midah commited on
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2b3626e
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1 Parent(s): 8ce4828

Remove flat: scripts/embed_figures.py

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  1. scripts/embed_figures.py +0 -107
scripts/embed_figures.py DELETED
@@ -1,107 +0,0 @@
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- """Compute CLIP embeddings for all extracted patent figures.
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-
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- Uses open_clip ViT-L/14 (best open-source CLIP) to embed each TIF.
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- Saves embeddings as parquet with figure_id index for fast lookup.
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-
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- Usage:
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- python scripts/eval/embed_figures.py \
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- --enriched data/enriched/enriched_2022.parquet \
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- --images /tmp/patent_sample/2022 \
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- --out data/embeddings/embeddings_2022.parquet \
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- --batch 64
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- """
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-
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- import argparse
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- from pathlib import Path
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-
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- import numpy as np
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- import open_clip
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- import pandas as pd
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- import torch
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- from PIL import Image
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- from tqdm import tqdm
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-
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-
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- def find_image(images_dir: Path, image_filename: str) -> Path | None:
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- parts = image_filename.split("-D0")
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- if len(parts) < 2:
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- return None
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- p = images_dir / parts[0] / image_filename
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- return p if p.exists() else None
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-
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-
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- def embed_batch(model, preprocess, paths: list[Path], device: str) -> np.ndarray:
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- imgs = []
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- for p in paths:
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- try:
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- img = Image.open(p).convert("RGB")
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- imgs.append(preprocess(img))
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- except Exception:
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- imgs.append(torch.zeros(3, 224, 224))
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- batch = torch.stack(imgs).to(device)
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- with torch.no_grad():
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- feats = model.encode_image(batch)
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- feats = feats / feats.norm(dim=-1, keepdim=True)
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- return feats.cpu().numpy()
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-
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-
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- def main():
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- parser = argparse.ArgumentParser()
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- parser.add_argument("--enriched", default="data/enriched/enriched_2022.parquet")
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- parser.add_argument("--images", default="/tmp/patent_sample/2022")
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- parser.add_argument("--out", default="data/embeddings/embeddings_2022.parquet")
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- parser.add_argument("--batch", type=int, default=64)
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- parser.add_argument("--model", default="ViT-L-14")
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- parser.add_argument("--pretrained", default="openai")
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- args = parser.parse_args()
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-
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- device = "cuda" if torch.cuda.is_available() else "cpu"
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- print(f"Device: {device}")
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-
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- print(f"Loading {args.model} ({args.pretrained})...")
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- model, _, preprocess = open_clip.create_model_and_transforms(
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- args.model, pretrained=args.pretrained
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- )
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- model = model.to(device).eval()
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-
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- df = pd.read_parquet(args.enriched)
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- images_dir = Path(args.images)
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-
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- # Resolve image paths
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- df["_img_path"] = df["image_filename"].apply(
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- lambda fn: find_image(images_dir, fn)
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- )
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- found = df["_img_path"].notna().sum()
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- print(f"Images resolved: {found:,} / {len(df):,}")
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- df = df[df["_img_path"].notna()].reset_index(drop=True)
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-
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- # Embed in batches
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- all_ids, all_vecs = [], []
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- batch_size = args.batch
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- paths = df["_img_path"].tolist()
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- fig_ids = df["figure_id"].tolist()
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-
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- for i in tqdm(range(0, len(paths), batch_size), desc="Embedding"):
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- batch_paths = paths[i : i + batch_size]
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- batch_ids = fig_ids[i : i + batch_size]
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- vecs = embed_batch(model, preprocess, batch_paths, device)
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- all_ids.extend(batch_ids)
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- all_vecs.append(vecs)
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-
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- all_vecs = np.vstack(all_vecs)
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- print(f"Embedding matrix: {all_vecs.shape}")
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-
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- Path(args.out).parent.mkdir(parents=True, exist_ok=True)
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- out_df = pd.DataFrame({"figure_id": all_ids})
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- # Store each embedding dimension as a column — efficient for FAISS loading
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- out_df["embedding"] = list(all_vecs)
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- out_df.to_parquet(args.out, index=False)
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- print(f"Saved → {args.out}")
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-
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- # Quick sanity check
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- print(f"Sample figure: {all_ids[0]}")
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- print(f"Embedding norm: {np.linalg.norm(all_vecs[0]):.4f} (should be 1.0)")
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-
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-
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- if __name__ == "__main__":
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- main()