moukaii commited on
Commit
1f5b8cf
·
verified ·
1 Parent(s): 7742117

Update Tuberculosis_Dataset.py

Browse files
Files changed (1) hide show
  1. Tuberculosis_Dataset.py +10 -11
Tuberculosis_Dataset.py CHANGED
@@ -1,7 +1,6 @@
1
  from datasets import DatasetBuilder, DownloadManager, DatasetInfo, Array3D, BuilderConfig, SplitGenerator, Version, Split
2
  from datasets.features import Features, Value, Sequence
3
  import pandas as pd
4
- import datasets
5
  import json
6
  import zipfile
7
  from PIL import Image
@@ -18,20 +17,20 @@ Nievas Offidani, M. and Delrieux, C. (2023) “The MultiCaRe Dataset: A Multimod
18
  class TuberculosisDataset(DatasetBuilder):
19
  # Define dataset's name
20
  BUILDER_CONFIGS = [
21
- BuilderConfig(name="tuberculosis_dataset", version=datasets.Version("1.0.0"))
22
  ]
23
 
24
  def _info(self):
25
  return DatasetInfo(
26
  description = _DESCRIPTION,
27
  features=Features({
28
- "case_id": datasets.Value("string"),
29
- "gender": datasets.Value("string"),
30
- "age": datasets.Value("int8"),
31
- "case_text": datasets.Value("string"),
32
- "keywords": datasets.Value("string"),
33
- "image_arrays": datasets.Sequence(Value("uint8")),
34
- "caption": datasets.Value("string"),
35
  }),
36
  supervised_keys = None,
37
  homepage = "https://zenodo.org/api/records/10079370/files-archive",
@@ -50,7 +49,7 @@ class TuberculosisDataset(DatasetBuilder):
50
  downloaded_files = dl_manager.download_and_extract(urls)
51
 
52
  return [
53
- datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs=downloaded_files),
54
  ]
55
 
56
  def _generate_examples(self, cases_csv, keywords_json, caption_json, image_filenames_json, images_zip):
@@ -99,4 +98,4 @@ class TuberculosisDataset(DatasetBuilder):
99
  image_arrays[pmcid].append(img_array.tolist())
100
  else:
101
  image_arrays[pmcid] = [img_array.tolist()]
102
- return image_arrays
 
1
  from datasets import DatasetBuilder, DownloadManager, DatasetInfo, Array3D, BuilderConfig, SplitGenerator, Version, Split
2
  from datasets.features import Features, Value, Sequence
3
  import pandas as pd
 
4
  import json
5
  import zipfile
6
  from PIL import Image
 
17
  class TuberculosisDataset(DatasetBuilder):
18
  # Define dataset's name
19
  BUILDER_CONFIGS = [
20
+ BuilderConfig(name="tuberculosis_dataset", version=Version("1.0.0"))
21
  ]
22
 
23
  def _info(self):
24
  return DatasetInfo(
25
  description = _DESCRIPTION,
26
  features=Features({
27
+ "case_id": Value("string"),
28
+ "gender": Value("string"),
29
+ "age": Value("int8"),
30
+ "case_text": Value("string"),
31
+ "keywords": Value("string"),
32
+ "image_arrays": Sequence(Array3D(dtype="uint8")),
33
+ "caption": Value("string"),
34
  }),
35
  supervised_keys = None,
36
  homepage = "https://zenodo.org/api/records/10079370/files-archive",
 
49
  downloaded_files = dl_manager.download_and_extract(urls)
50
 
51
  return [
52
+ SplitGenerator(name=Split.TRAIN, gen_kwargs=downloaded_files),
53
  ]
54
 
55
  def _generate_examples(self, cases_csv, keywords_json, caption_json, image_filenames_json, images_zip):
 
98
  image_arrays[pmcid].append(img_array.tolist())
99
  else:
100
  image_arrays[pmcid] = [img_array.tolist()]
101
+ return image_arrays