
return c
def csrgemm(a, b, transa=False, transb=False):
"""Matrix-matrix product for CSR-matrix.
math::
C = op(A) op(B),
Args:
a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A.
b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B.
transa (bool): If ``True``, transpose of A is used.
transb (bool): If ``True``, transpose of B is used.
Returns:
cupyx.scipy.sparse.csr_matrix: Calculated C.
"""
if not check_availability('csrgemm'):
raise RuntimeError('csrgemm is not available.')
assert a.ndim == b.ndim == 2
assert a.has_canonical_format
assert b.has_canonical_format
a_shape = a.shape if not transa else a.shape[::-1]
b_shape = b.shape if not transb else b.shape[::-1]
if a_shape[1] != b_shape[0]:
raise ValueError('dimension mismatch')
handle = _device.get_cusparse_handle()
m, k = a_shape
n = b_shape[1]
a, b = _cast_common_type(a, b)
if a.nnz == 0 or b.nnz == 0:
return cupyx.scipy.sparse.csr_matrix((m, n), dtype=a.dtype)
op_a = _transpose_flag(transa)
op_b = _transpose_flag(transb)
nnz = _numpy.empty((), 'i')
_cusparse.setPointerMode(
handle, _cusparse.CUSPARSE_POINTER_MODE_HOST)
c_descr = MatDescriptor.create()
c_indptr = _cupy.empty(m + 1, 'i')
_cusparse.xcsrgemmNnz(
handle, op_a, op_b, m, n, k, a._descr.descriptor, a.nnz,
a.indptr.data.ptr, a.indices.data.ptr, b._descr.descriptor, b.nnz,
b.indptr.data.ptr, b.indices.data.ptr, c_descr.descriptor,
c_indptr.data.ptr, nnz.ctypes.data)
c_indices = _cupy.empty(int(nnz), 'i')
c_data = _cupy.empty(int(nnz), a.dtype)
_call_cusparse(
'csrgemm', a.dtype,
handle, op_a, op_b, m, n, k, a._descr.descriptor, a.nnz,
a.data.data.ptr, a.indptr.data.ptr, a.indices.data.ptr,
b._descr.descriptor, b.nnz, b.data.data.ptr, b.indptr.data.ptr,
b.indices.data.ptr,
c_descr.descriptor, c_data.data.ptr, c_indptr.data.ptr,
c_indices.data.ptr)
c = cupyx.scipy.sparse.csr_matrix(
(c_data, c_indices, c_indptr), shape=(m, n))
c._has_canonical_format = True
return c
def csrgemm2(a, b, d=None, alpha=1, beta=1):
"""Matrix-matrix product for CSR-matrix.
math::
C = alpha * A * B + beta * D
Args:
a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A.
b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B.
d (cupyx.scipy.sparse.csr_matrix or None): Sparse matrix D.
alpha (scalar): Coefficient
beta (scalar): Coefficient
Returns:
cupyx.scipy.sparse.csr_matrix
"""
if not check_availability('csrgemm2'):
raise RuntimeError('csrgemm2 is not available.')
assert a.ndim == b.ndim == 2
if not isinstance(a, cupyx.scipy.sparse.csr_matrix):
raise TypeError('unsupported type (actual: {})'.format(type(a)))
if not isinstance(b, cupyx.scipy.sparse.csr_matrix):
raise TypeError('unsupported type (actual: {})'.format(type(b)))
assert a.has_canonical_format
assert b.has_canonical_format
if a.shape[1] != b.shape[0]:
raise ValueError('mismatched shape')
if d is not None:
assert d.ndim == 2
if not isinstance(d, cupyx.scipy.sparse.csr_matrix):
raise TypeError('unsupported type (actual: {})'.format(type(d)))
assert d.has_canonical_format
if a.shape[0] != d.shape[0] or b.shape[1] != d.shape[1]:
raise ValueError('mismatched shape')
if _runtime.is_hip and _driver.get_build_version() < 402:
raise RuntimeError('d != None is supported since ROCm 4.2.0')
handle = _device.get_cusparse_handle()
m, k = a.shape
_, n = b.shape
if d is None:
a, b = _cast_common_type(a, b)
else:
a, b, d = _cast_common_type(a, b, d)
info = _cusparse.createCsrgemm2Info()
alpha = _numpy.array(alpha, a.dtype).ctypes
null_ptr = 0
if d is None:
beta_data = null_ptr
d_descr = MatDescriptor.create()
d_nnz = 0
d_data = null_ptr
d_indptr = null_ptr
d_indices = null_ptr
else:
beta = _numpy.array(beta, a.dtype).ctypes
beta_data = beta.data
d_descr = d._descr
d_nnz = d.nnz
d_data = d.data.data.ptr
d_indptr = d.indptr.data.ptr
d_indices = d.indices.data.ptr
buff_size = _call_cusparse(
'csrgemm2_bufferSizeExt', a.dtype,
handle, m, n, k, alpha.data, a._descr.descriptor, a.nnz,
a.indptr.data.ptr, a.indices.data.ptr, b._descr.descriptor, b.nnz,
b.indptr.data.ptr, b.indices.data.ptr, beta_data, d_descr.descriptor,
d_nnz, d_indptr, d_indices, info)
buff = _cupy.empty(buff_size, _numpy.int8)
c_nnz = _numpy.empty((), 'i')
_cusparse.setPointerMode(handle, _cusparse.CUSPARSE_POINTER_MODE_HOST)
c_descr = MatDescriptor.create()
c_indptr = _cupy.empty(m + 1, 'i')
_cusparse.xcsrgemm2Nnz(
handle, m, n, k, a._descr.descriptor, a.nnz, a.indptr.data.ptr,
a.indices.data.ptr, b._descr.descriptor, b.nnz, b.indptr.data.ptr,
b.indices.data.ptr, d_descr.descriptor, d_nnz, d_indptr, d_indices,
c_descr.descriptor, c_indptr.data.ptr, c_nnz.ctypes.data, info,
buff.data.ptr)
c_indices = _cupy.empty(int(c_nnz), 'i')
c_data = _cupy.empty(int(c_nnz), a.dtype)
_call_cusparse(
'csrgemm2', a.dtype,
handle, m, n, k, alpha.data, a._descr.descriptor, a.nnz,
a.data.data.ptr, a.indptr.data.ptr, a.indices.data.ptr,
b._descr.descriptor, b.nnz, b.data.data.ptr, b.indptr.data.ptr,
b.indices.data.ptr, beta_data, d_descr.descriptor, d_nnz, d_data,
d_indptr, d_indices, c_descr.descriptor, c_data.data.ptr,
c_indptr.data.ptr, c_indices.data.ptr, info, buff.data.ptr)
c = cupyx.scipy.sparse.csr_matrix(
(c_data, c_indices, c_indptr), shape=(m, n))
c._has_canonical_format = True
_cusparse.destroyCsrgemm2Info(info)
return c
def csr2dense(x, out=None):
"""Converts CSR-matrix to a dense matrix.
Args:
x (cupyx.scipy.sparse.csr_matrix): A sparse matrix to convert.
out (cupy.ndarray or None): A dense metrix to store the result.
It must be F-contiguous.
Returns:
cupy.ndarray: Converted result.
"""
if not check_availability('csr2dense'):
raise RuntimeError('csr2dense is not available.')
dtype = x.dtype
assert dtype.char in 'fdFD'
if out is None:
out = _cupy.empty(x.shape, dtype=dtype, order='F')
else:
assert out.flags.f_contiguous
handle = _device.get_cusparse_handle()
_call_cusparse(
'csr2dense', x.dtype,
handle, x.shape[0], x.shape[1], x._descr.descriptor,
x.data.data.ptr, x.indptr.data.ptr, x.indices.data.ptr,
out.data.ptr, x.shape[0])
return out
def csc2dense(x, out=None):
"""Converts CSC-matrix to a dense matrix.
Args:
x (cupyx.scipy.sparse.csc_matrix): A sparse matrix to convert.
out (cupy.ndarray or None): A dense metrix to store the result.
It must be F-contiguous.
Returns:
cupy.ndarray: Converted result.
"""
if not check_availability('csc2dense'):
raise RuntimeError('csc2dense is not available.')
dtype = x.dtype
assert dtype.char in 'fdFD'
if out is None:
out = _cupy.empty(x.shape, dtype=dtype, order='F')
else:
assert out.flags.f_contiguous
handle = _device.get_cusparse_handle()
_call_cusparse(
'csc2dense', x.dtype,
handle, x.shape[0], x.shape[1], x._descr.descriptor,
x.data.data.ptr, x.indices.data.ptr, x.indptr.data.ptr,
out.data.ptr, x.shape[0])
return out
def csrsort(x):
"""Sorts indices of CSR-matrix in place.
Args:
x (cupyx.scipy.sparse.csr_matrix): A sparse matrix to sort.
"""
if not check_availability('csrsort'):
raise RuntimeError('csrsort is not available.')
nnz = x.nnz
if nnz == 0:
return
handle = _device.get_cusparse_handle()
m, n = x.shape
buffer_size = _cusparse.xcsrsort_bufferSizeExt(
handle, m, n, nnz, x.indptr.data.ptr,
x.indices.data.ptr)
buf = _cupy.empty(buffer_size, 'b')
P = _cupy.empty(nnz, 'i')
data_orig = x.data.copy()
_cusparse.createIdentityPermutation(handle, nnz, P.data.ptr)
_cusparse.xcsrsort(
handle, m, n, nnz, x._descr.descriptor, x.indptr.data.ptr,
x.indices.data.ptr, P.data.ptr, buf.data.ptr)
if check_availability('gthr'):
_call_cusparse(
'gthr', x.dtype,
handle, nnz, data_orig.data.ptr, x.data.data.ptr,
P.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO)
else:
desc_x = SpVecDescriptor.create(P, x.data)
desc_y = DnVecDescriptor.create(data_orig)
_cusparse.gather(handle, desc_y.desc, desc_x.desc)
def cscsort(x):
"""Sorts indices of CSC-matrix in place.
Args:
x (cupyx.scipy.sparse.csc_matrix): A sparse matrix to sort.
"""
if not check_availability('cscsort'):
raise RuntimeError('cscsort is not available.')
nnz = x.nnz
if nnz == 0:
return
handle = _device.get_cusparse_handle()
m, n = x.shape
buffer_size = _cusparse.xcscsort_bufferSizeExt(
handle, m, n, nnz, x.indptr.data.ptr,
x.indices.data.ptr)
buf = _cupy.empty(buffer_size, 'b')
P = _cupy.empty(nnz, 'i')
data_orig = x.data.copy()
_cusparse.createIdentityPermutation(handle, nnz, P.data.ptr)
_cusparse.xcscsort(
handle, m, n, nnz, x._descr.descriptor, x.indptr.data.ptr,
x.indices.data.ptr, P.data.ptr, buf.data.ptr)
if check_availability('gthr'):
_call_cusparse(
'gthr', x.dtype,
handle, nnz, data_orig.data.ptr, x.data.data.ptr,
P.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO)
else:
desc_x = SpVecDescriptor.create(P, x.data)
desc_y = DnVecDescriptor.create(data_orig)
_cusparse.gather(handle, desc_y.desc, desc_x.desc)
def coosort(x, sort_by='r'):
"""Sorts indices of COO-matrix in place.
Args:
x (cupyx.scipy.sparse.coo_matrix): A sparse matrix to sort.
sort_by (str): Sort the indices by row ('r', default) or column ('c').
"""
if not check_availability('coosort'):
raise RuntimeError('coosort is not available.')
nnz = x.nnz
if nnz == 0:
return
handle = _device.get_cusparse_handle()
m, n = x.shape
buffer_size = _cusparse.xcoosort_bufferSizeExt(
handle, m, n, nnz, x.row.data.ptr, x.col.data.ptr)
buf = _cupy.empty(buffer_size, 'b')
P = _cupy.empty(nnz, 'i')
data_orig = x.data.copy()
_cusparse.createIdentityPermutation(handle, nnz, P.data.ptr)
if sort_by == 'r':
_cusparse.xcoosortByRow(
handle, m, n, nnz, x.row.data.ptr, x.col.data.ptr,
P.data.ptr, buf.data.ptr)
elif sort_by == 'c':
_cusparse.xcoosortByColumn(
handle, m, n, nnz, x.row.data.ptr, x.col.data.ptr,
P.data.ptr, buf.data.ptr)
else:
raise ValueError("sort_by must be either 'r' or 'c'")
if x.dtype.char != '?':
if check_availability('gthr'):
_call_cusparse(
'gthr', x.dtype,
handle, nnz, data_orig.data.ptr, x.data.data.ptr,
P.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO)
else:
desc_x = SpVecDescriptor.create(P, x.data)
desc_y = DnVecDescriptor.create(data_orig)
_cusparse.gather(handle, desc_y.desc, desc_x.desc)
if sort_by == 'c': # coo is sorted by row first
x._has_canonical_format = False
def coo2csr(x):
handle = _device.get_cusparse_handle()
m = x.shape[0]
nnz = x.nnz
if nnz == 0:
indptr = _cupy.zeros(m + 1, 'i')
else:
indptr = _cupy.empty(m + 1, 'i')
_cusparse.xcoo2csr(
handle, x.row.data.ptr, nnz, m,
indptr.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO)
return cupyx.scipy.sparse.csr_matrix(
(x.data, x.col, indptr), shape=x.shape)
def coo2csc(x):
handle = _device.get_cusparse_handle()
n = x.shape[1]
nnz = x.nnz
if nnz == 0:
indptr = _cupy.zeros(n + 1, 'i')
else:
indptr = _cupy.empty(n + 1, 'i')
_cusparse.xcoo2csr(
handle, x.col.data.ptr, nnz, n,
indptr.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO)
return cupyx.scipy.sparse.csc_matrix(
(x.data, x.row, indptr), shape=x.shape)
def csr2coo(x, data, indices):
"""Converts a CSR-matrix to COO format.
Args:
x (cupyx.scipy.sparse.csr_matrix): A matrix to be converted.
data (cupy.ndarray): A data array for converted data.
indices (cupy.ndarray): An index array for converted data.
Returns:
cupyx.scipy.sparse.coo_matrix: A converted matrix.
"""
if not check_availability('csr2coo'):
raise RuntimeError('csr2coo is not available.')
handle = _device.get_cusparse_handle()
m = x.shape[0]
nnz = x.nnz
row = _cupy.empty(nnz, 'i')
_cusparse.xcsr2coo(
handle, x.indptr.data.ptr, nnz, m, row.data.ptr,
_cusparse.CUSPARSE_INDEX_BASE_ZERO)
# data and indices did not need to be copied already
return cupyx.scipy.sparse.coo_matrix(
(data, (row, indices)), shape=x.shape)
def csr2csc(x):
if not check_availability('csr2csc'):
raise RuntimeError('csr2csc is not available.')
handle = _device.get_cusparse_handle()
m, n = x.shape
nnz = x.nnz
data = _cupy.empty(nnz, x.dtype)
indices = _cupy.empty(nnz, 'i')
if nnz == 0:
indptr = _cupy.zeros(n + 1, 'i')
else:
indptr = _cupy.empty(n + 1, 'i')
_call_cusparse(
'csr2csc', x.dtype,
handle, m, n, nnz, x.data.data.ptr,
x.indptr.data.ptr, x.indices.data.ptr,
data.data.ptr, indices.data.ptr, indptr.data.ptr,
_cusparse.CUSPARSE_ACTION_NUMERIC,
_cusparse.CUSPARSE_INDEX_BASE_ZERO)
return cupyx.scipy.sparse.csc_matrix(
(data, indices, indptr), shape=x.shape)
def csr2cscEx2(x):
if not check_availability('csr2cscEx2'):
raise RuntimeError('csr2cscEx2 is not available.')
handle = _device.get_cusparse_handle()
m, n = x.shape
nnz = x.nnz
data = _cupy.empty(nnz, x.dtype)
indices = _cupy.empty(nnz, 'i')
if nnz == 0:
indptr = _cupy.zeros(n + 1, 'i')
else:
indptr = _cupy.empty(n + 1, 'i')
x_dtype = _dtype.to_cuda_dtype(x.dtype)
action = _cusparse.CUSPARSE_ACTION_NUMERIC
ibase = _cusparse.CUSPARSE_INDEX_BASE_ZERO
algo = _cusparse.CUSPARSE_CSR2CSC_ALG1
buffer_size = _cusparse.csr2cscEx2_bufferSize(
handle, m, n, nnz, x.data.data.ptr, x.indptr.data.ptr,
x.indices.data.ptr, data.data.ptr, indptr.data.ptr,
indices.data.ptr, x_dtype, action, ibase, algo)
buffer = _cupy.empty(buffer_size, _numpy.int8)
_cusparse.csr2cscEx2(
handle, m, n, nnz, x.data.data.ptr, x.indptr.data.ptr,
x.indices.data.ptr, data.data.ptr, indptr.data.ptr,
indices.data.ptr, x_dtype, action, ibase, algo, buffer.data.ptr)
return cupyx.scipy.sparse.csc_matrix(
(data, indices, indptr), shape=x.shape)
def csc2coo(x, data, indices):
"""Converts a CSC-matrix to COO format.
Args:
x (cupyx.scipy.sparse.csc_matrix): A matrix to be converted.
data (cupy.ndarray): A data array for converted data.
indices (cupy.ndarray): An index array for converted data.
Returns:
cupyx.scipy.sparse.coo_matrix: A converted matrix.
"""
handle = _device.get_cusparse_handle()
n = x.shape[1]
nnz = x.nnz
col = _cupy.empty(nnz, 'i')
_cusparse.xcsr2coo(
handle, x.indptr.data.ptr, nnz, n, col.data.ptr,
_cusparse.CUSPARSE_INDEX_BASE_ZERO)
# data and indices did not need to be copied already
return cupyx.scipy.sparse.coo_matrix(
(data, (indices, col)), shape=x.shape)
def csc2csr(x):
if not check_availability('csc2csr'):
raise RuntimeError('csr2csc is not available.')
handle = _device.get_cusparse_handle()
m, n = x.shape
nnz = x.nnz
data = _cupy.empty(nnz, x.dtype)
indices = _cupy.empty(nnz, 'i')
if nnz == 0:
indptr = _cupy.zeros(m + 1, 'i')
else:
indptr = _cupy.empty(m + 1, 'i')
_call_cusparse(
'csr2csc', x.dtype,
handle, n, m, nnz, x.data.data.ptr,
x.indptr.data.ptr, x.indices.data.ptr,
data.data.ptr, indices.data.ptr, indptr.data.ptr,
_cusparse.CUSPARSE_ACTION_NUMERIC,
_cusparse.CUSPARSE_INDEX_BASE_ZERO)
return cupyx.scipy.sparse.csr_matrix(
(data, indices, indptr), shape=x.shape)
def csc2csrEx2(x):
if not check_availability('csc2csrEx2'):
raise RuntimeError('csc2csrEx2 is not available.')
handle = _device.get_cusparse_handle()
m, n = x.shape
nnz = x.nnz
data = _cupy.empty(nnz, x.dtype)
indices = _cupy.empty(nnz, 'i')
if nnz == 0:
indptr = _cupy.zeros(m + 1, 'i')
else:
indptr = _cupy.empty(m + 1, 'i')
x_dtype = _dtype.to_cuda_dtype(x.dtype)
action = _cusparse.CUSPARSE_ACTION_NUMERIC
ibase = _cusparse.CUSPARSE_INDEX_BASE_ZERO
algo = _cusparse.CUSPARSE_CSR2CSC_ALG1
buffer_size = _cusparse.csr2cscEx2_bufferSize(
handle, n, m, nnz, x.data.data.ptr, x.indptr.data.ptr,
x.indices.data.ptr, data.data.ptr, indptr.data.ptr,
indices.data.ptr, x_dtype, action, ibase, algo)
buffer = _cupy.empty(buffer_size, _numpy.int8)
_cusparse.csr2cscEx2(
handle, n, m, nnz, x.data.data.ptr, x.indptr.data.ptr,
x.indices.data.ptr, data.data.ptr, indptr.data.ptr,
indices.data.ptr, x_dtype, action, ibase, algo, buffer.data.ptr)
return cupyx.scipy.sparse.csr_matrix(
(data, indices, indptr), shape=x.shape)
def dense2csc(x):
"""Converts a dense matrix in CSC format.
Args:
x (cupy.ndarray): A matrix to be converted.
Returns:
cupyx.scipy.sparse.csc_matrix: A converted matrix.
"""
if not check_availability('dense2csc'):
raise RuntimeError('dense2csc is not available.')
assert x.ndim == 2
x = _cupy.asfortranarray(x)
nnz = _numpy.empty((), dtype='i')
handle = _device.get_cusparse_handle()
m, n = x.shape
descr = MatDescriptor.create()
nnz_per_col = _cupy.empty(m, 'i')
_call_cusparse(
'nnz', x.dtype,
handle, _cusparse.CUSPARSE_DIRECTION_COLUMN, m, n, descr.descriptor,
x.data.ptr, m, nnz_per_col.data.ptr, nnz.ctypes.data)
nnz = int(nnz)
data = _cupy.empty(nnz, x.dtype)
indptr = _cupy.empty(n + 1, 'i')
indices = _cupy.empty(nnz, 'i')
_call_cusparse(
'dense2csc', x.dtype,
handle, m, n, descr.descriptor,
x.data.ptr, m, nnz_per_col.data.ptr,
data.data.ptr, indices.data.ptr, indptr.data.ptr)
# Note that a descriptor is recreated
csc = cupyx.scipy.sparse.csc_matrix((data, indices, indptr), shape=x.shape)
csc._has_canonical_format = True
return csc
def dense2csr(x):
"""Converts a dense matrix in CSR format.
Args:
x (cupy.ndarray): A matrix to be converted.
Returns:
cupyx.scipy.sparse.csr_matrix: A converted matrix.
"""
if not check_availability('dense2csr'):
raise RuntimeError('dense2csr is not available.')
assert x.ndim == 2
x = _cupy.asfortranarray(x)
nnz = _numpy.empty((), dtype='i')
handle = _device.get_cusparse_handle()
m, n = x.shape
descr = MatDescriptor.create()
nnz_per_row = _cupy.empty(m, 'i')
_call_cusparse(
'nnz', x.dtype,
handle, _cusparse.CUSPARSE_DIRECTION_ROW, m, n, descr.descriptor,
x.data.ptr, m, nnz_per_row.data.ptr, nnz.ctypes.data)
nnz = int(nnz)
if _runtime.is_hip:
if nnz == 0:
raise ValueError('hipSPARSE currently cannot handle '
'sparse matrices with null ptrs')
data = _cupy.empty(nnz, x.dtype)
indptr = _cupy.empty(m + 1, 'i')
indices = _cupy.empty(nnz, 'i')
_call_cusparse(
'dense2csr', x.dtype,
handle, m, n, descr.descriptor,
x.data.ptr, m, nnz_per_row.data.ptr,
data.data.ptr, indptr.data.ptr, indices.data.ptr)
# Note that a descriptor is recreated
csr = cupyx.scipy.sparse.csr_matrix((data, indices, indptr), shape=x.shape)
csr._has_canonical_format = True
return csr
def csr2csr_compress(x, tol):
if not check_availability('csr2csr_compress'):
raise RuntimeError('csr2csr_compress is not available.')
assert x.dtype.char in 'fdFD'
handle = _device.get_cusparse_handle()
m, n = x.shape
nnz_per_row = _cupy.empty(m, 'i')
nnz = _call_cusparse(
'nnz_compress', x.dtype,
handle, m, x._descr.descriptor,
x.data.data.ptr, x.indptr.data.ptr, nnz_per_row.data.ptr, tol)
data = _cupy.zeros(nnz, x.dtype)
indptr = _cupy.empty(m + 1, 'i')
indices = _cupy.zeros(nnz, 'i')
_call_cusparse(
'csr2csr_compress', x.dtype,
handle, m, n, x._descr.descriptor,
x.data.data.ptr, x.indices.data.ptr, x.indptr.data.ptr,
x.nnz, nnz_per_row.data.ptr, data.data.ptr, indices.data.ptr,
indptr.data.ptr, tol)
return cupyx.scipy.sparse.csr_matrix(
(data, indices, indptr), shape=x.shape)
def _dtype_to_IndexType(dtype):
if dtype == 'uint16':
return _cusparse.CUSPARSE_INDEX_16U
elif dtype == 'int32':
return _cusparse.CUSPARSE_INDEX_32I
elif dtype == 'int64':
return _cusparse.CUSPARSE_INDEX_64I
else:
raise TypeError
class BaseDescriptor(object):
def __init__(self, descriptor, get=None, destroyer=None):
self.desc = descriptor
self.get = get
self.destroy = destroyer
def __del__(self, is_shutting_down=_util.is_shutting_down):
if is_shutting_down():
return
if self.destroy is None:
self.desc = None
elif self.desc is not None:
self.destroy(self.desc)
self.desc = None
def __getattr__(self, name):
if self.get is not None:
return getattr(self.get(self.desc), name)
raise AttributeError
class SpMatDescriptor(BaseDescriptor):
@classmethod
def create(cls, a):
assert cupyx.scipy.sparse.issparse(a)
rows, cols = a.shape
idx_base = _cusparse.CUSPARSE_INDEX_BASE_ZERO
cuda_dtype = _dtype.to_cuda_dtype(a.dtype)
if a.format == 'csr':
desc = _cusparse.createCsr(
rows, cols, a.nnz, a.indptr.data.ptr, a.indices.data.ptr,
a.data.data.ptr, _dtype_to_IndexType(a.indptr.dtype),
_dtype_to_IndexType(a.indices.dtype), idx_base, cuda_dtype)
get = _cusparse.csrGet
elif a.format == 'coo':
desc = _cusparse.createCoo(
rows, cols, a.nnz, a.row.data.ptr, a.col.data.ptr,
a.data.data.ptr, _dtype_to_IndexType(a.row.dtype),
idx_base, cuda_dtype)
get = _cusparse.cooGet
elif a.format == 'csc':
desc = _cusparse.createCsc(
rows, cols, a.nnz, a.indptr.data.ptr, a.indices.data.ptr,
a.data.data.ptr, _dtype_to_IndexType(a.indptr.dtype),
_dtype_to_IndexType(a.indices.dtype), idx_base, cuda_dtype)
get = None
else:
raise ValueError('csr, csc and coo format are supported '
'(actual: {}).'.format(a.format))
destroy = _cusparse.destroySpMat
return SpMatDescriptor(desc, get, destroy)
def set_attribute(self, attribute, data):
_cusparse.spMatSetAttribute(self.desc, attribute, data)
class SpVecDescriptor(BaseDescriptor):
@classmethod
def create(cls, idx, x):
nnz = x.size
cuda_dtype = _dtype.to_cuda_dtype(x.dtype)
desc = _cusparse.createSpVec(nnz, nnz, idx.data.ptr, x.data.ptr,
_dtype_to_IndexType(idx.dtype),
_cusparse.CUSPARSE_INDEX_BASE_ZERO,
cuda_dtype)
get = _cusparse.spVecGet
destroy = _cusparse.destroySpVec
return SpVecDescriptor(desc, get, destroy)
class DnVecDescriptor(BaseDescriptor):
@classmethod
def create(cls, x):
cuda_dtype = _dtype.to_cuda_dtype(x.dtype)
desc = _cusparse.createDnVec(x.size, x.data.ptr, cuda_dtype)
get = _cusparse.dnVecGet
destroy = _cusparse.destroyDnVec
return DnVecDescriptor(desc, get, destroy)
class DnMatDescriptor(BaseDescriptor):
@classmethod
def create(cls, a):
assert a.ndim == 2
assert a.flags.f_contiguous
rows, cols = a.shape
ld = rows
cuda_dtype = _dtype.to_cuda_dtype(a.dtype)
desc = _cusparse.createDnMat(rows, cols, ld, a.data.ptr, cuda_dtype,
_cusparse.CUSPARSE_ORDER_COL)
get = _cusparse.dnMatGet
destroy = _cusparse.destroyDnMat
return DnMatDescriptor(desc, get, destroy)
def spmv(a, x, y=None, alpha=1, beta=0, transa=False):
"""Multiplication of sparse matrix and dense vector.
.. math::
y = \\alpha * op(A) x + \\beta * y
Args:
a (cupyx.scipy.sparse.csr_matrix, csc_matrix or coo_matrix):
Sparse matrix A
x (cupy.ndarray): Dense vector x
y (cupy.ndarray or None): Dense vector y
alpha (scalar): Coefficient
beta (scalar): Coefficient
transa (bool): If ``True``, op(A) = transpose of A.
Returns:
cupy.ndarray
"""
if not check_availability('spmv'):
raise RuntimeError('spmv is not available.')
if isinstance(a, cupyx.scipy.sparse.csc_matrix):
aT = a.T
if not isinstance(aT, cupyx.scipy.sparse.csr_matrix):
msg = 'aT must be csr_matrix (actual: {})'.format(type(aT))
raise TypeError(msg)
a = aT
transa = not transa
if not isinstance(a, (cupyx.scipy.sparse.csr_matrix,
cupyx.scipy.sparse.coo_matrix)):
raise TypeError('unsupported type (actual: {})'.format(type(a)))
a_shape = a.shape if not transa else a.shape[::-1]
if a_shape[1] != len(x):
raise ValueError('dimension mismatch')
assert a.has_canonical_format
m, n = a_shape
a, x, y = _cast_common_type(a, x, y)
if y is None:
y = _cupy.zeros(m, a.dtype)
elif len(y) != m:
raise ValueError('dimension mismatch')
if a.nnz == 0:
y.fill(0)
return y
desc_a = SpMatDescriptor.create(a)
desc_x = DnVecDescriptor.create(x)
desc_y = DnVecDescriptor.create(y)
handle = _device.get_cusparse_handle()
op_a = _transpose_flag(transa)
alpha = _numpy.array(alpha, a.dtype).ctypes
beta = _numpy.array(beta, a.dtype).ctypes
cuda_dtype = _dtype.to_cuda_dtype(a.dtype)
alg = _cusparse.CUSPARSE_MV_ALG_DEFAULT
buff_size = _cusparse.spMV_bufferSize(handle, op_a, alpha.data,
desc_a.desc, desc_x.desc, beta.data,
desc_y.desc, cuda_dtype, alg)
buff = _cupy.empty(buff_size, _cupy.int8)
_cusparse.spMV(handle, op_a, alpha.data, desc_a.desc, desc_x.desc,
beta.data, desc_y.desc, cuda_dtype, alg, buff.data.ptr)
return y
def spmm(a, b, c=None, alpha=1, beta=0, transa=False, transb=False):
"""Multiplication of sparse matrix and dense matrix.
.. math::
C = \\alpha * op(A) op(B) + \\beta * C
Args:
a (cupyx.scipy.sparse.csr_matrix, csc_matrix or coo_matrix):
Sparse matrix A
b (cupy.ndarray): Dense matrix B
c (cupy.ndarray or None): Dense matrix C
alpha (scalar): Coefficient
beta (scalar): Coefficient
transa (bool): If ``True``, op(A) = transpose of A.
transb (bool): If ``True``, op(B) = transpose of B.
Returns:
cupy.ndarray
"""
if not check_availability('spmm'):
raise RuntimeError('spmm is not available.')
assert a.ndim == b.ndim == 2
assert b.flags.f_contiguous
assert c is None or c.flags.f_contiguous
if isinstance(a, cupyx.scipy.sparse.csc_matrix):
aT = a.T
if not isinstance(aT, cupyx.scipy.sparse.csr_matrix):
msg = 'aT must be csr_matrix (actual: {})'.format(type(aT))
raise TypeError(msg)
a = aT
transa = not transa
if not isinstance(a, (cupyx.scipy.sparse.csr_matrix,
cupyx.scipy.sparse.coo_matrix)):
raise TypeError('unsupported type (actual: {})'.format(type(a)))
a_shape = a.shape if not transa else a.shape[::-1]
b_shape = b.shape if not transb else b.shape[::-1]
if a_shape[1] != b_shape[0]:
raise ValueError('dimension mismatch')
assert a.has_canonical_format
m, k = a_shape
_, n = b_shape
a, b, c = _cast_common_type(a, b, c)
if c is None:
c = _cupy.zeros((m, n), a.dtype, 'F')
elif c.shape[0] != m or c.shape[1] != n:
raise ValueError('dimension mismatch')
if a.nnz == 0:
c.fill(0)
return c
desc_a = SpMatDescriptor.create(a)
desc_b = DnMatDescriptor.create(b)
desc_c = DnMatDescriptor.create(c)
handle = _device.get_cusparse_handle()
op_a = _transpose_flag(transa)
op_b = _transpose_flag(transb)
alpha = _numpy.array(alpha, a.dtype).ctypes
beta = _numpy.array(beta, a.dtype).ctypes
cuda_dtype = _dtype.to_cuda_dtype(a.dtype)
alg = _cusparse.CUSPARSE_MM_ALG_DEFAULT
buff_size = _cusparse.spMM_bufferSize(handle, op_a, op_b, alpha.data,
desc_a.desc, desc_b.desc, beta.data,
desc_c.desc, cuda_dtype, alg)
buff = _cupy.empty(buff_size, _cupy.int8)
buff_size = _cusparse.spMM(handle, op_a, op_b, alpha.data, desc_a.desc,
desc_b.desc, beta.data, desc_c.desc,
cuda_dtype, alg, buff.data.ptr)
return c
def csrsm2(a, b, alpha=1.0, lower=True, unit_diag=False, transa=False,
blocking=True, level_info=False):
"""Solves a sparse triangular linear system op(a) * x = alpha * b.
Args:
a (cupyx.scipy.sparse.csr_matrix or cupyx.scipy.sparse.csc_matrix):
Sparse matrix with dimension ``(M, M)``.
b (cupy.ndarray): Dense vector or matrix with dimension ``(M)`` or
``(M, K)``.
alpha (float or complex): Coefficient.
lower (bool):
True: ``a`` is lower triangle matrix.
False: ``a`` is upper triangle matrix.
unit_diag (bool):
True: diagonal part of ``a`` has unit elements.
False: diagonal part of ``a`` has non-unit elements.
transa (bool or str): True, False, 'N', 'T' or 'H'.
'N' or False: op(a) == ``a``.
'T' or True: op(a) == ``a.T``.
'H': op(a) == ``a.conj().T``.
blocking (bool):
True: blocking algorithm is used.
False: non-blocking algorithm is used.
level_info (bool):
True: solves it with level information.
False: solves it without level information.
Note: ``b`` will be overwritten.
"""
if not check_availability('csrsm2'):
raise RuntimeError('csrsm2 is not available.')
if not (cupyx.scipy.sparse.isspmatrix_csr(a) or
cupyx.scipy.sparse.isspmatrix_csc(a)):
raise ValueError('a must be CSR or CSC sparse matrix')
if not isinstance(b, _cupy.ndarray):
raise ValueError('b must be cupy.ndarray')
if b.ndim not in (1, 2):
raise ValueError('b.ndim must be 1 or 2')
if not (a.shape[0] == a.shape[1] == b.shape[0]):
raise ValueError('invalid shape')
if a.dtype != b.dtype:
raise TypeError('dtype mismatch')
if lower is True:
fill_mode = _cusparse.CUSPARSE_FILL_MODE_LOWER
elif lower is False:
fill_mode = _cusparse.CUSPARSE_FILL_MODE_UPPER
else:
raise ValueError('Unknown lower (actual: {})'.format(lower))
if unit_diag is False:
diag_type = _cusparse.CUSPARSE_DIAG_TYPE_NON_UNIT
elif unit_diag is True:
diag_type = _cusparse.CUSPARSE_DIAG_TYPE_UNIT
else:
raise ValueError('Unknown unit_diag (actual: {})'.format(unit_diag))
if blocking is False:
algo = 0
elif blocking is True:
algo = 1
else:
raise ValueError('Unknown blocking (actual: {})'.format(blocking))
if level_info is False:
policy = _cusparse.CUSPARSE_SOLVE_POLICY_NO_LEVEL
elif level_info is True:
policy = _cusparse.CUSPARSE_SOLVE_POLICY_USE_LEVEL
else:
raise ValueError('Unknown level_info (actual: {})'.format(level_info))
dtype = a.dtype
if dtype.char == 'f':
t = 's'
elif dtype.char == 'd':
t = 'd'
elif dtype.char == 'F':
t = 'c'
elif dtype.char == 'D':
t = 'z'
else:
raise TypeError('Invalid dtype (actual: {})'.format(dtype))
helper = getattr(_cusparse, t + 'csrsm2_bufferSizeExt')
analysis = getattr(_cusparse, t + 'csrsm2_analysis')
solve = getattr(_cusparse, t + 'csrsm2_solve')
if transa is False or transa == 'N':
transa = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
elif transa is True or transa == 'T':
transa = _cusparse.CUSPARSE_OPERATION_TRANSPOSE
elif transa == 'H':
if dtype.char in 'fd':
transa = _cusparse.CUSPARSE_OPERATION_TRANSPOSE
else:
transa = _cusparse.CUSPARSE_OPERATION_CONJUGATE_TRANSPOSE
else:
raise ValueError('Unknown transa (actual: {})'.format(transa))
if cupyx.scipy.sparse.isspmatrix_csc(a):
if transa == _cusparse.CUSPARSE_OPERATION_CONJUGATE_TRANSPOSE:
raise ValueError('If matrix is CSC format and complex dtype,'
'transa must not be \'H\'')
a = a.T
assert cupyx.scipy.sparse.isspmatrix_csr(a)
transa = 1 - transa
fill_mode = 1 - fill_mode
m = a.shape[0]
nrhs = 1 if b.ndim == 1 else b.shape[1]
if b._f_contiguous:
transb = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
ldb = m
elif b._c_contiguous:
transb = _cusparse.CUSPARSE_OPERATION_TRANSPOSE
ldb = nrhs
else:
raise ValueError('b must be F-contiguous or C-contiguous.')
handle = _device.get_cusparse_handle()
alpha = _numpy.array(alpha, dtype=dtype)
a_desc = MatDescriptor.create()
a_desc.set_mat_type(_cusparse.CUSPARSE_MATRIX_TYPE_GENERAL)
a_desc.set_mat_index_base(_cusparse.CUSPARSE_INDEX_BASE_ZERO)
a_desc.set_mat_fill_mode(fill_mode)
a_desc.set_mat_diag_type(diag_type)
info = _cusparse.createCsrsm2Info()
ws_size = helper(handle, algo, transa, transb, m, nrhs, a.nnz,
alpha.ctypes.data, a_desc.descriptor, a.data.data.ptr,
a.indptr.data.ptr, a.indices.data.ptr, b.data.ptr, ldb,
info, policy)
ws = _cupy.empty((ws_size,), dtype=_numpy.int8)
analysis(handle, algo, transa, transb, m, nrhs, a.nnz, alpha.ctypes.data,
a_desc.descriptor, a.data.data.ptr, a.indptr.data.ptr,
a.indices.data.ptr, b.data.ptr, ldb, info, policy, ws.data.ptr)
solve(handle, algo, transa, transb, m, nrhs, a.nnz, alpha.ctypes.data,
a_desc.descriptor, a.data.data.ptr, a.indptr.data.ptr,
a.indices.data.ptr, b.data.ptr, ldb, info, policy, ws.data.ptr)
# without sync we'd get either segfault or cuda context error
_stream.get_current_stream().synchronize()
_cusparse.destroyCsrsm2Info(info)
def csrilu02(a, level_info=False):
"""Computes incomplete LU decomposition for a sparse square matrix.
Args:
a (cupyx.scipy.sparse.csr_matrix):
Sparse matrix with dimension ``(M, M)``.
level_info (bool):
True: solves it with level information.
False: solves it without level information.
Note: ``a`` will be overwritten. This function does not support fill-in
(only ILU(0) is supported) nor pivoting.
"""
if not check_availability('csrilu02'):
raise RuntimeError('csrilu02 is not available.')
if not cupyx.scipy.sparse.isspmatrix_csr(a):
raise TypeError('a must be CSR sparse matrix')
if a.shape[0] != a.shape[1]:
raise ValueError('invalid shape (a.shape: {})'.format(a.shape))
if level_info is False:
policy = _cusparse.CUSPARSE_SOLVE_POLICY_NO_LEVEL
elif level_info is True:
policy = _cusparse.CUSPARSE_SOLVE_POLICY_USE_LEVEL
else:
raise ValueError('Unknown level_info (actual: {})'.format(level_info))
dtype = a.dtype
if dtype.char == 'f':
t = 's'
elif dtype.char == 'd':
t = 'd'
elif dtype.char == 'F':
t = 'c'
elif dtype.char == 'D':
t = 'z'
else:
raise TypeError('Invalid dtype (actual: {})'.format(dtype))
helper = getattr(_cusparse, t + 'csrilu02_bufferSize')
analysis = getattr(_cusparse, t + 'csrilu02_analysis')
solve = getattr(_cusparse, t + 'csrilu02')
check = getattr(_cusparse, 'xcsrilu02_zeroPivot')
handle = _device.get_cusparse_handle()
m = a.shape[0]
nnz = a.nnz
desc = MatDescriptor.create()
desc.set_mat_type(_cusparse.CUSPARSE_MATRIX_TYPE_GENERAL)
desc.set_mat_index_base(_cusparse.CUSPARSE_INDEX_BASE_ZERO)
info = _cusparse.createCsrilu02Info()
ws_size = helper(handle, m, nnz, desc.descriptor, a.data.data.ptr,
a.indptr.data.ptr, a.indices.data.ptr, info)
ws = _cupy.empty((ws_size,), dtype=_numpy.int8)
position = _numpy.empty((1,), dtype=_numpy.int32)
analysis(handle, m, nnz, desc.descriptor, a.data.data.ptr,
a.indptr.data.ptr, a.indices.data.ptr, info, policy, ws.data.ptr)
try:
check(handle, info, position.ctypes.data)
except Exception:
raise ValueError('a({0},{0}) is missing'.format(position[0]))
solve(handle, m, nnz, desc.descriptor, a.data.data.ptr,
a.indptr.data.ptr, a.indices.data.ptr, info, policy, ws.data.ptr)
try:
check(handle, info, position.ctypes.data)
except Exception:
raise ValueError('u({0},{0}) is zero'.format(position[0]))
def denseToSparse(x, format='csr'):
"""Converts a dense matrix into a CSR, CSC or COO format.
Args:
x (cupy.ndarray): A matrix to be converted.
format (str): Format of converted matrix. It must be either 'csr',
'csc' or 'coo'.
Returns:
cupyx.scipy.sparse.spmatrix: A converted sparse matrix.
"""
if not check_availability('denseToSparse'):
raise RuntimeError('denseToSparse is not available.')
assert x.ndim == 2
assert x.dtype.char in 'fdFD'
x = _cupy.asfortranarray(x)
desc_x = DnMatDescriptor.create(x)
if format == 'csr':
y = cupyx.scipy.sparse.csr_matrix(x.shape, dtype=x.dtype)
elif format == 'csc':
y = cupyx.scipy.sparse.csc_matrix(x.shape, dtype=x.dtype)
elif format == 'coo':
y = cupyx.scipy.sparse.coo_matrix(x.shape, dtype=x.dtype)
else:
raise TypeError('unsupported format (actual: {})'.format(format))
desc_y = SpMatDescriptor.create(y)
algo = _cusparse.CUSPARSE_DENSETOSPARSE_ALG_DEFAULT
handle = _device.get_cusparse_handle()
buff_size = _cusparse.denseToSparse_bufferSize(handle, desc_x.desc,
desc_y.desc, algo)
buff = _cupy.empty(buff_size, _cupy.int8)
_cusparse.denseToSparse_analysis(handle, desc_x.desc,
desc_y.desc, algo, buff.data.ptr)
num_rows_tmp = _numpy.array(0, dtype='int64')
num_cols_tmp = _numpy.array(0, dtype='int64')
nnz = _numpy.array(0, dtype='int64')
_cusparse.spMatGetSize(desc_y.desc, num_rows_tmp.ctypes.data,
num_cols_tmp.ctypes.data, nnz.ctypes.data)
nnz = int(nnz)
if _runtime.is_hip:
if nnz == 0:
raise ValueError('hipSPARSE currently cannot handle '
'sparse matrices with null ptrs')
if format == 'csr':
indptr = y.indptr
indices = _cupy.empty(nnz, 'i')
data = _cupy.empty(nnz, x.dtype)
y = cupyx.scipy.sparse.csr_matrix((data, indices, indptr),
shape=x.shape)
elif format == 'csc':
indptr = y.indptr
indices = _cupy.empty(nnz, 'i')
data = _cupy.empty(nnz, x.dtype)
y = cupyx.scipy.sparse.csc_matrix((data, indices, indptr),
shape=x.shape)
elif format == 'coo':
row = _cupy.zeros(nnz, 'i')
col = _cupy.zeros(nnz, 'i')
# Note: I would like to use empty() here, but that might cause an
# exception in the row/col number check when creating the coo_matrix,
# so I used zeros() instead.
data = _cupy.empty(nnz, x.dtype)
y = cupyx.scipy.sparse.coo_matrix((data, (row, col)), shape=x.shape)
desc_y = SpMatDescriptor.create(y)
_cusparse.denseToSparse_convert(handle, desc_x.desc,
desc_y.desc, algo, buff.data.ptr)
y._has_canonical_format = True
return y
def sparseToDense(x, out=None):
"""Converts sparse matrix to a dense matrix.
Args:
x (cupyx.scipy.sparse.spmatrix): A sparse matrix to convert.
out (cupy.ndarray or None): A dense metrix to store the result.
It must be F-contiguous.
Returns:
cupy.ndarray: A converted dense matrix.
"""
if not check_availability('sparseToDense'):
raise RuntimeError('sparseToDense is not available.')
dtype = x.dtype
assert dtype.char in 'fdFD'
if out is None:
out = _cupy.zeros(x.shape, dtype=dtype, order='F')
else:
assert out.flags.f_contiguous
assert out.dtype == dtype
desc_x = SpMatDescriptor.create(x)
desc_out = DnMatDescriptor.create(out)
algo = _cusparse.CUSPARSE_SPARSETODENSE_ALG_DEFAULT
handle = _device.get_cusparse_handle()
buff_size = _cusparse.sparseToDense_bufferSize(handle, desc_x.desc,
desc_out.desc, algo)
buff = _cupy.empty(buff_size, _cupy.int8)
if _runtime.is_hip:
if x.nnz == 0:
raise ValueError('hipSPARSE currently cannot handle '
'sparse matrices with null ptrs')
_cusparse.sparseToDense(handle, desc_x.desc,
desc_out.desc, algo, buff.data.ptr)
return out
def spsm(a, b, alpha=1.0, lower=True, unit_diag=False, transa=False):
"""Solves a sparse triangular linear system op(a) * x = alpha * op(b).
Args:
a (cupyx.scipy.sparse.csr_matrix or cupyx.scipy.sparse.coo_matrix):
Sparse matrix with dimension ``(M, M)``.
b (cupy.ndarray): Dense matrix with dimension ``(M, K)``.
alpha (float or complex): Coefficient.
lower (bool):
True: ``a`` is lower triangle matrix.
False: ``a`` is upper triangle matrix.
unit_diag (bool):
True: diagonal part of ``a`` has unit elements.
False: diagonal part of ``a`` has non-unit elements.
transa (bool or str): True, False, 'N', 'T' or 'H'.
'N' or False: op(a) == ``a``.
'T' or True: op(a) == ``a.T``.
'H': op(a) == ``a.conj().T``.
"""
if not check_availability('spsm'):
raise RuntimeError('spsm is not available.')
# Canonicalise transa
if transa is False:
transa = 'N'
elif transa is True:
transa = 'T'
elif transa not in 'NTH':
raise ValueError(f'Unknown transa (actual: {transa})')
# Check A's type and sparse format
if cupyx.scipy.sparse.isspmatrix_csr(a):
pass
elif cupyx.scipy.sparse.isspmatrix_csc(a):
if transa == 'N':
a = a.T
transa = 'T'
elif transa == 'T':
a = a.T
transa = 'N'
elif transa == 'H':
a = a.conj().T
transa = 'N'
lower = not lower
elif cupyx.scipy.sparse.isspmatrix_coo(a):
pass
else:
raise ValueError('a must be CSR, CSC or COO sparse matrix')
assert a.has_canonical_format
# Check B's ndim
if b.ndim == 1:
is_b_vector = True
b = b.reshape(-1, 1)
elif b.ndim == 2:
is_b_vector = False
else:
raise ValueError('b.ndim must be 1 or 2')
# Check shapes
if not (a.shape[0] == a.shape[1] == b.shape[0]):
raise ValueError('mismatched shape')
# Check dtypes
dtype = a.dtype
if dtype.char not in 'fdFD':
raise TypeError('Invalid dtype (actual: {})'.format(dtype))
if dtype != b.dtype:
raise TypeError('dtype mismatch')
# Prepare fill mode
if lower is True:
fill_mode = _cusparse.CUSPARSE_FILL_MODE_LOWER
elif lower is False:
fill_mode = _cusparse.CUSPARSE_FILL_MODE_UPPER
else:
raise ValueError('Unknown lower (actual: {})'.format(lower))
# Prepare diag type
if unit_diag is False:
diag_type = _cusparse.CUSPARSE_DIAG_TYPE_NON_UNIT
elif unit_diag is True:
diag_type = _cusparse.CUSPARSE_DIAG_TYPE_UNIT
else:
raise ValueError('Unknown unit_diag (actual: {})'.format(unit_diag))
# Prepare op_a
if transa == 'N':
op_a = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
elif transa == 'T':
op_a = _cusparse.CUSPARSE_OPERATION_TRANSPOSE
else: # transa == 'H'
if dtype.char in 'fd':
op_a = _cusparse.CUSPARSE_OPERATION_TRANSPOSE
else:
op_a = _cusparse.CUSPARSE_OPERATION_CONJUGATE_TRANSPOSE
# Prepare op_b
if b._f_contiguous:
op_b = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
elif b._c_contiguous:
if _cusparse.get_build_version() < 11701: # earlier than CUDA 11.6
raise ValueError('b must be F-contiguous.')
b = b.T
op_b = _cusparse.CUSPARSE_OPERATION_TRANSPOSE
else:
raise ValueError('b must be F-contiguous or C-contiguous.')
# Allocate space for matrix C. Note that it is known cusparseSpSM requires
# the output matrix zero initialized.
m, _ = a.shape
if op_b == _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE:
_, n = b.shape
else:
n, _ = b.shape
c_shape = m, n
c = _cupy.zeros(c_shape, dtype=a.dtype, order='f')
# Prepare descriptors and other parameters
handle = _device.get_cusparse_handle()
mat_a = SpMatDescriptor.create(a)
mat_b = DnMatDescriptor.create(b)
mat_c = DnMatDescriptor.create(c)
spsm_descr = _cusparse.spSM_createDescr()
alpha = _numpy.array(alpha, dtype=c.dtype).ctypes
cuda_dtype = _dtype.to_cuda_dtype(c.dtype)
algo = _cusparse.CUSPARSE_SPSM_ALG_DEFAULT
try:
# Specify Lower|Upper fill mode
mat_a.set_attribute(_cusparse.CUSPARSE_SPMAT_FILL_MODE, fill_mode)
# Specify Unit|Non-Unit diagonal type
mat_a.set_attribute(_cusparse.CUSPARSE_SPMAT_DIAG_TYPE, diag_type)
# Allocate the workspace needed by the succeeding phases
buff_size = _cusparse.spSM_bufferSize(
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc,
mat_c.desc, cuda_dtype, algo, spsm_descr)
buff = _cupy.empty(buff_size, dtype=_cupy.int8)
# Perform the analysis phase
_cusparse.spSM_analysis(
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc,
mat_c.desc, cuda_dtype, algo, spsm_descr, buff.data.ptr)
# Executes the solve phase
_cusparse.spSM_solve(
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc,
mat_c.desc, cuda_dtype, algo, spsm_descr, buff.data.ptr)
# Reshape back if B was a vector
if is_b_vector:
c = c.reshape(-1)
return c
finally:
# Destroy matrix/vector descriptors
_cusparse.spSM_destroyDescr(spsm_descr)
def spgemm(a, b, alpha=1):
"""Matrix-matrix product for CSR-matrix.
math::
C = alpha * A * B
Args:
a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A.
b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B.
alpha (scalar): Coefficient
Returns:
cupyx.scipy.sparse.csr_matrix
"""
if not check_availability('spgemm'):
raise RuntimeError('spgemm is not available.')
assert a.ndim == b.ndim == 2
if not isinstance(a, cupyx.scipy.sparse.csr_matrix):
raise TypeError('unsupported type (actual: {})'.format(type(a)))
if not isinstance(b, cupyx.scipy.sparse.csr_matrix):
raise TypeError('unsupported type (actual: {})'.format(type(b)))
assert a.has_canonical_format
assert b.has_canonical_format
if a.shape[1] != b.shape[0]:
raise ValueError('mismatched shape')
m, k = a.shape
_, n = b.shape
a, b = _cast_common_type(a, b)
c_shape = (m, n)
c = cupyx.scipy.sparse.csr_matrix((c_shape), dtype=a.dtype)
handle = _device.get_cusparse_handle()
mat_a = SpMatDescriptor.create(a)
mat_b = SpMatDescriptor.create(b)
mat_c = SpMatDescriptor.create(c)
spgemm_descr = _cusparse.spGEMM_createDescr()
op_a = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
op_b = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
alpha = _numpy.array(alpha, dtype=c.dtype).ctypes
beta = _numpy.array(0, dtype=c.dtype).ctypes
cuda_dtype = _dtype.to_cuda_dtype(c.dtype)
algo = _cusparse.CUSPARSE_SPGEMM_DEFAULT
null_ptr = 0
# Analyze the matrices A and B to understand the memory requirement
buff1_size = _cusparse.spGEMM_workEstimation(
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data,
mat_c.desc, cuda_dtype, algo, spgemm_descr, 0, null_ptr)
buff1 = _cupy.empty(buff1_size, _cupy.int8)
_cusparse.spGEMM_workEstimation(
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data,
mat_c.desc, cuda_dtype, algo, spgemm_descr, buff1_size, buff1.data.ptr)
# Compute the intermediate product of A and B
buff2_size = _cusparse.spGEMM_compute(
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data,
mat_c.desc, cuda_dtype, algo, spgemm_descr, 0, null_ptr)
buff2 = _cupy.empty(buff2_size, _cupy.int8)
_cusparse.spGEMM_compute(
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data,
mat_c.desc, cuda_dtype, algo, spgemm_descr, buff2_size, buff2.data.ptr)
# Prepare the arrays for matrix C
c_num_rows = _numpy.array(0, dtype='int64')
c_num_cols = _numpy.array(0, dtype='int64')
c_nnz = _numpy.array(0, dtype='int64')
_cusparse.spMatGetSize(mat_c.desc, c_num_rows.ctypes.data,
c_num_cols.ctypes.data, c_nnz.ctypes.data)
assert c_shape[0] == int(c_num_rows)
assert c_shape[1] == int(c_num_cols)
c_nnz = int(c_nnz)
c_indptr = c.indptr
c_indices = _cupy.empty(c_nnz, 'i')
c_data = _cupy.empty(c_nnz, c.dtype)
_cusparse.csrSetPointers(mat_c.desc, c_indptr.data.ptr, c_indices.data.ptr,
c_data.data.ptr)
# Copy the final product to the matrix C
_cusparse.spGEMM_copy(
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data,
mat_c.desc, cuda_dtype, algo, spgemm_descr)
c = cupyx.scipy.sparse.csr_matrix((c_data, c_indices, c_indptr),
shape=c_shape)
_cusparse.spGEMM_destroyDescr(spgemm_descr)
return c