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import functools as _functools |
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import numpy as _numpy |
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import platform as _platform |
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import cupy as _cupy |
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from cupy_backends.cuda.api import driver as _driver |
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from cupy_backends.cuda.api import runtime as _runtime |
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from cupy_backends.cuda.libs import cusparse as _cusparse |
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from cupy._core import _dtype |
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from cupy.cuda import device as _device |
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from cupy.cuda import stream as _stream |
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from cupy import _util |
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import cupyx.scipy.sparse |
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class MatDescriptor(object): |
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def __init__(self, descriptor): |
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self.descriptor = descriptor |
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@classmethod |
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def create(cls): |
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descr = _cusparse.createMatDescr() |
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return MatDescriptor(descr) |
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def __reduce__(self): |
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return self.create, () |
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def __del__(self, is_shutting_down=_util.is_shutting_down): |
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if is_shutting_down(): |
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return |
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if self.descriptor: |
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_cusparse.destroyMatDescr(self.descriptor) |
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self.descriptor = None |
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def set_mat_type(self, typ): |
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_cusparse.setMatType(self.descriptor, typ) |
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def set_mat_index_base(self, base): |
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_cusparse.setMatIndexBase(self.descriptor, base) |
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def set_mat_fill_mode(self, fill_mode): |
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_cusparse.setMatFillMode(self.descriptor, fill_mode) |
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def set_mat_diag_type(self, diag_type): |
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_cusparse.setMatDiagType(self.descriptor, diag_type) |
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def _cast_common_type(*xs): |
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dtypes = [x.dtype for x in xs if x is not None] |
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dtype = _functools.reduce(_numpy.promote_types, dtypes) |
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return [x.astype(dtype) if x is not None and x.dtype != dtype else x |
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for x in xs] |
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def _transpose_flag(trans): |
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if trans: |
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return _cusparse.CUSPARSE_OPERATION_TRANSPOSE |
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else: |
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return _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE |
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def _call_cusparse(name, dtype, *args): |
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if dtype == 'f': |
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prefix = 's' |
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elif dtype == 'd': |
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prefix = 'd' |
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elif dtype == 'F': |
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prefix = 'c' |
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elif dtype == 'D': |
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prefix = 'z' |
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else: |
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raise TypeError |
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f = getattr(_cusparse, prefix + name) |
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return f(*args) |
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_available_cusparse_version = { |
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'csrmv': (8000, 11000), |
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'csrmvEx': (8000, 11000), |
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'csrmm': (8000, 11000), |
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'csrmm2': (8000, 11000), |
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'csrgeam': (8000, 11000), |
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'csrgeam2': (9020, None), |
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'csrgemm': (8000, 11000), |
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'csrgemm2': (8000, 12000), |
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'gthr': (8000, 12000), |
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'spmv': ({'Linux': 10200, 'Windows': 11000}, None), |
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'spmm': ({'Linux': 10301, 'Windows': 11000}, None), |
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'csr2dense': (8000, 12000), |
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'csc2dense': (8000, 12000), |
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'csrsort': (8000, None), |
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'cscsort': (8000, None), |
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'coosort': (8000, None), |
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'coo2csr': (8000, None), |
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'csr2coo': (8000, None), |
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'csr2csc': (8000, 11000), |
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'csc2csr': (8000, 11000), |
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'csr2cscEx2': (10200, None), |
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'csc2csrEx2': (10200, None), |
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'dense2csc': (8000, None), |
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'dense2csr': (8000, None), |
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'csr2csr_compress': (8000, None), |
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'csrsm2': (9020, 12000), |
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'csrilu02': (8000, None), |
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'denseToSparse': (11300, None), |
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'sparseToDense': (11300, None), |
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'spgemm': (11100, None), |
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'spsm': (11600, None), |
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} |
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_available_hipsparse_version = { |
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'csrmv': (305, None), |
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'csrmvEx': (_numpy.inf, None), |
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'csrmm': (305, None), |
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'csrmm2': (305, None), |
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'csrgeam': (305, None), |
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'csrgeam2': (305, None), |
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'csrgemm': (305, None), |
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'csrgemm2': (305, None), |
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'gthr': (305, None), |
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'spmv': (402, None), |
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'spmm': (402, None), |
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'csr2dense': (305, None), |
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'csc2dense': (305, None), |
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'csrsort': (305, None), |
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'cscsort': (305, None), |
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'coosort': (305, None), |
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'coo2csr': (305, None), |
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'csr2coo': (305, None), |
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'csr2csc': (305, None), |
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'csc2csr': (305, None), |
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'csr2cscEx2': (_numpy.inf, None), |
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'csc2csrEx2': (_numpy.inf, None), |
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'dense2csc': (305, None), |
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'dense2csr': (305, None), |
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'csr2csr_compress': (305, None), |
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'csrsm2': (305, None), |
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'csrilu02': (305, None), |
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'denseToSparse': (402, None), |
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'sparseToDense': (402, None), |
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'spgemm': (_numpy.inf, None), |
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'spsm': (50000000, None), |
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} |
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def _get_avail_version_from_spec(x): |
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if isinstance(x, dict): |
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os_name = _platform.system() |
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if os_name not in x: |
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msg = 'No version information specified for the OS: {}'.format( |
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os_name) |
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raise ValueError(msg) |
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return x[os_name] |
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return x |
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@_util.memoize() |
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def check_availability(name): |
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if not _runtime.is_hip: |
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available_version = _available_cusparse_version |
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version = _cusparse.get_build_version() |
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else: |
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available_version = _available_hipsparse_version |
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version = _driver.get_build_version() |
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if name not in available_version: |
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msg = 'No available version information specified for {}'.format(name) |
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raise ValueError(msg) |
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version_added, version_removed = available_version[name] |
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version_added = _get_avail_version_from_spec(version_added) |
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version_removed = _get_avail_version_from_spec(version_removed) |
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if version_added is not None and version < version_added: |
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return False |
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if version_removed is not None and version >= version_removed: |
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return False |
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return True |
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def getVersion() -> int: |
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return _cusparse.getVersion(_device.get_cusparse_handle()) |
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def csrmv(a, x, y=None, alpha=1, beta=0, transa=False): |
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"""Matrix-vector product for a CSR-matrix and a dense vector. |
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.. math:: |
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y = \\alpha * o_a(A) x + \\beta y, |
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where :math:`o_a` is a transpose function when ``transa`` is ``True`` and |
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is an identity function otherwise. |
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Args: |
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a (cupyx.cusparse.csr_matrix): Matrix A. |
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x (cupy.ndarray): Vector x. |
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y (cupy.ndarray or None): Vector y. It must be F-contiguous. |
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alpha (float): Coefficient for x. |
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beta (float): Coefficient for y. |
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transa (bool): If ``True``, transpose of ``A`` is used. |
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Returns: |
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cupy.ndarray: Calculated ``y``. |
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""" |
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if not check_availability('csrmv'): |
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raise RuntimeError('csrmv is not available.') |
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assert y is None or y.flags.f_contiguous |
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a_shape = a.shape if not transa else a.shape[::-1] |
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if a_shape[1] != len(x): |
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raise ValueError('dimension mismatch') |
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handle = _device.get_cusparse_handle() |
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m, n = a_shape |
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a, x, y = _cast_common_type(a, x, y) |
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dtype = a.dtype |
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if y is None: |
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y = _cupy.zeros(m, dtype) |
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alpha = _numpy.array(alpha, dtype).ctypes |
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beta = _numpy.array(beta, dtype).ctypes |
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_call_cusparse( |
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'csrmv', dtype, |
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handle, _transpose_flag(transa), |
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a.shape[0], a.shape[1], a.nnz, alpha.data, a._descr.descriptor, |
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a.data.data.ptr, a.indptr.data.ptr, a.indices.data.ptr, |
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x.data.ptr, beta.data, y.data.ptr) |
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return y |
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def csrmvExIsAligned(a, x, y=None): |
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"""Check if the pointers of arguments for csrmvEx are aligned or not |
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Args: |
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a (cupyx.cusparse.csr_matrix): Matrix A. |
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x (cupy.ndarray): Vector x. |
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y (cupy.ndarray or None): Vector y. |
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Check if a, x, y pointers are aligned by 128 bytes as |
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required by csrmvEx. |
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Returns: |
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bool: |
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``True`` if all pointers are aligned. |
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``False`` if otherwise. |
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""" |
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if a.data.data.ptr % 128 != 0: |
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return False |
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if a.indptr.data.ptr % 128 != 0: |
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return False |
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if a.indices.data.ptr % 128 != 0: |
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return False |
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if x.data.ptr % 128 != 0: |
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return False |
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if y is not None and y.data.ptr % 128 != 0: |
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return False |
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return True |
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def csrmvEx(a, x, y=None, alpha=1, beta=0, merge_path=True): |
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"""Matrix-vector product for a CSR-matrix and a dense vector. |
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.. math:: |
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y = \\alpha * A x + \\beta y, |
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Args: |
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a (cupyx.cusparse.csr_matrix): Matrix A. |
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x (cupy.ndarray): Vector x. |
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y (cupy.ndarray or None): Vector y. It must be F-contiguous. |
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alpha (float): Coefficient for x. |
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beta (float): Coefficient for y. |
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merge_path (bool): If ``True``, merge path algorithm is used. |
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All pointers must be aligned with 128 bytes. |
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Returns: |
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cupy.ndarray: Calculated ``y``. |
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""" |
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if not check_availability('csrmvEx'): |
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raise RuntimeError('csrmvEx is not available.') |
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assert y is None or y.flags.f_contiguous |
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if a.shape[1] != len(x): |
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raise ValueError('dimension mismatch') |
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handle = _device.get_cusparse_handle() |
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m, n = a.shape |
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a, x, y = _cast_common_type(a, x, y) |
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dtype = a.dtype |
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if y is None: |
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y = _cupy.zeros(m, dtype) |
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datatype = _dtype.to_cuda_dtype(dtype) |
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algmode = _cusparse.CUSPARSE_ALG_MERGE_PATH if \ |
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merge_path else _cusparse.CUSPARSE_ALG_NAIVE |
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transa_flag = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE |
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alpha = _numpy.array(alpha, dtype).ctypes |
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beta = _numpy.array(beta, dtype).ctypes |
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assert csrmvExIsAligned(a, x, y) |
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bufferSize = _cusparse.csrmvEx_bufferSize( |
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handle, algmode, transa_flag, |
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a.shape[0], a.shape[1], a.nnz, alpha.data, datatype, |
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a._descr.descriptor, a.data.data.ptr, datatype, |
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a.indptr.data.ptr, a.indices.data.ptr, |
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x.data.ptr, datatype, beta.data, datatype, |
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y.data.ptr, datatype, datatype) |
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buf = _cupy.empty(bufferSize, 'b') |
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assert buf.data.ptr % 128 == 0 |
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_cusparse.csrmvEx( |
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handle, algmode, transa_flag, |
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a.shape[0], a.shape[1], a.nnz, alpha.data, datatype, |
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a._descr.descriptor, a.data.data.ptr, datatype, |
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a.indptr.data.ptr, a.indices.data.ptr, |
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x.data.ptr, datatype, beta.data, datatype, |
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y.data.ptr, datatype, datatype, buf.data.ptr) |
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return y |
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def csrmm(a, b, c=None, alpha=1, beta=0, transa=False): |
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"""Matrix-matrix product for a CSR-matrix and a dense matrix. |
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|
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.. math:: |
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C = \\alpha o_a(A) B + \\beta C, |
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where :math:`o_a` is a transpose function when ``transa`` is ``True`` and |
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is an identity function otherwise. |
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Args: |
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a (cupyx.scipy.sparse.csr): Sparse matrix A. |
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b (cupy.ndarray): Dense matrix B. It must be F-contiguous. |
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c (cupy.ndarray or None): Dense matrix C. It must be F-contiguous. |
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alpha (float): Coefficient for AB. |
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beta (float): Coefficient for C. |
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transa (bool): If ``True``, transpose of A is used. |
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Returns: |
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cupy.ndarray: Calculated C. |
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""" |
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if not check_availability('csrmm'): |
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raise RuntimeError('csrmm is not available.') |
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assert a.ndim == b.ndim == 2 |
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assert b.flags.f_contiguous |
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assert c is None or c.flags.f_contiguous |
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a_shape = a.shape if not transa else a.shape[::-1] |
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if a_shape[1] != b.shape[0]: |
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raise ValueError('dimension mismatch') |
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handle = _device.get_cusparse_handle() |
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m, k = a_shape |
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n = b.shape[1] |
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a, b, c = _cast_common_type(a, b, c) |
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if c is None: |
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c = _cupy.zeros((m, n), a.dtype, 'F') |
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ldb = k |
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ldc = m |
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alpha = _numpy.array(alpha, a.dtype).ctypes |
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beta = _numpy.array(beta, a.dtype).ctypes |
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_call_cusparse( |
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'csrmm', a.dtype, |
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handle, _transpose_flag(transa), |
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a.shape[0], n, a.shape[1], a.nnz, |
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alpha.data, a._descr.descriptor, a.data.data.ptr, |
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a.indptr.data.ptr, a.indices.data.ptr, |
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b.data.ptr, ldb, beta.data, c.data.ptr, ldc) |
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return c |
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def csrmm2(a, b, c=None, alpha=1.0, beta=0.0, transa=False, transb=False): |
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"""Matrix-matrix product for a CSR-matrix and a dense matrix. |
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|
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.. math:: |
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C = \\alpha o_a(A) o_b(B) + \\beta C, |
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|
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where :math:`o_a` and :math:`o_b` are transpose functions when ``transa`` |
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and ``tranb`` are ``True`` respectively. And they are identity functions |
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otherwise. |
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It is forbidden that both ``transa`` and ``transb`` are ``True`` in |
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cuSPARSE specification. |
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|
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Args: |
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a (cupyx.scipy.sparse.csr): Sparse matrix A. |
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b (cupy.ndarray): Dense matrix B. It must be F-contiguous. |
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c (cupy.ndarray or None): Dense matrix C. It must be F-contiguous. |
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alpha (float): Coefficient for AB. |
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beta (float): Coefficient for C. |
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transa (bool): If ``True``, transpose of A is used. |
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transb (bool): If ``True``, transpose of B is used. |
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Returns: |
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cupy.ndarray: Calculated C. |
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""" |
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if not check_availability('csrmm2'): |
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raise RuntimeError('csrmm2 is not available.') |
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assert a.ndim == b.ndim == 2 |
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assert a.has_canonical_format |
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assert b.flags.f_contiguous |
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assert c is None or c.flags.f_contiguous |
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assert not (transa and transb) |
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a_shape = a.shape if not transa else a.shape[::-1] |
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b_shape = b.shape if not transb else b.shape[::-1] |
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if a_shape[1] != b_shape[0]: |
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raise ValueError('dimension mismatch') |
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handle = _device.get_cusparse_handle() |
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m, k = a_shape |
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n = b_shape[1] |
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a, b, c = _cast_common_type(a, b, c) |
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if c is None: |
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c = _cupy.zeros((m, n), a.dtype, 'F') |
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ldb = b.shape[0] |
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ldc = c.shape[0] |
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op_a = _transpose_flag(transa) |
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op_b = _transpose_flag(transb) |
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alpha = _numpy.array(alpha, a.dtype).ctypes |
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beta = _numpy.array(beta, a.dtype).ctypes |
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_call_cusparse( |
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'csrmm2', a.dtype, |
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handle, op_a, op_b, a.shape[0], n, a.shape[1], a.nnz, |
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alpha.data, a._descr.descriptor, a.data.data.ptr, |
|
|
a.indptr.data.ptr, a.indices.data.ptr, |
|
|
b.data.ptr, ldb, beta.data, c.data.ptr, ldc) |
|
|
return c |
|
|
|
|
|
|
|
|
def csrgeam(a, b, alpha=1, beta=1): |
|
|
"""Matrix-matrix addition. |
|
|
|
|
|
.. math:: |
|
|
C = \\alpha A + \\beta B |
|
|
|
|
|
Args: |
|
|
a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A. |
|
|
b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B. |
|
|
alpha (float): Coefficient for A. |
|
|
beta (float): Coefficient for B. |
|
|
|
|
|
Returns: |
|
|
cupyx.scipy.sparse.csr_matrix: Result matrix. |
|
|
|
|
|
""" |
|
|
if not check_availability('csrgeam'): |
|
|
raise RuntimeError('csrgeam is not available.') |
|
|
|
|
|
if not isinstance(a, cupyx.scipy.sparse.csr_matrix): |
|
|
raise TypeError('unsupported type (actual: {})'.format(type(a))) |
|
|
if not isinstance(b, cupyx.scipy.sparse.csr_matrix): |
|
|
raise TypeError('unsupported type (actual: {})'.format(type(b))) |
|
|
assert a.has_canonical_format |
|
|
assert b.has_canonical_format |
|
|
if a.shape != b.shape: |
|
|
raise ValueError('inconsistent shapes') |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
m, n = a.shape |
|
|
a, b = _cast_common_type(a, b) |
|
|
nnz = _numpy.empty((), 'i') |
|
|
_cusparse.setPointerMode( |
|
|
handle, _cusparse.CUSPARSE_POINTER_MODE_HOST) |
|
|
|
|
|
c_descr = MatDescriptor.create() |
|
|
c_indptr = _cupy.empty(m + 1, 'i') |
|
|
|
|
|
_cusparse.xcsrgeamNnz( |
|
|
handle, m, n, |
|
|
a._descr.descriptor, a.nnz, a.indptr.data.ptr, a.indices.data.ptr, |
|
|
b._descr.descriptor, b.nnz, b.indptr.data.ptr, b.indices.data.ptr, |
|
|
c_descr.descriptor, c_indptr.data.ptr, nnz.ctypes.data) |
|
|
|
|
|
c_indices = _cupy.empty(int(nnz), 'i') |
|
|
c_data = _cupy.empty(int(nnz), a.dtype) |
|
|
alpha = _numpy.array(alpha, a.dtype).ctypes |
|
|
beta = _numpy.array(beta, a.dtype).ctypes |
|
|
_call_cusparse( |
|
|
'csrgeam', a.dtype, |
|
|
handle, m, n, alpha.data, |
|
|
a._descr.descriptor, a.nnz, a.data.data.ptr, |
|
|
a.indptr.data.ptr, a.indices.data.ptr, beta.data, |
|
|
b._descr.descriptor, b.nnz, b.data.data.ptr, |
|
|
b.indptr.data.ptr, b.indices.data.ptr, |
|
|
c_descr.descriptor, c_data.data.ptr, c_indptr.data.ptr, |
|
|
c_indices.data.ptr) |
|
|
|
|
|
c = cupyx.scipy.sparse.csr_matrix( |
|
|
(c_data, c_indices, c_indptr), shape=a.shape) |
|
|
c._has_canonical_format = True |
|
|
return c |
|
|
|
|
|
|
|
|
def csrgeam2(a, b, alpha=1, beta=1): |
|
|
"""Matrix-matrix addition. |
|
|
|
|
|
.. math:: |
|
|
C = \\alpha A + \\beta B |
|
|
|
|
|
Args: |
|
|
a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A. |
|
|
b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B. |
|
|
alpha (float): Coefficient for A. |
|
|
beta (float): Coefficient for B. |
|
|
|
|
|
Returns: |
|
|
cupyx.scipy.sparse.csr_matrix: Result matrix. |
|
|
|
|
|
""" |
|
|
if not check_availability('csrgeam2'): |
|
|
raise RuntimeError('csrgeam2 is not available.') |
|
|
|
|
|
if not isinstance(a, cupyx.scipy.sparse.csr_matrix): |
|
|
raise TypeError('unsupported type (actual: {})'.format(type(a))) |
|
|
if not isinstance(b, cupyx.scipy.sparse.csr_matrix): |
|
|
raise TypeError('unsupported type (actual: {})'.format(type(b))) |
|
|
assert a.has_canonical_format |
|
|
assert b.has_canonical_format |
|
|
if a.shape != b.shape: |
|
|
raise ValueError('inconsistent shapes') |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
m, n = a.shape |
|
|
a, b = _cast_common_type(a, b) |
|
|
nnz = _numpy.empty((), 'i') |
|
|
_cusparse.setPointerMode( |
|
|
handle, _cusparse.CUSPARSE_POINTER_MODE_HOST) |
|
|
|
|
|
alpha = _numpy.array(alpha, a.dtype).ctypes |
|
|
beta = _numpy.array(beta, a.dtype).ctypes |
|
|
c_descr = MatDescriptor.create() |
|
|
c_indptr = _cupy.empty(m + 1, 'i') |
|
|
|
|
|
null_ptr = 0 |
|
|
buff_size = _call_cusparse( |
|
|
'csrgeam2_bufferSizeExt', a.dtype, |
|
|
handle, m, n, alpha.data, a._descr.descriptor, a.nnz, a.data.data.ptr, |
|
|
a.indptr.data.ptr, a.indices.data.ptr, beta.data, b._descr.descriptor, |
|
|
b.nnz, b.data.data.ptr, b.indptr.data.ptr, b.indices.data.ptr, |
|
|
c_descr.descriptor, null_ptr, c_indptr.data.ptr, null_ptr) |
|
|
buff = _cupy.empty(buff_size, _numpy.int8) |
|
|
_cusparse.xcsrgeam2Nnz( |
|
|
handle, m, n, a._descr.descriptor, a.nnz, a.indptr.data.ptr, |
|
|
a.indices.data.ptr, b._descr.descriptor, b.nnz, b.indptr.data.ptr, |
|
|
b.indices.data.ptr, c_descr.descriptor, c_indptr.data.ptr, |
|
|
nnz.ctypes.data, buff.data.ptr) |
|
|
c_indices = _cupy.empty(int(nnz), 'i') |
|
|
c_data = _cupy.empty(int(nnz), a.dtype) |
|
|
_call_cusparse( |
|
|
'csrgeam2', a.dtype, |
|
|
handle, m, n, alpha.data, a._descr.descriptor, a.nnz, a.data.data.ptr, |
|
|
a.indptr.data.ptr, a.indices.data.ptr, beta.data, b._descr.descriptor, |
|
|
b.nnz, b.data.data.ptr, b.indptr.data.ptr, b.indices.data.ptr, |
|
|
c_descr.descriptor, c_data.data.ptr, c_indptr.data.ptr, |
|
|
c_indices.data.ptr, buff.data.ptr) |
|
|
|
|
|
c = cupyx.scipy.sparse.csr_matrix( |
|
|
(c_data, c_indices, c_indptr), shape=a.shape) |
|
|
c._has_canonical_format = True |
|
|
return c |
|
|
|
|
|
|
|
|
def csrgemm(a, b, transa=False, transb=False): |
|
|
"""Matrix-matrix product for CSR-matrix. |
|
|
|
|
|
math:: |
|
|
C = op(A) op(B), |
|
|
|
|
|
Args: |
|
|
a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A. |
|
|
b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B. |
|
|
transa (bool): If ``True``, transpose of A is used. |
|
|
transb (bool): If ``True``, transpose of B is used. |
|
|
|
|
|
Returns: |
|
|
cupyx.scipy.sparse.csr_matrix: Calculated C. |
|
|
|
|
|
""" |
|
|
if not check_availability('csrgemm'): |
|
|
raise RuntimeError('csrgemm is not available.') |
|
|
|
|
|
assert a.ndim == b.ndim == 2 |
|
|
assert a.has_canonical_format |
|
|
assert b.has_canonical_format |
|
|
a_shape = a.shape if not transa else a.shape[::-1] |
|
|
b_shape = b.shape if not transb else b.shape[::-1] |
|
|
if a_shape[1] != b_shape[0]: |
|
|
raise ValueError('dimension mismatch') |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
m, k = a_shape |
|
|
n = b_shape[1] |
|
|
|
|
|
a, b = _cast_common_type(a, b) |
|
|
|
|
|
if a.nnz == 0 or b.nnz == 0: |
|
|
return cupyx.scipy.sparse.csr_matrix((m, n), dtype=a.dtype) |
|
|
|
|
|
op_a = _transpose_flag(transa) |
|
|
op_b = _transpose_flag(transb) |
|
|
|
|
|
nnz = _numpy.empty((), 'i') |
|
|
_cusparse.setPointerMode( |
|
|
handle, _cusparse.CUSPARSE_POINTER_MODE_HOST) |
|
|
|
|
|
c_descr = MatDescriptor.create() |
|
|
c_indptr = _cupy.empty(m + 1, 'i') |
|
|
|
|
|
_cusparse.xcsrgemmNnz( |
|
|
handle, op_a, op_b, m, n, k, a._descr.descriptor, a.nnz, |
|
|
a.indptr.data.ptr, a.indices.data.ptr, b._descr.descriptor, b.nnz, |
|
|
b.indptr.data.ptr, b.indices.data.ptr, c_descr.descriptor, |
|
|
c_indptr.data.ptr, nnz.ctypes.data) |
|
|
|
|
|
c_indices = _cupy.empty(int(nnz), 'i') |
|
|
c_data = _cupy.empty(int(nnz), a.dtype) |
|
|
_call_cusparse( |
|
|
'csrgemm', a.dtype, |
|
|
handle, op_a, op_b, m, n, k, a._descr.descriptor, a.nnz, |
|
|
a.data.data.ptr, a.indptr.data.ptr, a.indices.data.ptr, |
|
|
b._descr.descriptor, b.nnz, b.data.data.ptr, b.indptr.data.ptr, |
|
|
b.indices.data.ptr, |
|
|
c_descr.descriptor, c_data.data.ptr, c_indptr.data.ptr, |
|
|
c_indices.data.ptr) |
|
|
|
|
|
c = cupyx.scipy.sparse.csr_matrix( |
|
|
(c_data, c_indices, c_indptr), shape=(m, n)) |
|
|
c._has_canonical_format = True |
|
|
return c |
|
|
|
|
|
|
|
|
def csrgemm2(a, b, d=None, alpha=1, beta=1): |
|
|
"""Matrix-matrix product for CSR-matrix. |
|
|
|
|
|
math:: |
|
|
C = alpha * A * B + beta * D |
|
|
|
|
|
Args: |
|
|
a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A. |
|
|
b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B. |
|
|
d (cupyx.scipy.sparse.csr_matrix or None): Sparse matrix D. |
|
|
alpha (scalar): Coefficient |
|
|
beta (scalar): Coefficient |
|
|
|
|
|
Returns: |
|
|
cupyx.scipy.sparse.csr_matrix |
|
|
|
|
|
""" |
|
|
if not check_availability('csrgemm2'): |
|
|
raise RuntimeError('csrgemm2 is not available.') |
|
|
|
|
|
assert a.ndim == b.ndim == 2 |
|
|
if not isinstance(a, cupyx.scipy.sparse.csr_matrix): |
|
|
raise TypeError('unsupported type (actual: {})'.format(type(a))) |
|
|
if not isinstance(b, cupyx.scipy.sparse.csr_matrix): |
|
|
raise TypeError('unsupported type (actual: {})'.format(type(b))) |
|
|
assert a.has_canonical_format |
|
|
assert b.has_canonical_format |
|
|
if a.shape[1] != b.shape[0]: |
|
|
raise ValueError('mismatched shape') |
|
|
if d is not None: |
|
|
assert d.ndim == 2 |
|
|
if not isinstance(d, cupyx.scipy.sparse.csr_matrix): |
|
|
raise TypeError('unsupported type (actual: {})'.format(type(d))) |
|
|
assert d.has_canonical_format |
|
|
if a.shape[0] != d.shape[0] or b.shape[1] != d.shape[1]: |
|
|
raise ValueError('mismatched shape') |
|
|
if _runtime.is_hip and _driver.get_build_version() < 402: |
|
|
raise RuntimeError('d != None is supported since ROCm 4.2.0') |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
m, k = a.shape |
|
|
_, n = b.shape |
|
|
|
|
|
if d is None: |
|
|
a, b = _cast_common_type(a, b) |
|
|
else: |
|
|
a, b, d = _cast_common_type(a, b, d) |
|
|
|
|
|
info = _cusparse.createCsrgemm2Info() |
|
|
alpha = _numpy.array(alpha, a.dtype).ctypes |
|
|
null_ptr = 0 |
|
|
if d is None: |
|
|
beta_data = null_ptr |
|
|
d_descr = MatDescriptor.create() |
|
|
d_nnz = 0 |
|
|
d_data = null_ptr |
|
|
d_indptr = null_ptr |
|
|
d_indices = null_ptr |
|
|
else: |
|
|
beta = _numpy.array(beta, a.dtype).ctypes |
|
|
beta_data = beta.data |
|
|
d_descr = d._descr |
|
|
d_nnz = d.nnz |
|
|
d_data = d.data.data.ptr |
|
|
d_indptr = d.indptr.data.ptr |
|
|
d_indices = d.indices.data.ptr |
|
|
|
|
|
buff_size = _call_cusparse( |
|
|
'csrgemm2_bufferSizeExt', a.dtype, |
|
|
handle, m, n, k, alpha.data, a._descr.descriptor, a.nnz, |
|
|
a.indptr.data.ptr, a.indices.data.ptr, b._descr.descriptor, b.nnz, |
|
|
b.indptr.data.ptr, b.indices.data.ptr, beta_data, d_descr.descriptor, |
|
|
d_nnz, d_indptr, d_indices, info) |
|
|
buff = _cupy.empty(buff_size, _numpy.int8) |
|
|
|
|
|
c_nnz = _numpy.empty((), 'i') |
|
|
_cusparse.setPointerMode(handle, _cusparse.CUSPARSE_POINTER_MODE_HOST) |
|
|
|
|
|
c_descr = MatDescriptor.create() |
|
|
c_indptr = _cupy.empty(m + 1, 'i') |
|
|
_cusparse.xcsrgemm2Nnz( |
|
|
handle, m, n, k, a._descr.descriptor, a.nnz, a.indptr.data.ptr, |
|
|
a.indices.data.ptr, b._descr.descriptor, b.nnz, b.indptr.data.ptr, |
|
|
b.indices.data.ptr, d_descr.descriptor, d_nnz, d_indptr, d_indices, |
|
|
c_descr.descriptor, c_indptr.data.ptr, c_nnz.ctypes.data, info, |
|
|
buff.data.ptr) |
|
|
|
|
|
c_indices = _cupy.empty(int(c_nnz), 'i') |
|
|
c_data = _cupy.empty(int(c_nnz), a.dtype) |
|
|
_call_cusparse( |
|
|
'csrgemm2', a.dtype, |
|
|
handle, m, n, k, alpha.data, a._descr.descriptor, a.nnz, |
|
|
a.data.data.ptr, a.indptr.data.ptr, a.indices.data.ptr, |
|
|
b._descr.descriptor, b.nnz, b.data.data.ptr, b.indptr.data.ptr, |
|
|
b.indices.data.ptr, beta_data, d_descr.descriptor, d_nnz, d_data, |
|
|
d_indptr, d_indices, c_descr.descriptor, c_data.data.ptr, |
|
|
c_indptr.data.ptr, c_indices.data.ptr, info, buff.data.ptr) |
|
|
|
|
|
c = cupyx.scipy.sparse.csr_matrix( |
|
|
(c_data, c_indices, c_indptr), shape=(m, n)) |
|
|
c._has_canonical_format = True |
|
|
_cusparse.destroyCsrgemm2Info(info) |
|
|
return c |
|
|
|
|
|
|
|
|
def csr2dense(x, out=None): |
|
|
"""Converts CSR-matrix to a dense matrix. |
|
|
|
|
|
Args: |
|
|
x (cupyx.scipy.sparse.csr_matrix): A sparse matrix to convert. |
|
|
out (cupy.ndarray or None): A dense metrix to store the result. |
|
|
It must be F-contiguous. |
|
|
|
|
|
Returns: |
|
|
cupy.ndarray: Converted result. |
|
|
|
|
|
""" |
|
|
if not check_availability('csr2dense'): |
|
|
raise RuntimeError('csr2dense is not available.') |
|
|
|
|
|
dtype = x.dtype |
|
|
assert dtype.char in 'fdFD' |
|
|
if out is None: |
|
|
out = _cupy.empty(x.shape, dtype=dtype, order='F') |
|
|
else: |
|
|
assert out.flags.f_contiguous |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
_call_cusparse( |
|
|
'csr2dense', x.dtype, |
|
|
handle, x.shape[0], x.shape[1], x._descr.descriptor, |
|
|
x.data.data.ptr, x.indptr.data.ptr, x.indices.data.ptr, |
|
|
out.data.ptr, x.shape[0]) |
|
|
|
|
|
return out |
|
|
|
|
|
|
|
|
def csc2dense(x, out=None): |
|
|
"""Converts CSC-matrix to a dense matrix. |
|
|
|
|
|
Args: |
|
|
x (cupyx.scipy.sparse.csc_matrix): A sparse matrix to convert. |
|
|
out (cupy.ndarray or None): A dense metrix to store the result. |
|
|
It must be F-contiguous. |
|
|
|
|
|
Returns: |
|
|
cupy.ndarray: Converted result. |
|
|
|
|
|
""" |
|
|
if not check_availability('csc2dense'): |
|
|
raise RuntimeError('csc2dense is not available.') |
|
|
|
|
|
dtype = x.dtype |
|
|
assert dtype.char in 'fdFD' |
|
|
if out is None: |
|
|
out = _cupy.empty(x.shape, dtype=dtype, order='F') |
|
|
else: |
|
|
assert out.flags.f_contiguous |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
_call_cusparse( |
|
|
'csc2dense', x.dtype, |
|
|
handle, x.shape[0], x.shape[1], x._descr.descriptor, |
|
|
x.data.data.ptr, x.indices.data.ptr, x.indptr.data.ptr, |
|
|
out.data.ptr, x.shape[0]) |
|
|
|
|
|
return out |
|
|
|
|
|
|
|
|
def csrsort(x): |
|
|
"""Sorts indices of CSR-matrix in place. |
|
|
|
|
|
Args: |
|
|
x (cupyx.scipy.sparse.csr_matrix): A sparse matrix to sort. |
|
|
|
|
|
""" |
|
|
if not check_availability('csrsort'): |
|
|
raise RuntimeError('csrsort is not available.') |
|
|
|
|
|
nnz = x.nnz |
|
|
if nnz == 0: |
|
|
return |
|
|
handle = _device.get_cusparse_handle() |
|
|
m, n = x.shape |
|
|
|
|
|
buffer_size = _cusparse.xcsrsort_bufferSizeExt( |
|
|
handle, m, n, nnz, x.indptr.data.ptr, |
|
|
x.indices.data.ptr) |
|
|
buf = _cupy.empty(buffer_size, 'b') |
|
|
P = _cupy.empty(nnz, 'i') |
|
|
data_orig = x.data.copy() |
|
|
_cusparse.createIdentityPermutation(handle, nnz, P.data.ptr) |
|
|
_cusparse.xcsrsort( |
|
|
handle, m, n, nnz, x._descr.descriptor, x.indptr.data.ptr, |
|
|
x.indices.data.ptr, P.data.ptr, buf.data.ptr) |
|
|
|
|
|
if check_availability('gthr'): |
|
|
_call_cusparse( |
|
|
'gthr', x.dtype, |
|
|
handle, nnz, data_orig.data.ptr, x.data.data.ptr, |
|
|
P.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO) |
|
|
else: |
|
|
desc_x = SpVecDescriptor.create(P, x.data) |
|
|
desc_y = DnVecDescriptor.create(data_orig) |
|
|
_cusparse.gather(handle, desc_y.desc, desc_x.desc) |
|
|
|
|
|
|
|
|
def cscsort(x): |
|
|
"""Sorts indices of CSC-matrix in place. |
|
|
|
|
|
Args: |
|
|
x (cupyx.scipy.sparse.csc_matrix): A sparse matrix to sort. |
|
|
|
|
|
""" |
|
|
if not check_availability('cscsort'): |
|
|
raise RuntimeError('cscsort is not available.') |
|
|
|
|
|
nnz = x.nnz |
|
|
if nnz == 0: |
|
|
return |
|
|
handle = _device.get_cusparse_handle() |
|
|
m, n = x.shape |
|
|
|
|
|
buffer_size = _cusparse.xcscsort_bufferSizeExt( |
|
|
handle, m, n, nnz, x.indptr.data.ptr, |
|
|
x.indices.data.ptr) |
|
|
buf = _cupy.empty(buffer_size, 'b') |
|
|
P = _cupy.empty(nnz, 'i') |
|
|
data_orig = x.data.copy() |
|
|
_cusparse.createIdentityPermutation(handle, nnz, P.data.ptr) |
|
|
_cusparse.xcscsort( |
|
|
handle, m, n, nnz, x._descr.descriptor, x.indptr.data.ptr, |
|
|
x.indices.data.ptr, P.data.ptr, buf.data.ptr) |
|
|
|
|
|
if check_availability('gthr'): |
|
|
_call_cusparse( |
|
|
'gthr', x.dtype, |
|
|
handle, nnz, data_orig.data.ptr, x.data.data.ptr, |
|
|
P.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO) |
|
|
else: |
|
|
desc_x = SpVecDescriptor.create(P, x.data) |
|
|
desc_y = DnVecDescriptor.create(data_orig) |
|
|
_cusparse.gather(handle, desc_y.desc, desc_x.desc) |
|
|
|
|
|
|
|
|
def coosort(x, sort_by='r'): |
|
|
"""Sorts indices of COO-matrix in place. |
|
|
|
|
|
Args: |
|
|
x (cupyx.scipy.sparse.coo_matrix): A sparse matrix to sort. |
|
|
sort_by (str): Sort the indices by row ('r', default) or column ('c'). |
|
|
|
|
|
""" |
|
|
if not check_availability('coosort'): |
|
|
raise RuntimeError('coosort is not available.') |
|
|
|
|
|
nnz = x.nnz |
|
|
if nnz == 0: |
|
|
return |
|
|
handle = _device.get_cusparse_handle() |
|
|
m, n = x.shape |
|
|
|
|
|
buffer_size = _cusparse.xcoosort_bufferSizeExt( |
|
|
handle, m, n, nnz, x.row.data.ptr, x.col.data.ptr) |
|
|
buf = _cupy.empty(buffer_size, 'b') |
|
|
P = _cupy.empty(nnz, 'i') |
|
|
data_orig = x.data.copy() |
|
|
_cusparse.createIdentityPermutation(handle, nnz, P.data.ptr) |
|
|
if sort_by == 'r': |
|
|
_cusparse.xcoosortByRow( |
|
|
handle, m, n, nnz, x.row.data.ptr, x.col.data.ptr, |
|
|
P.data.ptr, buf.data.ptr) |
|
|
elif sort_by == 'c': |
|
|
_cusparse.xcoosortByColumn( |
|
|
handle, m, n, nnz, x.row.data.ptr, x.col.data.ptr, |
|
|
P.data.ptr, buf.data.ptr) |
|
|
else: |
|
|
raise ValueError("sort_by must be either 'r' or 'c'") |
|
|
|
|
|
if x.dtype.char != '?': |
|
|
if check_availability('gthr'): |
|
|
_call_cusparse( |
|
|
'gthr', x.dtype, |
|
|
handle, nnz, data_orig.data.ptr, x.data.data.ptr, |
|
|
P.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO) |
|
|
else: |
|
|
desc_x = SpVecDescriptor.create(P, x.data) |
|
|
desc_y = DnVecDescriptor.create(data_orig) |
|
|
_cusparse.gather(handle, desc_y.desc, desc_x.desc) |
|
|
|
|
|
if sort_by == 'c': |
|
|
x._has_canonical_format = False |
|
|
|
|
|
|
|
|
def coo2csr(x): |
|
|
handle = _device.get_cusparse_handle() |
|
|
m = x.shape[0] |
|
|
nnz = x.nnz |
|
|
if nnz == 0: |
|
|
indptr = _cupy.zeros(m + 1, 'i') |
|
|
else: |
|
|
indptr = _cupy.empty(m + 1, 'i') |
|
|
_cusparse.xcoo2csr( |
|
|
handle, x.row.data.ptr, nnz, m, |
|
|
indptr.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO) |
|
|
return cupyx.scipy.sparse.csr_matrix( |
|
|
(x.data, x.col, indptr), shape=x.shape) |
|
|
|
|
|
|
|
|
def coo2csc(x): |
|
|
handle = _device.get_cusparse_handle() |
|
|
n = x.shape[1] |
|
|
nnz = x.nnz |
|
|
if nnz == 0: |
|
|
indptr = _cupy.zeros(n + 1, 'i') |
|
|
else: |
|
|
indptr = _cupy.empty(n + 1, 'i') |
|
|
_cusparse.xcoo2csr( |
|
|
handle, x.col.data.ptr, nnz, n, |
|
|
indptr.data.ptr, _cusparse.CUSPARSE_INDEX_BASE_ZERO) |
|
|
return cupyx.scipy.sparse.csc_matrix( |
|
|
(x.data, x.row, indptr), shape=x.shape) |
|
|
|
|
|
|
|
|
def csr2coo(x, data, indices): |
|
|
"""Converts a CSR-matrix to COO format. |
|
|
|
|
|
Args: |
|
|
x (cupyx.scipy.sparse.csr_matrix): A matrix to be converted. |
|
|
data (cupy.ndarray): A data array for converted data. |
|
|
indices (cupy.ndarray): An index array for converted data. |
|
|
|
|
|
Returns: |
|
|
cupyx.scipy.sparse.coo_matrix: A converted matrix. |
|
|
|
|
|
""" |
|
|
if not check_availability('csr2coo'): |
|
|
raise RuntimeError('csr2coo is not available.') |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
m = x.shape[0] |
|
|
nnz = x.nnz |
|
|
row = _cupy.empty(nnz, 'i') |
|
|
_cusparse.xcsr2coo( |
|
|
handle, x.indptr.data.ptr, nnz, m, row.data.ptr, |
|
|
_cusparse.CUSPARSE_INDEX_BASE_ZERO) |
|
|
|
|
|
return cupyx.scipy.sparse.coo_matrix( |
|
|
(data, (row, indices)), shape=x.shape) |
|
|
|
|
|
|
|
|
def csr2csc(x): |
|
|
if not check_availability('csr2csc'): |
|
|
raise RuntimeError('csr2csc is not available.') |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
m, n = x.shape |
|
|
nnz = x.nnz |
|
|
data = _cupy.empty(nnz, x.dtype) |
|
|
indices = _cupy.empty(nnz, 'i') |
|
|
if nnz == 0: |
|
|
indptr = _cupy.zeros(n + 1, 'i') |
|
|
else: |
|
|
indptr = _cupy.empty(n + 1, 'i') |
|
|
_call_cusparse( |
|
|
'csr2csc', x.dtype, |
|
|
handle, m, n, nnz, x.data.data.ptr, |
|
|
x.indptr.data.ptr, x.indices.data.ptr, |
|
|
data.data.ptr, indices.data.ptr, indptr.data.ptr, |
|
|
_cusparse.CUSPARSE_ACTION_NUMERIC, |
|
|
_cusparse.CUSPARSE_INDEX_BASE_ZERO) |
|
|
return cupyx.scipy.sparse.csc_matrix( |
|
|
(data, indices, indptr), shape=x.shape) |
|
|
|
|
|
|
|
|
def csr2cscEx2(x): |
|
|
if not check_availability('csr2cscEx2'): |
|
|
raise RuntimeError('csr2cscEx2 is not available.') |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
m, n = x.shape |
|
|
nnz = x.nnz |
|
|
data = _cupy.empty(nnz, x.dtype) |
|
|
indices = _cupy.empty(nnz, 'i') |
|
|
if nnz == 0: |
|
|
indptr = _cupy.zeros(n + 1, 'i') |
|
|
else: |
|
|
indptr = _cupy.empty(n + 1, 'i') |
|
|
x_dtype = _dtype.to_cuda_dtype(x.dtype) |
|
|
action = _cusparse.CUSPARSE_ACTION_NUMERIC |
|
|
ibase = _cusparse.CUSPARSE_INDEX_BASE_ZERO |
|
|
algo = _cusparse.CUSPARSE_CSR2CSC_ALG1 |
|
|
buffer_size = _cusparse.csr2cscEx2_bufferSize( |
|
|
handle, m, n, nnz, x.data.data.ptr, x.indptr.data.ptr, |
|
|
x.indices.data.ptr, data.data.ptr, indptr.data.ptr, |
|
|
indices.data.ptr, x_dtype, action, ibase, algo) |
|
|
buffer = _cupy.empty(buffer_size, _numpy.int8) |
|
|
_cusparse.csr2cscEx2( |
|
|
handle, m, n, nnz, x.data.data.ptr, x.indptr.data.ptr, |
|
|
x.indices.data.ptr, data.data.ptr, indptr.data.ptr, |
|
|
indices.data.ptr, x_dtype, action, ibase, algo, buffer.data.ptr) |
|
|
return cupyx.scipy.sparse.csc_matrix( |
|
|
(data, indices, indptr), shape=x.shape) |
|
|
|
|
|
|
|
|
def csc2coo(x, data, indices): |
|
|
"""Converts a CSC-matrix to COO format. |
|
|
|
|
|
Args: |
|
|
x (cupyx.scipy.sparse.csc_matrix): A matrix to be converted. |
|
|
data (cupy.ndarray): A data array for converted data. |
|
|
indices (cupy.ndarray): An index array for converted data. |
|
|
|
|
|
Returns: |
|
|
cupyx.scipy.sparse.coo_matrix: A converted matrix. |
|
|
|
|
|
""" |
|
|
handle = _device.get_cusparse_handle() |
|
|
n = x.shape[1] |
|
|
nnz = x.nnz |
|
|
col = _cupy.empty(nnz, 'i') |
|
|
_cusparse.xcsr2coo( |
|
|
handle, x.indptr.data.ptr, nnz, n, col.data.ptr, |
|
|
_cusparse.CUSPARSE_INDEX_BASE_ZERO) |
|
|
|
|
|
return cupyx.scipy.sparse.coo_matrix( |
|
|
(data, (indices, col)), shape=x.shape) |
|
|
|
|
|
|
|
|
def csc2csr(x): |
|
|
if not check_availability('csc2csr'): |
|
|
raise RuntimeError('csr2csc is not available.') |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
m, n = x.shape |
|
|
nnz = x.nnz |
|
|
data = _cupy.empty(nnz, x.dtype) |
|
|
indices = _cupy.empty(nnz, 'i') |
|
|
if nnz == 0: |
|
|
indptr = _cupy.zeros(m + 1, 'i') |
|
|
else: |
|
|
indptr = _cupy.empty(m + 1, 'i') |
|
|
_call_cusparse( |
|
|
'csr2csc', x.dtype, |
|
|
handle, n, m, nnz, x.data.data.ptr, |
|
|
x.indptr.data.ptr, x.indices.data.ptr, |
|
|
data.data.ptr, indices.data.ptr, indptr.data.ptr, |
|
|
_cusparse.CUSPARSE_ACTION_NUMERIC, |
|
|
_cusparse.CUSPARSE_INDEX_BASE_ZERO) |
|
|
return cupyx.scipy.sparse.csr_matrix( |
|
|
(data, indices, indptr), shape=x.shape) |
|
|
|
|
|
|
|
|
def csc2csrEx2(x): |
|
|
if not check_availability('csc2csrEx2'): |
|
|
raise RuntimeError('csc2csrEx2 is not available.') |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
m, n = x.shape |
|
|
nnz = x.nnz |
|
|
data = _cupy.empty(nnz, x.dtype) |
|
|
indices = _cupy.empty(nnz, 'i') |
|
|
if nnz == 0: |
|
|
indptr = _cupy.zeros(m + 1, 'i') |
|
|
else: |
|
|
indptr = _cupy.empty(m + 1, 'i') |
|
|
x_dtype = _dtype.to_cuda_dtype(x.dtype) |
|
|
action = _cusparse.CUSPARSE_ACTION_NUMERIC |
|
|
ibase = _cusparse.CUSPARSE_INDEX_BASE_ZERO |
|
|
algo = _cusparse.CUSPARSE_CSR2CSC_ALG1 |
|
|
buffer_size = _cusparse.csr2cscEx2_bufferSize( |
|
|
handle, n, m, nnz, x.data.data.ptr, x.indptr.data.ptr, |
|
|
x.indices.data.ptr, data.data.ptr, indptr.data.ptr, |
|
|
indices.data.ptr, x_dtype, action, ibase, algo) |
|
|
buffer = _cupy.empty(buffer_size, _numpy.int8) |
|
|
_cusparse.csr2cscEx2( |
|
|
handle, n, m, nnz, x.data.data.ptr, x.indptr.data.ptr, |
|
|
x.indices.data.ptr, data.data.ptr, indptr.data.ptr, |
|
|
indices.data.ptr, x_dtype, action, ibase, algo, buffer.data.ptr) |
|
|
return cupyx.scipy.sparse.csr_matrix( |
|
|
(data, indices, indptr), shape=x.shape) |
|
|
|
|
|
|
|
|
def dense2csc(x): |
|
|
"""Converts a dense matrix in CSC format. |
|
|
|
|
|
Args: |
|
|
x (cupy.ndarray): A matrix to be converted. |
|
|
|
|
|
Returns: |
|
|
cupyx.scipy.sparse.csc_matrix: A converted matrix. |
|
|
|
|
|
""" |
|
|
if not check_availability('dense2csc'): |
|
|
raise RuntimeError('dense2csc is not available.') |
|
|
|
|
|
assert x.ndim == 2 |
|
|
x = _cupy.asfortranarray(x) |
|
|
nnz = _numpy.empty((), dtype='i') |
|
|
handle = _device.get_cusparse_handle() |
|
|
m, n = x.shape |
|
|
|
|
|
descr = MatDescriptor.create() |
|
|
nnz_per_col = _cupy.empty(m, 'i') |
|
|
_call_cusparse( |
|
|
'nnz', x.dtype, |
|
|
handle, _cusparse.CUSPARSE_DIRECTION_COLUMN, m, n, descr.descriptor, |
|
|
x.data.ptr, m, nnz_per_col.data.ptr, nnz.ctypes.data) |
|
|
|
|
|
nnz = int(nnz) |
|
|
data = _cupy.empty(nnz, x.dtype) |
|
|
indptr = _cupy.empty(n + 1, 'i') |
|
|
indices = _cupy.empty(nnz, 'i') |
|
|
|
|
|
_call_cusparse( |
|
|
'dense2csc', x.dtype, |
|
|
handle, m, n, descr.descriptor, |
|
|
x.data.ptr, m, nnz_per_col.data.ptr, |
|
|
data.data.ptr, indices.data.ptr, indptr.data.ptr) |
|
|
|
|
|
csc = cupyx.scipy.sparse.csc_matrix((data, indices, indptr), shape=x.shape) |
|
|
csc._has_canonical_format = True |
|
|
return csc |
|
|
|
|
|
|
|
|
def dense2csr(x): |
|
|
"""Converts a dense matrix in CSR format. |
|
|
|
|
|
Args: |
|
|
x (cupy.ndarray): A matrix to be converted. |
|
|
|
|
|
Returns: |
|
|
cupyx.scipy.sparse.csr_matrix: A converted matrix. |
|
|
|
|
|
""" |
|
|
if not check_availability('dense2csr'): |
|
|
raise RuntimeError('dense2csr is not available.') |
|
|
|
|
|
assert x.ndim == 2 |
|
|
x = _cupy.asfortranarray(x) |
|
|
nnz = _numpy.empty((), dtype='i') |
|
|
handle = _device.get_cusparse_handle() |
|
|
m, n = x.shape |
|
|
|
|
|
descr = MatDescriptor.create() |
|
|
nnz_per_row = _cupy.empty(m, 'i') |
|
|
_call_cusparse( |
|
|
'nnz', x.dtype, |
|
|
handle, _cusparse.CUSPARSE_DIRECTION_ROW, m, n, descr.descriptor, |
|
|
x.data.ptr, m, nnz_per_row.data.ptr, nnz.ctypes.data) |
|
|
|
|
|
nnz = int(nnz) |
|
|
if _runtime.is_hip: |
|
|
if nnz == 0: |
|
|
raise ValueError('hipSPARSE currently cannot handle ' |
|
|
'sparse matrices with null ptrs') |
|
|
data = _cupy.empty(nnz, x.dtype) |
|
|
indptr = _cupy.empty(m + 1, 'i') |
|
|
indices = _cupy.empty(nnz, 'i') |
|
|
|
|
|
_call_cusparse( |
|
|
'dense2csr', x.dtype, |
|
|
handle, m, n, descr.descriptor, |
|
|
x.data.ptr, m, nnz_per_row.data.ptr, |
|
|
data.data.ptr, indptr.data.ptr, indices.data.ptr) |
|
|
|
|
|
csr = cupyx.scipy.sparse.csr_matrix((data, indices, indptr), shape=x.shape) |
|
|
csr._has_canonical_format = True |
|
|
return csr |
|
|
|
|
|
|
|
|
def csr2csr_compress(x, tol): |
|
|
if not check_availability('csr2csr_compress'): |
|
|
raise RuntimeError('csr2csr_compress is not available.') |
|
|
|
|
|
assert x.dtype.char in 'fdFD' |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
m, n = x.shape |
|
|
|
|
|
nnz_per_row = _cupy.empty(m, 'i') |
|
|
nnz = _call_cusparse( |
|
|
'nnz_compress', x.dtype, |
|
|
handle, m, x._descr.descriptor, |
|
|
x.data.data.ptr, x.indptr.data.ptr, nnz_per_row.data.ptr, tol) |
|
|
data = _cupy.zeros(nnz, x.dtype) |
|
|
indptr = _cupy.empty(m + 1, 'i') |
|
|
indices = _cupy.zeros(nnz, 'i') |
|
|
_call_cusparse( |
|
|
'csr2csr_compress', x.dtype, |
|
|
handle, m, n, x._descr.descriptor, |
|
|
x.data.data.ptr, x.indices.data.ptr, x.indptr.data.ptr, |
|
|
x.nnz, nnz_per_row.data.ptr, data.data.ptr, indices.data.ptr, |
|
|
indptr.data.ptr, tol) |
|
|
|
|
|
return cupyx.scipy.sparse.csr_matrix( |
|
|
(data, indices, indptr), shape=x.shape) |
|
|
|
|
|
|
|
|
def _dtype_to_IndexType(dtype): |
|
|
if dtype == 'uint16': |
|
|
return _cusparse.CUSPARSE_INDEX_16U |
|
|
elif dtype == 'int32': |
|
|
return _cusparse.CUSPARSE_INDEX_32I |
|
|
elif dtype == 'int64': |
|
|
return _cusparse.CUSPARSE_INDEX_64I |
|
|
else: |
|
|
raise TypeError |
|
|
|
|
|
|
|
|
class BaseDescriptor(object): |
|
|
|
|
|
def __init__(self, descriptor, get=None, destroyer=None): |
|
|
self.desc = descriptor |
|
|
self.get = get |
|
|
self.destroy = destroyer |
|
|
|
|
|
def __del__(self, is_shutting_down=_util.is_shutting_down): |
|
|
if is_shutting_down(): |
|
|
return |
|
|
if self.destroy is None: |
|
|
self.desc = None |
|
|
elif self.desc is not None: |
|
|
self.destroy(self.desc) |
|
|
self.desc = None |
|
|
|
|
|
def __getattr__(self, name): |
|
|
if self.get is not None: |
|
|
return getattr(self.get(self.desc), name) |
|
|
raise AttributeError |
|
|
|
|
|
|
|
|
class SpMatDescriptor(BaseDescriptor): |
|
|
|
|
|
@classmethod |
|
|
def create(cls, a): |
|
|
assert cupyx.scipy.sparse.issparse(a) |
|
|
rows, cols = a.shape |
|
|
idx_base = _cusparse.CUSPARSE_INDEX_BASE_ZERO |
|
|
cuda_dtype = _dtype.to_cuda_dtype(a.dtype) |
|
|
if a.format == 'csr': |
|
|
desc = _cusparse.createCsr( |
|
|
rows, cols, a.nnz, a.indptr.data.ptr, a.indices.data.ptr, |
|
|
a.data.data.ptr, _dtype_to_IndexType(a.indptr.dtype), |
|
|
_dtype_to_IndexType(a.indices.dtype), idx_base, cuda_dtype) |
|
|
get = _cusparse.csrGet |
|
|
elif a.format == 'coo': |
|
|
desc = _cusparse.createCoo( |
|
|
rows, cols, a.nnz, a.row.data.ptr, a.col.data.ptr, |
|
|
a.data.data.ptr, _dtype_to_IndexType(a.row.dtype), |
|
|
idx_base, cuda_dtype) |
|
|
get = _cusparse.cooGet |
|
|
elif a.format == 'csc': |
|
|
desc = _cusparse.createCsc( |
|
|
rows, cols, a.nnz, a.indptr.data.ptr, a.indices.data.ptr, |
|
|
a.data.data.ptr, _dtype_to_IndexType(a.indptr.dtype), |
|
|
_dtype_to_IndexType(a.indices.dtype), idx_base, cuda_dtype) |
|
|
get = None |
|
|
else: |
|
|
raise ValueError('csr, csc and coo format are supported ' |
|
|
'(actual: {}).'.format(a.format)) |
|
|
destroy = _cusparse.destroySpMat |
|
|
return SpMatDescriptor(desc, get, destroy) |
|
|
|
|
|
def set_attribute(self, attribute, data): |
|
|
_cusparse.spMatSetAttribute(self.desc, attribute, data) |
|
|
|
|
|
|
|
|
class SpVecDescriptor(BaseDescriptor): |
|
|
|
|
|
@classmethod |
|
|
def create(cls, idx, x): |
|
|
nnz = x.size |
|
|
cuda_dtype = _dtype.to_cuda_dtype(x.dtype) |
|
|
desc = _cusparse.createSpVec(nnz, nnz, idx.data.ptr, x.data.ptr, |
|
|
_dtype_to_IndexType(idx.dtype), |
|
|
_cusparse.CUSPARSE_INDEX_BASE_ZERO, |
|
|
cuda_dtype) |
|
|
get = _cusparse.spVecGet |
|
|
destroy = _cusparse.destroySpVec |
|
|
return SpVecDescriptor(desc, get, destroy) |
|
|
|
|
|
|
|
|
class DnVecDescriptor(BaseDescriptor): |
|
|
|
|
|
@classmethod |
|
|
def create(cls, x): |
|
|
cuda_dtype = _dtype.to_cuda_dtype(x.dtype) |
|
|
desc = _cusparse.createDnVec(x.size, x.data.ptr, cuda_dtype) |
|
|
get = _cusparse.dnVecGet |
|
|
destroy = _cusparse.destroyDnVec |
|
|
return DnVecDescriptor(desc, get, destroy) |
|
|
|
|
|
|
|
|
class DnMatDescriptor(BaseDescriptor): |
|
|
|
|
|
@classmethod |
|
|
def create(cls, a): |
|
|
assert a.ndim == 2 |
|
|
assert a.flags.f_contiguous |
|
|
rows, cols = a.shape |
|
|
ld = rows |
|
|
cuda_dtype = _dtype.to_cuda_dtype(a.dtype) |
|
|
desc = _cusparse.createDnMat(rows, cols, ld, a.data.ptr, cuda_dtype, |
|
|
_cusparse.CUSPARSE_ORDER_COL) |
|
|
get = _cusparse.dnMatGet |
|
|
destroy = _cusparse.destroyDnMat |
|
|
return DnMatDescriptor(desc, get, destroy) |
|
|
|
|
|
|
|
|
def spmv(a, x, y=None, alpha=1, beta=0, transa=False): |
|
|
"""Multiplication of sparse matrix and dense vector. |
|
|
|
|
|
.. math:: |
|
|
|
|
|
y = \\alpha * op(A) x + \\beta * y |
|
|
|
|
|
Args: |
|
|
a (cupyx.scipy.sparse.csr_matrix, csc_matrix or coo_matrix): |
|
|
Sparse matrix A |
|
|
x (cupy.ndarray): Dense vector x |
|
|
y (cupy.ndarray or None): Dense vector y |
|
|
alpha (scalar): Coefficient |
|
|
beta (scalar): Coefficient |
|
|
transa (bool): If ``True``, op(A) = transpose of A. |
|
|
|
|
|
Returns: |
|
|
cupy.ndarray |
|
|
""" |
|
|
if not check_availability('spmv'): |
|
|
raise RuntimeError('spmv is not available.') |
|
|
|
|
|
if isinstance(a, cupyx.scipy.sparse.csc_matrix): |
|
|
aT = a.T |
|
|
if not isinstance(aT, cupyx.scipy.sparse.csr_matrix): |
|
|
msg = 'aT must be csr_matrix (actual: {})'.format(type(aT)) |
|
|
raise TypeError(msg) |
|
|
a = aT |
|
|
transa = not transa |
|
|
if not isinstance(a, (cupyx.scipy.sparse.csr_matrix, |
|
|
cupyx.scipy.sparse.coo_matrix)): |
|
|
raise TypeError('unsupported type (actual: {})'.format(type(a))) |
|
|
a_shape = a.shape if not transa else a.shape[::-1] |
|
|
if a_shape[1] != len(x): |
|
|
raise ValueError('dimension mismatch') |
|
|
assert a.has_canonical_format |
|
|
|
|
|
m, n = a_shape |
|
|
a, x, y = _cast_common_type(a, x, y) |
|
|
if y is None: |
|
|
y = _cupy.zeros(m, a.dtype) |
|
|
elif len(y) != m: |
|
|
raise ValueError('dimension mismatch') |
|
|
if a.nnz == 0: |
|
|
y.fill(0) |
|
|
return y |
|
|
|
|
|
desc_a = SpMatDescriptor.create(a) |
|
|
desc_x = DnVecDescriptor.create(x) |
|
|
desc_y = DnVecDescriptor.create(y) |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
op_a = _transpose_flag(transa) |
|
|
alpha = _numpy.array(alpha, a.dtype).ctypes |
|
|
beta = _numpy.array(beta, a.dtype).ctypes |
|
|
cuda_dtype = _dtype.to_cuda_dtype(a.dtype) |
|
|
alg = _cusparse.CUSPARSE_MV_ALG_DEFAULT |
|
|
buff_size = _cusparse.spMV_bufferSize(handle, op_a, alpha.data, |
|
|
desc_a.desc, desc_x.desc, beta.data, |
|
|
desc_y.desc, cuda_dtype, alg) |
|
|
buff = _cupy.empty(buff_size, _cupy.int8) |
|
|
_cusparse.spMV(handle, op_a, alpha.data, desc_a.desc, desc_x.desc, |
|
|
beta.data, desc_y.desc, cuda_dtype, alg, buff.data.ptr) |
|
|
|
|
|
return y |
|
|
|
|
|
|
|
|
def spmm(a, b, c=None, alpha=1, beta=0, transa=False, transb=False): |
|
|
"""Multiplication of sparse matrix and dense matrix. |
|
|
|
|
|
.. math:: |
|
|
|
|
|
C = \\alpha * op(A) op(B) + \\beta * C |
|
|
|
|
|
Args: |
|
|
a (cupyx.scipy.sparse.csr_matrix, csc_matrix or coo_matrix): |
|
|
Sparse matrix A |
|
|
b (cupy.ndarray): Dense matrix B |
|
|
c (cupy.ndarray or None): Dense matrix C |
|
|
alpha (scalar): Coefficient |
|
|
beta (scalar): Coefficient |
|
|
transa (bool): If ``True``, op(A) = transpose of A. |
|
|
transb (bool): If ``True``, op(B) = transpose of B. |
|
|
|
|
|
Returns: |
|
|
cupy.ndarray |
|
|
""" |
|
|
if not check_availability('spmm'): |
|
|
raise RuntimeError('spmm is not available.') |
|
|
|
|
|
assert a.ndim == b.ndim == 2 |
|
|
assert b.flags.f_contiguous |
|
|
assert c is None or c.flags.f_contiguous |
|
|
|
|
|
if isinstance(a, cupyx.scipy.sparse.csc_matrix): |
|
|
aT = a.T |
|
|
if not isinstance(aT, cupyx.scipy.sparse.csr_matrix): |
|
|
msg = 'aT must be csr_matrix (actual: {})'.format(type(aT)) |
|
|
raise TypeError(msg) |
|
|
a = aT |
|
|
transa = not transa |
|
|
if not isinstance(a, (cupyx.scipy.sparse.csr_matrix, |
|
|
cupyx.scipy.sparse.coo_matrix)): |
|
|
raise TypeError('unsupported type (actual: {})'.format(type(a))) |
|
|
a_shape = a.shape if not transa else a.shape[::-1] |
|
|
b_shape = b.shape if not transb else b.shape[::-1] |
|
|
if a_shape[1] != b_shape[0]: |
|
|
raise ValueError('dimension mismatch') |
|
|
assert a.has_canonical_format |
|
|
|
|
|
m, k = a_shape |
|
|
_, n = b_shape |
|
|
a, b, c = _cast_common_type(a, b, c) |
|
|
if c is None: |
|
|
c = _cupy.zeros((m, n), a.dtype, 'F') |
|
|
elif c.shape[0] != m or c.shape[1] != n: |
|
|
raise ValueError('dimension mismatch') |
|
|
if a.nnz == 0: |
|
|
c.fill(0) |
|
|
return c |
|
|
|
|
|
desc_a = SpMatDescriptor.create(a) |
|
|
desc_b = DnMatDescriptor.create(b) |
|
|
desc_c = DnMatDescriptor.create(c) |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
op_a = _transpose_flag(transa) |
|
|
op_b = _transpose_flag(transb) |
|
|
alpha = _numpy.array(alpha, a.dtype).ctypes |
|
|
beta = _numpy.array(beta, a.dtype).ctypes |
|
|
cuda_dtype = _dtype.to_cuda_dtype(a.dtype) |
|
|
alg = _cusparse.CUSPARSE_MM_ALG_DEFAULT |
|
|
buff_size = _cusparse.spMM_bufferSize(handle, op_a, op_b, alpha.data, |
|
|
desc_a.desc, desc_b.desc, beta.data, |
|
|
desc_c.desc, cuda_dtype, alg) |
|
|
buff = _cupy.empty(buff_size, _cupy.int8) |
|
|
buff_size = _cusparse.spMM(handle, op_a, op_b, alpha.data, desc_a.desc, |
|
|
desc_b.desc, beta.data, desc_c.desc, |
|
|
cuda_dtype, alg, buff.data.ptr) |
|
|
|
|
|
return c |
|
|
|
|
|
|
|
|
def csrsm2(a, b, alpha=1.0, lower=True, unit_diag=False, transa=False, |
|
|
blocking=True, level_info=False): |
|
|
"""Solves a sparse triangular linear system op(a) * x = alpha * b. |
|
|
|
|
|
Args: |
|
|
a (cupyx.scipy.sparse.csr_matrix or cupyx.scipy.sparse.csc_matrix): |
|
|
Sparse matrix with dimension ``(M, M)``. |
|
|
b (cupy.ndarray): Dense vector or matrix with dimension ``(M)`` or |
|
|
``(M, K)``. |
|
|
alpha (float or complex): Coefficient. |
|
|
lower (bool): |
|
|
True: ``a`` is lower triangle matrix. |
|
|
False: ``a`` is upper triangle matrix. |
|
|
unit_diag (bool): |
|
|
True: diagonal part of ``a`` has unit elements. |
|
|
False: diagonal part of ``a`` has non-unit elements. |
|
|
transa (bool or str): True, False, 'N', 'T' or 'H'. |
|
|
'N' or False: op(a) == ``a``. |
|
|
'T' or True: op(a) == ``a.T``. |
|
|
'H': op(a) == ``a.conj().T``. |
|
|
blocking (bool): |
|
|
True: blocking algorithm is used. |
|
|
False: non-blocking algorithm is used. |
|
|
level_info (bool): |
|
|
True: solves it with level information. |
|
|
False: solves it without level information. |
|
|
|
|
|
Note: ``b`` will be overwritten. |
|
|
""" |
|
|
if not check_availability('csrsm2'): |
|
|
raise RuntimeError('csrsm2 is not available.') |
|
|
|
|
|
if not (cupyx.scipy.sparse.isspmatrix_csr(a) or |
|
|
cupyx.scipy.sparse.isspmatrix_csc(a)): |
|
|
raise ValueError('a must be CSR or CSC sparse matrix') |
|
|
if not isinstance(b, _cupy.ndarray): |
|
|
raise ValueError('b must be cupy.ndarray') |
|
|
if b.ndim not in (1, 2): |
|
|
raise ValueError('b.ndim must be 1 or 2') |
|
|
if not (a.shape[0] == a.shape[1] == b.shape[0]): |
|
|
raise ValueError('invalid shape') |
|
|
if a.dtype != b.dtype: |
|
|
raise TypeError('dtype mismatch') |
|
|
|
|
|
if lower is True: |
|
|
fill_mode = _cusparse.CUSPARSE_FILL_MODE_LOWER |
|
|
elif lower is False: |
|
|
fill_mode = _cusparse.CUSPARSE_FILL_MODE_UPPER |
|
|
else: |
|
|
raise ValueError('Unknown lower (actual: {})'.format(lower)) |
|
|
|
|
|
if unit_diag is False: |
|
|
diag_type = _cusparse.CUSPARSE_DIAG_TYPE_NON_UNIT |
|
|
elif unit_diag is True: |
|
|
diag_type = _cusparse.CUSPARSE_DIAG_TYPE_UNIT |
|
|
else: |
|
|
raise ValueError('Unknown unit_diag (actual: {})'.format(unit_diag)) |
|
|
|
|
|
if blocking is False: |
|
|
algo = 0 |
|
|
elif blocking is True: |
|
|
algo = 1 |
|
|
else: |
|
|
raise ValueError('Unknown blocking (actual: {})'.format(blocking)) |
|
|
|
|
|
if level_info is False: |
|
|
policy = _cusparse.CUSPARSE_SOLVE_POLICY_NO_LEVEL |
|
|
elif level_info is True: |
|
|
policy = _cusparse.CUSPARSE_SOLVE_POLICY_USE_LEVEL |
|
|
else: |
|
|
raise ValueError('Unknown level_info (actual: {})'.format(level_info)) |
|
|
|
|
|
dtype = a.dtype |
|
|
if dtype.char == 'f': |
|
|
t = 's' |
|
|
elif dtype.char == 'd': |
|
|
t = 'd' |
|
|
elif dtype.char == 'F': |
|
|
t = 'c' |
|
|
elif dtype.char == 'D': |
|
|
t = 'z' |
|
|
else: |
|
|
raise TypeError('Invalid dtype (actual: {})'.format(dtype)) |
|
|
helper = getattr(_cusparse, t + 'csrsm2_bufferSizeExt') |
|
|
analysis = getattr(_cusparse, t + 'csrsm2_analysis') |
|
|
solve = getattr(_cusparse, t + 'csrsm2_solve') |
|
|
|
|
|
if transa is False or transa == 'N': |
|
|
transa = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE |
|
|
elif transa is True or transa == 'T': |
|
|
transa = _cusparse.CUSPARSE_OPERATION_TRANSPOSE |
|
|
elif transa == 'H': |
|
|
if dtype.char in 'fd': |
|
|
transa = _cusparse.CUSPARSE_OPERATION_TRANSPOSE |
|
|
else: |
|
|
transa = _cusparse.CUSPARSE_OPERATION_CONJUGATE_TRANSPOSE |
|
|
else: |
|
|
raise ValueError('Unknown transa (actual: {})'.format(transa)) |
|
|
|
|
|
if cupyx.scipy.sparse.isspmatrix_csc(a): |
|
|
if transa == _cusparse.CUSPARSE_OPERATION_CONJUGATE_TRANSPOSE: |
|
|
raise ValueError('If matrix is CSC format and complex dtype,' |
|
|
'transa must not be \'H\'') |
|
|
a = a.T |
|
|
assert cupyx.scipy.sparse.isspmatrix_csr(a) |
|
|
transa = 1 - transa |
|
|
fill_mode = 1 - fill_mode |
|
|
|
|
|
m = a.shape[0] |
|
|
nrhs = 1 if b.ndim == 1 else b.shape[1] |
|
|
if b._f_contiguous: |
|
|
transb = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE |
|
|
ldb = m |
|
|
elif b._c_contiguous: |
|
|
transb = _cusparse.CUSPARSE_OPERATION_TRANSPOSE |
|
|
ldb = nrhs |
|
|
else: |
|
|
raise ValueError('b must be F-contiguous or C-contiguous.') |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
alpha = _numpy.array(alpha, dtype=dtype) |
|
|
a_desc = MatDescriptor.create() |
|
|
a_desc.set_mat_type(_cusparse.CUSPARSE_MATRIX_TYPE_GENERAL) |
|
|
a_desc.set_mat_index_base(_cusparse.CUSPARSE_INDEX_BASE_ZERO) |
|
|
a_desc.set_mat_fill_mode(fill_mode) |
|
|
a_desc.set_mat_diag_type(diag_type) |
|
|
info = _cusparse.createCsrsm2Info() |
|
|
ws_size = helper(handle, algo, transa, transb, m, nrhs, a.nnz, |
|
|
alpha.ctypes.data, a_desc.descriptor, a.data.data.ptr, |
|
|
a.indptr.data.ptr, a.indices.data.ptr, b.data.ptr, ldb, |
|
|
info, policy) |
|
|
ws = _cupy.empty((ws_size,), dtype=_numpy.int8) |
|
|
|
|
|
analysis(handle, algo, transa, transb, m, nrhs, a.nnz, alpha.ctypes.data, |
|
|
a_desc.descriptor, a.data.data.ptr, a.indptr.data.ptr, |
|
|
a.indices.data.ptr, b.data.ptr, ldb, info, policy, ws.data.ptr) |
|
|
|
|
|
solve(handle, algo, transa, transb, m, nrhs, a.nnz, alpha.ctypes.data, |
|
|
a_desc.descriptor, a.data.data.ptr, a.indptr.data.ptr, |
|
|
a.indices.data.ptr, b.data.ptr, ldb, info, policy, ws.data.ptr) |
|
|
|
|
|
|
|
|
_stream.get_current_stream().synchronize() |
|
|
_cusparse.destroyCsrsm2Info(info) |
|
|
|
|
|
|
|
|
def csrilu02(a, level_info=False): |
|
|
"""Computes incomplete LU decomposition for a sparse square matrix. |
|
|
|
|
|
Args: |
|
|
a (cupyx.scipy.sparse.csr_matrix): |
|
|
Sparse matrix with dimension ``(M, M)``. |
|
|
level_info (bool): |
|
|
True: solves it with level information. |
|
|
False: solves it without level information. |
|
|
|
|
|
Note: ``a`` will be overwritten. This function does not support fill-in |
|
|
(only ILU(0) is supported) nor pivoting. |
|
|
""" |
|
|
if not check_availability('csrilu02'): |
|
|
raise RuntimeError('csrilu02 is not available.') |
|
|
|
|
|
if not cupyx.scipy.sparse.isspmatrix_csr(a): |
|
|
raise TypeError('a must be CSR sparse matrix') |
|
|
if a.shape[0] != a.shape[1]: |
|
|
raise ValueError('invalid shape (a.shape: {})'.format(a.shape)) |
|
|
|
|
|
if level_info is False: |
|
|
policy = _cusparse.CUSPARSE_SOLVE_POLICY_NO_LEVEL |
|
|
elif level_info is True: |
|
|
policy = _cusparse.CUSPARSE_SOLVE_POLICY_USE_LEVEL |
|
|
else: |
|
|
raise ValueError('Unknown level_info (actual: {})'.format(level_info)) |
|
|
|
|
|
dtype = a.dtype |
|
|
if dtype.char == 'f': |
|
|
t = 's' |
|
|
elif dtype.char == 'd': |
|
|
t = 'd' |
|
|
elif dtype.char == 'F': |
|
|
t = 'c' |
|
|
elif dtype.char == 'D': |
|
|
t = 'z' |
|
|
else: |
|
|
raise TypeError('Invalid dtype (actual: {})'.format(dtype)) |
|
|
helper = getattr(_cusparse, t + 'csrilu02_bufferSize') |
|
|
analysis = getattr(_cusparse, t + 'csrilu02_analysis') |
|
|
solve = getattr(_cusparse, t + 'csrilu02') |
|
|
check = getattr(_cusparse, 'xcsrilu02_zeroPivot') |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
m = a.shape[0] |
|
|
nnz = a.nnz |
|
|
desc = MatDescriptor.create() |
|
|
desc.set_mat_type(_cusparse.CUSPARSE_MATRIX_TYPE_GENERAL) |
|
|
desc.set_mat_index_base(_cusparse.CUSPARSE_INDEX_BASE_ZERO) |
|
|
info = _cusparse.createCsrilu02Info() |
|
|
ws_size = helper(handle, m, nnz, desc.descriptor, a.data.data.ptr, |
|
|
a.indptr.data.ptr, a.indices.data.ptr, info) |
|
|
ws = _cupy.empty((ws_size,), dtype=_numpy.int8) |
|
|
position = _numpy.empty((1,), dtype=_numpy.int32) |
|
|
|
|
|
analysis(handle, m, nnz, desc.descriptor, a.data.data.ptr, |
|
|
a.indptr.data.ptr, a.indices.data.ptr, info, policy, ws.data.ptr) |
|
|
try: |
|
|
check(handle, info, position.ctypes.data) |
|
|
except Exception: |
|
|
raise ValueError('a({0},{0}) is missing'.format(position[0])) |
|
|
|
|
|
solve(handle, m, nnz, desc.descriptor, a.data.data.ptr, |
|
|
a.indptr.data.ptr, a.indices.data.ptr, info, policy, ws.data.ptr) |
|
|
try: |
|
|
check(handle, info, position.ctypes.data) |
|
|
except Exception: |
|
|
raise ValueError('u({0},{0}) is zero'.format(position[0])) |
|
|
|
|
|
|
|
|
def denseToSparse(x, format='csr'): |
|
|
"""Converts a dense matrix into a CSR, CSC or COO format. |
|
|
|
|
|
Args: |
|
|
x (cupy.ndarray): A matrix to be converted. |
|
|
format (str): Format of converted matrix. It must be either 'csr', |
|
|
'csc' or 'coo'. |
|
|
|
|
|
Returns: |
|
|
cupyx.scipy.sparse.spmatrix: A converted sparse matrix. |
|
|
|
|
|
""" |
|
|
if not check_availability('denseToSparse'): |
|
|
raise RuntimeError('denseToSparse is not available.') |
|
|
|
|
|
assert x.ndim == 2 |
|
|
assert x.dtype.char in 'fdFD' |
|
|
x = _cupy.asfortranarray(x) |
|
|
desc_x = DnMatDescriptor.create(x) |
|
|
if format == 'csr': |
|
|
y = cupyx.scipy.sparse.csr_matrix(x.shape, dtype=x.dtype) |
|
|
elif format == 'csc': |
|
|
y = cupyx.scipy.sparse.csc_matrix(x.shape, dtype=x.dtype) |
|
|
elif format == 'coo': |
|
|
y = cupyx.scipy.sparse.coo_matrix(x.shape, dtype=x.dtype) |
|
|
else: |
|
|
raise TypeError('unsupported format (actual: {})'.format(format)) |
|
|
desc_y = SpMatDescriptor.create(y) |
|
|
algo = _cusparse.CUSPARSE_DENSETOSPARSE_ALG_DEFAULT |
|
|
handle = _device.get_cusparse_handle() |
|
|
buff_size = _cusparse.denseToSparse_bufferSize(handle, desc_x.desc, |
|
|
desc_y.desc, algo) |
|
|
buff = _cupy.empty(buff_size, _cupy.int8) |
|
|
_cusparse.denseToSparse_analysis(handle, desc_x.desc, |
|
|
desc_y.desc, algo, buff.data.ptr) |
|
|
num_rows_tmp = _numpy.array(0, dtype='int64') |
|
|
num_cols_tmp = _numpy.array(0, dtype='int64') |
|
|
nnz = _numpy.array(0, dtype='int64') |
|
|
_cusparse.spMatGetSize(desc_y.desc, num_rows_tmp.ctypes.data, |
|
|
num_cols_tmp.ctypes.data, nnz.ctypes.data) |
|
|
nnz = int(nnz) |
|
|
if _runtime.is_hip: |
|
|
if nnz == 0: |
|
|
raise ValueError('hipSPARSE currently cannot handle ' |
|
|
'sparse matrices with null ptrs') |
|
|
if format == 'csr': |
|
|
indptr = y.indptr |
|
|
indices = _cupy.empty(nnz, 'i') |
|
|
data = _cupy.empty(nnz, x.dtype) |
|
|
y = cupyx.scipy.sparse.csr_matrix((data, indices, indptr), |
|
|
shape=x.shape) |
|
|
elif format == 'csc': |
|
|
indptr = y.indptr |
|
|
indices = _cupy.empty(nnz, 'i') |
|
|
data = _cupy.empty(nnz, x.dtype) |
|
|
y = cupyx.scipy.sparse.csc_matrix((data, indices, indptr), |
|
|
shape=x.shape) |
|
|
elif format == 'coo': |
|
|
row = _cupy.zeros(nnz, 'i') |
|
|
col = _cupy.zeros(nnz, 'i') |
|
|
|
|
|
|
|
|
|
|
|
data = _cupy.empty(nnz, x.dtype) |
|
|
y = cupyx.scipy.sparse.coo_matrix((data, (row, col)), shape=x.shape) |
|
|
desc_y = SpMatDescriptor.create(y) |
|
|
_cusparse.denseToSparse_convert(handle, desc_x.desc, |
|
|
desc_y.desc, algo, buff.data.ptr) |
|
|
y._has_canonical_format = True |
|
|
return y |
|
|
|
|
|
|
|
|
def sparseToDense(x, out=None): |
|
|
"""Converts sparse matrix to a dense matrix. |
|
|
|
|
|
Args: |
|
|
x (cupyx.scipy.sparse.spmatrix): A sparse matrix to convert. |
|
|
out (cupy.ndarray or None): A dense metrix to store the result. |
|
|
It must be F-contiguous. |
|
|
|
|
|
Returns: |
|
|
cupy.ndarray: A converted dense matrix. |
|
|
|
|
|
""" |
|
|
if not check_availability('sparseToDense'): |
|
|
raise RuntimeError('sparseToDense is not available.') |
|
|
|
|
|
dtype = x.dtype |
|
|
assert dtype.char in 'fdFD' |
|
|
if out is None: |
|
|
out = _cupy.zeros(x.shape, dtype=dtype, order='F') |
|
|
else: |
|
|
assert out.flags.f_contiguous |
|
|
assert out.dtype == dtype |
|
|
|
|
|
desc_x = SpMatDescriptor.create(x) |
|
|
desc_out = DnMatDescriptor.create(out) |
|
|
algo = _cusparse.CUSPARSE_SPARSETODENSE_ALG_DEFAULT |
|
|
handle = _device.get_cusparse_handle() |
|
|
buff_size = _cusparse.sparseToDense_bufferSize(handle, desc_x.desc, |
|
|
desc_out.desc, algo) |
|
|
buff = _cupy.empty(buff_size, _cupy.int8) |
|
|
if _runtime.is_hip: |
|
|
if x.nnz == 0: |
|
|
raise ValueError('hipSPARSE currently cannot handle ' |
|
|
'sparse matrices with null ptrs') |
|
|
_cusparse.sparseToDense(handle, desc_x.desc, |
|
|
desc_out.desc, algo, buff.data.ptr) |
|
|
|
|
|
return out |
|
|
|
|
|
|
|
|
def spsm(a, b, alpha=1.0, lower=True, unit_diag=False, transa=False): |
|
|
"""Solves a sparse triangular linear system op(a) * x = alpha * op(b). |
|
|
|
|
|
Args: |
|
|
a (cupyx.scipy.sparse.csr_matrix or cupyx.scipy.sparse.coo_matrix): |
|
|
Sparse matrix with dimension ``(M, M)``. |
|
|
b (cupy.ndarray): Dense matrix with dimension ``(M, K)``. |
|
|
alpha (float or complex): Coefficient. |
|
|
lower (bool): |
|
|
True: ``a`` is lower triangle matrix. |
|
|
False: ``a`` is upper triangle matrix. |
|
|
unit_diag (bool): |
|
|
True: diagonal part of ``a`` has unit elements. |
|
|
False: diagonal part of ``a`` has non-unit elements. |
|
|
transa (bool or str): True, False, 'N', 'T' or 'H'. |
|
|
'N' or False: op(a) == ``a``. |
|
|
'T' or True: op(a) == ``a.T``. |
|
|
'H': op(a) == ``a.conj().T``. |
|
|
""" |
|
|
if not check_availability('spsm'): |
|
|
raise RuntimeError('spsm is not available.') |
|
|
|
|
|
|
|
|
if transa is False: |
|
|
transa = 'N' |
|
|
elif transa is True: |
|
|
transa = 'T' |
|
|
elif transa not in 'NTH': |
|
|
raise ValueError(f'Unknown transa (actual: {transa})') |
|
|
|
|
|
|
|
|
if cupyx.scipy.sparse.isspmatrix_csr(a): |
|
|
pass |
|
|
elif cupyx.scipy.sparse.isspmatrix_csc(a): |
|
|
if transa == 'N': |
|
|
a = a.T |
|
|
transa = 'T' |
|
|
elif transa == 'T': |
|
|
a = a.T |
|
|
transa = 'N' |
|
|
elif transa == 'H': |
|
|
a = a.conj().T |
|
|
transa = 'N' |
|
|
lower = not lower |
|
|
elif cupyx.scipy.sparse.isspmatrix_coo(a): |
|
|
pass |
|
|
else: |
|
|
raise ValueError('a must be CSR, CSC or COO sparse matrix') |
|
|
assert a.has_canonical_format |
|
|
|
|
|
|
|
|
if b.ndim == 1: |
|
|
is_b_vector = True |
|
|
b = b.reshape(-1, 1) |
|
|
elif b.ndim == 2: |
|
|
is_b_vector = False |
|
|
else: |
|
|
raise ValueError('b.ndim must be 1 or 2') |
|
|
|
|
|
|
|
|
if not (a.shape[0] == a.shape[1] == b.shape[0]): |
|
|
raise ValueError('mismatched shape') |
|
|
|
|
|
|
|
|
dtype = a.dtype |
|
|
if dtype.char not in 'fdFD': |
|
|
raise TypeError('Invalid dtype (actual: {})'.format(dtype)) |
|
|
if dtype != b.dtype: |
|
|
raise TypeError('dtype mismatch') |
|
|
|
|
|
|
|
|
if lower is True: |
|
|
fill_mode = _cusparse.CUSPARSE_FILL_MODE_LOWER |
|
|
elif lower is False: |
|
|
fill_mode = _cusparse.CUSPARSE_FILL_MODE_UPPER |
|
|
else: |
|
|
raise ValueError('Unknown lower (actual: {})'.format(lower)) |
|
|
|
|
|
|
|
|
if unit_diag is False: |
|
|
diag_type = _cusparse.CUSPARSE_DIAG_TYPE_NON_UNIT |
|
|
elif unit_diag is True: |
|
|
diag_type = _cusparse.CUSPARSE_DIAG_TYPE_UNIT |
|
|
else: |
|
|
raise ValueError('Unknown unit_diag (actual: {})'.format(unit_diag)) |
|
|
|
|
|
|
|
|
if transa == 'N': |
|
|
op_a = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE |
|
|
elif transa == 'T': |
|
|
op_a = _cusparse.CUSPARSE_OPERATION_TRANSPOSE |
|
|
else: |
|
|
if dtype.char in 'fd': |
|
|
op_a = _cusparse.CUSPARSE_OPERATION_TRANSPOSE |
|
|
else: |
|
|
op_a = _cusparse.CUSPARSE_OPERATION_CONJUGATE_TRANSPOSE |
|
|
|
|
|
|
|
|
if b._f_contiguous: |
|
|
op_b = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE |
|
|
elif b._c_contiguous: |
|
|
if _cusparse.get_build_version() < 11701: |
|
|
raise ValueError('b must be F-contiguous.') |
|
|
b = b.T |
|
|
op_b = _cusparse.CUSPARSE_OPERATION_TRANSPOSE |
|
|
else: |
|
|
raise ValueError('b must be F-contiguous or C-contiguous.') |
|
|
|
|
|
|
|
|
|
|
|
m, _ = a.shape |
|
|
if op_b == _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE: |
|
|
_, n = b.shape |
|
|
else: |
|
|
n, _ = b.shape |
|
|
c_shape = m, n |
|
|
c = _cupy.zeros(c_shape, dtype=a.dtype, order='f') |
|
|
|
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
mat_a = SpMatDescriptor.create(a) |
|
|
mat_b = DnMatDescriptor.create(b) |
|
|
mat_c = DnMatDescriptor.create(c) |
|
|
spsm_descr = _cusparse.spSM_createDescr() |
|
|
alpha = _numpy.array(alpha, dtype=c.dtype).ctypes |
|
|
cuda_dtype = _dtype.to_cuda_dtype(c.dtype) |
|
|
algo = _cusparse.CUSPARSE_SPSM_ALG_DEFAULT |
|
|
|
|
|
try: |
|
|
|
|
|
mat_a.set_attribute(_cusparse.CUSPARSE_SPMAT_FILL_MODE, fill_mode) |
|
|
|
|
|
|
|
|
mat_a.set_attribute(_cusparse.CUSPARSE_SPMAT_DIAG_TYPE, diag_type) |
|
|
|
|
|
|
|
|
buff_size = _cusparse.spSM_bufferSize( |
|
|
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, |
|
|
mat_c.desc, cuda_dtype, algo, spsm_descr) |
|
|
buff = _cupy.empty(buff_size, dtype=_cupy.int8) |
|
|
|
|
|
|
|
|
_cusparse.spSM_analysis( |
|
|
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, |
|
|
mat_c.desc, cuda_dtype, algo, spsm_descr, buff.data.ptr) |
|
|
|
|
|
|
|
|
_cusparse.spSM_solve( |
|
|
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, |
|
|
mat_c.desc, cuda_dtype, algo, spsm_descr, buff.data.ptr) |
|
|
|
|
|
|
|
|
if is_b_vector: |
|
|
c = c.reshape(-1) |
|
|
|
|
|
return c |
|
|
|
|
|
finally: |
|
|
|
|
|
_cusparse.spSM_destroyDescr(spsm_descr) |
|
|
|
|
|
|
|
|
def spgemm(a, b, alpha=1): |
|
|
"""Matrix-matrix product for CSR-matrix. |
|
|
|
|
|
math:: |
|
|
C = alpha * A * B |
|
|
|
|
|
Args: |
|
|
a (cupyx.scipy.sparse.csr_matrix): Sparse matrix A. |
|
|
b (cupyx.scipy.sparse.csr_matrix): Sparse matrix B. |
|
|
alpha (scalar): Coefficient |
|
|
|
|
|
Returns: |
|
|
cupyx.scipy.sparse.csr_matrix |
|
|
|
|
|
""" |
|
|
if not check_availability('spgemm'): |
|
|
raise RuntimeError('spgemm is not available.') |
|
|
|
|
|
assert a.ndim == b.ndim == 2 |
|
|
if not isinstance(a, cupyx.scipy.sparse.csr_matrix): |
|
|
raise TypeError('unsupported type (actual: {})'.format(type(a))) |
|
|
if not isinstance(b, cupyx.scipy.sparse.csr_matrix): |
|
|
raise TypeError('unsupported type (actual: {})'.format(type(b))) |
|
|
assert a.has_canonical_format |
|
|
assert b.has_canonical_format |
|
|
if a.shape[1] != b.shape[0]: |
|
|
raise ValueError('mismatched shape') |
|
|
|
|
|
m, k = a.shape |
|
|
_, n = b.shape |
|
|
a, b = _cast_common_type(a, b) |
|
|
c_shape = (m, n) |
|
|
c = cupyx.scipy.sparse.csr_matrix((c_shape), dtype=a.dtype) |
|
|
|
|
|
handle = _device.get_cusparse_handle() |
|
|
mat_a = SpMatDescriptor.create(a) |
|
|
mat_b = SpMatDescriptor.create(b) |
|
|
mat_c = SpMatDescriptor.create(c) |
|
|
spgemm_descr = _cusparse.spGEMM_createDescr() |
|
|
op_a = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE |
|
|
op_b = _cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE |
|
|
alpha = _numpy.array(alpha, dtype=c.dtype).ctypes |
|
|
beta = _numpy.array(0, dtype=c.dtype).ctypes |
|
|
cuda_dtype = _dtype.to_cuda_dtype(c.dtype) |
|
|
algo = _cusparse.CUSPARSE_SPGEMM_DEFAULT |
|
|
null_ptr = 0 |
|
|
|
|
|
|
|
|
buff1_size = _cusparse.spGEMM_workEstimation( |
|
|
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data, |
|
|
mat_c.desc, cuda_dtype, algo, spgemm_descr, 0, null_ptr) |
|
|
buff1 = _cupy.empty(buff1_size, _cupy.int8) |
|
|
_cusparse.spGEMM_workEstimation( |
|
|
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data, |
|
|
mat_c.desc, cuda_dtype, algo, spgemm_descr, buff1_size, buff1.data.ptr) |
|
|
|
|
|
|
|
|
buff2_size = _cusparse.spGEMM_compute( |
|
|
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data, |
|
|
mat_c.desc, cuda_dtype, algo, spgemm_descr, 0, null_ptr) |
|
|
buff2 = _cupy.empty(buff2_size, _cupy.int8) |
|
|
_cusparse.spGEMM_compute( |
|
|
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data, |
|
|
mat_c.desc, cuda_dtype, algo, spgemm_descr, buff2_size, buff2.data.ptr) |
|
|
|
|
|
|
|
|
c_num_rows = _numpy.array(0, dtype='int64') |
|
|
c_num_cols = _numpy.array(0, dtype='int64') |
|
|
c_nnz = _numpy.array(0, dtype='int64') |
|
|
_cusparse.spMatGetSize(mat_c.desc, c_num_rows.ctypes.data, |
|
|
c_num_cols.ctypes.data, c_nnz.ctypes.data) |
|
|
assert c_shape[0] == int(c_num_rows) |
|
|
assert c_shape[1] == int(c_num_cols) |
|
|
c_nnz = int(c_nnz) |
|
|
c_indptr = c.indptr |
|
|
c_indices = _cupy.empty(c_nnz, 'i') |
|
|
c_data = _cupy.empty(c_nnz, c.dtype) |
|
|
_cusparse.csrSetPointers(mat_c.desc, c_indptr.data.ptr, c_indices.data.ptr, |
|
|
c_data.data.ptr) |
|
|
|
|
|
|
|
|
_cusparse.spGEMM_copy( |
|
|
handle, op_a, op_b, alpha.data, mat_a.desc, mat_b.desc, beta.data, |
|
|
mat_c.desc, cuda_dtype, algo, spgemm_descr) |
|
|
c = cupyx.scipy.sparse.csr_matrix((c_data, c_indices, c_indptr), |
|
|
shape=c_shape) |
|
|
|
|
|
_cusparse.spGEMM_destroyDescr(spgemm_descr) |
|
|
return c |
|
|
|