Remove flat: scripts/embed_figures.py
Browse files- scripts/embed_figures.py +0 -107
scripts/embed_figures.py
DELETED
|
@@ -1,107 +0,0 @@
|
|
| 1 |
-
"""Compute CLIP embeddings for all extracted patent figures.
|
| 2 |
-
|
| 3 |
-
Uses open_clip ViT-L/14 (best open-source CLIP) to embed each TIF.
|
| 4 |
-
Saves embeddings as parquet with figure_id index for fast lookup.
|
| 5 |
-
|
| 6 |
-
Usage:
|
| 7 |
-
python scripts/eval/embed_figures.py \
|
| 8 |
-
--enriched data/enriched/enriched_2022.parquet \
|
| 9 |
-
--images /tmp/patent_sample/2022 \
|
| 10 |
-
--out data/embeddings/embeddings_2022.parquet \
|
| 11 |
-
--batch 64
|
| 12 |
-
"""
|
| 13 |
-
|
| 14 |
-
import argparse
|
| 15 |
-
from pathlib import Path
|
| 16 |
-
|
| 17 |
-
import numpy as np
|
| 18 |
-
import open_clip
|
| 19 |
-
import pandas as pd
|
| 20 |
-
import torch
|
| 21 |
-
from PIL import Image
|
| 22 |
-
from tqdm import tqdm
|
| 23 |
-
|
| 24 |
-
|
| 25 |
-
def find_image(images_dir: Path, image_filename: str) -> Path | None:
|
| 26 |
-
parts = image_filename.split("-D0")
|
| 27 |
-
if len(parts) < 2:
|
| 28 |
-
return None
|
| 29 |
-
p = images_dir / parts[0] / image_filename
|
| 30 |
-
return p if p.exists() else None
|
| 31 |
-
|
| 32 |
-
|
| 33 |
-
def embed_batch(model, preprocess, paths: list[Path], device: str) -> np.ndarray:
|
| 34 |
-
imgs = []
|
| 35 |
-
for p in paths:
|
| 36 |
-
try:
|
| 37 |
-
img = Image.open(p).convert("RGB")
|
| 38 |
-
imgs.append(preprocess(img))
|
| 39 |
-
except Exception:
|
| 40 |
-
imgs.append(torch.zeros(3, 224, 224))
|
| 41 |
-
batch = torch.stack(imgs).to(device)
|
| 42 |
-
with torch.no_grad():
|
| 43 |
-
feats = model.encode_image(batch)
|
| 44 |
-
feats = feats / feats.norm(dim=-1, keepdim=True)
|
| 45 |
-
return feats.cpu().numpy()
|
| 46 |
-
|
| 47 |
-
|
| 48 |
-
def main():
|
| 49 |
-
parser = argparse.ArgumentParser()
|
| 50 |
-
parser.add_argument("--enriched", default="data/enriched/enriched_2022.parquet")
|
| 51 |
-
parser.add_argument("--images", default="/tmp/patent_sample/2022")
|
| 52 |
-
parser.add_argument("--out", default="data/embeddings/embeddings_2022.parquet")
|
| 53 |
-
parser.add_argument("--batch", type=int, default=64)
|
| 54 |
-
parser.add_argument("--model", default="ViT-L-14")
|
| 55 |
-
parser.add_argument("--pretrained", default="openai")
|
| 56 |
-
args = parser.parse_args()
|
| 57 |
-
|
| 58 |
-
device = "cuda" if torch.cuda.is_available() else "cpu"
|
| 59 |
-
print(f"Device: {device}")
|
| 60 |
-
|
| 61 |
-
print(f"Loading {args.model} ({args.pretrained})...")
|
| 62 |
-
model, _, preprocess = open_clip.create_model_and_transforms(
|
| 63 |
-
args.model, pretrained=args.pretrained
|
| 64 |
-
)
|
| 65 |
-
model = model.to(device).eval()
|
| 66 |
-
|
| 67 |
-
df = pd.read_parquet(args.enriched)
|
| 68 |
-
images_dir = Path(args.images)
|
| 69 |
-
|
| 70 |
-
# Resolve image paths
|
| 71 |
-
df["_img_path"] = df["image_filename"].apply(
|
| 72 |
-
lambda fn: find_image(images_dir, fn)
|
| 73 |
-
)
|
| 74 |
-
found = df["_img_path"].notna().sum()
|
| 75 |
-
print(f"Images resolved: {found:,} / {len(df):,}")
|
| 76 |
-
df = df[df["_img_path"].notna()].reset_index(drop=True)
|
| 77 |
-
|
| 78 |
-
# Embed in batches
|
| 79 |
-
all_ids, all_vecs = [], []
|
| 80 |
-
batch_size = args.batch
|
| 81 |
-
paths = df["_img_path"].tolist()
|
| 82 |
-
fig_ids = df["figure_id"].tolist()
|
| 83 |
-
|
| 84 |
-
for i in tqdm(range(0, len(paths), batch_size), desc="Embedding"):
|
| 85 |
-
batch_paths = paths[i : i + batch_size]
|
| 86 |
-
batch_ids = fig_ids[i : i + batch_size]
|
| 87 |
-
vecs = embed_batch(model, preprocess, batch_paths, device)
|
| 88 |
-
all_ids.extend(batch_ids)
|
| 89 |
-
all_vecs.append(vecs)
|
| 90 |
-
|
| 91 |
-
all_vecs = np.vstack(all_vecs)
|
| 92 |
-
print(f"Embedding matrix: {all_vecs.shape}")
|
| 93 |
-
|
| 94 |
-
Path(args.out).parent.mkdir(parents=True, exist_ok=True)
|
| 95 |
-
out_df = pd.DataFrame({"figure_id": all_ids})
|
| 96 |
-
# Store each embedding dimension as a column — efficient for FAISS loading
|
| 97 |
-
out_df["embedding"] = list(all_vecs)
|
| 98 |
-
out_df.to_parquet(args.out, index=False)
|
| 99 |
-
print(f"Saved → {args.out}")
|
| 100 |
-
|
| 101 |
-
# Quick sanity check
|
| 102 |
-
print(f"Sample figure: {all_ids[0]}")
|
| 103 |
-
print(f"Embedding norm: {np.linalg.norm(all_vecs[0]):.4f} (should be 1.0)")
|
| 104 |
-
|
| 105 |
-
|
| 106 |
-
if __name__ == "__main__":
|
| 107 |
-
main()
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|