Datasets:
File size: 2,540 Bytes
5e00ffa | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 | {
"method_runtimes_sec": {
"correlation": {
"layer_a_chipatlas_sec": 19.242124,
"layer_b_curated_sec": 0.871538,
"layer_c_canonical_sec": 0.197274,
"layer_d_k562_sec": 0.694737,
"total_sec": 21.005673
},
"deepsem": {
"layer_a_chipatlas_sec": 1.377161,
"layer_b_curated_sec": 0.08245,
"layer_c_canonical_sec": 0.015056,
"layer_d_k562_sec": 0.074125,
"total_sec": 1.548792
},
"geneformer_attn": {
"layer_a_chipatlas_sec": 8.31889,
"layer_b_curated_sec": 0.423055,
"layer_c_canonical_sec": 0.085655,
"layer_d_k562_sec": 0.445306,
"total_sec": 9.272906
},
"genie3": {
"layer_a_chipatlas_sec": 17.806579,
"layer_b_curated_sec": 0.798014,
"layer_c_canonical_sec": 0.180552,
"layer_d_k562_sec": 0.650593,
"total_sec": 19.435738
},
"grnboost2": {
"layer_a_chipatlas_sec": 14.034096,
"layer_b_curated_sec": 0.646535,
"layer_c_canonical_sec": 0.142509,
"layer_d_k562_sec": 0.622533,
"total_sec": 15.445673
},
"inferelator": {
"layer_a_chipatlas_sec": 5.433204,
"layer_b_curated_sec": 0.296585,
"layer_c_canonical_sec": 0.058108,
"layer_d_k562_sec": 0.50169,
"total_sec": 6.289587
},
"random_null": {
"layer_a_chipatlas_sec": 13.758648,
"layer_b_curated_sec": 0.728264,
"layer_c_canonical_sec": 0.154618,
"layer_d_k562_sec": 0.66293,
"total_sec": 15.30446
},
"scenic": {
"layer_a_chipatlas_sec": 0.528207,
"layer_b_curated_sec": 0.041938,
"layer_c_canonical_sec": 0.006377,
"layer_d_k562_sec": 0.073127,
"total_sec": 0.649649
},
"scnet": {
"layer_a_chipatlas_sec": 12.46582,
"layer_b_curated_sec": 0.73204,
"layer_c_canonical_sec": 0.137382,
"layer_d_k562_sec": 0.689521,
"total_sec": 14.024763
},
"scregnet_geneformer": {
"layer_a_chipatlas_sec": 12.422738,
"layer_b_curated_sec": 0.718298,
"layer_c_canonical_sec": 0.137697,
"layer_d_k562_sec": 0.68274,
"total_sec": 13.961473
},
"scregnet_hgfb": {
"layer_a_chipatlas_sec": 12.635231,
"layer_b_curated_sec": 0.715656,
"layer_c_canonical_sec": 0.137819,
"layer_d_k562_sec": 0.682455,
"total_sec": 14.171161
}
},
"total_experiment_sec": 143.088647,
"notes": "Method runtime totals sum Layer A/B/C/D times only; all methods were evaluated sequentially on the same hardware."
} |