Remove flat: scripts/embed_modal.py
Browse files- scripts/embed_modal.py +0 -167
scripts/embed_modal.py
DELETED
|
@@ -1,167 +0,0 @@
|
|
| 1 |
-
"""Modal GPU job for CLIP embedding — ~10 min on A10G, no local storage.
|
| 2 |
-
|
| 3 |
-
Mounts IMPACT from HF, runs CLIP ViT-L/14 on GPU, pushes parquet to HF Hub.
|
| 4 |
-
|
| 5 |
-
Setup (one time):
|
| 6 |
-
pip install modal
|
| 7 |
-
modal setup # authenticate
|
| 8 |
-
modal secret create hf-secret HF_TOKEN=hf_...
|
| 9 |
-
|
| 10 |
-
Run:
|
| 11 |
-
modal run scripts/cloud/embed_modal.py
|
| 12 |
-
|
| 13 |
-
Output: hf://datasets/midah/patent-wireframes/embeddings_2022_vitl14.parquet
|
| 14 |
-
"""
|
| 15 |
-
|
| 16 |
-
import io
|
| 17 |
-
import os
|
| 18 |
-
|
| 19 |
-
import modal
|
| 20 |
-
|
| 21 |
-
# ── Modal image with all dependencies ────────────────────────────────────────
|
| 22 |
-
|
| 23 |
-
image = (
|
| 24 |
-
modal.Image.debian_slim(python_version="3.11")
|
| 25 |
-
.pip_install(
|
| 26 |
-
"open_clip_torch",
|
| 27 |
-
"huggingface_hub",
|
| 28 |
-
"datasets",
|
| 29 |
-
"Pillow",
|
| 30 |
-
"pandas",
|
| 31 |
-
"numpy",
|
| 32 |
-
"tqdm",
|
| 33 |
-
)
|
| 34 |
-
)
|
| 35 |
-
|
| 36 |
-
app = modal.App("patent-clip-embed", image=image)
|
| 37 |
-
|
| 38 |
-
# Secret holds HF_TOKEN
|
| 39 |
-
hf_secret = modal.Secret.from_name("hf-secret")
|
| 40 |
-
|
| 41 |
-
|
| 42 |
-
@app.function(
|
| 43 |
-
gpu="A10G",
|
| 44 |
-
timeout=3600,
|
| 45 |
-
secrets=[hf_secret],
|
| 46 |
-
memory=16384,
|
| 47 |
-
)
|
| 48 |
-
def embed_year(year: str = "2022", model_name: str = "ViT-L-14", pretrained: str = "openai"):
|
| 49 |
-
import ast
|
| 50 |
-
import csv
|
| 51 |
-
import zipfile
|
| 52 |
-
|
| 53 |
-
import numpy as np
|
| 54 |
-
import open_clip
|
| 55 |
-
import pandas as pd
|
| 56 |
-
import torch
|
| 57 |
-
from huggingface_hub import HfApi, hf_hub_download
|
| 58 |
-
from PIL import Image
|
| 59 |
-
from tqdm import tqdm
|
| 60 |
-
|
| 61 |
-
token = os.environ["HF_TOKEN"]
|
| 62 |
-
device = "cuda"
|
| 63 |
-
|
| 64 |
-
# Load CLIP model
|
| 65 |
-
print(f"Loading {model_name} ({pretrained}) on {device}...")
|
| 66 |
-
model, _, preprocess = open_clip.create_model_and_transforms(
|
| 67 |
-
model_name, pretrained=pretrained
|
| 68 |
-
)
|
| 69 |
-
model = model.to(device).eval()
|
| 70 |
-
|
| 71 |
-
# Download IMPACT CSV (small — just metadata)
|
| 72 |
-
csv_path = hf_hub_download(
|
| 73 |
-
repo_id="AI4Patents/IMPACT",
|
| 74 |
-
filename=f"{year}.csv",
|
| 75 |
-
repo_type="dataset",
|
| 76 |
-
token=token,
|
| 77 |
-
)
|
| 78 |
-
|
| 79 |
-
# Build list of (patent_id, figure_num, image_filename)
|
| 80 |
-
figures = []
|
| 81 |
-
with open(csv_path) as f:
|
| 82 |
-
for row in csv.DictReader(f):
|
| 83 |
-
try:
|
| 84 |
-
fnames = ast.literal_eval(row["file_names"])
|
| 85 |
-
pid = row["id"]
|
| 86 |
-
for i, fn in enumerate(fnames):
|
| 87 |
-
figures.append({"patent_id": pid, "figure_num": i, "filename": fn})
|
| 88 |
-
except Exception:
|
| 89 |
-
pass
|
| 90 |
-
|
| 91 |
-
print(f"Total figures: {len(figures):,}")
|
| 92 |
-
|
| 93 |
-
# Download the zip (4.4GB — into Modal's /tmp, ephemeral)
|
| 94 |
-
print("Downloading IMPACT zip...")
|
| 95 |
-
zip_path = hf_hub_download(
|
| 96 |
-
repo_id="AI4Patents/IMPACT",
|
| 97 |
-
filename=f"{year}.zip",
|
| 98 |
-
repo_type="dataset",
|
| 99 |
-
token=token,
|
| 100 |
-
local_dir="/tmp/impact",
|
| 101 |
-
)
|
| 102 |
-
|
| 103 |
-
# Embed in batches
|
| 104 |
-
BATCH = 64
|
| 105 |
-
all_ids, all_vecs = [], []
|
| 106 |
-
|
| 107 |
-
def load_image(fn: str) -> Image.Image | None:
|
| 108 |
-
parts = fn.split("-D0")
|
| 109 |
-
if len(parts) < 2:
|
| 110 |
-
return None
|
| 111 |
-
inner_path = f"{year}/{parts[0]}/{fn}"
|
| 112 |
-
try:
|
| 113 |
-
with zipfile.ZipFile(zip_path) as z:
|
| 114 |
-
with z.open(inner_path) as f:
|
| 115 |
-
return Image.open(io.BytesIO(f.read())).convert("RGB")
|
| 116 |
-
except Exception:
|
| 117 |
-
return None
|
| 118 |
-
|
| 119 |
-
batch_imgs, batch_ids = [], []
|
| 120 |
-
|
| 121 |
-
def flush_batch():
|
| 122 |
-
if not batch_imgs:
|
| 123 |
-
return
|
| 124 |
-
tensors = torch.stack([preprocess(im) for im in batch_imgs]).to(device)
|
| 125 |
-
with torch.no_grad():
|
| 126 |
-
feats = model.encode_image(tensors)
|
| 127 |
-
feats = feats / feats.norm(dim=-1, keepdim=True)
|
| 128 |
-
all_vecs.append(feats.cpu().numpy())
|
| 129 |
-
all_ids.extend(batch_ids)
|
| 130 |
-
batch_imgs.clear()
|
| 131 |
-
batch_ids.clear()
|
| 132 |
-
|
| 133 |
-
for fig in tqdm(figures, desc="Embedding"):
|
| 134 |
-
img = load_image(fig["filename"])
|
| 135 |
-
if img is None:
|
| 136 |
-
continue
|
| 137 |
-
batch_imgs.append(img)
|
| 138 |
-
pid = fig["patent_id"].lstrip("D").zfill(7)
|
| 139 |
-
batch_ids.append(f"D{pid}_{fig['figure_num']}")
|
| 140 |
-
if len(batch_imgs) >= BATCH:
|
| 141 |
-
flush_batch()
|
| 142 |
-
flush_batch()
|
| 143 |
-
|
| 144 |
-
vecs = np.vstack(all_vecs).astype(np.float32)
|
| 145 |
-
print(f"Embedded {len(all_ids):,} figures, shape {vecs.shape}")
|
| 146 |
-
|
| 147 |
-
# Save parquet and push to Hub
|
| 148 |
-
df = pd.DataFrame({"figure_id": all_ids, "embedding": list(vecs)})
|
| 149 |
-
out = f"/tmp/embeddings_{year}_{model_name.lower().replace('-','')}.parquet"
|
| 150 |
-
df.to_parquet(out, index=False)
|
| 151 |
-
|
| 152 |
-
out_file = f"embeddings_{year}_vitl14.parquet"
|
| 153 |
-
api = HfApi(token=token)
|
| 154 |
-
api.upload_file(
|
| 155 |
-
path_or_fileobj=out,
|
| 156 |
-
path_in_repo=out_file,
|
| 157 |
-
repo_id="midah/patent-wireframes",
|
| 158 |
-
repo_type="dataset",
|
| 159 |
-
)
|
| 160 |
-
print(f"Pushed → hf://datasets/midah/patent-wireframes/{out_file}")
|
| 161 |
-
return {"n_embedded": len(all_ids), "shape": list(vecs.shape)}
|
| 162 |
-
|
| 163 |
-
|
| 164 |
-
@app.local_entrypoint()
|
| 165 |
-
def main():
|
| 166 |
-
result = embed_year.remote("2022")
|
| 167 |
-
print("Done:", result)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|