nappenstance commited on
Commit
d00deb2
·
verified ·
1 Parent(s): 5c243e2

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +39 -3
README.md CHANGED
@@ -1,3 +1,39 @@
1
- ---
2
- license: cc-by-nc-sa-4.0
3
- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: cc-by-nc-sa-4.0
3
+ ---
4
+ ## Dataset Composition
5
+
6
+ ### Core Components
7
+
8
+ | Component | Sequences | Tokens | Description |
9
+ | :--- | ---: | ---: | :--- |
10
+ | `ur50fp + tadb3` | 59,105,250 | 16,962,555,230 | UniRef50 + FPbase + TADB3 |
11
+ | `cazy` | 3,959,189 | 1,921,007,072 | Carbohydrate-Active enzymes |
12
+ | `toxinome` | 1,974,360 | 469,597,755 | Toxin sequences |
13
+ | `rvdbclustered` | 785,885 | 293,182,038 | Reference virus database |
14
+ | `pat` | +7,010 | +7,169,447 | PAT database |
15
+ | `t1tadb` | +1,945 | +70,078 | Type 1 TADB |
16
+ | `tantigen2` | 877 | 529,218 | Tumor antigens |
17
+ | `plasticenz` | 267 | 93,596 | Plastic enzymes |
18
+ | `pazy` | 131 | 37,586 | PAZy database |
19
+ | `omgprot50mincov3` | ~26.6M | ~5.1B | OMG protein sequences (calculated) |
20
+
21
+ ### Additional Large Components
22
+
23
+ | Component | Sequences | Tokens |
24
+ | :--- | ---: | ---: |
25
+ | `logan50 human-complete` | +71,363,348 | +7,498,753,875 |
26
+ | `virefirst10m` | 9,999,989 | 2,342,601,367 |
27
+ | `bfvd + sgdyeast + araplant` | 708,637 | 225,386,002 |
28
+
29
+ #### Breakdown: `bfvd` + `sgdyeast` + `araplant`
30
+
31
+ Detailed statistics for the combined biological set listed above.
32
+
33
+ | Component | Sequences | Tokens |
34
+ | :--- | ---: | ---: |
35
+ | `bfvd` | 350,637 | 67,645,357 |
36
+ | `sgdyeast` (strains) | 303,635 | 133,912,277 |
37
+ | `araplant` (Arabidopsis) | 48,338 | 20,894,760 |
38
+ | `sgdyeast` (ref) | 6,027 | 2,933,608 |
39
+ | **Total** | **708,637** | **225,386,002** |