Datasets:
Upload results/stage_c/summary.json with huggingface_hub
Browse files- results/stage_c/summary.json +101 -0
results/stage_c/summary.json
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| 1 |
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{
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| 2 |
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"n_genes": 18716,
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| 3 |
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"n_tfs": 1617,
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"n_contexts": 17,
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"context_names": [
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"Astrocyte",
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"Endothel",
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"Excitatory neuron",
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| 9 |
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"Inhibitory neuron",
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| 10 |
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"Lymphocyte",
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| 11 |
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"Malignant",
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| 12 |
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"Neftel_AC",
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| 13 |
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"Neftel_MES1",
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| 14 |
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"Neftel_MES2",
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| 15 |
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"Neftel_NPC1",
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| 16 |
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"Neftel_NPC2",
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| 17 |
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"Neftel_OPC",
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"OPC",
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"Oligodendrocyte",
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"Other",
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"Pericyte",
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"TAM"
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],
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"top_k": 50,
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"embedding_sources": [
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"geneformer",
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"scgpt",
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"scprint",
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"pinnacle",
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| 30 |
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"node2vec",
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"hgfb"
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],
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"results": {
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"geneformer": {
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"n_edges": 1374450,
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| 36 |
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"n_celltypes": 17,
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| 37 |
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"n_regulators": 1617,
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| 38 |
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"elapsed_sec": 3.8,
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| 39 |
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"score_stats": {
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| 40 |
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"mean": 0.1098,
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| 41 |
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"median": 0.0826,
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| 42 |
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"std": 0.1088
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| 43 |
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}
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| 44 |
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},
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| 45 |
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"scgpt": {
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| 46 |
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"n_edges": 1374450,
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| 47 |
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"n_celltypes": 17,
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| 48 |
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"n_regulators": 1617,
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| 49 |
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"elapsed_sec": 3.6,
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| 50 |
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"score_stats": {
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| 51 |
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"mean": 0.1339,
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| 52 |
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"median": 0.1014,
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| 53 |
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"std": 0.1282
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| 54 |
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}
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| 55 |
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},
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| 56 |
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"scprint": {
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| 57 |
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"n_edges": 1374450,
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| 58 |
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"n_celltypes": 17,
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| 59 |
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"n_regulators": 1617,
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| 60 |
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"elapsed_sec": 3.5,
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| 61 |
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"score_stats": {
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| 62 |
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"mean": 0.1269,
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| 63 |
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"median": 0.0963,
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| 64 |
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"std": 0.1222
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| 65 |
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}
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| 66 |
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},
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| 67 |
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"pinnacle": {
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| 68 |
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"n_edges": 1374450,
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| 69 |
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"n_celltypes": 17,
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| 70 |
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"n_regulators": 1617,
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| 71 |
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"elapsed_sec": 3.3,
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| 72 |
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"score_stats": {
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| 73 |
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"mean": 0.13,
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| 74 |
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"median": 0.099,
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| 75 |
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"std": 0.1232
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| 76 |
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}
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| 77 |
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},
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| 78 |
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"node2vec": {
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| 79 |
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"n_edges": 1374450,
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| 80 |
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"n_celltypes": 17,
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| 81 |
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"n_regulators": 1617,
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| 82 |
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"elapsed_sec": 3.8,
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| 83 |
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"score_stats": {
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| 84 |
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"mean": 0.0638,
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| 85 |
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"median": 0.0422,
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| 86 |
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"std": 0.0733
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| 87 |
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}
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| 88 |
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},
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| 89 |
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"hgfb": {
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| 90 |
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"n_edges": 1374450,
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| 91 |
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"n_celltypes": 17,
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| 92 |
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"n_regulators": 1617,
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| 93 |
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"elapsed_sec": 3.6,
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| 94 |
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"score_stats": {
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| 95 |
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"mean": 0.1187,
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| 96 |
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"median": 0.0905,
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| 97 |
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"std": 0.1158
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| 98 |
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}
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| 99 |
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}
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| 100 |
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}
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| 101 |
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}
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