import glob import random import os import cv2 import numpy as np import tqdm from matplotlib import pyplot as plt import albumentations as A # patient009_frame13_03.png # patient030_frame01_07.png # patient049_frame11_02.png # patient069_frame01_00.png # patient085_frame01_09.png def visualize(image, mask, original_image=None, original_mask=None): fontsize = 18 if original_image is None and original_mask is None: f, ax = plt.subplots(2, 1, figsize=(8, 8)) ax[0].imshow(image) ax[1].imshow(mask) else: f, ax = plt.subplots(2, 2, figsize=(8, 8)) ax[0, 0].imshow(original_image) ax[0, 0].set_title('Original image', fontsize=fontsize) ax[1, 0].imshow(original_mask) ax[1, 0].set_title('Original mask', fontsize=fontsize) ax[0, 1].imshow(image) ax[0, 1].set_title('Transformed image', fontsize=fontsize) ax[1, 1].imshow(mask) ax[1, 1].set_title('Transformed mask', fontsize=fontsize) plt.show() # image_path=r'C:\Users\zhang\PycharmProjects\mmsegmentation\data\mr-cardiac\train\image' # label_path=r'C:\Users\zhang\PycharmProjects\mmsegmentation\data\mr-cardiac\train\label' # image_paths=glob.glob(os.path.join(image_path,'*.png')) # test=cv2.imread(r'C:\Users\zhang\PycharmProjects\mmsegmentation\data\mr-cardiac\train\label\mr_train_1001_image_100.png') # print(np.unique(test)) # for path in tqdm.tqdm(image_paths): # filename=path.split('\\')[-1] # print(path,filename) image = cv2.imread('./mri_train_2d/image/mr_train_1011_image_100.png',0) mask = cv2.imread('./mri_train_2d/label/mr_train_1011_image_100.png',0) # print(image.dtype,mask.dtype,np.unique(mask)) # print(np.unique(mask)) # print(image.shape, mask.shape) original_height, original_width = image.shape[:2] f, ax = plt.subplots(2, 7, figsize=(32,8),squeeze=True) plt.axis('off') image=A.resize(image,256,256) mask=A.resize(mask,256,256) ax[0,0].imshow(image,cmap='gray',) ax[0,0].axis('off') ax[1,0].imshow(mask,cmap='CMRmap') ax[1,0].axis('off') plt.gcf().tight_layout() aug=A.VerticalFlip() augmented = aug(image=image, mask=mask) image_heavy = augmented['image'] mask_heavy = augmented['mask'] ax[0,1].imshow(image_heavy,cmap='gray') ax[0,1].axis('off') ax[1,1].imshow(mask_heavy,cmap='CMRmap') ax[1,1].axis('off') aug=A.RandomRotate90() augmented = aug(image=image, mask=mask) image_heavy = augmented['image'] mask_heavy = augmented['mask'] ax[0,2].imshow(image_heavy,cmap='gray') ax[0,2].axis('off') ax[1,2].imshow(mask_heavy,cmap='CMRmap') ax[1,2].axis('off') aug=A.RandomSizedCrop(min_max_height=(100,200), height=256, width=256) augmented = aug(image=image, mask=mask) image_heavy = augmented['image'] mask_heavy = augmented['mask'] ax[0,3].imshow(image_heavy,cmap='gray') ax[0,3].axis('off') ax[1,3].imshow(mask_heavy,cmap='CMRmap') ax[1,3].axis('off') aug=A.ElasticTransform(alpha=120, sigma=120 * 0.05, alpha_affine=120 * 0.03) augmented = aug(image=image, mask=mask) image_heavy = augmented['image'] mask_heavy = augmented['mask'] ax[0,4].imshow(image_heavy,cmap='gray') ax[0,4].axis('off') ax[1,4].imshow(mask_heavy,cmap='CMRmap') ax[1,4].axis('off') aug=A.GridDistortion() augmented = aug(image=image, mask=mask) image_heavy = augmented['image'] mask_heavy = augmented['mask'] ax[0,5].imshow(image_heavy,cmap='gray') ax[0,5].axis('off') ax[1,5].imshow(mask_heavy,cmap='CMRmap') ax[1,5].axis('off') aug=A.OpticalDistortion(distort_limit=2, shift_limit=0.5) augmented = aug(image=image, mask=mask) image_heavy = augmented['image'] mask_heavy = augmented['mask'] ax[0,6].imshow(image_heavy,cmap='gray') ax[0,6].axis('off') ax[1,6].imshow(mask_heavy,cmap='CMRmap') ax[1,6].axis('off') plt.tight_layout() plt.subplots_adjust(wspace=0,hspace=0) plt.show() # f.savefig('a.png',bbox_inches='tight') # aug = A.Compose([ # # A.PadIfNeeded(min_height=128,min_width=128,value=0,p=1), # A.RandomSizedCrop(min_max_height=(128,256), height=original_height, # width=original_width, p=0.5), # A.VerticalFlip(p=0.5), # A.RandomRotate90(p=0.5), # A.OneOf([ # A.ElasticTransform(alpha=120, sigma=120 * 0.05, # alpha_affine=120 * 0.03, p=0.5), # A.GridDistortion(p=0.5), # A.OpticalDistortion(distort_limit=2, shift_limit=0.5, p=1) # ], p=0.8), # A.CLAHE(p=0.8), # A.RandomBrightnessContrast(p=0.8), # A.RandomGamma(p=0.8) # ] # ) # random.seed(11) # augmented = aug(image=image, mask=mask) # # image_heavy = augmented['image'] # mask_heavy = augmented['mask'] # # print(mask_heavy.shape,np.unique(mask_heavy)) # label_num=len(np.unique(mask_heavy)) # # print(image_heavy.dtype,mask_heavy.dtype) # # if label_num>=2: # # print(filename,np.unique(mask_heavy)) # # cv2.imwrite(os.path.join(image_path.replace('train','aug_train'),'aug_v2'+filename),image_heavy) # # cv2.imwrite(os.path.join(label_path.replace('train', 'aug_train'), # # 'aug_v2' + filename), mask_heavy) # visualize(image_heavy, mask_heavy, original_image=image, # original_mask=mask) # visualize(image, mask) # print(type(image),image_heavy.shape) # break