Datasets:
Upload results/stage_c/summary.json with huggingface_hub
Browse files- results/stage_c/summary.json +1262 -24
results/stage_c/summary.json
CHANGED
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@@ -1,4 +1,6 @@
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{
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"n_genes": 18716,
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"n_tfs": 1617,
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"n_contexts": 17,
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@@ -35,66 +37,1302 @@
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"n_edges": 1374450,
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"n_celltypes": 17,
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"n_regulators": 1617,
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| 38 |
-
"elapsed_sec":
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"score_stats": {
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| 40 |
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"mean": 0.
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| 41 |
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"median": 0.
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| 42 |
-
"std": 0.
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}
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},
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"scgpt": {
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"n_edges": 1374450,
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"n_celltypes": 17,
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"n_regulators": 1617,
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-
"elapsed_sec":
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"score_stats": {
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"mean": 0.
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"median": 0.
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"std": 0.
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}
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},
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"scprint": {
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"n_edges": 1374450,
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"n_celltypes": 17,
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"n_regulators": 1617,
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-
"elapsed_sec":
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"score_stats": {
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"mean": 0.
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"median": 0.
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-
"std": 0.
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| 65 |
}
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| 66 |
},
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| 67 |
"pinnacle": {
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| 68 |
"n_edges": 1374450,
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| 69 |
"n_celltypes": 17,
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| 70 |
"n_regulators": 1617,
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| 71 |
-
"elapsed_sec":
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| 72 |
"score_stats": {
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| 73 |
-
"mean": 0.
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| 74 |
-
"median": 0.
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| 75 |
-
"std": 0.
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|
| 76 |
}
|
| 77 |
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|
| 78 |
"node2vec": {
|
| 79 |
"n_edges": 1374450,
|
| 80 |
"n_celltypes": 17,
|
| 81 |
"n_regulators": 1617,
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| 82 |
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| 83 |
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| 84 |
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"mean": 0.
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| 85 |
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| 86 |
-
"std": 0.
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| 87 |
}
|
| 88 |
},
|
| 89 |
"hgfb": {
|
| 90 |
"n_edges": 1374450,
|
| 91 |
"n_celltypes": 17,
|
| 92 |
"n_regulators": 1617,
|
| 93 |
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"elapsed_sec":
|
| 94 |
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|
| 95 |
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"mean": 0.
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| 96 |
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"median": 0.
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| 97 |
-
"std": 0.
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|
| 98 |
}
|
| 99 |
}
|
| 100 |
}
|
|
|
|
| 1 |
{
|
| 2 |
+
"gating_method": "threshold",
|
| 3 |
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"threshold_percentile": 25,
|
| 4 |
"n_genes": 18716,
|
| 5 |
"n_tfs": 1617,
|
| 6 |
"n_contexts": 17,
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|
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|
| 37 |
"n_edges": 1374450,
|
| 38 |
"n_celltypes": 17,
|
| 39 |
"n_regulators": 1617,
|
| 40 |
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"elapsed_sec": 40.6,
|
| 41 |
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|
| 42 |
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"mean": 0.6786,
|
| 43 |
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|
| 44 |
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"std": 0.4536
|
| 45 |
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},
|
| 46 |
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"gate_stats": {
|
| 47 |
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"Astrocyte": {
|
| 48 |
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"tau": 0.01095,
|
| 49 |
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"tfs_passing": 1105,
|
| 50 |
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"genes_passing": 12977,
|
| 51 |
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"pairs_surviving": 14339585,
|
| 52 |
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|
| 53 |
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"diagnostics": {
|
| 54 |
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"base_threshold_jaccard": 0.2576,
|
| 55 |
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"base_multiplicative_jaccard": 0.014,
|
| 56 |
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"rank_corr_survivors": 1.0
|
| 57 |
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}
|
| 58 |
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},
|
| 59 |
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"Endothel": {
|
| 60 |
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"tau": 0.011552,
|
| 61 |
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"tfs_passing": 1093,
|
| 62 |
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"genes_passing": 12823,
|
| 63 |
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"pairs_surviving": 14015539,
|
| 64 |
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|
| 65 |
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|
| 66 |
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"base_threshold_jaccard": 0.2641,
|
| 67 |
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"base_multiplicative_jaccard": 0.0078,
|
| 68 |
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"rank_corr_survivors": 1.0
|
| 69 |
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}
|
| 70 |
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},
|
| 71 |
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"Excitatory neuron": {
|
| 72 |
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"tau": 0.011817,
|
| 73 |
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"tfs_passing": 1092,
|
| 74 |
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"genes_passing": 13316,
|
| 75 |
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"pairs_surviving": 14541072,
|
| 76 |
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"survival_rate": 0.4805,
|
| 77 |
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"diagnostics": {
|
| 78 |
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"base_threshold_jaccard": 0.2269,
|
| 79 |
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"base_multiplicative_jaccard": 0.0151,
|
| 80 |
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"rank_corr_survivors": 1.0
|
| 81 |
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}
|
| 82 |
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},
|
| 83 |
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"Inhibitory neuron": {
|
| 84 |
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"tau": 0.014047,
|
| 85 |
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"tfs_passing": 1077,
|
| 86 |
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"genes_passing": 13076,
|
| 87 |
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"pairs_surviving": 14082852,
|
| 88 |
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"survival_rate": 0.4653,
|
| 89 |
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"diagnostics": {
|
| 90 |
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"base_threshold_jaccard": 0.2242,
|
| 91 |
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"base_multiplicative_jaccard": 0.0153,
|
| 92 |
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"rank_corr_survivors": 1.0
|
| 93 |
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}
|
| 94 |
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},
|
| 95 |
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"Lymphocyte": {
|
| 96 |
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"tau": 0.008424,
|
| 97 |
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"tfs_passing": 1038,
|
| 98 |
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"genes_passing": 12482,
|
| 99 |
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"pairs_surviving": 12956316,
|
| 100 |
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|
| 101 |
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"diagnostics": {
|
| 102 |
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|
| 103 |
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"base_multiplicative_jaccard": 0.0057,
|
| 104 |
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"rank_corr_survivors": 1.0
|
| 105 |
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}
|
| 106 |
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},
|
| 107 |
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"Malignant": {
|
| 108 |
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"tau": 0.010316,
|
| 109 |
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"tfs_passing": 1182,
|
| 110 |
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"genes_passing": 13560,
|
| 111 |
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"pairs_surviving": 16027920,
|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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"base_multiplicative_jaccard": 0.0126,
|
| 116 |
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"rank_corr_survivors": 1.0
|
| 117 |
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}
|
| 118 |
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},
|
| 119 |
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"Neftel_AC": {
|
| 120 |
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"tau": 0.010261,
|
| 121 |
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"tfs_passing": 1171,
|
| 122 |
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"genes_passing": 13386,
|
| 123 |
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"pairs_surviving": 15675006,
|
| 124 |
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"survival_rate": 0.5179,
|
| 125 |
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|
| 126 |
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"base_threshold_jaccard": 0.2755,
|
| 127 |
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"base_multiplicative_jaccard": 0.0127,
|
| 128 |
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"rank_corr_survivors": 1.0
|
| 129 |
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}
|
| 130 |
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},
|
| 131 |
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"Neftel_MES1": {
|
| 132 |
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"tau": 0.010769,
|
| 133 |
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"tfs_passing": 1143,
|
| 134 |
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"genes_passing": 13236,
|
| 135 |
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|
| 136 |
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|
| 137 |
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|
| 138 |
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|
| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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},
|
| 143 |
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"Neftel_MES2": {
|
| 144 |
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"tau": 0.010276,
|
| 145 |
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"tfs_passing": 1156,
|
| 146 |
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"genes_passing": 13201,
|
| 147 |
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|
| 148 |
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|
| 149 |
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|
| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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}
|
| 154 |
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},
|
| 155 |
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"Neftel_NPC1": {
|
| 156 |
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"tau": 0.010832,
|
| 157 |
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"tfs_passing": 1176,
|
| 158 |
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"genes_passing": 13278,
|
| 159 |
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"pairs_surviving": 15614928,
|
| 160 |
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|
| 161 |
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"diagnostics": {
|
| 162 |
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"base_threshold_jaccard": 0.2748,
|
| 163 |
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"base_multiplicative_jaccard": 0.0117,
|
| 164 |
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"rank_corr_survivors": 1.0
|
| 165 |
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}
|
| 166 |
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},
|
| 167 |
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"Neftel_NPC2": {
|
| 168 |
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"tau": 0.013478,
|
| 169 |
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"tfs_passing": 1160,
|
| 170 |
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"genes_passing": 13287,
|
| 171 |
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|
| 172 |
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|
| 173 |
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|
| 174 |
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|
| 175 |
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"base_multiplicative_jaccard": 0.0166,
|
| 176 |
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|
| 177 |
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}
|
| 178 |
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},
|
| 179 |
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"Neftel_OPC": {
|
| 180 |
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"tau": 0.011741,
|
| 181 |
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"tfs_passing": 1172,
|
| 182 |
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"genes_passing": 13381,
|
| 183 |
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|
| 184 |
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|
| 185 |
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|
| 186 |
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|
| 187 |
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| 188 |
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|
| 189 |
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}
|
| 190 |
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},
|
| 191 |
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"OPC": {
|
| 192 |
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"tau": 0.009957,
|
| 193 |
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"tfs_passing": 1107,
|
| 194 |
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|
| 195 |
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|
| 196 |
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| 197 |
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|
| 198 |
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| 199 |
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|
| 200 |
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|
| 201 |
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}
|
| 202 |
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},
|
| 203 |
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"Oligodendrocyte": {
|
| 204 |
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"tau": 0.004866,
|
| 205 |
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"tfs_passing": 1117,
|
| 206 |
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"genes_passing": 13147,
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| 210 |
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| 1215 |
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| 1240 |
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| 1250 |
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| 1322 |
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| 1323 |
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| 1326 |
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| 1327 |
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| 1334 |
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| 1335 |
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| 1336 |
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| 1337 |
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| 1338 |
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