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Datasets:
mm1109
/
scRegNet

Tasks:
Other
Size:
10K<n<100K
Tags:
biology
gene-regulatory-networks
single-cell
glioblastoma
perturbation
grn-inference
License:
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Upload results/stage_c/base_full_overlap_report.json with huggingface_hub

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  1. results/stage_c/base_full_overlap_report.json +674 -0
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+ {
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+ "metric": "base_full_overlap_pct",
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+ "definition": "For each source\u00d7celltype\u00d7active-TF, compare top-50 targets from threshold-gated full score vs base score on the same threshold-eligible candidate set (expr_r>tau AND expr_t>tau; self-edge removed). Overlap = |intersection|/50.",
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+ "threshold_percentile": 25,
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510
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511
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512
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513
+ "pass_80pct": true
514
+ },
515
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516
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517
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518
+ "mean_overlap_pct": 100.0,
519
+ "pass_80pct": true
520
+ },
521
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522
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523
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524
+ "mean_overlap_pct": 100.0,
525
+ "pass_80pct": true
526
+ },
527
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528
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529
+ "n_active_tfs": 1107,
530
+ "mean_overlap_pct": 100.0,
531
+ "pass_80pct": true
532
+ },
533
+ "Oligodendrocyte": {
534
+ "tau": 0.004866,
535
+ "n_active_tfs": 1117,
536
+ "mean_overlap_pct": 100.0,
537
+ "pass_80pct": true
538
+ },
539
+ "Other": {
540
+ "tau": 0.011968,
541
+ "n_active_tfs": 1083,
542
+ "mean_overlap_pct": 100.0,
543
+ "pass_80pct": true
544
+ },
545
+ "Pericyte": {
546
+ "tau": 0.015292,
547
+ "n_active_tfs": 1059,
548
+ "mean_overlap_pct": 100.0,
549
+ "pass_80pct": true
550
+ },
551
+ "TAM": {
552
+ "tau": 0.005858,
553
+ "n_active_tfs": 1096,
554
+ "mean_overlap_pct": 100.0,
555
+ "pass_80pct": true
556
+ }
557
+ }
558
+ },
559
+ "hgfb": {
560
+ "mean_overlap_pct": 100.0,
561
+ "min_context_overlap_pct": 100.0,
562
+ "max_context_overlap_pct": 100.0,
563
+ "pass_80pct_all_contexts": true,
564
+ "contexts": {
565
+ "Astrocyte": {
566
+ "tau": 0.01095,
567
+ "n_active_tfs": 1105,
568
+ "mean_overlap_pct": 100.0,
569
+ "pass_80pct": true
570
+ },
571
+ "Endothel": {
572
+ "tau": 0.011552,
573
+ "n_active_tfs": 1093,
574
+ "mean_overlap_pct": 100.0,
575
+ "pass_80pct": true
576
+ },
577
+ "Excitatory neuron": {
578
+ "tau": 0.011817,
579
+ "n_active_tfs": 1092,
580
+ "mean_overlap_pct": 100.0,
581
+ "pass_80pct": true
582
+ },
583
+ "Inhibitory neuron": {
584
+ "tau": 0.014047,
585
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586
+ "mean_overlap_pct": 100.0,
587
+ "pass_80pct": true
588
+ },
589
+ "Lymphocyte": {
590
+ "tau": 0.008424,
591
+ "n_active_tfs": 1038,
592
+ "mean_overlap_pct": 100.0,
593
+ "pass_80pct": true
594
+ },
595
+ "Malignant": {
596
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597
+ "n_active_tfs": 1182,
598
+ "mean_overlap_pct": 100.0,
599
+ "pass_80pct": true
600
+ },
601
+ "Neftel_AC": {
602
+ "tau": 0.010261,
603
+ "n_active_tfs": 1171,
604
+ "mean_overlap_pct": 100.0,
605
+ "pass_80pct": true
606
+ },
607
+ "Neftel_MES1": {
608
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609
+ "n_active_tfs": 1143,
610
+ "mean_overlap_pct": 100.0,
611
+ "pass_80pct": true
612
+ },
613
+ "Neftel_MES2": {
614
+ "tau": 0.010276,
615
+ "n_active_tfs": 1156,
616
+ "mean_overlap_pct": 100.0,
617
+ "pass_80pct": true
618
+ },
619
+ "Neftel_NPC1": {
620
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621
+ "n_active_tfs": 1176,
622
+ "mean_overlap_pct": 100.0,
623
+ "pass_80pct": true
624
+ },
625
+ "Neftel_NPC2": {
626
+ "tau": 0.013478,
627
+ "n_active_tfs": 1160,
628
+ "mean_overlap_pct": 100.0,
629
+ "pass_80pct": true
630
+ },
631
+ "Neftel_OPC": {
632
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633
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634
+ "mean_overlap_pct": 100.0,
635
+ "pass_80pct": true
636
+ },
637
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638
+ "tau": 0.009957,
639
+ "n_active_tfs": 1107,
640
+ "mean_overlap_pct": 100.0,
641
+ "pass_80pct": true
642
+ },
643
+ "Oligodendrocyte": {
644
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645
+ "n_active_tfs": 1117,
646
+ "mean_overlap_pct": 100.0,
647
+ "pass_80pct": true
648
+ },
649
+ "Other": {
650
+ "tau": 0.011968,
651
+ "n_active_tfs": 1083,
652
+ "mean_overlap_pct": 100.0,
653
+ "pass_80pct": true
654
+ },
655
+ "Pericyte": {
656
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657
+ "n_active_tfs": 1059,
658
+ "mean_overlap_pct": 100.0,
659
+ "pass_80pct": true
660
+ },
661
+ "TAM": {
662
+ "tau": 0.005858,
663
+ "n_active_tfs": 1096,
664
+ "mean_overlap_pct": 100.0,
665
+ "pass_80pct": true
666
+ }
667
+ }
668
+ }
669
+ },
670
+ "global_mean_overlap_pct": 100.0,
671
+ "global_min_overlap_pct": 100.0,
672
+ "global_max_overlap_pct": 100.0,
673
+ "all_source_contexts_pass_80pct": true
674
+ }