import glob import random import os import cv2 import numpy as np import tqdm from matplotlib import pyplot as plt import albumentations as A def visualize(image, mask, original_image=None, original_mask=None): fontsize = 18 if original_image is None and original_mask is None: f, ax = plt.subplots(2, 1, figsize=(8, 8)) ax[0].imshow(image) ax[1].imshow(mask) else: f, ax = plt.subplots(2, 2, figsize=(8, 8)) ax[0, 0].imshow(original_image) ax[0, 0].set_title('Original image', fontsize=fontsize) ax[1, 0].imshow(original_mask) ax[1, 0].set_title('Original mask', fontsize=fontsize) ax[0, 1].imshow(image) ax[0, 1].set_title('Transformed image', fontsize=fontsize) ax[1, 1].imshow(mask) ax[1, 1].set_title('Transformed mask', fontsize=fontsize) plt.show() def augment_by_times(): image_path=r'C:\Users\zhang\PycharmProjects\mmsegmentation\data\mr-cardiac\mri_train_2d\image' label_path=r'C:\Users\zhang\PycharmProjects\mmsegmentation\data\mr-cardiac\mri_train_2d\label' image_paths=glob.glob(os.path.join(image_path,'*.png')) # test=cv2.imread(r'C:\Users\zhang\PycharmProjects\mmsegmentation\data\mr-cardiac\train\label\mr_train_1001_image_100.png') # print(np.unique(test)) times=2 for i in range(times): for path in tqdm.tqdm(image_paths): filename=path.split('\\')[-1] # print(path,filename) image = cv2.imread(path,0) mask = cv2.imread(os.path.join(label_path,filename),0) # print(image.dtype,mask.dtype,np.unique(mask)) # print(np.unique(mask)) # print(image.shape, mask.shape) original_height, original_width = image.shape[:2] aug = A.Compose([ A.PadIfNeeded(min_height=128,min_width=128,value=0,p=1), # A.RandomSizedCrop(min_max_height=(128,256), height=original_height, # width=original_width, p=0.5), A.VerticalFlip(p=0.5), A.RandomRotate90(p=0.5), A.OneOf([ A.ElasticTransform(alpha=120, sigma=120 * 0.05, alpha_affine=120 * 0.03, p=0.5), A.GridDistortion(p=0.5), A.OpticalDistortion(distort_limit=2, shift_limit=0.5, p=1) ], p=0.8), A.CLAHE(p=0.8), A.RandomBrightnessContrast(p=0.8), A.RandomGamma(p=0.8) ] ) # random.seed(11) augmented = aug(image=image, mask=mask) image_heavy = augmented['image'] mask_heavy = augmented['mask'] # print(mask_heavy.shape,np.unique(mask_heavy)) label_num=len(np.unique(mask_heavy)) # print(image_heavy.dtype,mask_heavy.dtype) if label_num>=2: # print(filename,np.unique(mask_heavy)) cv2.imwrite(os.path.join(image_path.replace('mri_train_2d','mri_aug_2d'),f'aug{i+1}_'+filename),image_heavy) cv2.imwrite(os.path.join(label_path.replace('mri_train_2d', 'mri_aug_2d'), f'aug{i+1}_' + filename), mask_heavy) # visualize(image_heavy, mask_heavy, original_image=image, # original_mask=mask) # visualize(image, mask) # print(type(image),image_heavy.shape) # break if __name__ == '__main__': augment_by_times()