update on 2026-03-28: rerun-confirmed stage_a artifacts

data/processed/stage_a/expression_compendium/compendium_manifest.json

@@ -0,0 +1,725 @@
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+      "stagea_metadata": {
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+        "tissue": "gbm_primary_recurrent",
+        "species": "human"
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+      "notes": [
+        "Per-sample Matrix Market raw counts rebuilt as independent sparse chunks.",
+        "Explicit raw-count QC applied per sample using detected genes >=500, library size >=1000, mito fraction <=0.20.",
+        "Corrupted upstream GEO sample GSM5319529_SF8963 excluded with preserved evidence."
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+      "stagea_metadata": {
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+        "species": "human"
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+      "notes": [
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+        "Patient prefix parsed from column names before downstream provenance export."
+      ],
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+          "MGH101-P1-A05",
+          "MGH101-P1-A07",
+          "MGH101-P1-A09",
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+        "species": "human"
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+      "notes": [
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+        "Patient/library prefix parsed from cell IDs before provenance export."
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+        "species": "human"
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