import numpy as np import plotly.graph_objects as go from pyVHR.signals.bvp import BVPsignal def getErrors(bpmES, bpmGT, timesES, timesGT): RMSE = RMSEerror(bpmES, bpmGT, timesES, timesGT) MAE = MAEerror(bpmES, bpmGT, timesES, timesGT) MAX = MAXError(bpmES, bpmGT, timesES, timesGT) PCC = PearsonCorr(bpmES, bpmGT, timesES, timesGT) return RMSE, MAE, MAX, PCC def RMSEerror(bpmES, bpmGT, timesES=None, timesGT=None): """ RMSE: """ diff = bpm_diff(bpmES, bpmGT, timesES, timesGT) n,m = diff.shape # n = num channels, m = bpm length df = np.zeros(n) for j in range(m): for c in range(n): df[c] += np.power(diff[c,j],2) # -- final RMSE RMSE = np.sqrt(df/m) return RMSE def MAEerror(bpmES, bpmGT, timesES=None, timesGT=None): """ MAE: """ diff = bpm_diff(bpmES, bpmGT, timesES, timesGT) n,m = diff.shape # n = num channels, m = bpm length df = np.sum(np.abs(diff),axis=1) # -- final MAE MAE = df/m return MAE def MAXError(bpmES, bpmGT, timesES=None, timesGT=None): """ MAE: """ diff = bpm_diff(bpmES, bpmGT, timesES, timesGT) n,m = diff.shape # n = num channels, m = bpm length df = np.max(np.abs(diff),axis=1) # -- final MAE MAX = df return MAX def PearsonCorr(bpmES, bpmGT, timesES=None, timesGT=None): from scipy import stats diff = bpm_diff(bpmES, bpmGT, timesES, timesGT) n,m = diff.shape # n = num channels, m = bpm length CC = np.zeros(n) for c in range(n): # -- corr r,p = stats.pearsonr(diff[c,:]+bpmES[c,:],bpmES[c,:]) CC[c] = r return CC def printErrors(RMSE, MAE, MAX, PCC): print("\n * Errors: RMSE = %.2f, MAE = %.2f, MAX = %.2f, PCC = %.2f" %(RMSE,MAE,MAX,PCC)) def displayErrors(bpmES, bpmGT, timesES=None, timesGT=None): if (timesES is None) or (timesGT is None): timesES = np.arange(m) timesGT = timesES diff = bpm_diff(bpmES, bpmGT, timesES, timesGT) n,m = diff.shape # n = num channels, m = bpm length df = np.abs(diff) dfMean = np.around(np.mean(df,axis=1),1) # -- plot errors fig = go.Figure() name = 'Ch 1 (µ = ' + str(dfMean[0])+ ' )' fig.add_trace(go.Scatter(x=timesES, y=df[0,:], name=name, mode='lines+markers')) if n > 1: name = 'Ch 2 (µ = ' + str(dfMean[1])+ ' )' fig.add_trace(go.Scatter(x=timesES, y=df[1,:], name=name, mode='lines+markers')) name = 'Ch 3 (µ = ' + str(dfMean[2])+ ' )' fig.add_trace(go.Scatter(x=timesES, y=df[2,:], name=name, mode='lines+markers')) fig.update_layout(xaxis_title='Times (sec)', yaxis_title='MAE', showlegend=True) fig.show() # -- plot bpm Gt and ES fig = go.Figure() GTmean = np.around(np.mean(bpmGT),1) name = 'GT (µ = ' + str(GTmean)+ ' )' fig.add_trace(go.Scatter(x=timesGT, y=bpmGT, name=name, mode='lines+markers')) ESmean = np.around(np.mean(bpmES[0,:]),1) name = 'ES1 (µ = ' + str(ESmean)+ ' )' fig.add_trace(go.Scatter(x=timesES, y=bpmES[0,:], name=name, mode='lines+markers')) if n > 1: ESmean = np.around(np.mean(bpmES[1,:]),1) name = 'ES2 (µ = ' + str(ESmean)+ ' )' fig.add_trace(go.Scatter(x=timesES, y=bpmES[1,:], name=name, mode='lines+markers')) ESmean = np.around(np.mean(bpmES[2,:]),1) name = 'E3 (µ = ' + str(ESmean)+ ' )' fig.add_trace(go.Scatter(x=timesES, y=bpmES[2,:], name=name, mode='lines+markers')) fig.update_layout(xaxis_title='Times (sec)', yaxis_title='BPM', showlegend=True) fig.show() def bpm_diff(bpmES, bpmGT, timesES=None, timesGT=None): n,m = bpmES.shape # n = num channels, m = bpm length if (timesES is None) or (timesGT is None): timesES = np.arange(m) timesGT = timesES diff = np.zeros((n,m)) for j in range(m): t = timesES[j] i = np.argmin(np.abs(t-timesGT)) for c in range(n): diff[c,j] = bpmGT[i]-bpmES[c,j] return diff