Upload results/experiments/exp_7/results.json with huggingface_hub

results/experiments/exp_7/results.json

@@ -2,33 +2,193 @@
   "geneformer": {
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@@ -37,20 +197,20 @@
       "n_essential": 1502
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-        "hallmark:TNF-alpha Signaling via NF-kB": 0.9319,
-        "kegg:Butanoate metabolism": 0.926
+        "kegg:Olfactory transduction": 0.948,
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       }
     },
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@@ -62,33 +222,193 @@
   "scgpt": {
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@@ -97,20 +417,20 @@
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         "kegg:ABC transporters": 0.714,
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-        "kegg:Fatty acid biosynthesis": 0.6751,
-        "kegg:Chemokine signaling pathway": 0.6689,
-        "kegg:Ascorbate and aldarate metabolism": 0.666
+        "kegg:Renin secretion": 0.7101,
+        "kegg:African trypanosomiasis": 0.7074
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     },
     "tf_clustering": {
@@ -122,33 +442,193 @@
   "scprint": {
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@@ -157,20 +637,20 @@
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       "top_sets": {
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+        "kegg:SNARE interactions in vesicular transport": 1.0,
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+        "kegg:Mineral absorption": 0.9984,
+        "kegg:Starch and sucrose metabolism": 0.9981,
         "kegg:Folate biosynthesis": 0.9976,
         "kegg:Glycosaminoglycan biosynthesis": 0.9972,
         "kegg:African trypanosomiasis": 0.9969,
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-        "kegg:Glycine, serine and threonine metabolism": 0.9871,
-        "kegg:Cytokine-cytokine receptor interaction": 0.9866
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     },
     "tf_clustering": {
@@ -182,33 +662,193 @@
   "pinnacle": {
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           "auprc": 0.0964
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         "GATA2": {
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         },
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+        "TCF7L2": {
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         },
-        "PAX6": {
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-          "auprc": 0.0269
+        "TCF12": {
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+          "auprc": 0.0902
         },
-        "REST": {
-          "auroc": 0.7129,
-          "auprc": 0.9236
+        "SP1": {
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+          "auprc": 0.2492
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+        "EGR1": {
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+          "auprc": 0.1238
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+          "auprc": 0.3457
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+        "FOXP1": {
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+          "auprc": 0.0096
         }
       },
-      "median_auroc": 0.5816,
-      "mean_auroc": 0.5931
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+      "mean_auroc": 0.573
     },
     "depmap": {
       "auroc": 0.7993,
@@ -217,20 +857,20 @@
       "n_essential": 1502
     },
     "msigdb": {
-      "n_sets_evaluated": 200,
-      "median_auroc": 0.6465,
-      "mean_auroc": 0.6427,
+      "n_sets_evaluated": 360,
+      "median_auroc": 0.6404,
+      "mean_auroc": 0.641,
       "top_sets": {
+        "kegg:Ribosome": 0.9278,
         "kegg:Citrate cycle (TCA cycle)": 0.8665,
+        "kegg:Proteasome": 0.8602,
+        "kegg:Nicotine addiction": 0.8511,
         "kegg:Complement and coagulation cascades": 0.8483,
+        "kegg:Phototransduction": 0.8449,
         "hallmark:Myc Targets V1": 0.8433,
+        "kegg:Ribosome biogenesis in eukaryotes": 0.8408,
         "kegg:Glyoxylate and dicarboxylate metabolism": 0.8272,
-        "kegg:Leishmaniasis": 0.8255,
-        "hallmark:G2-M Checkpoint": 0.8197,
-        "hallmark:E2F Targets": 0.8027,
-        "hallmark:Oxidative Phosphorylation": 0.8009,
-        "hallmark:Myogenesis": 0.8003,
-        "kegg:Inflammatory bowel disease": 0.7991
+        "kegg:Leishmaniasis": 0.8255
       }
     },
     "tf_clustering": {
@@ -242,33 +882,193 @@
   "node2vec": {
     "chipatlas": {
       "per_tf": {
+        "SOX10": {
+          "auroc": 0.4994,
+          "auprc": 0.1422
+        },
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+          "auprc": 0.0177
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+          "auprc": 0.1996
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+          "auprc": 0.1196
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+          "auprc": 0.045
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+        "DLX5": {
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         "CTCF": {
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           "auprc": 0.0899
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-          "auprc": 0.9102
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+          "auprc": 0.0678
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-          "auprc": 0.6781
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           "auprc": 0.0224
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-          "auprc": 0.8783
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+          "auprc": 0.0802
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+          "auprc": 0.1929
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+          "auprc": 0.1094
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+        "TP53": {
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+          "auprc": 0.0251
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+        "E2F1": {
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+          "auprc": 0.3633
+        },
+        "FOXP1": {
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+          "auprc": 0.0083
         }
       },
-      "median_auroc": 0.4922,
-      "mean_auroc": 0.4746
+      "median_auroc": 0.5178,
+      "mean_auroc": 0.5359
     },
     "depmap": {
       "auroc": 0.9252,
@@ -277,20 +1077,20 @@
       "n_essential": 1502
     },
     "msigdb": {
-      "n_sets_evaluated": 200,
-      "median_auroc": 0.9806,
-      "mean_auroc": 0.9473,
+      "n_sets_evaluated": 360,
+      "median_auroc": 0.9846,
+      "mean_auroc": 0.9629,
       "top_sets": {
         "kegg:Ether lipid metabolism": 1.0,
+        "kegg:Nicotinate and nicotinamide metabolism": 1.0,
+        "kegg:Proteasome": 1.0,
+        "kegg:RNA polymerase": 1.0,
+        "kegg:SNARE interactions in vesicular transport": 1.0,
+        "kegg:Taurine and hypotaurine metabolism": 1.0,
         "kegg:Glycosylphosphatidylinositol (GPI)-anchor biosynthesis": 0.9999,
         "kegg:Linoleic acid metabolism": 0.9999,
-        "kegg:Aminoacyl-tRNA biosynthesis": 0.9998,
-        "kegg:Basal transcription factors": 0.9998,
-        "kegg:Fanconi anemia pathway": 0.9998,
-        "kegg:Glycerophospholipid metabolism": 0.9997,
-        "kegg:Inositol phosphate metabolism": 0.9997,
-        "kegg:Biosynthesis of unsaturated fatty acids": 0.9996,
-        "kegg:Fatty acid biosynthesis": 0.9995
+        "kegg:Mannose type O-glycan biosynthesis": 0.9999,
+        "kegg:Phototransduction": 0.9999
       }
     },
     "tf_clustering": {
@@ -302,33 +1102,193 @@
   "hgfb": {
     "chipatlas": {
       "per_tf": {
+        "SOX10": {
+          "auroc": 0.5075,
+          "auprc": 0.1465
+        },
+        "ASCL1": {
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+          "auprc": 0.2679
+        },
+        "OLIG2": {
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+          "auprc": 0.0154
+        },
+        "NEUROD1": {
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+          "auprc": 0.1965
+        },
+        "OTX2": {
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+          "auprc": 0.1122
+        },
+        "NFIA": {
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+          "auprc": 0.1871
+        },
+        "NFIB": {
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+          "auprc": 0.0544
+        },
+        "NKX2-2": {
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+          "auprc": 0.0327
+        },
+        "DLX5": {
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+          "auprc": 0.1386
+        },
+        "LHX2": {
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+          "auprc": 0.0032
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+        "CEBPB": {
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+          "auprc": 0.2814
+        },
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+          "auprc": 0.1323
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+          "auprc": 0.0169
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+          "auprc": 0.4019
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         "CTCF": {
           "auroc": 0.5207,
           "auprc": 0.0935
         },
-        "GATA2": {
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-          "auprc": 0.9019
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+          "auprc": 0.0472
         },
-        "NEUROD1": {
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-          "auprc": 0.6395
+        "EP300": {
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+          "auprc": 0.0115
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-          "auprc": 0.4377
+        "MYC": {
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+          "auprc": 0.1434
+        },
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+          "auprc": 0.1498
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+          "auprc": 0.0986
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+          "auprc": 0.0495
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+          "auprc": 0.0755
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         },
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+          "auprc": 0.0686
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+          "auprc": 0.1391
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+          "auprc": 0.4579
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+          "auprc": 0.0045
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           "auprc": 0.0236
         },
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-          "auprc": 0.9272
+        "GATA2": {
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+          "auprc": 0.0568
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+          "auprc": 0.6662
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+        "TCF7L2": {
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+          "auprc": 0.0584
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+          "auprc": 0.0922
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+          "auprc": 0.235
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+        "EGR1": {
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+          "auprc": 0.1566
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+        "TP53": {
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+          "auprc": 0.0082
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+        "E2F1": {
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+          "auprc": 0.3233
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+        "FOXP1": {
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       },
-      "median_auroc": 0.4852,
-      "mean_auroc": 0.4729
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     "depmap": {
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@@ -337,20 +1297,20 @@
       "n_essential": 1502
     },
     "msigdb": {
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-      "median_auroc": 0.8294,
-      "mean_auroc": 0.8198,
+      "n_sets_evaluated": 360,
+      "median_auroc": 0.8259,
+      "mean_auroc": 0.8108,
       "top_sets": {
         "kegg:Allograft rejection": 0.9833,
         "hallmark:Myc Targets V1": 0.9701,
+        "kegg:Proteasome": 0.9645,
         "kegg:Complement and coagulation cascades": 0.9639,
+        "kegg:Ribosome": 0.9627,
         "hallmark:E2F Targets": 0.9619,
+        "kegg:Olfactory transduction": 0.9604,
         "hallmark:Oxidative Phosphorylation": 0.9576,
         "hallmark:Epithelial Mesenchymal Transition": 0.9558,
-        "kegg:Glycosylphosphatidylinositol (GPI)-anchor biosynthesis": 0.9513,
-        "hallmark:Myc Targets V2": 0.9507,
-        "kegg:Butanoate metabolism": 0.9444,
-        "hallmark:IL-6/JAK/STAT3 Signaling": 0.9438
+        "kegg:Viral myocarditis": 0.9519
       }
     },
     "tf_clustering": {