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65024c3 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 | {
"model_id": "EleutherAI/enformer-official-rough",
"enformer_pytorch_version": "0.8.0",
"pytorch_version": "1.13.1+cu116",
"python_version": "3.10",
"cuda_version": "11.6",
"git_commit": "N/A - not a git repository",
"genome_build": "hg38",
"fasta_path_or_identifier": "/home/lkim2/enformer_GTEX/GTEX_data/data/38.fa",
"tissue": "Whole_Blood",
"input_length": 196608,
"human_output_shape": "896 x 5313",
"cage_track_ids": [
4950
],
"tss_bin_aggregation": "mean of bins 447,448,449",
"input_to_output_coordinate_mapping": "standard enformer central crop",
"gene_strand_handling": "none - TSS bin used regardless of strand",
"genotype_handling": "standardized genotype matrix provided, not re-standardized",
"ref_alt_orientation": "enformer_effect = log1p(ALT) - log1p(REF)",
"batch_size": 8,
"gpu": "cuda",
"numerical_precision": "float32",
"number_of_genes": 100,
"number_of_donors": 574,
"number_of_variants": 7179,
"number_of_snp_gene_pairs": 7334,
"number_of_excluded_variants": 0,
"random_seed": "none"
} |