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Datasets:
mm1109
/
scRegNet

Tasks:
Other
Size:
10K<n<100K
Tags:
biology
gene-regulatory-networks
single-cell
glioblastoma
perturbation
grn-inference
License:
Dataset card Files
xet
 Community
scRegNet
File size: 2,282 Bytes
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{
  "Astrocyte": {
    "canonical_tfs": [
      "SOX9",
      "NFIA",
      "NFIB"
    ],
    "n_canonical": 3,
    "missing_from_gstar": []
  },
  "Endothel": {
    "canonical_tfs": [
      "FLI1",
      "ERG",
      "ETS1",
      "KLF2"
    ],
    "n_canonical": 4,
    "missing_from_gstar": []
  },
  "Excitatory neuron": {
    "canonical_tfs": [
      "NEUROD2",
      "NEUROD6",
      "TBR1"
    ],
    "n_canonical": 3,
    "missing_from_gstar": []
  },
  "Inhibitory neuron": {
    "canonical_tfs": [
      "DLX1",
      "DLX2",
      "DLX5"
    ],
    "n_canonical": 3,
    "missing_from_gstar": []
  },
  "Lymphocyte": {
    "canonical_tfs": [
      "IKZF1",
      "TCF7",
      "LEF1",
      "GATA3",
      "TBX21"
    ],
    "n_canonical": 5,
    "missing_from_gstar": []
  },
  "Malignant": {
    "canonical_tfs": [],
    "n_canonical": 0,
    "missing_from_gstar": []
  },
  "Malignant_MES": {
    "canonical_tfs": [
      "CEBPB",
      "RUNX1",
      "RUNX2",
      "FOSL2",
      "BHLHE40",
      "WWTR1"
    ],
    "n_canonical": 6,
    "missing_from_gstar": []
  },
  "Malignant_OPC": {
    "canonical_tfs": [
      "SOX2",
      "OLIG2",
      "ASCL1",
      "NKX2-2",
      "SOX10"
    ],
    "n_canonical": 5,
    "missing_from_gstar": []
  },
  "Malignant_AC": {
    "canonical_tfs": [
      "SOX9",
      "NFIA",
      "NFIB",
      "HES1",
      "HEY1"
    ],
    "n_canonical": 5,
    "missing_from_gstar": []
  },
  "Malignant_NPC": {
    "canonical_tfs": [
      "SOX4",
      "SOX11",
      "NEUROD1",
      "NEUROG2"
    ],
    "n_canonical": 4,
    "missing_from_gstar": []
  },
  "OPC": {
    "canonical_tfs": [
      "OLIG2",
      "SOX10",
      "NKX2-2"
    ],
    "n_canonical": 3,
    "missing_from_gstar": []
  },
  "Oligodendrocyte": {
    "canonical_tfs": [
      "SOX10",
      "MYRF",
      "OLIG1",
      "OLIG2"
    ],
    "n_canonical": 4,
    "missing_from_gstar": []
  },
  "Other": {
    "canonical_tfs": [],
    "n_canonical": 0,
    "missing_from_gstar": []
  },
  "Pericyte": {
    "canonical_tfs": [
      "NOTCH3"
    ],
    "n_canonical": 1,
    "missing_from_gstar": []
  },
  "TAM": {
    "canonical_tfs": [
      "SPI1",
      "CEBPB",
      "IRF8",
      "MAFB"
    ],
    "n_canonical": 4,
    "missing_from_gstar": []
  }
}