import numpy as np from scipy import signal from .base import VHRMethod class POS(VHRMethod): """ POS algorithm described in "Algorithmic Principles of Remote PPG" (https://ieeexplore.ieee.org/document/7565547 ) Numbers in brackets refer to the line numbers in the "Algorithm 1" of the paper """ methodName = 'POS' projection = np.array([[0, 1, -1], [-2, 1, 1]]) def __init__(self, **kwargs): super(POS, self).__init__(**kwargs) def apply(self, X): # Run the pos algorithm on the RGB color signal c with sliding window length wlen # Recommended value for wlen is 32 for a 20 fps camera (1.6 s) wlen = int(1.6*self.video.frameRate) # Initialize (1) h = np.zeros(X.shape[1]) for n in range(X.shape[1]): # Start index of sliding window (4) m = n - wlen + 1 if m >= 0: # Temporal normalization (5) cn = X[:, m:(n+1)] cn = np.dot(self.__get_normalization_matrix(cn), cn) # Projection (6) s = np.dot(self.projection, cn) # Tuning (7) hn = np.add(s[0, :], np.std(s[0, :])/np.std(s[1, :])*s[1, :]) # Overlap-adding (8) h[m:(n+1)] = np.add(h[m:(n+1)], hn - np.mean(hn)) return h def __get_normalization_matrix(self, x): # Compute a diagonal matrix n such that the mean of n*x is a vector of ones d = 0 if (len(x.shape) < 2) else 1 m = np.mean(x, d) n = np.array([[1/m[i] if i == j and m[i] else 0 for i in range(len(m))] for j in range(len(m))]) return n