from __future__ import annotations import argparse from pathlib import Path from typing import Any from src.data.io_utils import read_jsonl, write_csv, write_jsonl from src.data.normalize_text import normalize_whitespace DATASET_SPECS: dict[str, dict[str, Any]] = { "healthver": { "protocol": "P6_pair_verification", "id_field": "pair_id", "splits": { "train": "data_processed/healthver/pairs_train.jsonl", "dev": "data_processed/healthver/pairs_dev.jsonl", "test": "data_processed/healthver/pairs_test.jsonl", }, "candidate_template": "outputs/retrieval/healthver/candidate_pool_{split}.jsonl", }, "vifactcheck": { "protocol": "P1_full_context_retrieval", "id_field": "claim_id", "splits": { "train": "data_processed/vifactcheck/claims_train.jsonl", "dev": "data_processed/vifactcheck/claims_dev.jsonl", "test": "data_processed/vifactcheck/claims_test.jsonl", }, "candidate_template": "outputs/retrieval/vifactcheck/candidate_pool_{split}.jsonl", }, "averitec": { "protocol": "P4_open_retrieval", "id_field": "claim_id", "qa_evidence": "data_processed/averitec/qa_evidence.jsonl", "splits": { "train_inner": "data_processed/averitec/claims_train_inner.jsonl", "dev_inner": "data_processed/averitec/claims_dev_inner.jsonl", "local_test": "data_processed/averitec/claims_local_test.jsonl", }, "candidate_template": "outputs/retrieval/averitec/candidate_pool_{split}.jsonl", }, } def candidate_summary(candidate: dict[str, Any]) -> dict[str, Any]: metadata = candidate.get("metadata") if isinstance(candidate.get("metadata"), dict) else {} return { "candidate_id": candidate.get("candidate_id"), "text": candidate.get("text", ""), "final_rank": candidate.get("final_rank"), "reranker_score": candidate.get("reranker_score"), "is_gold": candidate.get("is_gold"), "source_type": candidate.get("source_type"), "question": candidate.get("question") or metadata.get("question"), "answer": candidate.get("answer") or metadata.get("answer"), } def select_evidence(dataset: str, candidates: list[dict[str, Any]], top_k: int) -> list[dict[str, Any]]: selected = candidates[:top_k] if dataset != "healthver": return selected anchors = [row for row in candidates if row.get("source_type") == "paired_evidence"] if not anchors: return selected anchor = anchors[0] selected_ids = {anchor.get("candidate_id")} augmentations = [row for row in candidates if row.get("candidate_id") not in selected_ids] return [anchor] + augmentations[: max(0, top_k - 1)] def format_input_text(dataset: str, claim: str, evidence: list[dict[str, Any]], input_format: str = "flat") -> str: claim = normalize_whitespace(claim) if dataset == "vifactcheck": parts = [f"[STATEMENT] {claim}"] for idx, item in enumerate(evidence, start=1): parts.append(f"[CONTEXT_CHUNK_{idx}] {normalize_whitespace(item.get('text', ''))}") return "\n".join(parts) if dataset == "healthver": parts = [f"[CLAIM] {claim}"] aug_idx = 1 for item in evidence: text = normalize_whitespace(item.get("text", "")) if item.get("source_type") == "paired_evidence": parts.append(f"[EVIDENCE] {text}") else: parts.append(f"[AUGMENTED_EVIDENCE_{aug_idx}] {text}") aug_idx += 1 return "\n".join(parts) parts = [f"[CLAIM] {claim}"] if dataset == "averitec" and input_format == "qa": for idx, item in enumerate(evidence, start=1): question = normalize_whitespace(item.get("question", "")) answer = normalize_whitespace(item.get("answer", "")) text = normalize_whitespace(item.get("text", "")) if question: parts.append(f"[QUESTION_{idx}] {question}") if answer: parts.append(f"[ANSWER_{idx}] {answer}") parts.append(f"[EVIDENCE_{idx}] {text}") return "\n".join(parts) for idx, item in enumerate(evidence, start=1): parts.append(f"[EVIDENCE_{idx}] {normalize_whitespace(item.get('text', ''))}") return "\n".join(parts) def load_candidate_rows(path: Path) -> dict[str, dict[str, Any]]: rows: dict[str, dict[str, Any]] = {} for row in read_jsonl(path): rows[row["query_id"]] = row return rows def load_averitec_qa_by_evidence(path: Path) -> dict[str, dict[str, Any]]: rows: dict[str, dict[str, Any]] = {} if not path.exists(): return rows for row in read_jsonl(path): metadata = row.get("metadata") if isinstance(row.get("metadata"), dict) else {} evidence_id = metadata.get("evidence_id") if evidence_id: rows[str(evidence_id)] = row return rows def enrich_averitec_qa(candidates: list[dict[str, Any]], qa_by_evidence: dict[str, dict[str, Any]]) -> list[dict[str, Any]]: if not qa_by_evidence: return candidates enriched: list[dict[str, Any]] = [] for candidate in candidates: updated = dict(candidate) metadata = dict(updated.get("metadata") if isinstance(updated.get("metadata"), dict) else {}) qa_row = qa_by_evidence.get(str(updated.get("candidate_id"))) if qa_row: updated["question"] = qa_row.get("question") updated["answer"] = qa_row.get("answer") metadata.setdefault("question_id", qa_row.get("question_id")) metadata.setdefault("answer_type", (qa_row.get("metadata") or {}).get("answer_type")) metadata.setdefault("source_url", qa_row.get("source_url")) updated["metadata"] = metadata enriched.append(updated) return enriched def build_dataset_split( dataset: str, split: str, source_path: Path, candidate_path: Path, output_path: Path, top_k: int, protocol: str, id_field: str, input_format: str, qa_by_evidence: dict[str, dict[str, Any]] | None = None, ) -> dict[str, Any]: source_rows = read_jsonl(source_path) candidates_by_id = load_candidate_rows(candidate_path) output_rows: list[dict[str, Any]] = [] missing_candidates = 0 missing_labels = 0 anchor_missing = 0 for row in source_rows: query_id = row.get(id_field) or row.get("claim_id") label = row.get("label") if label is None: missing_labels += 1 continue candidate_row = candidates_by_id.get(query_id) if candidate_row is None: missing_candidates += 1 continue evidence = select_evidence(dataset, candidate_row.get("candidates", []), top_k=top_k) if dataset == "averitec" and input_format == "qa": evidence = enrich_averitec_qa(evidence, qa_by_evidence or {}) if dataset == "healthver" and not any(item.get("source_type") == "paired_evidence" for item in evidence): anchor_missing += 1 evidence_summaries = [candidate_summary(item) for item in evidence] output_rows.append( { "id": query_id, "dataset": dataset, "split": split, "claim": row.get("claim", ""), "label": label, "input_text": format_input_text(dataset, row.get("claim", ""), evidence, input_format=input_format), "evidence": evidence_summaries, "protocol": protocol, "top_k": top_k, "input_format": input_format, } ) write_jsonl(output_path, output_rows) return { "dataset": dataset, "split": split, "top_k": top_k, "input_format": input_format, "source_rows": len(source_rows), "output_rows": len(output_rows), "missing_labels": missing_labels, "missing_candidates": missing_candidates, "healthver_anchor_missing": anchor_missing, "output": str(output_path), } def build_dataset(dataset: str, top_k: int, output_root: Path, input_format: str) -> list[dict[str, Any]]: spec = DATASET_SPECS[dataset] rows: list[dict[str, Any]] = [] dataset_dir = output_root / dataset qa_by_evidence: dict[str, dict[str, Any]] = {} if dataset == "averitec" and input_format == "qa": qa_by_evidence = load_averitec_qa_by_evidence(Path(spec["qa_evidence"])) for split, source in spec["splits"].items(): source_path = Path(source) candidate_path = Path(spec["candidate_template"].format(split=split)) format_suffix = "_qa" if input_format == "qa" else "" output_path = dataset_dir / f"{split}_top{top_k}{format_suffix}.jsonl" rows.append( build_dataset_split( dataset=dataset, split=split, source_path=source_path, candidate_path=candidate_path, output_path=output_path, top_k=top_k, protocol=spec["protocol"], id_field=spec["id_field"], input_format=input_format, qa_by_evidence=qa_by_evidence, ) ) return rows def main() -> None: parser = argparse.ArgumentParser() parser.add_argument("--datasets", nargs="*", choices=sorted(DATASET_SPECS), default=sorted(DATASET_SPECS)) parser.add_argument("--top-k", type=int, action="append", required=True) parser.add_argument("--format", choices=["flat", "qa"], default="flat") parser.add_argument("--output-root", type=Path, default=Path("outputs/verifier_inputs")) parser.add_argument("--summary-output", type=Path, default=Path("outputs/stats/verifier_input_summary.csv")) args = parser.parse_args() summary_rows: list[dict[str, Any]] = [] for top_k in args.top_k: for dataset in args.datasets: summary_rows.extend( build_dataset(dataset, top_k=top_k, output_root=args.output_root, input_format=args.format) ) write_csv(args.summary_output, summary_rows) print(f"Wrote {len(summary_rows)} verifier input split summaries to {args.summary_output}") if __name__ == "__main__": main()