Add ability to generate get methods for each repo using repos_commits config

athena_data.py

@@ -24,12 +24,15 @@ import sys
 
 csv.field_size_limit(sys.maxsize)
 
+import pandas as pd
+
 from function_parser.language_data import LANGUAGE_METADATA
 from function_parser.parsers.java_parser import JavaParser
 from function_parser.process import DataProcessor
 from git import Git, Repo
 from glob import glob
 from tree_sitter import Language
+from subprocess import check_output
 
 LANG = "java"
 JAVA_LANG = Language(
@@ -147,14 +150,15 @@ class NewDataset(datasets.GeneratorBasedBuilder):
         data_dir = os.path.join(data_dir, "repos-commits")
         if self.config.name == "repos_commits" and not os.path.exists(os.path.join(data_dir, "repos")):
             # Clone all repositories
-            check_output(
+            output = check_output(
                 [
                     "bash",
                     "clone.sh",
-                    "repo_names.txt",
+                    "repos.txt",
                 ],
                 cwd=data_dir,
             )
+            # print(output)
         return [
             datasets.SplitGenerator(
                 name=datasets.Split.TRAIN,
@@ -175,7 +179,9 @@ class NewDataset(datasets.GeneratorBasedBuilder):
         with open(file_path, encoding="utf-8") as f:
             csv_reader = csv.reader(f, quotechar='"', delimiter=",", quoting=csv.QUOTE_ALL, skipinitialspace=True)
             next(csv_reader, None) # skip header
-            for row_id, row in enumerate(csv_reader):
+            row_id = -1
+            for _, row in enumerate(csv_reader):
+                row_id += 1
                 repo, parent_commit, commit, changes = row
                 changes = ast.literal_eval(changes)
                 # print(changes)
@@ -188,15 +194,19 @@ class NewDataset(datasets.GeneratorBasedBuilder):
                         }
                 elif self.config.name == "repos_commits":
                     repo_path = os.path.join(data_dir, "repos", repo)
-                    # Otherwise, parse the project
-                    g = Git(repo_path)
-                    g.checkout(self.commit)
+                    try:
+                        # Otherwise, parse the project
+                        g = Git(repo_path)
+                        g.checkout(commit, force=True)
+                    except Exception as e:
+                        print(e)
+                        continue
 
                     indexes = []
-                    files = glob(f"{repo_path}/**/*.{LANGUAGE_METADATA[LANG]['ext']}")
+                    files = glob(f"{repo_path}/**/*.{LANGUAGE_METADATA[LANG]['ext']}", recursive=True)
                     sha = None
                     for f in files:
-                        definitions = FUNC_PROCESSOR.get_function_definitions(str(f))
+                        definitions = FUNC_PROCESSOR.get_function_definitions(f)
                         if definitions is None:
                             continue
 
@@ -220,6 +230,7 @@ class NewDataset(datasets.GeneratorBasedBuilder):
                         }
                     )
                     for _, row in df.iterrows():
+                        row_id += 1
                         yield row_id, {
                             "repo": repo,
                             "parent_commit": parent_commit,
@@ -229,5 +240,4 @@ class NewDataset(datasets.GeneratorBasedBuilder):
                             "code": row["code"],
                             "code_tokens": row["code_tokens"],
                             "docstring": row["docstring"],
-                        }
-                    data = pd.concat([repo.definitions for repo in self.repos])
+                        }