Upload results/stage_b/summary.json with huggingface_hub

results/stage_b/summary.json

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+{
+  "held_out_regulators": [
+    "CDK12",
+    "STK40",
+    "LSM6",
+    "CSF1R",
+    "AURKB",
+    "CDK8",
+    "NDUFV2",
+    "PKM"
+  ],
+  "n_held_out": 8,
+  "train_edges": 251792,
+  "eval_edges": 67789,
+  "hyperparameters": {
+    "rank": 16,
+    "dim": 256,
+    "batch_size": 64,
+    "lr": 0.001,
+    "wd": 1e-05,
+    "max_epochs": 500,
+    "patience": 20,
+    "seed": 42,
+    "focal_alpha": 0.25,
+    "focal_gamma": 2.0
+  },
+  "results": {
+    "control_random_embeddings": {
+      "auroc": 0.5112,
+      "auprc": 0.0156
+    },
+    "control_random_w": {
+      "auroc": 0.4673,
+      "auprc": 0.0136
+    },
+    "control_shuffled_labels": {
+      "auroc": 0.817,
+      "auprc": 0.1056
+    },
+    "geneformer": {
+      "auroc": 0.8618,
+      "auprc": 0.1313
+    },
+    "hgfb": {
+      "auroc": 0.713,
+      "auprc": 0.0303
+    },
+    "node2vec": {
+      "auroc": 0.6615,
+      "auprc": 0.0351
+    },
+    "pinnacle": {
+      "auroc": 0.5934,
+      "auprc": 0.0175
+    },
+    "scgpt": {
+      "auroc": 0.517,
+      "auprc": 0.0172
+    },
+    "scprint": {
+      "auroc": 0.5826,
+      "auprc": 0.0167
+    }
+  }
+}