Upload results/experiments/exp_1/summary.json with huggingface_hub

results/experiments/exp_1/summary.json

@@ -2,7 +2,8 @@
   "correlation": {
     "n_edges": 889350,
     "n_tfs": 1617,
-    "chipatlas_median_fe": 0.855,
+    "chipatlas_median_fe": 0.861,
+    "k562_layer_d_median_fe": 0.0,
     "dorothea_mean_recovery": 0.00103,
     "trrust_mean_recovery": 0.00054,
     "canonical_recovered": 0,
@@ -12,7 +13,8 @@
   "deepsem": {
     "n_edges": 89950,
     "n_tfs": 342,
-    "chipatlas_median_fe": 0.893,
+    "chipatlas_median_fe": 1.107,
+    "k562_layer_d_median_fe": 0.0,
     "dorothea_mean_recovery": 0.00307,
     "trrust_mean_recovery": 0.0009,
     "canonical_recovered": 2,
@@ -22,7 +24,8 @@
   "geneformer_attn": {
     "n_edges": 563700,
     "n_tfs": 1372,
-    "chipatlas_median_fe": 0.893,
+    "chipatlas_median_fe": 0.761,
+    "k562_layer_d_median_fe": 0.0,
     "dorothea_mean_recovery": 0.00126,
     "trrust_mean_recovery": 0.00041,
     "canonical_recovered": 3,
@@ -32,7 +35,8 @@
   "genie3": {
     "n_edges": 811450,
     "n_tfs": 1558,
-    "chipatlas_median_fe": 1.017,
+    "chipatlas_median_fe": 0.974,
+    "k562_layer_d_median_fe": 0.0,
     "dorothea_mean_recovery": 0.00141,
     "trrust_mean_recovery": 0.00076,
     "canonical_recovered": 5,
@@ -42,7 +46,8 @@
   "grnboost2": {
     "n_edges": 646164,
     "n_tfs": 1556,
-    "chipatlas_median_fe": 1.086,
+    "chipatlas_median_fe": 1.33,
+    "k562_layer_d_median_fe": 0.0,
     "dorothea_mean_recovery": 0.00213,
     "trrust_mean_recovery": 0.00081,
     "canonical_recovered": 4,
@@ -52,17 +57,30 @@
   "inferelator": {
     "n_edges": 364901,
     "n_tfs": 1558,
-    "chipatlas_median_fe": 1.111,
+    "chipatlas_median_fe": 1.265,
+    "k562_layer_d_median_fe": 0.0,
     "dorothea_mean_recovery": 0.00219,
     "trrust_mean_recovery": 0.00057,
     "canonical_recovered": 4,
     "canonical_total": 30,
     "canonical_fraction": 0.133
   },
+  "random_null": {
+    "n_edges": 889350,
+    "n_tfs": 1617,
+    "chipatlas_median_fe": 0.949,
+    "k562_layer_d_median_fe": 0.0,
+    "dorothea_mean_recovery": 0.00046,
+    "trrust_mean_recovery": 0.00022,
+    "canonical_recovered": 0,
+    "canonical_total": 30,
+    "canonical_fraction": 0.0
+  },
   "scenic": {
     "n_edges": 28457,
     "n_tfs": 644,
-    "chipatlas_median_fe": 0.889,
+    "chipatlas_median_fe": 1.228,
+    "k562_layer_d_median_fe": 0.0,
     "dorothea_mean_recovery": 0.00773,
     "trrust_mean_recovery": 0.0037,
     "canonical_recovered": 0,
@@ -72,7 +90,8 @@
   "scnet": {
     "n_edges": 889350,
     "n_tfs": 1617,
-    "chipatlas_median_fe": 0.924,
+    "chipatlas_median_fe": 1.107,
+    "k562_layer_d_median_fe": 0.0,
     "dorothea_mean_recovery": 0.0019,
     "trrust_mean_recovery": 0.00087,
     "canonical_recovered": 0,
@@ -82,21 +101,23 @@
   "scregnet_geneformer": {
     "n_edges": 889350,
     "n_tfs": 1617,
-    "chipatlas_median_fe": 0.994,
-    "dorothea_mean_recovery": 0.00211,
-    "trrust_mean_recovery": 0.00034,
-    "canonical_recovered": 4,
+    "chipatlas_median_fe": 0.408,
+    "k562_layer_d_median_fe": 0.0,
+    "dorothea_mean_recovery": 0.00065,
+    "trrust_mean_recovery": 0.00042,
+    "canonical_recovered": 1,
     "canonical_total": 30,
-    "canonical_fraction": 0.133
+    "canonical_fraction": 0.033
   },
   "scregnet_hgfb": {
     "n_edges": 889350,
     "n_tfs": 1617,
-    "chipatlas_median_fe": 1.033,
-    "dorothea_mean_recovery": 0.00284,
-    "trrust_mean_recovery": 0.0004,
-    "canonical_recovered": 3,
+    "chipatlas_median_fe": 0.717,
+    "k562_layer_d_median_fe": 0.0,
+    "dorothea_mean_recovery": 0.00117,
+    "trrust_mean_recovery": 0.00076,
+    "canonical_recovered": 1,
     "canonical_total": 30,
-    "canonical_fraction": 0.1
+    "canonical_fraction": 0.033
   }
 }