from __future__ import annotations import argparse import json import math from collections import Counter, defaultdict from pathlib import Path from statistics import median from typing import Any, Iterable from src.data.io_utils import read_jsonl, write_csv from src.models.encoder_verifier import load_tokenizer LABEL_ORDER = ["SUPPORTS", "REFUTES", "NEI", "CONFLICTING"] DEFAULT_CLAIMS = [ Path("data_processed/averitec/claims_train_inner.jsonl"), Path("data_processed/averitec/claims_dev_inner.jsonl"), Path("data_processed/averitec/claims_local_test.jsonl"), ] DEFAULT_CANDIDATE_POOLS = [ Path("outputs/retrieval/averitec/candidate_pool_train_inner.jsonl"), Path("outputs/retrieval/averitec/candidate_pool_dev_inner.jsonl"), Path("outputs/retrieval/averitec/candidate_pool_local_test.jsonl"), ] DEFAULT_VERIFIER_INPUTS = [ Path("outputs/verifier_inputs/averitec/train_inner_top10_qa.jsonl"), Path("outputs/verifier_inputs/averitec/dev_inner_top10_qa.jsonl"), Path("outputs/verifier_inputs/averitec/local_test_top10_qa.jsonl"), ] DEFAULT_PREDICTIONS = Path( "outputs/baselines/averitec/encoder_verifier/" "answerdotai__ModernBERT-large_top10_qa_weighted_sampler/seed_13/predictions_test.jsonl" ) DEFAULT_METRICS = Path( "outputs/baselines/averitec/encoder_verifier/" "answerdotai__ModernBERT-large_top10_qa_weighted_sampler/seed_13/metrics.json" ) def existing(paths: Iterable[Path]) -> list[Path]: return [path for path in paths if path.exists()] def infer_split(path: Path, row: dict[str, Any] | None = None) -> str: if row and row.get("split"): return str(row["split"]) stem = path.stem if stem.startswith("claims_"): return stem.removeprefix("claims_") if stem.startswith("candidate_pool_"): return stem.removeprefix("candidate_pool_") for split in ["train_inner", "dev_inner", "local_test", "hidden_test", "train", "dev", "test"]: if split in stem: return split return stem def pct(numerator: int | float, denominator: int | float) -> float: if not denominator: return 0.0 return round(float(numerator) / float(denominator) * 100.0, 6) def as_bool(value: Any) -> bool: return bool(value) if value is not None else False def safe_float(value: Any) -> float: try: if value is None: return 0.0 numeric = float(value) if math.isnan(numeric) or math.isinf(numeric): return 0.0 return numeric except (TypeError, ValueError): return 0.0 def percentile(values: list[int], q: float) -> float: if not values: return 0.0 ordered = sorted(values) if len(ordered) == 1: return float(ordered[0]) position = (len(ordered) - 1) * q lower = math.floor(position) upper = math.ceil(position) if lower == upper: return float(ordered[int(position)]) fraction = position - lower return float(ordered[lower] * (1 - fraction) + ordered[upper] * fraction) def load_claims(paths: list[Path]) -> tuple[dict[str, dict[str, Any]], list[dict[str, Any]]]: claims_by_id: dict[str, dict[str, Any]] = {} rows: list[dict[str, Any]] = [] for path in paths: for row in read_jsonl(path): claim_id = str(row.get("claim_id") or row.get("id") or "") if not claim_id: continue row = dict(row) row.setdefault("split", infer_split(path, row)) claims_by_id[claim_id] = row rows.append(row) return claims_by_id, rows def label_distribution_rows(claim_rows: list[dict[str, Any]]) -> list[dict[str, Any]]: grouped: dict[str, list[dict[str, Any]]] = defaultdict(list) for row in claim_rows: grouped[str(row.get("split") or "unknown")].append(row) output: list[dict[str, Any]] = [] for split in sorted(grouped): rows = grouped[split] counts = Counter(str(row.get("label") or "UNLABELED") for row in rows) labels = list(LABEL_ORDER) labels.extend(label for label in sorted(counts) if label not in labels) total = len(rows) out: dict[str, Any] = {"Split": split, "Total": total} for label in labels: out[label] = counts.get(label, 0) for label in labels: out[f"{label}_pct"] = pct(counts.get(label, 0), total) output.append(out) return output def retrieval_by_label_rows( candidate_paths: list[Path], claims_by_id: dict[str, dict[str, Any]], ) -> list[dict[str, Any]]: grouped: dict[tuple[str, str], list[dict[str, Any]]] = defaultdict(list) for path in candidate_paths: fallback_split = infer_split(path) for row in read_jsonl(path): query_id = str(row.get("query_id") or row.get("id") or "") claim = claims_by_id.get(query_id, {}) label = str(claim.get("label") or row.get("label") or "UNLABELED") split = str(row.get("split") or claim.get("split") or fallback_split) grouped[(split, label)].append(row) output: list[dict[str, Any]] = [] for split, label in sorted(grouped, key=lambda key: (key[0], LABEL_ORDER.index(key[1]) if key[1] in LABEL_ORDER else 99, key[1])): rows = grouped[(split, label)] count = len(rows) r5 = sum(1 for row in rows if as_bool(row.get("metrics", {}).get("gold_at_5"))) r10 = sum(1 for row in rows if as_bool(row.get("metrics", {}).get("gold_at_10"))) r30 = sum(1 for row in rows if as_bool(row.get("metrics", {}).get("gold_at_30"))) has_gold = sum(1 for row in rows if row.get("metrics", {}).get("has_gold") is not False) mrr_values = [safe_float(row.get("metrics", {}).get("mrr")) for row in rows] ndcg_values = [safe_float(row.get("metrics", {}).get("ndcg_at_10")) for row in rows] output.append( { "Split": split, "Label": label, "Count": count, "Has_gold_count": has_gold, "R@5": round(r5 / max(1, count), 6), "R@10": round(r10 / max(1, count), 6), "R@30": round(r30 / max(1, count), 6), "MRR": round(sum(mrr_values) / max(1, count), 6), "nDCG@10": round(sum(ndcg_values) / max(1, count), 6), } ) return output def parse_top_k(path: Path, rows: list[dict[str, Any]]) -> str: for row in rows: if row.get("top_k") is not None: return str(row["top_k"]) stem = path.stem for part in stem.split("_"): if part.startswith("top") and part[3:].isdigit(): return part[3:] return "" def tokenize_lengths(tokenizer: Any, texts: list[str]) -> list[int]: lengths: list[int] = [] for text in texts: lengths.append(len(tokenizer(str(text), add_special_tokens=True, truncation=False)["input_ids"])) return lengths def truncation_report_rows( verifier_paths: list[Path], max_lengths: list[int], tokenizer_model: str, ) -> list[dict[str, Any]]: try: tokenizer = load_tokenizer(tokenizer_model) tokenizer_status = "ok" except Exception as exc: # pragma: no cover - exercised only when local model cache is missing. tokenizer = None tokenizer_status = f"fallback_whitespace:{type(exc).__name__}" grouped: dict[tuple[str, str, str, str], list[int]] = defaultdict(list) for path in verifier_paths: rows = read_jsonl(path) fallback_split = infer_split(path) top_k = parse_top_k(path, rows) for row in rows: split = str(row.get("split") or fallback_split) label = str(row.get("label") or "UNLABELED") input_format = str(row.get("input_format") or ("qa" if "_qa" in path.stem else "flat")) text = str(row.get("input_text") or "") if tokenizer is None: length = len(text.split()) else: length = tokenize_lengths(tokenizer, [text])[0] grouped[(split, label, input_format, top_k)].append(length) output: list[dict[str, Any]] = [] for split, label, input_format, top_k in sorted( grouped, key=lambda key: (key[0], LABEL_ORDER.index(key[1]) if key[1] in LABEL_ORDER else 99, key[1], key[2], key[3]), ): values = grouped[(split, label, input_format, top_k)] for max_length in max_lengths: truncated = sum(1 for value in values if value > max_length) output.append( { "Split": split, "Label": label, "Format": input_format, "Top-k": top_k, "Max length": max_length, "Count": len(values), "p50 tokens": round(float(median(values)), 3) if values else 0.0, "p90": round(percentile(values, 0.90), 3), "p95": round(percentile(values, 0.95), 3), "max_tokens": max(values) if values else 0, "% truncated": pct(truncated, len(values)), "tokenizer": tokenizer_model, "tokenizer_status": tokenizer_status, } ) return output def prediction_distribution_rows(prediction_path: Path) -> list[dict[str, Any]]: predictions = read_jsonl(prediction_path) matrix: Counter[tuple[str, str]] = Counter() gold_counts: Counter[str] = Counter() pred_counts: Counter[str] = Counter() correct_by_gold: Counter[str] = Counter() split_counts: Counter[str] = Counter() for row in predictions: split = str(row.get("split") or "unknown") gold = str(row.get("gold") or row.get("label") or "UNLABELED") pred = str(row.get("prediction") or "UNPREDICTED") key_gold = f"{split}:{gold}" key_pred = f"{split}:{pred}" matrix[(split, gold, pred)] += 1 gold_counts[key_gold] += 1 pred_counts[key_pred] += 1 split_counts[split] += 1 if gold == pred: correct_by_gold[key_gold] += 1 output: list[dict[str, Any]] = [] labels = list(LABEL_ORDER) seen_labels = sorted({gold for _, gold, _ in matrix} | {pred for _, _, pred in matrix}) labels.extend(label for label in seen_labels if label not in labels) for split in sorted(split_counts): for gold in labels: total_gold = gold_counts.get(f"{split}:{gold}", 0) if not total_gold: continue for pred in labels: count = matrix.get((split, gold, pred), 0) output.append( { "Split": split, "Gold": gold, "Prediction": pred, "Count": count, "Pct_of_gold": pct(count, total_gold), "Gold_count": total_gold, "Predicted_label_count": pred_counts.get(f"{split}:{pred}", 0), "Gold_recall_pct": pct(correct_by_gold.get(f"{split}:{gold}", 0), total_gold), } ) return output def compact_text(value: Any, limit: int = 360) -> str: text = " ".join(str(value or "").split()) if len(text) <= limit: return text return text[: limit - 3].rstrip() + "..." def error_case_rows( prediction_path: Path, claims_by_id: dict[str, dict[str, Any]], verifier_paths: list[Path], candidate_paths: list[Path], max_cases: int, ) -> list[dict[str, Any]]: verifier_by_id: dict[str, dict[str, Any]] = {} for path in verifier_paths: for row in read_jsonl(path): verifier_by_id[str(row.get("id") or "")] = row candidates_by_id: dict[str, dict[str, Any]] = {} for path in candidate_paths: for row in read_jsonl(path): candidates_by_id[str(row.get("query_id") or "")] = row errors: list[dict[str, Any]] = [] for row in read_jsonl(prediction_path): gold = str(row.get("gold") or row.get("label") or "") pred = str(row.get("prediction") or "") if gold == pred: continue claim_id = str(row.get("id") or "") claim = claims_by_id.get(claim_id, {}) verifier = verifier_by_id.get(claim_id, {}) candidate_row = candidates_by_id.get(claim_id, {}) evidence = verifier.get("evidence") or [] top_evidence = evidence[0] if evidence else {} metrics = candidate_row.get("metrics") if isinstance(candidate_row.get("metrics"), dict) else {} probabilities = row.get("probabilities") if isinstance(row.get("probabilities"), dict) else {} errors.append( { "id": claim_id, "split": row.get("split") or claim.get("split") or verifier.get("split"), "gold": gold, "prediction": pred, "confidence": row.get("confidence"), "gold_probability": probabilities.get(gold), "pred_probability": probabilities.get(pred), "claim": compact_text(row.get("claim") or claim.get("claim")), "gold_at_5": metrics.get("gold_at_5"), "gold_at_10": metrics.get("gold_at_10"), "gold_at_30": metrics.get("gold_at_30"), "mrr": metrics.get("mrr"), "ndcg_at_10": metrics.get("ndcg_at_10"), "top_evidence_id": top_evidence.get("candidate_id"), "top_evidence_is_gold": top_evidence.get("is_gold"), "top_question": compact_text(top_evidence.get("question"), limit=220), "top_answer": compact_text(top_evidence.get("answer"), limit=220), "top_evidence": compact_text(top_evidence.get("text"), limit=360), "evidence_ids": "|".join(str(item) for item in row.get("evidence_ids", [])), } ) errors.sort(key=lambda item: (item.get("gold") != "CONFLICTING", item.get("gold") != "NEI", -safe_float(item.get("confidence")))) return errors[:max_cases] def load_metrics(path: Path) -> dict[str, Any]: if not path.exists(): return {} return json.loads(path.read_text(encoding="utf-8")) def gold_qa_upper_bound_rows(metrics_path: Path) -> list[dict[str, Any]]: metrics = load_metrics(metrics_path) test = metrics.get("test") if isinstance(metrics.get("test"), dict) else {} per_class = test.get("per_class") if isinstance(test.get("per_class"), dict) else {} return [ { "Method": "ModernBERT top10 retrieved QA", "Evidence input": "retrieved QA", "Status": "DONE", "Acc": test.get("accuracy", ""), "Macro-F1": test.get("macro_f1", ""), "NEI F1": per_class.get("NEI", {}).get("f1", ""), "CONFLICTING F1": per_class.get("CONFLICTING", {}).get("f1", ""), "Metrics file": str(metrics_path), "Next action": "", }, { "Method": "ModernBERT gold QA upper-bound", "Evidence input": "gold QA", "Status": "PENDING_NEEDS_RUN", "Acc": "", "Macro-F1": "", "NEI F1": "", "CONFLICTING F1": "", "Metrics file": "", "Next action": "build_gold_qa_verifier_inputs_then_train_or_evaluate_as_diagnostic", }, ] def main() -> None: parser = argparse.ArgumentParser() parser.add_argument("--claims", type=Path, nargs="*", default=existing(DEFAULT_CLAIMS)) parser.add_argument("--candidate-pool", type=Path, nargs="*", default=existing(DEFAULT_CANDIDATE_POOLS)) parser.add_argument("--predictions", type=Path, default=DEFAULT_PREDICTIONS) parser.add_argument("--verifier-input", type=Path, nargs="*", default=existing(DEFAULT_VERIFIER_INPUTS)) parser.add_argument("--metrics", type=Path, default=DEFAULT_METRICS) parser.add_argument("--output-dir", type=Path, default=Path("outputs/analysis")) parser.add_argument("--tokenizer-model", default="answerdotai/ModernBERT-large") parser.add_argument("--max-lengths", type=int, nargs="*", default=[1024, 2048]) parser.add_argument("--max-error-cases", type=int, default=200) args = parser.parse_args() claims_by_id, claim_rows = load_claims(args.claims) label_rows = label_distribution_rows(claim_rows) retrieval_rows = retrieval_by_label_rows(args.candidate_pool, claims_by_id) truncation_rows = truncation_report_rows(args.verifier_input, args.max_lengths, args.tokenizer_model) prediction_rows = prediction_distribution_rows(args.predictions) error_rows = error_case_rows( args.predictions, claims_by_id, args.verifier_input, args.candidate_pool, args.max_error_cases, ) upper_bound_rows = gold_qa_upper_bound_rows(args.metrics) output_dir = args.output_dir outputs = { "label_distribution": output_dir / "averitec_label_distribution.csv", "retrieval_by_label": output_dir / "averitec_retrieval_by_label.csv", "input_truncation_report": output_dir / "averitec_input_truncation_report.csv", "prediction_distribution": output_dir / "averitec_prediction_distribution.csv", "error_cases": output_dir / "averitec_error_cases.csv", "gold_qa_upper_bound": output_dir / "averitec_gold_qa_upper_bound.csv", } write_csv(outputs["label_distribution"], label_rows) write_csv(outputs["retrieval_by_label"], retrieval_rows) write_csv(outputs["input_truncation_report"], truncation_rows) write_csv(outputs["prediction_distribution"], prediction_rows) write_csv(outputs["error_cases"], error_rows) write_csv(outputs["gold_qa_upper_bound"], upper_bound_rows) print("Wrote AVeriTeC diagnostic outputs:") for name, path in outputs.items(): print(f"- {name}: {path}") if __name__ == "__main__": main()