Update README.md
Browse files
README.md
CHANGED
|
@@ -1,3 +1,31 @@
|
|
| 1 |
-
---
|
| 2 |
-
license: mit
|
| 3 |
-
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
license: mit
|
| 3 |
+
---
|
| 4 |
+
|
| 5 |
+
## ReTiNA-1: Automated Retention Time Prediction for LC-MS
|
| 6 |
+
|
| 7 |
+
ReTiNA-1 is an open-source dataset for training machine learning models to predict small molecule retention times in LC-MS workflows.
|
| 8 |
+
|
| 9 |
+
## 📈 The ReTiNA-1 Dataset
|
| 10 |
+
|
| 11 |
+
The ReTiNA-1 dataset contains:
|
| 12 |
+
|
| 13 |
+
- 4,359,188 molecule–environment combinations, the largest singular LC-MS retention time dataset of its kind to date
|
| 14 |
+
- Experimentally measured retention times, in seconds, curated from public datasets, benchmark papers, and literature
|
| 15 |
+
|
| 16 |
+
91 distinct LC-MS environments are used in ReTiNA-1. Each environment consists of:
|
| 17 |
+
|
| 18 |
+
- Solvent mixtures A and B, consisting of solvents and solvent additives contributing to pH
|
| 19 |
+
- The mobile phase gradient used, defined by the percentage of solvent mixture B over time (min)
|
| 20 |
+
- The chromatographic technique used - either HILIC or reverse phase
|
| 21 |
+
- LC-MS column dimensions, in terms of column length (mm), internal diameter (mm), and particle size (µm)
|
| 22 |
+
- The mobile phase flow rate, measured in mL/min
|
| 23 |
+
- The column temperature, measured in degrees Celsius
|
| 24 |
+
|
| 25 |
+
ReTiNA-1 is actively expanding with new experimental retention time values from the Coley Research Group at MIT, ensuring it remains a growing resource for optical property prediction.
|
| 26 |
+
|
| 27 |
+
This dataset is designed for use in:
|
| 28 |
+
|
| 29 |
+
- Estimating retention times for new compound–environment combinations
|
| 30 |
+
- Aiding in peak assignment during LC-MS method development
|
| 31 |
+
- Training ML models for retention time prediction under specific conditions
|