Upload 20 alcohol/bacteria mixed domain training/testing files

.gitattributes

@@ -57,3 +57,8 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 # Video files - compressed
 *.mp4 filter=lfs diff=lfs merge=lfs -text
 *.webm filter=lfs diff=lfs merge=lfs -text
+alcohol_0_bacteria_100/train.csv filter=lfs diff=lfs merge=lfs -text
+alcohol_100_bacteria_0/train.csv filter=lfs diff=lfs merge=lfs -text
+alcohol_25_bacteria_75/train.csv filter=lfs diff=lfs merge=lfs -text
+alcohol_50_bacteria_50/train.csv filter=lfs diff=lfs merge=lfs -text
+alcohol_75_bacteria_25/train.csv filter=lfs diff=lfs merge=lfs -text

alcohol_0_bacteria_100/id_test.csv

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+representation,harmonization_standard,variation_type,source_terminology
+Acidovorax sp. Pd-E-e-D-4(2),Acidovorax sp. Pd-E-(l)-e-D-4(2),remove unit,NCBI
+16SrVII,16SrVII (Ash yellows group),remove text in grouping syms,NCBI
+Acinetobacter sp. indicator_B3,Acinetobacter sp. I_B3,replace keywords,NCBI
+Arsenophonus endosymbiont Aphis citricidus,Arsenophonus endosymbiont of Aphis citricidus,remove stop words,NCBI
+16SrXXI Pine shoot proliferation group,16SrXXI (Pine shoot proliferation group),remove grouping syms,NCBI
+'Codiaeum variegatum' phytoplasma,'Codiaeum variegatum',user rep,(Derived) Bacteria Root
+'acacia salicina' littl leaf phytoplasma,'Acacia salicina' little leaf phytoplasma,remove suffix,NCBI
+'Apiumgraveolens' white leaf phytoplasma,'Apium graveolens' white leaf phytoplasma,remove punctuation,NCBI
+'Carpoxylon macrospermum' phytoplasma,'Carpoxylon macrospermum' phytoplasma,standard,NCBI
+Streptomyces sp. 229-4.1-LH-H14-02,Streptomyces sp. 229-4.1-LH-H14(s)-02,remove unit,NCBI
+Bacillus sp. By202 Ydz-hh,Bacillus sp. By202(B) Ydz-hh,remove text in grouping syms,NCBI
+Acinetobacter sp. paid-121,Acinetobacter sp. P-121,replace keywords,NCBI
+Arsenophonus endosymbiont Nothodelphax distincta,Arsenophonus endosymbiont of Nothodelphax distincta,remove stop words,NCBI
+Acinetobacter sp. 502010,Acinetobacter sp. 50(2010),remove grouping syms,NCBI
+'Lactuca sativa' X-disease phytoplasma,'Lactuca sativa',user rep,(Derived) Bacteria Root
+'cinnamomum camphora' witch'-broom phytoplasma,'Cinnamomum camphora' witches'-broom phytoplasma,remove suffix,NCBI
+'Cleomerutidosperma'witches'-broom phytoplasma,'Cleome rutidosperma' witches'-broom phytoplasma,remove punctuation,NCBI
+'Corylus avellana' phytoplasma D1469/18,'Corylus avellana' phytoplasma D1469/18,standard,NCBI
+Bittarella massiliensis,Bittarella massiliensis (ex Durand et al. 2017),remove text in grouping syms,NCBI
+Acinetobacter sp. pd-155,Acinetobacter sp. P-155,replace keywords,NCBI
+Arsenophonus endosymbiont Pheidole megacephala,Arsenophonus endosymbiont of Pheidole megacephala,remove stop words,NCBI
+Acinetobacter sp. WZ22011,Acinetobacter sp. WZ2(2011),remove grouping syms,NCBI
+'Prunus domestica' phytoplasma,'Prunus domestica',user rep,(Derived) Bacteria Root
+'Croton sparsifloru' phytoplasma,'Croton sparsiflorus' phytoplasma,remove suffix,NCBI
+'Dimocarpuslongan' witches'-broomphytoplasma,'Dimocarpus longan' witches'-broom phytoplasma,remove punctuation,NCBI
+'Elaeis guineensis' spear rot disease phytoplasma,'Elaeis guineensis' spear rot disease phytoplasma,standard,NCBI
+Blattabacterium sp.,Blattabacterium sp. (Cryptocercus kyebangensis),remove text in grouping syms,NCBI
+Bacillus sp. indicator-A-E-21,Bacillus sp. I-A-E-21,replace keywords,NCBI
+Arsenophonus endosymbiont Protocalliphora azurea,Arsenophonus endosymbiont of Protocalliphora azurea,remove stop words,NCBI
+Aeromonas sp. M42011,Aeromonas sp. M4(2011),remove grouping syms,NCBI
+Acetobacter cibinongensis 4H-1,Acetobacter cibinongensis NRIC 0482,user rep,NCBI
+'Heterothalamus alienu' phytoplasma,'Heterothalamus alienus' phytoplasma,remove suffix,NCBI
+'Picris echioides'phyllodyphytoplasma,'Picris echioides' phyllody phytoplasma,remove punctuation,NCBI
+'Psammotettix alienus' phytoplasma,'Psammotettix alienus' phytoplasma,standard,NCBI
+Buchnera aphidicola str. JF99,Buchnera aphidicola str. JF99 (Acyrthosiphon pisum),remove text in grouping syms,NCBI
+Bacteriovorax sp. PL1T6-flag,Bacteriovorax sp. PL1T6-F,replace keywords,NCBI
+Bartonella symbiont Penicillidia,Bartonella symbiont of Penicillidia,remove stop words,(Derived) Bacteria Root
+Alkalimonas sp. H22011,Alkalimonas sp. H2(2011),remove grouping syms,NCBI
+Acidiphilum rubrum,Acidiphilium rubrum,user rep,NCBI
+'tilia platyphyllo' phytoplasma,'Tilia platyphyllos' phytoplasma,remove suffix,NCBI
+'Spartiumjunceum' phytoplasma SI04-S4,'Spartium junceum' phytoplasma SI04-S4,remove punctuation,NCBI
+'Vigna radiata' bud proliferation phytoplasma,'Vigna radiata' bud proliferation phytoplasma,standard,NCBI
+Candidatus Carsonella ruddii,Candidatus Carsonella ruddii (Psylla morimotoi),remove text in grouping syms,NCBI
+Candidatus Gracilibacteria bacterium CG12_big_fil_reversal_8_21_14_0_65_38_15,Candidatus Gracilibacteria bacterium CG12_big_fil_rev_8_21_14_0_65_38_15,replace keywords,NCBI
+Betaproteobacteria symbiont Nautilus pompilius,Betaproteobacteria symbiont of Nautilus pompilius,remove stop words,(Derived) Bacteria Root
+Arthrobacter sp. 282011,Arthrobacter sp. 28(2011),remove grouping syms,NCBI
+Acidithiobacillales bacterium SG8_45,Acidithiobacillales bacterium,user rep,(Derived) Bacteria Root
+acaryochlori marina MU06,Acaryochloris marina MU06,remove suffix,NCBI
+'Withaniasomnifera' phytoplasma,'Withania somnifera' phytoplasma,remove punctuation,NCBI
+Absiella sp. AM09-50,Absiella sp. AM09-50,standard,NCBI
+Candidatus Thiodiazotropha sp.,Candidatus Thiodiazotropha sp. (ex Lucinoma borealis),remove text in grouping syms,NCBI
+Candidatus Jorgensenbacteria bacterium CG11_big_fil_reversal_8_21_14_0_20_38_23,Candidatus Jorgensenbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_38_23,replace keywords,NCBI
+Brachyspira sp 362402,Brachyspira sp. AN 3624/02,remove stop words,NCBI
+Arthrobacter sp. P92010,Arthrobacter sp. P9(2010),remove grouping syms,NCBI
+Acinetobacter gerneri DSM 14967,Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824,user rep,NCBI
+acaryochlori marina S1,Acaryochloris marina S1,remove suffix,NCBI
+AcaryochlorisspKUAC 3106,Acaryochloris sp. KUAC 3106,remove punctuation,NCBI
+Acetobacter sp. D6,Acetobacter sp. D6,standard,NCBI
+Coconut palm root phytoplasma,Coconut palm root (wilt) phytoplasma,remove text in grouping syms,NCBI
+Candidatus Pacebacteria bacterium CG10_big_fil_reversal_8_21_14_0_10_45_6,Candidatus Pacebacteria bacterium CG10_big_fil_rev_8_21_14_0_10_45_6,replace keywords,NCBI
+Candidatus Stammerula sp Trupanea amoena,Candidatus Stammerula sp. of Trupanea amoena,remove stop words,NCBI
+Azospirillum sp. HY92010,Azospirillum sp. HY9(2010),remove grouping syms,NCBI
+Acrocarpospora sp. 322D02,Acrocarpospora sp.,user rep,(Derived) Bacteria Root
+acetobact sp. LMG 32664,Acetobacter sp. LMG 32664,remove suffix,NCBI
+AcetobacteraceaebacteriumC2-6,Acetobacteraceae bacterium C2-6,remove punctuation,NCBI
+Acetobacteraceae bacterium W1.09-37,Acetobacteraceae bacterium W1.09-37,standard,NCBI
+Dehalococcoides sp. enrichment culture clone KS9,Dehalococcoides sp. enrichment culture clone KS9(KSRdA04),remove text in grouping syms,NCBI
+Cyanobacterium sp. Oman indicator,Cyanobacterium sp. Oman I,replace keywords,NCBI
+Cardinium endosymbiont Dicranotropis hamata,Cardinium endosymbiont of Dicranotropis hamata,remove stop words,NCBI
+Bacillaceae bacterium 1914_NPK6,Bacillaceae bacterium 1914_NPK(6),remove grouping syms,NCBI
+Streptomyces caeruleus,Actinoalloteichus caeruleus,user rep,NCBI
+acetobacterium sp. enrich culture clone 06-1235251-66,Acetobacterium sp. enrichment culture clone 06-1235251-66,remove suffix,NCBI
+Acetobacterium spenrichment culture clone 06-1235251-85,Acetobacterium sp. enrichment culture clone 06-1235251-85,remove punctuation,NCBI
+Acholeplasmataceae bacterium UBA5264,Acholeplasmataceae bacterium UBA5264,standard,NCBI
+Deinococcus soli,Deinococcus soli (ex Zhang et al. 2011),remove text in grouping syms,NCBI
+Dickeya sp. p 1464,Dickeya sp. PD 1464,replace keywords,NCBI
+Cardinium endosymbiont Vestalenula irajai,Cardinium endosymbiont of Vestalenula irajai,remove stop words,NCBI
+Bacillaceae bacterium 1944_FYM2,Bacillaceae bacterium 1944_FYM(2),remove grouping syms,NCBI
+Actinoalloteichus sp. ADI127-7,Actinoalloteichus fjordicus,user rep,NCBI
+achromobact sp. 110518_136_c_f5,Achromobacter sp. 110518_136_C_F5,remove suffix,NCBI
+Achromobacter sp.110518136C_G11,Achromobacter sp. 110518_136_C_G11,remove punctuation,NCBI
+Achromobacter sp. 110602_136_C_E6,Achromobacter sp. 110602_136_C_E6,standard,NCBI
+Lactobacillus sp. L319C02,Lactobacillus sp. L319(LBF2)C02,remove text in grouping syms,NCBI
+Duganella sp. paid-125,Duganella sp. P-125,replace keywords,NCBI
+Coxiella endosymbiont Amblyomma geayi,Coxiella endosymbiont of Amblyomma geayi,remove stop words,NCBI
+Bacillaceae bacterium 1944_NPK8,Bacillaceae bacterium 1944_NPK(8),remove grouping syms,NCBI
+Actinobacillus sp. F 154,Actinobacillus equuli subsp. haemolyticus,user rep,NCBI
+achromobact sp. 111117_136_c_h11,Achromobacter sp. 111117_136_C_H11,remove suffix,NCBI
+Achromobacter sp 12701,Achromobacter sp. 12701,remove punctuation,NCBI
+Achromobacter sp. 2789STDY5608633,Achromobacter sp. 2789STDY5608633,standard,NCBI
+Mycobacterium avium subsp. avium 2285,Mycobacterium avium subsp. avium 2285 (R),remove text in grouping syms,NCBI
+Enterobacteriaceae bacterium 71_flag,Enterobacteriaceae bacterium 71_f,replace keywords,NCBI
+Enterobacteriaceae endosymbiont Donacia clavipes,Enterobacteriaceae endosymbiont of Donacia clavipes,remove stop words,NCBI
+Bacillus sp. 18A2010,Bacillus sp. 18A(2010),remove grouping syms,NCBI
+Actinomadura mexicana Quintana et al. 2004,Actinomadura mexicana,user rep,NCBI
+achromobact sp. AR10,Achromobacter sp. AR10,remove suffix,NCBI
+AchromobacterspFBHYA2,Achromobacter sp. FBHYA2,remove punctuation,NCBI
+Achromobacter sp. JUb104,Achromobacter sp. JUb104,standard,NCBI
+Salegentibacter sp. DPA2_50.2mbsf,Salegentibacter sp. DPA2_(MB)_50.2mbsf,remove text in grouping syms,NCBI
+Escherichia coli O111:name,Escherichia coli O111:NM,replace keywords,NCBI

alcohol_0_bacteria_100/ood_test.csv

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+representation,harmonization_standard,variation_type,source_terminology
+Bacillus sp. 027-2.2-LH-H16-04,Bacillus sp. 027-2.2-LH-H16(s)-04,remove unit,NCBI
+16SrXXXVI,16SrXXXVI (Foxtail palm yellow decline group),remove text in grouping syms,NCBI
+Bacillus vallismortis DV1-flag-3,Bacillus vallismortis DV1-F-3,replace keywords,NCBI
+Ludwigia perennis little leaf yellowing phytoplasma,'Ludwigia perennis' little leaf and yellowing phytoplasma,remove stop words,NCBI
+Acinetobacter sp. 9282010,Acinetobacter sp. 928(2010),remove grouping syms,NCBI
+'Chrysanthemum coronarium' phytoplasma,'Chrysanthemum coronarium',user rep,(Derived) Bacteria Root
+'Ageratum conyzoid' phytoplasma,'Ageratum conyzoide' phytoplasma,remove suffix,NCBI
+'Alternanthera ficoidea' yellow leafrollphytoplasma,'Alternanthera ficoidea' yellow leaf roll phytoplasma,remove punctuation,NCBI
+'Borassus aethiopum' phytoplasma,'Borassus aethiopum' phytoplasma,standard,NCBI
+Pantoea sp. Pd-E-e-N-2(19),Pantoea sp. Pd-E-(s)-e-N-2(19),remove unit,NCBI
+Arthrobacter sp. enrichment culture clone 9.1,Arthrobacter sp. enrichment culture clone (ENR1)9.1,remove text in grouping syms,NCBI
+Bacteroides sp. flg-4,Bacteroides sp. F-4,replace keywords,NCBI
+Anabaena sp,Anabaena sp. MA,remove stop words,NCBI
+Acinetobacter sp. A342011,Acinetobacter sp. A34(2011),remove grouping syms,NCBI
+Faba bean stunting phytoplasma,'Vicia faba' stunting phytoplasma,user rep,NCBI
+'brassica napus' plant yellow phytoplasma,'Brassica napus' plant yellows phytoplasma,remove suffix,NCBI
+'Brassicaoleracea varacephala' phytoplasma,'Brassica oleracea var. acephala' phytoplasma,remove punctuation,NCBI
+'Citrus depressa' phytoplasma,'Citrus depressa' phytoplasma,standard,NCBI
+Xanthomonas sp. Pd-E-l-D-7(6),Xanthomonas sp. Pd-E-(s)-l-D-7(6),remove unit,NCBI
+Bacillus sp. By104Ydz-dh,Bacillus sp. By104(A)Ydz-dh,remove text in grouping syms,NCBI
+Brucella sp. A4/indicator,Brucella sp. A4/I,replace keywords,NCBI
+Arsenophonus endosymbiont Tetraleurodes mori,Arsenophonus endosymbiont of Tetraleurodes mori,remove stop words,NCBI
+Aeromonas sp. Ae212011,Aeromonas sp. Ae21(2011),remove grouping syms,NCBI
+'Zinnia elegans' witches'-broom phytoplasma,'Zinnia elegans',user rep,(Derived) Bacteria Root
+'Crotalaria junciea' aster yellow phytoplasma,'Crotalaria junciea' aster yellows phytoplasma,remove suffix,NCBI
+'Empoasca fabae'phytoplasma,'Empoasca fabae' phytoplasma,remove punctuation,NCBI
+'Fagopyrum esculentum' phyllody phytoplasma,'Fagopyrum esculentum' phyllody phytoplasma,standard,NCBI
+Bushehr alfalfa witches'-broom phytoplasma,Bushehr(Iran) alfalfa witches'-broom phytoplasma,remove text in grouping syms,NCBI
+Candidatus Magasanikbacteria bacterium CG10_big_fil_reversal_8_21_14_0_10_42_10,Candidatus Magasanikbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_42_10,replace keywords,NCBI
+Arsenophonus endosymbiont Triatoma melanosoma,Arsenophonus endosymbiont of Triatoma melanosoma,remove stop words,NCBI
+Aeromonas sp. Ae242011,Aeromonas sp. Ae24(2011),remove grouping syms,NCBI
+Abiotrophia sp. canine oral taxon 229,Abiotrophia sp.,user rep,(Derived) Bacteria Root
+'Helianthus annuu' aster yellows phytoplasma,'Helianthus annuus' aster yellows phytoplasma,remove suffix,NCBI
+'Opuntiaficus-indica'phytoplasma,'Opuntia ficus-indica' phytoplasma,remove punctuation,NCBI
+'Orosius albicinctus' witches'-broom phytoplasma,'Orosius albicinctus' witches'-broom phytoplasma,standard,NCBI
+Caryophanon sp. 179-4.2-CV-H26-14,Caryophanon sp. 179-4.2-CV-H26(h)-14,remove text in grouping syms,NCBI
+Candidatus Portnoybacteria bacterium CG10_big_fil_reversal_8_21_14_0_10_38_18,Candidatus Portnoybacteria bacterium CG10_big_fil_rev_8_21_14_0_10_38_18,replace keywords,NCBI
+Blochmannia endosymbiont Opisthopsis haddoni,Blochmannia endosymbiont of Opisthopsis haddoni,remove stop words,"NCBI, (Derived) Bacteria Root"
+Aeromonas sp. Ae292011,Aeromonas sp. Ae29(2011),remove grouping syms,NCBI
+Acetobacter pomorum DM001,Acetobacter pomorum,user rep,(Derived) Bacteria Root
+'Parthenium hysterophoru' witches'- broom phytoplasma,'Parthenium hysterophorus' witches'- broom phytoplasma,remove suffix,NCBI
+'Phoenix dactylifera' asteryellowsphytoplasma,'Phoenix dactylifera' aster yellows phytoplasma,remove punctuation,NCBI
+'Podocarpus nagi' fasciation phytoplasma,'Podocarpus nagi' fasciation phytoplasma,standard,NCBI
+Escherichia coli BL21,Escherichia coli BL21(DE3),remove text in grouping syms,NCBI
+Candidatus Roizmanbacteria bacterium CG11_big_fil_reversal_8_21_14_0_20_36_8,Candidatus Roizmanbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_36_8,replace keywords,NCBI
+Candidatus Regiella endosymbiont Tuberolachnus salignus,Candidatus Regiella endosymbiont of Tuberolachnus salignus,remove stop words,NCBI
+Aeromonas sp. Ae712011,Aeromonas sp. Ae71(2011),remove grouping syms,NCBI
+Acetothermia bacterium UBA3565,Acetothermia bacterium,user rep,(Derived) Bacteria Root
+'prunu salicina' phytoplasma plkh3,'Prunus salicina' phytoplasma PLKH3,remove suffix,NCBI
+'Pseudophoenixsargentii' yellowingphytoplasma,'Pseudophoenix sargentii' yellowing phytoplasma,remove punctuation,NCBI
+'Rosa multiflora' witches'-broom phytoplasma,'Rosa multiflora' witches'-broom phytoplasma,standard,NCBI
+Firoozabad Bermuda grass white leaf phytoplasma,Firoozabad (Iran) Bermuda grass white leaf phytoplasma,remove text in grouping syms,NCBI
+Carnobacterium sp. indicator-Bh20-14,Carnobacterium sp. I-Bh20-14,replace keywords,NCBI
+Candidatus Thiosymbion ectosymbiont Stilbonematinae gen sp 1 MW2019,Candidatus Thiosymbion ectosymbiont of Stilbonematinae gen. sp. 1 MW-2019,remove stop words,NCBI
+Aeromonas sp. D22011,Aeromonas sp. D2(2011),remove grouping syms,NCBI
+Achromobacter sp. GGAR 35G,Achromobacter sp. GGAR,user rep,(Derived) Bacteria Root
+'Senna surattensi' stem fasciat phytoplasma,'Senna surattensis' stem fasciation phytoplasma,remove suffix,NCBI
+'Taxilluschinensis'phytoplasma,'Taxillus chinensis' phytoplasma,remove punctuation,NCBI
+'Vaccinium myrtillus' phytoplasma,'Vaccinium myrtillus' phytoplasma,standard,NCBI
+Lactobacillus sp. L329D02,Lactobacillus sp. L329(LBF2)D02,remove text in grouping syms,NCBI
+Desulfosporosinus sp. enrichment culture clone edition,Desulfosporosinus sp. enrichment culture clone Ed,replace keywords,NCBI
+Candidatus Thiosymbion sp Type ELBA JGI 008,Candidatus Thiosymbion sp. Type A ELBA JGI 008,remove stop words,NCBI
+Aeromonas sp. s72024,Aeromonas sp. s7(2024),remove grouping syms,NCBI
+Gram-negative heterotrophic acidophile Y008,Acidicaldus organivorans,user rep,NCBI
+'Vigna radiata' littl leaf phytoplasma,'Vigna radiata' little leaf phytoplasma,remove suffix,NCBI
+'Zinnia elegans' phyllodyphytoplasma,'Zinnia elegans' phyllody phytoplasma,remove punctuation,NCBI
+"2,4-D degrading bacterium B6-10","2,4-D degrading bacterium B6-10",standard,NCBI
+Microbacterium sp. G2W6,Microbacterium sp. G2W6(B),remove text in grouping syms,NCBI
+Dickeya sp. paid 3786,Dickeya sp. PD 3786,replace keywords,NCBI
+Candidatus Thiosymbion sp Type ELBA JGI 009,Candidatus Thiosymbion sp. Type A ELBA JGI 009,remove stop words,NCBI
+Afipia sp. PVC0.1X,Afipia sp. PVC(0.1)X,remove grouping syms,NCBI
+Acidimicrobiia bacterium UBA1281,Acidimicrobiia bacterium,user rep,(Derived) Bacteria Root
+"2,4-D-degrad bacterium tfd13","2,4-D-degrading bacterium TFD13",remove suffix,NCBI
+Acaryochloridaceaecyanobacterium RL_2_7,Acaryochloridaceae cyanobacterium RL_2_7,remove punctuation,NCBI
+Acaryochloris marina HP3,Acaryochloris marina HP3,standard,NCBI
+Phytoplasma sp. LfY4-Oaxaca,Phytoplasma sp. LfY4(MA3)-Oaxaca,remove text in grouping syms,NCBI
+Enterobacter sp. indicator_32-J6NFB11C,Enterobacter sp. I_32-J6NFB11C,replace keywords,NCBI
+Candidatus Thiosymbion sp Type ELBA JGI 020,Candidatus Thiosymbion sp. Type A ELBA JGI 020,remove stop words,NCBI
+Agrobacterium sp. 16WI+_OTU30,Agrobacterium sp. 16WI(+)_OTU30,remove grouping syms,NCBI
+Acidovorax sp. D2M1,Acidovorax benzenivorans,user rep,NCBI
+acaryochlori sp. awaji-1,Acaryochloris sp. Awaji-1,remove suffix,NCBI
+Acetobactersacchari,Acetobacter sacchari,remove punctuation,NCBI
+Acetobacter sp. SLV-205,Acetobacter sp. SLV-205,standard,NCBI
+Wolbachia endosymbiont of Coremacera marginata,Wolbachia endosymbiont (group A) of Coremacera marginata,remove text in grouping syms,NCBI
+Enterobacter sp. p-P48,Enterobacter sp. PD-P48,replace keywords,NCBI
+Candidatus Tisiphia endosymbiont Dascillus cervinus,Candidatus Tisiphia endosymbiont of Dascillus cervinus,remove stop words,NCBI
+Agrobacterium sp. JK42011,Agrobacterium sp. JK4(2011),remove grouping syms,NCBI
+Acinetobacter sp. B301,Acinetobacter portensis,user rep,NCBI
+acetobacteracea bacterium AP25,Acetobacteraceae bacterium AP25,remove suffix,NCBI
+AcetobacteraceaebacteriumB71CO2,Acetobacteraceae bacterium B7_1CO2,remove punctuation,NCBI
+Acetobacteraceae bacterium CG91,Acetobacteraceae bacterium CG91,standard,NCBI
+Wolbachia endosymbiont of Eurema hecabe,Wolbachia endosymbiont of Eurema hecabe (Okinawa 1),remove text in grouping syms,NCBI
+Escherichia coli O111:name str. K6890,Escherichia coli O111:NM str. K6890,replace keywords,NCBI
+Cardinium endosymbiont Brevipalpus phoenicis,Cardinium endosymbiont of Brevipalpus phoenicis,remove stop words,NCBI
+Ancylobacter sp. 152011,Ancylobacter sp. 15(2011),remove grouping syms,NCBI
+Actibacterium sp. LS-811,Actibacterium ureilyticum,user rep,NCBI
+acetobacteracea bacterium F05_col5cp4,Acetobacteraceae bacterium F05_Col5CP4,remove suffix,NCBI
+Acetobacteraceae bacteriumb3-7,Acetobacteraceae bacterium b3-7,remove punctuation,NCBI
+Acetobacterium sp. enrichment culture clone 06-1235251-62,Acetobacterium sp. enrichment culture clone 06-1235251-62,standard,NCBI
+Wolbachia endosymbiont of Polistes fuscatus-Strepsiptera association,Wolbachia endosymbiont of Polistes fuscatus-Strepsiptera association (New York),remove text in grouping syms,NCBI

alcohol_0_bacteria_100/train.csv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:759bd6011345137f29e8e9021c704859e4fec89f506e825bc71d194c88c78493
+size 19489011

alcohol_0_bacteria_100/valid.csv

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+representation,harmonization_standard,variation_type,source_terminology
+Arthrobacter sp. 282011,Arthrobacter sp. 28(2011),remove grouping syms,NCBI
+'berberi sp.' phytoplasma,'Berberis sp.' phytoplasma,remove suffix,NCBI
+Arsenophonus endosymbiont Centrotus cornutus,Arsenophonus endosymbiont of Centrotus cornutus,remove stop words,NCBI
+Citrobacter sp MT,Citrobacter sp. MT D,remove stop words,NCBI
+Acidobacteriota bacterium T6-8.59,Acidobacteriota bacterium,user rep,(Derived) Bacteria Root
+Acetothermia bacterium UBA3574,Acetothermia bacterium UBA3574,standard,NCBI
+Bacillus sp. indicator-131,Bacillus sp. I-131,replace keywords,NCBI
+Achromobacter sp JUb104,Achromobacter sp. JUb104,remove punctuation,NCBI
+Coxiella endosymbiont Haemaphysalis asiatica,Coxiella endosymbiont of Haemaphysalis asiatica,remove stop words,NCBI
+Acinetobacter sp. pd-155,Acinetobacter sp. P-155,replace keywords,NCBI
+'Tiliaplatyphyllos' phytoplasma,'Tilia platyphyllos' phytoplasma,remove punctuation,NCBI
+Coxiella endosymbiont Rhipicephalus maculatus,Coxiella endosymbiont of Rhipicephalus maculatus,remove stop words,NCBI
+Desmonostoc muscorum EGY-name 2022,Desmonostoc muscorum EGY-NM 2022,replace keywords,NCBI
+Arsenophonus endosymbiont Protocalliphora azurea,Arsenophonus endosymbiont of Protocalliphora azurea,remove stop words,NCBI
+Achromobacter sp R-41391,Achromobacter sp. R-41391,remove punctuation,NCBI
+achromobact sp. n1a1_2015,Achromobacter sp. N1A1_2015,remove suffix,NCBI
+Acetobacter cibinongensis 4H-1,Acetobacter cibinongensis NRIC 0482,user rep,NCBI
+Acinetobacter baumannii ATCC 17978,Acinetobacter baumannii ATCC,user rep,(Derived) Bacteria Root
+Absiellasp.AM09-50,Absiella sp. AM09-50,remove punctuation,NCBI
+Candidatus Carsonella ruddii,Candidatus Carsonella ruddii (Psylla morimotoi),remove text in grouping syms,NCBI
+Lactococcus sp. SI-Km-1B,Lactococcus sp. SI-Km(R)-1B,remove text in grouping syms,NCBI
+'Carpoxylonmacrospermum' phytoplasma,'Carpoxylon macrospermum' phytoplasma,remove punctuation,NCBI
+Streptomyces sp. 196-3.2-CV-H26-06,Streptomyces sp. 196-3.2-CV-H26(h)-06,remove text in grouping syms,NCBI
+Bacteriovorax sp. M2S3-flag,Bacteriovorax sp. M2S3-F,replace keywords,NCBI
+'spinacia oleracea' phyllodi phytoplasma,'Spinacia oleracea' phyllody phytoplasma,remove suffix,NCBI
+Buchnera aphidicola str. JF99,Buchnera aphidicola str. JF99 (Acyrthosiphon pisum),remove text in grouping syms,NCBI
+Coconut palm root phytoplasma,Coconut palm root (wilt) phytoplasma,remove text in grouping syms,NCBI
+'Trema laevigata' witches'-broom phytoplasma,'Trema laevigata' witches'-broom phytoplasma,standard,NCBI
+Candidatus Jorgensenbacteria bacterium CG11_big_fil_reversal_8_21_14_0_20_38_23,Candidatus Jorgensenbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_38_23,replace keywords,NCBI
+Nostoc sp. 'Peltigera dolichorhiza ) cyanobiont',Nostoc sp. 'Peltigera dolichorhiza (MagainSerusiaux1109_DNA2289(LG)) cyanobiont',remove text in grouping syms,NCBI
+Sphingomonas sp. Pd-S-e-D-2(2),Sphingomonas sp. Pd-S-(l)-e-D-2(2),remove unit,NCBI
+Streptomyces sp. 248-4.2-LH-H15-08,Streptomyces sp. 248-4.2-LH-H15(s)-08,remove unit,NCBI
+Aeromonas sp. Ae22011,Aeromonas sp. Ae2(2011),remove grouping syms,NCBI
+'Withania somnifera' phytoplasma,'Withania somnifera' phytoplasma,standard,NCBI
+Cardinium endosymbiont Vestalenula irajai,Cardinium endosymbiont of Vestalenula irajai,remove stop words,NCBI
+Acidiphilium sp. 3.2 sup5,Acidiphilium sp. 3.2,user rep,(Derived) Bacteria Root
+Arthrobacter sp. bD112011,Arthrobacter sp. bD11(2011),remove grouping syms,NCBI
+achromobact sp. 111117_136_C_d6,Achromobacter sp. 111117_136_C_D6,remove suffix,NCBI
+Wolbachia endosymbiont of Eristalinus aeneus,Wolbachia endosymbiont (group A) of Eristalinus aeneus,remove text in grouping syms,NCBI
+Candidatus Ichthyocystis sp.,Candidatus Ichthyocystis sp. (ex Trachinotus ovatus),remove text in grouping syms,NCBI
+Alkalimonas sp. H22011,Alkalimonas sp. H2(2011),remove grouping syms,NCBI
+Escherichia coli O111:name,Escherichia coli O111:NM,replace keywords,NCBI
+Arsenophonus endosymbiont Dictyophara europaea,Arsenophonus endosymbiont of Dictyophara europaea,remove stop words,NCBI
+'cinnamomum camphora' witch'-broom phytoplasma,'Cinnamomum camphora' witches'-broom phytoplasma,remove suffix,NCBI
+Achromobacter sp110518_136CF5,Achromobacter sp. 110518_136_C_F5,remove punctuation,NCBI
+Achromobacter sp. T-19,Achromobacter sp. T-19,standard,NCBI
+Acinetobacter sp. paid-112,Acinetobacter sp. P-112,replace keywords,NCBI
+Arthrobacter sp. 167-4.2-CV-H26-02,Arthrobacter sp. 167-4.2-CV-H26(h)-02,remove text in grouping syms,NCBI
+Azospirillum sp. HY92010,Azospirillum sp. HY9(2010),remove grouping syms,NCBI
+Arthrobacter sp 6,Arthrobacter sp. Am 6,remove stop words,NCBI
+Acetobacterium spenrichment culture clone 06-1235251-85,Acetobacterium sp. enrichment culture clone 06-1235251-85,remove punctuation,NCBI
+Diaphorobacter sp. p-7,Diaphorobacter sp. PD-7,replace keywords,NCBI
+'Apium graveolens' phyllody phytoplasma,'Apium graveolens',user rep,(Derived) Bacteria Root
+Candidatus Stammerula sp Trupanea arboreae,Candidatus Stammerula sp. of Trupanea arboreae,remove stop words,NCBI
+Candidatus Gracilibacteria bacterium CG12_big_fil_reversal_8_21_14_0_65_38_15,Candidatus Gracilibacteria bacterium CG12_big_fil_rev_8_21_14_0_65_38_15,replace keywords,NCBI
+'vigna radiata' bud prolifer phytoplasma,'Vigna radiata' bud proliferation phytoplasma,remove suffix,NCBI
+Salegentibacter sp. DPA2_50.2mbsf,Salegentibacter sp. DPA2_(MB)_50.2mbsf,remove text in grouping syms,NCBI
+Acetobacter sp SKU60,Acetobacter sp. SKU60,remove punctuation,NCBI
+Wolbachia endosymbiont of Agrotis puta,Wolbachia endosymbiont (group B) of Agrotis puta,remove text in grouping syms,NCBI
+Acidiphilum rubrum,Acidiphilium rubrum,user rep,NCBI
+achromobact sp. inbio3018a,Achromobacter sp. INBio3018A,remove suffix,NCBI
+acetobact sp. oh-1,Acetobacter sp. Oh-1,remove suffix,NCBI
+Acinetobacter sp. G162009,Acinetobacter sp. G16(2009),remove grouping syms,NCBI
+Arsenophonus endosymbiont Aphis citricidus,Arsenophonus endosymbiont of Aphis citricidus,remove stop words,NCBI
+'Duranta repens' yellows Phytoplasma,'Duranta repens' yellows Phytoplasma,standard,NCBI
+Arthrobacter sp. P92010,Arthrobacter sp. P9(2010),remove grouping syms,NCBI
+'Macrotylomauniflorum' phytoplasma,'Macrotyloma uniflorum' phytoplasma,remove punctuation,NCBI
+Duganella sp. paid-125,Duganella sp. P-125,replace keywords,NCBI
+AcaryochlorisspKUAC 3106,Acaryochloris sp. KUAC 3106,remove punctuation,NCBI
+Acidovorax sp. M36,Acidovorax lacteus,user rep,NCBI
+'Roystonea regia' yellow decline phytoplasma,'Roystonea regia' yellow decline phytoplasma,standard,NCBI
+Arthrobacter sp. bA402011,Arthrobacter sp. bA40(2011),remove grouping syms,NCBI
+Achromobactersp.HPABA02,Achromobacter sp. HPABA02,remove punctuation,NCBI
+'Heterothalamus alienu' phytoplasma,'Heterothalamus alienus' phytoplasma,remove suffix,NCBI
+Candidatus Stammerula sp Trupanea amoena,Candidatus Stammerula sp. of Trupanea amoena,remove stop words,NCBI
+acetobacterium sp. enrich culture clone 06-1235251-66,Acetobacterium sp. enrichment culture clone 06-1235251-66,remove suffix,NCBI
+'Corylus avellana' proliferation phytoplasma,'Corylus avellana' proliferation phytoplasma,standard,NCBI
+Achromobacter sp. 111117_136_C_H11,Achromobacter sp. 111117_136_C_H11,standard,NCBI
+Dehalococcoides sp. enrichment culture clone KS9,Dehalococcoides sp. enrichment culture clone KS9(KSRdA04),remove text in grouping syms,NCBI
+Arthrobacter sp. L102010,Arthrobacter sp. L10(2010),remove grouping syms,NCBI
+Achromobacter sp. paid-P12,Achromobacter sp. PD-P12,replace keywords,NCBI
+Bacillus sp. indicator-A-E-21,Bacillus sp. I-A-E-21,replace keywords,NCBI
+Arsenophonus endosymbiont Lasius alienus,Arsenophonus endosymbiont of Lasius alienus,remove stop words,NCBI
+Achromobacter sp. SB41,Achromobacter sp. SB41,standard,NCBI
+Bacillus sp. 18A2010,Bacillus sp. 18A(2010),remove grouping syms,NCBI
+Bacteriovorax sp. E2T1-flg,Bacteriovorax sp. E2T1-F,replace keywords,NCBI
+achromobact sp. f32,Achromobacter sp. F32,remove suffix,NCBI
+Bacillus sp. 239-3.1-LH-Heh-06,Bacillus sp. 239-3.1-LH-Heh(h)-06,remove text in grouping syms,NCBI
+Dehalococcoides Family Group,Dehalococcoides Family A Group,remove stop words,NCBI
+Arthrobacter sp. indicator_GA_A_3_4,Arthrobacter sp. I_GA_A_3_4,replace keywords,NCBI
+Acinetobacter sp. 502010,Acinetobacter sp. 50(2010),remove grouping syms,NCBI
+Candidatus Pacebacteria bacterium CG10_big_fil_reversal_8_21_14_0_10_45_6,Candidatus Pacebacteria bacterium CG10_big_fil_rev_8_21_14_0_10_45_6,replace keywords,NCBI
+Bacteriovorax sp. M3T1-flag,Bacteriovorax sp. M3T1-F,replace keywords,NCBI
+'cucumi sativu' phyllodi phytoplasma Yazd,'Cucumis sativus' phyllody phytoplasma Yazd,remove suffix,NCBI
+Acinetobacter sp. indicator_B3,Acinetobacter sp. I_B3,replace keywords,NCBI
+AchromobacterspSR50-3,Achromobacter sp. SR50-3,remove punctuation,NCBI
+Bacillaceae bacterium 1944_FYM2,Bacillaceae bacterium 1944_FYM(2),remove grouping syms,NCBI
+'Amaranth chlorisi' phytoplasma,'Amaranth chlorisis' phytoplasma,remove suffix,NCBI
+Xanthomonas sp. Pd-E-l-D-9(20),Xanthomonas sp. Pd-E-(s)-l-D-9(20),remove unit,NCBI
+Acidobacteria bacterium enrichment culture clone CTBE CDB1001D12,Acidobacteria bacterium enrichment culture clone CTBE,user rep,(Derived) Bacteria Root
+Acidovorax sp. p42011,Acidovorax sp. p4(2011),remove grouping syms,NCBI
+"2,4-D-degrading bacterium TFD3","2,4-D-degrading bacterium",user rep,(Derived) Bacteria Root
+Cardinium endosymbiont Dicranotropis hamata,Cardinium endosymbiont of Dicranotropis hamata,remove stop words,NCBI
+achromobact sp. 12701,Achromobacter sp. 12701,remove suffix,NCBI
+Bacteriovorax sp. PH3S4-flag,Bacteriovorax sp. PH3S4-F,replace keywords,NCBI
+Acinetobacter baumannii strain 113,Acinetobacter baumannii 113,user rep,NCBI
+Acinetobacter sp. Bouvet382,Acinetobacter sp. Bouvet382(K.Irino 105/85),remove text in grouping syms,NCBI
+Arsenophonus endosymbiont Nysius sp 2,Arsenophonus endosymbiont of Nysius sp. 2,remove stop words,NCBI
+Acidithiobacillales bacterium SG8_45,Acidithiobacillales bacterium,user rep,(Derived) Bacteria Root
+Achromobacter spAR10,Achromobacter sp. AR10,remove punctuation,NCBI
+Coxiella endosymbiont Haemaphysalis,Coxiella endosymbiont of Haemaphysalis,remove stop words,(Derived) Bacteria Root
+Hyphomicrobium sp. Pd-S-e-D-8(2),Hyphomicrobium sp. Pd-S-(l)-e-D-8(2),remove unit,NCBI
+Enterobacteriaceae endosymbiont Donacia clavipes,Enterobacteriaceae endosymbiont of Donacia clavipes,remove stop words,NCBI
+achromobact sp. CS6G3-1,Achromobacter sp. CS6G3-1,remove suffix,NCBI
+Arsenophonus endosymbiont Pheidole megacephala,Arsenophonus endosymbiont of Pheidole megacephala,remove stop words,NCBI
+Achromobacter sp. 110518_136_C_G11,Achromobacter sp. 110518_136_C_G11,standard,NCBI
+Acetobacter sp. NBRC 3298,Acetobacter sp. NBRC,user rep,(Derived) Bacteria Root
+Bacillus sp. By130Ydz-ds,Bacillus sp. By130(A)Ydz-ds,remove text in grouping syms,NCBI
+Achromobacter sp. HPC42,Achromobacter sp. HPC42,standard,NCBI
+Bacillus sp. 213-3.3-CV-H-04,Bacillus sp. 213-3.3-CV-H(h)-04,remove text in grouping syms,NCBI
+Clostridium straminisolvens,Acetivibrio straminisolvens,user rep,NCBI
+Deinococcus soli,Deinococcus soli (ex Zhang et al. 2011),remove text in grouping syms,NCBI
+Achromobacter sp. EP17,Achromobacter sp. EP17,standard,NCBI
+Wolbachia endosymbiont of Alloplasta piceator,Wolbachia endosymbiont (group A) of Alloplasta piceator,remove text in grouping syms,NCBI
+'Corylusavellana' phytoplasma D1469/18,'Corylus avellana' phytoplasma D1469/18,remove punctuation,NCBI
+'Prunus domestica' phytoplasma,'Prunus domestica',user rep,(Derived) Bacteria Root
+Actinoalloteichus sp. ADI127-7,Actinoalloteichus fjordicus,user rep,NCBI
+Achromobacter sp. CM32,Achromobacter sp. CM32,standard,NCBI
+acaryochlori marina MU06,Acaryochloris marina MU06,remove suffix,NCBI
+Acinetobacter sp. NG12010,Acinetobacter sp. NG1(2010),remove grouping syms,NCBI
+Streptomyces caeruleus,Actinoalloteichus caeruleus,user rep,NCBI
+Actinomycetales bacterium B142010,Actinomycetales bacterium B14(2010),remove grouping syms,NCBI
+Bacteroidetes bacterium endosymbiont Geopemphigus sp,Bacteroidetes bacterium endosymbiont of Geopemphigus sp.,remove stop words,NCBI
+Achromobactersp.DMB53,Achromobacter sp. DMB53,remove punctuation,NCBI
+'Picris echioides' phyllody phytoplasma,'Picris echioides' phyllody phytoplasma,standard,NCBI
+Achromobactersp 111117136_C_G6,Achromobacter sp. 111117_136_C_G6,remove punctuation,NCBI
+Viola tricolor yellows little leaf phytoplasma,'Viola tricolor' yellows and little leaf phytoplasma,remove stop words,NCBI
+acetobacteracea bacterium c2-6,Acetobacteraceae bacterium C2-6,remove suffix,NCBI
+Alcanivorax sp. MARC2C-pd,Alcanivorax sp. MARC2C-P,replace keywords,NCBI
+Candidatus Niyogibacteria bacterium CG10_big_fil_reversal_8_21_14_0_10_46_36,Candidatus Niyogibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_46_36,replace keywords,NCBI
+Wolbachia endosymbiont of Parapoynx stratiotata,Wolbachia endosymbiont (group B) of Parapoynx stratiotata,remove text in grouping syms,NCBI
+Achromobactersp. NCCP-2966,Achromobacter sp. NCCP- 2966,remove punctuation,NCBI
+achromobact sp. r-17670,Achromobacter sp. R-17670,remove suffix,NCBI
+'psammotettix alienu' phytoplasma,'Psammotettix alienus' phytoplasma,remove suffix,NCBI
+Acholeplasmatales bacterium canine oral taxon 256,Acholeplasmatales bacterium canine oral taxon,user rep,(Derived) Bacteria Root
+'Dimocarpuslongan' witches'-broomphytoplasma,'Dimocarpus longan' witches'-broom phytoplasma,remove punctuation,NCBI
+'Acaciaarabica' phytoplasma,'Acacia arabica' phytoplasma,remove punctuation,NCBI
+Brachyspira sp 178801,Brachyspira sp. AN 1788/01,remove stop words,NCBI
+Acetobacter sp. DmW_125131,Acetobacter sp. DmW_125131,standard,NCBI
+Acaryochloris marina MU12,Acaryochloris marina MU12,standard,NCBI
+Actinoalloteichus cyanogriseus DSM 43889,Actinoalloteichus caeruleus DSM 43889,user rep,NCBI
+Dickeya sp. p 1464,Dickeya sp. PD 1464,replace keywords,NCBI
+acaryochlori marina S1,Acaryochloris marina S1,remove suffix,NCBI
+'Apium graveolens' white leaf phytoplasma,'Apium graveolens' white leaf phytoplasma,standard,NCBI
+Acinetobacter sp. 4-142010,Acinetobacter sp. 4-14(2010),remove grouping syms,NCBI
+'Spartium junceum' phytoplasma SI04-S4,'Spartium junceum' phytoplasma SI04-S4,standard,NCBI
+Achromobacter sp. MYb9,Achromobacter sp. MYb9,standard,NCBI
+Achromobacter sp. 111117_136_C_D5,Achromobacter sp. 111117_136_C_D5,standard,NCBI
+'Cicadellidae sp.' phytoplasma,'Cicadellidae sp.' phytoplasma,standard,NCBI
+Acetobacter tropicalis strain NBRC 101654,Acetobacter tropicalis NBRC 101654,user rep,NCBI
+Bacillaceae bacterium 2003_NPK8,Bacillaceae bacterium 2003_NPK(8),remove grouping syms,NCBI
+Cardinium endosymbiont Cybaeus,Cardinium endosymbiont of Cybaeus,remove stop words,(Derived) Bacteria Root
+Bacillaceae bacterium 1944_NPK8,Bacillaceae bacterium 1944_NPK(8),remove grouping syms,NCBI
+Bacillales bacterium 112010,Bacillales bacterium 11(2010),remove grouping syms,NCBI
+Aeromonas sp. B42011,Aeromonas sp. B4(2011),remove grouping syms,NCBI
+Arsenophonus endosymbiont Nothodelphax distincta,Arsenophonus endosymbiont of Nothodelphax distincta,remove stop words,NCBI
+Acetobacterium sp. Ha4,Acetobacterium sp. Ha4,standard,NCBI
+'Raphanussativus'phyllodyphytoplasma,'Raphanus sativus' phyllody phytoplasma,remove punctuation,NCBI
+Wolbachia endosymbiont of Porcellionides pruinosus,Wolbachia endosymbiont of Porcellionides pruinosus (Tunis),remove text in grouping syms,NCBI
+'Santalumalbum'phytoplasma,'Santalum album' phytoplasma,remove punctuation,NCBI
+Acetivibrio thermocellus ATCC 27405,Acetivibrio thermocellus,user rep,(Derived) Bacteria Root
+Acidaminococcus sp. Marseille-P4266,Acidaminococcus provencensis,user rep,NCBI
+Arsenophonus endosymbiont Bemisia tabaci AnSL,Arsenophonus endosymbiont of Bemisia tabaci AnSL,remove stop words,NCBI
+'sesamum indicum' phyllodi phytoplasma GKVK,'Sesamum indicum' phyllody phytoplasma GKVK,remove suffix,NCBI
+Acinetobacter gerneri DSM 14967,Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824,user rep,NCBI
+Actinobacillus sp. F 154,Actinobacillus equuli subsp. haemolyticus,user rep,NCBI
+achromobact sp. 110602_136_c_E6,Achromobacter sp. 110602_136_C_E6,remove suffix,NCBI
+Acinetobacter sp. paid-121,Acinetobacter sp. P-121,replace keywords,NCBI
+Cyanobacterium sp. Oman indicator,Cyanobacterium sp. Oman I,replace keywords,NCBI
+achromobact sp. SCU-B189,Achromobacter sp. SCU-B189,remove suffix,NCBI
+'Juncus articulatus' phytoplasma,'Juncus articulatus' phytoplasma (ex Livia junci),remove text in grouping syms,NCBI
+Bradyrhizobium lupini HPC,Bradyrhizobium lupini HPC(L),remove text in grouping syms,NCBI
+Candidatus Roizmanbacteria bacterium CG17_big_fil_post_reversal_8_21_14_2_50_39_7,Candidatus Roizmanbacteria bacterium CG17_big_fil_post_rev_8_21_14_2_50_39_7,replace keywords,NCBI
+Achromobacter sp.110602_136_CF10,Achromobacter sp. 110602_136_C_F10,remove punctuation,NCBI
+Bacillaceae bacterium 1914_NPK6,Bacillaceae bacterium 1914_NPK(6),remove grouping syms,NCBI
+Arthrobacter sp. F112011,Arthrobacter sp. F11(2011),remove grouping syms,NCBI
+Acetobacteraceae bacterium AT-5844,Acetobacteraceae bacterium AT-5844,standard,NCBI
+Lactobacillus sp. L319C02,Lactobacillus sp. L319(LBF2)C02,remove text in grouping syms,NCBI
+Alteromonas sp. N982010,Alteromonas sp. N98(2010),remove grouping syms,NCBI
+'Vigna radiata'phyllody phytoplasma,'Vigna radiata' phyllody phytoplasma,remove punctuation,NCBI
+achromobact lyticu,Achromobacter lyticus,remove suffix,NCBI
+Bacillus sp. 4S22015,Bacillus sp. 4S2(2015),remove grouping syms,NCBI
+Acinetobacter sp. pd-107,Acinetobacter sp. P-107,replace keywords,NCBI
+Wolbachia endosymbiont of Hydraena sp,Wolbachia endosymbiont of Hydraena (Hydraenopsis) sp.,remove text in grouping syms,NCBI
+Aeromonas sp. H102011,Aeromonas sp. H10(2011),remove grouping syms,NCBI
+AcetobacteraceaebacteriumW1.09-37,Acetobacteraceae bacterium W1.09-37,remove punctuation,NCBI
+'Corylus avellana' phytoplasma D876/17,'Corylus avellana' phytoplasma,user rep,(Derived) Bacteria Root
+Dehalococcoides sp. enrichment culture clone KS24,Dehalococcoides sp. enrichment culture clone KS24(KSRdA09),remove text in grouping syms,NCBI
+Achromobacter sp. PH24,Achromobacter sp. PH24,standard,NCBI
+Betaproteobacteria symbiont Nautilus pompilius,Betaproteobacteria symbiont of Nautilus pompilius,remove stop words,(Derived) Bacteria Root

alcohol_100_bacteria_0/id_test.csv

@@ -0,0 +1,101 @@
+representation,harmonization_standard,variation_type,source_terminology
+55 Or 20 MCQ,20 Or 55 MCQ,swap words around conjunctions,PhenX Toolkit
+action Excited Marijuana,Act Excited Marijuana,replace keywords,PhenX Toolkit
+12 Month Cough Cold Medicine Use,12 Month Cough Or Cold Medicine Use,remove stop words,PhenX Toolkit
+12 month cocain use,12 Month Cocaine Use,remove suffix,PhenX Toolkit
+12 MonthAndroUse,12 Month Andro Use,remove punctuation,PhenX Toolkit
+12 Month Creatine Use,12 Month Creatine Use,standard,PhenX Toolkit
+50 Or 27 MCQ,27 Or 50 MCQ,swap words around conjunctions,PhenX Toolkit
+action Without Thinking When Upset,Act Without Thinking When Upset,replace keywords,PhenX Toolkit
+12 Month Narcotic Use,12 Month Other Narcotic Use,remove stop words,PhenX Toolkit
+12 month methamphetamin use,12 Month Methamphetamine Use,remove suffix,PhenX Toolkit
+12MonthCrystal Meth Use,12 Month Crystal Meth Use,remove punctuation,PhenX Toolkit
+12 Month Heroin Use,12 Month Heroin Use,standard,PhenX Toolkit
+60 Or 54 MCQ,54 Or 60 MCQ,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity alc Treatment,AddictionSeverity Alcohol Treatment,replace keywords,PhenX Toolkit
+30 Day Heroin Needle Use,30 Day Heroin With Needle Use,remove stop words,PhenX Toolkit
+12 month quaalud Use,12 Month Quaalude Use,remove suffix,PhenX Toolkit
+12Month MDMAUse,12 Month MDMA Use,remove punctuation,PhenX Toolkit
+12 Month Marijuana Hashish Use,12 Month Marijuana Hashish Use,standard,PhenX Toolkit
+75 Or 67 MCQ,67 Or 75 MCQ,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Anxiety prior Month,AddictionSeverity Anxiety Past Month,replace keywords,PhenX Toolkit
+30 Day Narcotic Use,30 Day Other Narcotic Use,remove stop words,PhenX Toolkit
+12 month sed use,12 Month Sedative Use,remove suffix,PhenX Toolkit
+12 Month OxyContinUse,12 Month OxyContin Use,remove punctuation,PhenX Toolkit
+12 Month Ritalin Use,12 Month Ritalin Use,standard,PhenX Toolkit
+80 Or 78 MCQ,78 Or 80 MCQ,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Criminal Activity prior Month,AddictionSeverity Criminal Activity Past Month,replace keywords,PhenX Toolkit
+AIDS Date Onset Month,AIDS Date Of Onset Month,remove stop words,PhenX Toolkit
+20Drinks one Day morethanonc,20Drinks One Day MorethanOnce,remove suffix,PhenX Toolkit
+2000HzRight EarCNO,2000Hz Right Ear CNO,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 100PM,2DaysBeforeYesterday ActivityNumber 100PM,standard,PhenX Toolkit
+Annoyed With Stimulants For Myself,Annoyed With Myself For Stimulants,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Depression prior Month,AddictionSeverity Depression Past Month,replace keywords,PhenX Toolkit
+AIDS Date Onset Year,AIDS Date Of Onset Year,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 100pm work list,2DaysBeforeYesterday ActivityNumber 100PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber1100AM Other,2DaysBeforeYesterday ActivityNumber 1100AM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1100PM Work List,2DaysBeforeYesterday ActivityNumber 1100PM Work List,standard,PhenX Toolkit
+Anxiety Tidy And Clean,Anxiety Clean And Tidy,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Incarcerated Last chg,AddictionSeverity Incarcerated Last Charge,replace keywords,PhenX Toolkit
+Ability Start Conversation Children,Ability Start Conversation Other Children,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 1130am Work list,2DaysBeforeYesterday ActivityNumber 1130AM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 1230PM Other,2DaysBeforeYesterday ActivityNumber 1230PM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 130PM Other,2DaysBeforeYesterday ActivityNumber 130PM Other,standard,PhenX Toolkit
+Help For Asked,Asked For Help,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Martial sts,AddictionSeverity Martial Status,replace keywords,PhenX Toolkit
+Ability Get Message Across,Ability To Get Message Across,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 130PM work list,2DaysBeforeYesterday ActivityNumber 130PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber200PM Work List,2DaysBeforeYesterday ActivityNumber 200PM Work List,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 230PM Other,2DaysBeforeYesterday ActivityNumber 230PM Other,standard,PhenX Toolkit
+Autoimmune Diseases SLE Or Lupus,Autoimmune Diseases Lupus Or SLE,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity PaidDays prior Month,AddictionSeverity PaidDays Past Month,replace keywords,PhenX Toolkit
+Able Drink More Stimulants,Able To Drink More Stimulants,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 230pm work List,2DaysBeforeYesterday ActivityNumber 230PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber400PMOther,2DaysBeforeYesterday ActivityNumber 400PM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 400PM Work List,2DaysBeforeYesterday ActivityNumber 400PM Work List,standard,PhenX Toolkit
+Blames Mistakes For Others,Blames Others For Mistakes,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Prescribed Medication prior Month,AddictionSeverity Prescribed Medication Past Month,replace keywords,PhenX Toolkit
+Activities Community 4h Clubs,Activities In Community 4h Clubs,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 630pm work list,2DaysBeforeYesterday ActivityNumber 630PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber700AM,2DaysBeforeYesterday ActivityNumber 700AM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 700PM Work List,2DaysBeforeYesterday ActivityNumber 700PM Work List,standard,PhenX Toolkit
+Cigarettes Boredom For Good,Cigarettes Good For Boredom,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity SeriousProblems Children prior Month,AddictionSeverity SeriousProblems Children Past Month,replace keywords,PhenX Toolkit
+Activities Community Service Clubs,Activities In Community Service Clubs,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 800pm,2DaysBeforeYesterday ActivityNumber 800PM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 830AM,2DaysBeforeYesterday ActivityNumber 830AM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 830PM Work List,2DaysBeforeYesterday ActivityNumber 830PM Work List,standard,PhenX Toolkit
+Conned Money For People,Conned People For Money,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity SeriousProblems Father prior Month,AddictionSeverity SeriousProblems Father Past Month,replace keywords,PhenX Toolkit
+AddictionSeverity Spent Drugs,AddictionSeverity Spent On Drugs,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 900AM other,2DaysBeforeYesterday ActivityNumber 900AM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel1000PM,2DaysBeforeYesterday ExertionLevel 1000PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 1100AM,2DaysBeforeYesterday ExertionLevel 1100AM,standard,PhenX Toolkit
+Excitement For Crave,Crave For Excitement,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity SeriousProblems Mother prior Month,AddictionSeverity SeriousProblems Mother Past Month,replace keywords,PhenX Toolkit
+Adherence Medication Often Decide Medicine,Adherence Medication Often Decide Not Medicine,remove stop words,PhenX Toolkit
+30 day Alcoholic beverag Use,30 Day Alcoholic Beverage Use,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel1130AM,2DaysBeforeYesterday ExertionLevel 1130AM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 1200PM,2DaysBeforeYesterday ExertionLevel 1200PM,standard,PhenX Toolkit
+Days In Prison Or Jail,Days In Jail Or Prison,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity SeriousProblems Partner prior Month,AddictionSeverity SeriousProblems Partner Past Month,replace keywords,PhenX Toolkit
+Adherence Medication Often Refill Medicine Cost Money,Adherence Medication Often Not Refill Medicine Cost Money,remove stop words,PhenX Toolkit
+30 Day Heroin without needl use,30 Day Heroin Without Needle Use,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel300PM,2DaysBeforeYesterday ExertionLevel 300PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 330PM,2DaysBeforeYesterday ExertionLevel 330PM,standard,PhenX Toolkit
+Do Fun For Things,Do Things For Fun,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity SeriousProblems Siblings prior Month,AddictionSeverity SeriousProblems Siblings Past Month,replace keywords,PhenX Toolkit
+Adipocytokines Coefficient Variation,Adipocytokines Coefficient Of Variation,remove stop words,PhenX Toolkit
+30 Day methamphetamin use,30 Day Methamphetamine Use,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel500PM,2DaysBeforeYesterday ExertionLevel 500PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 530PM,2DaysBeforeYesterday ExertionLevel 530PM,standard,PhenX Toolkit
+Drug Aftereffects For Medicine,Drug Medicine For Aftereffects,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Suicidal Thoughts prior Month,AddictionSeverity Suicidal Thoughts Past Month,replace keywords,PhenX Toolkit
+Administrative Assistant Know Spouse Partner,Administrative Assistant Know Through Spouse Partner,remove stop words,PhenX Toolkit
+30 Day quaalud use,30 Day Quaalude Use,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel630PM,2DaysBeforeYesterday ExertionLevel 630PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 730AM,2DaysBeforeYesterday ExertionLevel 730AM,standard,PhenX Toolkit
+EatingScale Child Food For AlwaysAsking,EatingScale Child AlwaysAsking For Food,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Troubled alc Problems,AddictionSeverity Troubled Alcohol Problems,replace keywords,PhenX Toolkit
+Administrative Assistant Relationship Specify,Administrative Assistant Relationship Other Specify,remove stop words,PhenX Toolkit
+30 day sed Use,30 Day Sedative Use,remove suffix,PhenX Toolkit

alcohol_100_bacteria_0/ood_test.csv

@@ -0,0 +1,101 @@
+representation,harmonization_standard,variation_type,source_terminology
+30 Or 11 MCQ,11 Or 30 MCQ,swap words around conjunctions,PhenX Toolkit
+action On Immediate Needs,Act On Immediate Needs,replace keywords,PhenX Toolkit
+20 Drinks One Day,20 Drinks In One Day,remove stop words,PhenX Toolkit
+12 Month alcohol Beverage use,12 Month Alcoholic Beverage Use,remove suffix,PhenX Toolkit
+12Month CrackUse,12 Month Crack Use,remove punctuation,PhenX Toolkit
+12 Month Heroin Without Needle Use,12 Month Heroin Without Needle Use,standard,PhenX Toolkit
+35 Or 24 MCQ,24 Or 35 MCQ,swap words around conjunctions,PhenX Toolkit
+action Out Dreams HowOften Years,Act Out Dreams HowOften Years,replace keywords,PhenX Toolkit
+20Week Weight Lbs Coded,20Week Weight Before Lbs Coded,remove stop words,PhenX Toolkit
+20drink one Day FirstTime age,20Drinks One Day FirstTime Age,remove suffix,PhenX Toolkit
+12Month Provigil Use,12 Month Provigil Use,remove punctuation,PhenX Toolkit
+12 Month Salvia Use,12 Month Salvia Use,standard,PhenX Toolkit
+30 Or 25 MCQ,25 Or 30 MCQ,swap words around conjunctions,PhenX Toolkit
+action Without Thinking When Happy,Act Without Thinking When Happy,replace keywords,PhenX Toolkit
+28 30 MCQ,28 Or 30 MCQ,remove stop words,PhenX Toolkit
+20drink One Day LastTime Age,20Drinks One Day LastTime Age,remove suffix,PhenX Toolkit
+2000Hz LeftEar CNO,2000Hz Left Ear CNO,remove punctuation,PhenX Toolkit
+20Drinks One Day LastTime Month,20Drinks One Day LastTime Month,standard,PhenX Toolkit
+85 Or 31 MCQ,31 Or 85 MCQ,swap words around conjunctions,PhenX Toolkit
+act Or Postural Tremor LUE,Action Or Postural Tremor LUE,replace keywords,PhenX Toolkit
+30 Day Inhaled Gas Spray Use,30 Day Inhaled Gas Or Spray Use,remove stop words,PhenX Toolkit
+20Week weight gain code,20Week Weight Gained Coded,remove suffix,PhenX Toolkit
+20Week WeightGained Lbs,20Week Weight Gained Lbs,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1000AM Other,2DaysBeforeYesterday ActivityNumber 1000AM Other,standard,PhenX Toolkit
+35 Or 34 MCQ,34 Or 35 MCQ,swap words around conjunctions,PhenX Toolkit
+act Or Postural Tremor RUE,Action Or Postural Tremor RUE,replace keywords,PhenX Toolkit
+30 Day Hallucinogen Use,30 Day Other Hallucinogen Use,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 1000am Work List,2DaysBeforeYesterday ActivityNumber 1000AM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 1000PMWork List,2DaysBeforeYesterday ActivityNumber 1000PM Work List,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 100PM Other,2DaysBeforeYesterday ActivityNumber 100PM Other,standard,PhenX Toolkit
+55 Or 40 MCQ,40 Or 55 MCQ,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity adm Criminal Justice,AddictionSeverity Admission Criminal Justice,replace keywords,PhenX Toolkit
+30Day Cocaine Using Getting,30Day Cocaine Using Getting Over,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 1030AM,2DaysBeforeYesterday ActivityNumber 1030AM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 1030AM Other,2DaysBeforeYesterday ActivityNumber 1030AM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1030PM,2DaysBeforeYesterday ActivityNumber 1030PM,standard,PhenX Toolkit
+75 Or 41 MCQ,41 Or 75 MCQ,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity alc AnyUse Administration,AddictionSeverity Alcohol AnyUse Administration,replace keywords,PhenX Toolkit
+47 50 MCQ,47 Or 50 MCQ,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 1130PM work List,2DaysBeforeYesterday ActivityNumber 1130PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 1200PMOther,2DaysBeforeYesterday ActivityNumber 1200PM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1200PM Work List,2DaysBeforeYesterday ActivityNumber 1200PM Work List,standard,PhenX Toolkit
+60 Or 49 MCQ,49 Or 60 MCQ,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity alc AnyUse Lifetime,AddictionSeverity Alcohol AnyUse Lifetime,replace keywords,PhenX Toolkit
+54 80 MCQ,54 Or 80 MCQ,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 1230PM,2DaysBeforeYesterday ActivityNumber 1230PM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber200PM Other,2DaysBeforeYesterday ActivityNumber 200PM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 300PM,2DaysBeforeYesterday ActivityNumber 300PM,standard,PhenX Toolkit
+85 Or 69 MCQ,69 Or 85 MCQ,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity alc AnyUse PastMonth,AddictionSeverity Alcohol AnyUse PastMonth,replace keywords,PhenX Toolkit
+Ability Focus Better Stimulants,Ability Focus Is Better Stimulants,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 300pm work List,2DaysBeforeYesterday ActivityNumber 300PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber330PMOther,2DaysBeforeYesterday ActivityNumber 330PM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 400PM,2DaysBeforeYesterday ActivityNumber 400PM,standard,PhenX Toolkit
+Tense Or Anxious Stimulants,Anxious Or Tense Stimulants,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Alcohol Problems prior Month,AddictionSeverity Alcohol Problems Past Month,replace keywords,PhenX Toolkit
+Ability Make GrownUp Sentences,Ability To Make GrownUp Sentences,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 430pm Other,2DaysBeforeYesterday ActivityNumber 430PM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber500PM,2DaysBeforeYesterday ActivityNumber 500PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 530PM Other,2DaysBeforeYesterday ActivityNumber 530PM Other,standard,PhenX Toolkit
+Measurement For Arm,Arm For Measurement,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity alc ToIntoxication Administration,AddictionSeverity Alcohol ToIntoxication Administration,replace keywords,PhenX Toolkit
+Able Control Irritations,Able To Control Irritations,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 530PM Work list,2DaysBeforeYesterday ActivityNumber 530PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber600PM Other,2DaysBeforeYesterday ActivityNumber 600PM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 700AM Work List,2DaysBeforeYesterday ActivityNumber 700AM Work List,standard,PhenX Toolkit
+Fainting Or Blackouts,Blackouts Or Fainting,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Detox alc,AddictionSeverity Detox Alcohol,replace keywords,PhenX Toolkit
+Activities Community Sports Teams,Activities In Community Sports Teams,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 700PM,2DaysBeforeYesterday ActivityNumber 700PM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 700PMOther,2DaysBeforeYesterday ActivityNumber 700PM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 730AM Other,2DaysBeforeYesterday ActivityNumber 730AM Other,standard,PhenX Toolkit
+FEF90 Or Blank4,Blank4 Or FEF90,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Emotional Abuse prior Month,AddictionSeverity Emotional Abuse Past Month,replace keywords,PhenX Toolkit
+AddictionSeverity Arrested,AddictionSeverity Arrested Other,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 730AM work list,2DaysBeforeYesterday ActivityNumber 730AM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber730PMOther,2DaysBeforeYesterday ActivityNumber 730PM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 800AM Work List,2DaysBeforeYesterday ActivityNumber 800AM Work List,standard,PhenX Toolkit
+Child Care Quality Younger Anyone Baby For Caring,Child Care Quality Younger Anyone Caring For Baby,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Incarcerated prior Month,AddictionSeverity Incarcerated Past Month,replace keywords,PhenX Toolkit
+AddictionSeverity Spent Alcohol,AddictionSeverity Spent On Alcohol,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 800pm other,2DaysBeforeYesterday ActivityNumber 800PM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 830AMOther,2DaysBeforeYesterday ActivityNumber 830AM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 830PM,2DaysBeforeYesterday ActivityNumber 830PM,standard,PhenX Toolkit
+Clear Grades For Expectations,Clear Expectations For Grades,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Living Arrangements alc Problems,AddictionSeverity Living Arrangements Alcohol Problems,replace keywords,PhenX Toolkit
+Adherence Medication Often Skip Dose Medicine Doctor,Adherence Medication Often Skip Dose Medicine Before Doctor,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 900am work List,2DaysBeforeYesterday ActivityNumber 900AM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber900PM,2DaysBeforeYesterday ActivityNumber 900PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 930AM,2DaysBeforeYesterday ActivityNumber 930AM,standard,PhenX Toolkit
+Consider Bad And Good Things,Consider Good And Bad Things,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Martial sts Satisified,AddictionSeverity Martial Status Satisified,replace keywords,PhenX Toolkit
+Administrative Assistant Race Ethnicity Specify,Administrative Assistant Race Ethnicity Other Specify,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 930am Other,2DaysBeforeYesterday ActivityNumber 930AM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel 1000AM,2DaysBeforeYesterday ExertionLevel 1000AM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 100PM,2DaysBeforeYesterday ExertionLevel 100PM,standard,PhenX Toolkit
+Days Training Or School,Days School Or Training,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Outpatient prior Month,AddictionSeverity Outpatient Past Month,replace keywords,PhenX Toolkit
+Adult Children Alcoholic,Adult Children Of Alcoholic,remove stop words,PhenX Toolkit
+3 month chest Attack Times,3 Months Chest Attack Times,remove suffix,PhenX Toolkit

alcohol_100_bacteria_0/train.csv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:0707547a348dfaf6b353bda8977a4b2642629783e248295ada12f2041bb61b9d
+size 42537620

alcohol_100_bacteria_0/valid.csv

@@ -0,0 +1,201 @@
+representation,harmonization_standard,variation_type,source_terminology
+2DaysBeforeYesterday ActivityNumber 300PM Other,2DaysBeforeYesterday ActivityNumber 300PM Other,standard,PhenX Toolkit
+12 Month ketamin Use,12 Month Ketamine Use,remove suffix,PhenX Toolkit
+80 Or 33 MCQ,33 Or 80 MCQ,swap words around conjunctions,PhenX Toolkit
+Adherence Medication Often Refill Medicine Cost Money,Adherence Medication Often Not Refill Medicine Cost Money,remove stop words,PhenX Toolkit
+Activities Community 4h Clubs,Activities In Community 4h Clubs,remove stop words,PhenX Toolkit
+AddictionSeverity PaidDays prior Month,AddictionSeverity PaidDays Past Month,replace keywords,PhenX Toolkit
+2daysbeforeyesterday activitynumb 1100AM,2DaysBeforeYesterday ActivityNumber 1100AM,remove suffix,PhenX Toolkit
+Adipocytokines Coefficient Variation,Adipocytokines Coefficient Of Variation,remove stop words,PhenX Toolkit
+Do Fun For Things,Do Things For Fun,swap words around conjunctions,PhenX Toolkit
+20week Weight Gained kg,20Week Weight Gained Kgs,remove suffix,PhenX Toolkit
+Adults Gotten High Or Drunk,Adults Gotten Drunk Or High,swap words around conjunctions,PhenX Toolkit
+Administrative Assistant Relationship Specify,Administrative Assistant Relationship Other Specify,remove stop words,PhenX Toolkit
+30 day amphetamin Use,30 Day Amphetamines Use,remove suffix,PhenX Toolkit
+Anxiety Tidy And Clean,Anxiety Clean And Tidy,swap words around conjunctions,PhenX Toolkit
+Drug Aftereffects For Medicine,Drug Medicine For Aftereffects,swap words around conjunctions,PhenX Toolkit
+30 Day Heroin without needl use,30 Day Heroin Without Needle Use,remove suffix,PhenX Toolkit
+78 80 MCQ,78 Or 80 MCQ,remove stop words,PhenX Toolkit
+Adherence Medication Often Forget Take Medicine Day,Adherence Medication Often Forget Take Medicine More Than Once Day,remove stop words,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 1200PM,2DaysBeforeYesterday ActivityNumber 1200PM,remove punctuation,PhenX Toolkit
+AIDS Date Onset Month,AIDS Date Of Onset Month,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber700PMWorkList,2DaysBeforeYesterday ActivityNumber 700PM Work List,remove punctuation,PhenX Toolkit
+12MonthKreteksUse,12 Month Kreteks Use,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber930AM Work List,2DaysBeforeYesterday ActivityNumber 930AM Work List,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 230pm,2DaysBeforeYesterday ActivityNumber 230PM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1030PM Other,2DaysBeforeYesterday ActivityNumber 1030PM Other,standard,PhenX Toolkit
+85 Or 80 MCQ,80 Or 85 MCQ,swap words around conjunctions,PhenX Toolkit
+Upset And Anxious LSD,Anxious And Upset LSD,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity alc Treatment,AddictionSeverity Alcohol Treatment,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 730PM Work List,2DaysBeforeYesterday ActivityNumber 730PM Work List,standard,PhenX Toolkit
+Cocaine Need Effect For More,Cocaine Need More For Effect,swap words around conjunctions,PhenX Toolkit
+12 Month creatin use,12 Month Creatine Use,remove suffix,PhenX Toolkit
+60 Or 25 MCQ,25 Or 60 MCQ,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity alc ToIntoxication Lifetime,AddictionSeverity Alcohol ToIntoxication Lifetime,replace keywords,PhenX Toolkit
+2daysbeforeyesterday activitynumb 1100PM Work List,2DaysBeforeYesterday ActivityNumber 1100PM Work List,remove suffix,PhenX Toolkit
+Days In Prison Or Jail,Days In Jail Or Prison,swap words around conjunctions,PhenX Toolkit
+Able Pace,Able To Pace Myself,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 800PM work list,2DaysBeforeYesterday ActivityNumber 800PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 830AM Work List,2DaysBeforeYesterday ActivityNumber 830AM Work List,standard,PhenX Toolkit
+Adherence Medication Often Run Medicine,Adherence Medication Often Run Out Medicine,remove stop words,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 1130AM,2DaysBeforeYesterday ActivityNumber 1130AM,remove punctuation,PhenX Toolkit
+AddictionSeverity Criminal Activity prior Month,AddictionSeverity Criminal Activity Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 500PM,2DaysBeforeYesterday ExertionLevel 500PM,standard,PhenX Toolkit
+30Day Marijuana Using Getting,30Day Marijuana Using Getting Over,remove stop words,PhenX Toolkit
+50 Or 27 MCQ,27 Or 50 MCQ,swap words around conjunctions,PhenX Toolkit
+Actions Lead Trouble,Actions Lead To Trouble,remove stop words,PhenX Toolkit
+30 day sed Use,30 Day Sedative Use,remove suffix,PhenX Toolkit
+12 Month Quaalude Use,12 Month Quaalude Use,standard,PhenX Toolkit
+action Spur Of Moment,Act Spur Of Moment,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 900AM Other,2DaysBeforeYesterday ActivityNumber 900AM Other,standard,PhenX Toolkit
+Ability Use Proper Words,Ability To Use Proper Words,remove stop words,PhenX Toolkit
+FEF50 Or Blank2,Blank2 Or FEF50,swap words around conjunctions,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 1130PM,2DaysBeforeYesterday ExertionLevel 1130PM,standard,PhenX Toolkit
+12 Month Cocaine Use,12 Month Cocaine Use,standard,PhenX Toolkit
+Cigarettes Boredom For Good,Cigarettes Good For Boredom,swap words around conjunctions,PhenX Toolkit
+2daysbeforeyesterday activitynumb 630PM Other,2DaysBeforeYesterday ActivityNumber 630PM Other,remove suffix,PhenX Toolkit
+AddictionSeverity Anxiety prior Month,AddictionSeverity Anxiety Past Month,replace keywords,PhenX Toolkit
+Acute Bleeding Symptoms Have,Acute Bleeding Symptoms Did Have,remove stop words,PhenX Toolkit
+Able Drink More Stimulants,Able To Drink More Stimulants,remove stop words,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel1130AM,2DaysBeforeYesterday ExertionLevel 1130AM,remove punctuation,PhenX Toolkit
+Autoimmune Diseases SLE Or Lupus,Autoimmune Diseases Lupus Or SLE,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity SeriousProblems OtherFamily prior Month,AddictionSeverity SeriousProblems OtherFamily Past Month,replace keywords,PhenX Toolkit
+AddictionSeverity Hallucinations prior Month,AddictionSeverity Hallucinations Past Month,replace keywords,PhenX Toolkit
+action Without Thinking When Excited,Act Without Thinking When Excited,replace keywords,PhenX Toolkit
+25 Or 22 MCQ,22 Or 25 MCQ,swap words around conjunctions,PhenX Toolkit
+12 Month Rohypnol Use,12 Month Rohypnol Use,standard,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 700AM,2DaysBeforeYesterday ActivityNumber 700AM,standard,PhenX Toolkit
+55 Or 54 MCQ,54 Or 55 MCQ,swap words around conjunctions,PhenX Toolkit
+30 day other cocain use,30 Day Other Cocaine Use,remove suffix,PhenX Toolkit
+Ask Mom Help For Dad,Ask Mom Dad For Help,swap words around conjunctions,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 830AM,2DaysBeforeYesterday ActivityNumber 830AM,remove punctuation,PhenX Toolkit
+2daysbeforeyesterday activitynumb 1000PM Other,2DaysBeforeYesterday ActivityNumber 1000PM Other,remove suffix,PhenX Toolkit
+AddictionSeverity Prescribed Medication prior Month,AddictionSeverity Prescribed Medication Past Month,replace keywords,PhenX Toolkit
+Diverticulosis Or Diverticulitis,Diverticulitis Or Diverticulosis,swap words around conjunctions,PhenX Toolkit
+12 Month Vicodin Use,12 Month Vicodin Use,standard,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber630PM Work List,2DaysBeforeYesterday ActivityNumber 630PM Work List,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 600PM Work List,2DaysBeforeYesterday ActivityNumber 600PM Work List,standard,PhenX Toolkit
+30 Day Heroin Needle Use,30 Day Heroin With Needle Use,remove stop words,PhenX Toolkit
+AddictionSeverity SeriousProblems CloseFriends prior Month,AddictionSeverity SeriousProblems CloseFriends Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber330PM Work List,2DaysBeforeYesterday ActivityNumber 330PM Work List,remove punctuation,PhenX Toolkit
+2daysbeforeyesterday activitynumb 500PM work list,2DaysBeforeYesterday ActivityNumber 500PM Work List,remove suffix,PhenX Toolkit
+12 Month Heroin Needle Use,12 Month Heroin With Needle Use,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1130AM Work List,2DaysBeforeYesterday ActivityNumber 1130AM Work List,standard,PhenX Toolkit
+2000HzRight EarCNO,2000Hz Right Ear CNO,remove punctuation,PhenX Toolkit
+AddictionSeverity Suicidal Thoughts prior Month,AddictionSeverity Suicidal Thoughts Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 330PM,2DaysBeforeYesterday ExertionLevel 330PM,standard,PhenX Toolkit
+AddictionSeverity Depression prior Month,AddictionSeverity Depression Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 1030PM,2DaysBeforeYesterday ExertionLevel 1030PM,standard,PhenX Toolkit
+50 Or 34 MCQ,34 Or 50 MCQ,swap words around conjunctions,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel230PM,2DaysBeforeYesterday ExertionLevel 230PM,remove punctuation,PhenX Toolkit
+AddictionSeverity alc ToIntoxication PastMonth,AddictionSeverity Alcohol ToIntoxication PastMonth,replace keywords,PhenX Toolkit
+12Month MDMAUse,12 Month MDMA Use,remove punctuation,PhenX Toolkit
+2daysbeforeyesterday activitynumb 830pm other,2DaysBeforeYesterday ActivityNumber 830PM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 400PM Work List,2DaysBeforeYesterday ActivityNumber 400PM Work List,standard,PhenX Toolkit
+12 month sed use,12 Month Sedative Use,remove suffix,PhenX Toolkit
+12 Month Heroin Use,12 Month Heroin Use,standard,PhenX Toolkit
+Affected Side Complications Numbness,Affected Side Complications With Numbness,remove stop words,PhenX Toolkit
+30 day Alcoholic beverag Use,30 Day Alcoholic Beverage Use,remove suffix,PhenX Toolkit
+55 Or 20 MCQ,20 Or 55 MCQ,swap words around conjunctions,PhenX Toolkit
+12 month other cocain use,12 Month Other Cocaine Use,remove suffix,PhenX Toolkit
+FEF75 Or Blank3,Blank3 Or FEF75,swap words around conjunctions,PhenX Toolkit
+12 MonthAndroUse,12 Month Andro Use,remove punctuation,PhenX Toolkit
+30 Day Narcotic Use,30 Day Other Narcotic Use,remove stop words,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 900AM,2DaysBeforeYesterday ActivityNumber 900AM,remove punctuation,PhenX Toolkit
+AddictionSeverity SeriousProblems Coworkers prior Month,AddictionSeverity SeriousProblems Coworkers Past Month,replace keywords,PhenX Toolkit
+AddictionSeverity Martial sts,AddictionSeverity Martial Status,replace keywords,PhenX Toolkit
+Excitement For Crave,Crave For Excitement,swap words around conjunctions,PhenX Toolkit
+12MonthCrystal Meth Use,12 Month Crystal Meth Use,remove punctuation,PhenX Toolkit
+AIDS Date Onset Day,AIDS Date Of Onset Day,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber600PM,2DaysBeforeYesterday ActivityNumber 600PM,remove punctuation,PhenX Toolkit
+Acute Bleeding Take Factor Than Prescribed,Acute Bleeding Take More Factor Than Prescribed,remove stop words,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel1100AM,2DaysBeforeYesterday ExertionLevel 1100AM,remove punctuation,PhenX Toolkit
+35 Or 15 MCQ,15 Or 35 MCQ,swap words around conjunctions,PhenX Toolkit
+EatingScale Child Drink For AlwaysAsking,EatingScale Child AlwaysAsking For Drink,swap words around conjunctions,PhenX Toolkit
+2daysbeforeyesterday activitynumb 930pm other,2DaysBeforeYesterday ActivityNumber 930PM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 1100AM Work List,2DaysBeforeYesterday ActivityNumber 1100AM Work List,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 700am other,2DaysBeforeYesterday ActivityNumber 700AM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber1030AM WorkList,2DaysBeforeYesterday ActivityNumber 1030AM Work List,remove punctuation,PhenX Toolkit
+30Day Opiates Using Getting,30Day Opiates Using Getting Over,remove stop words,PhenX Toolkit
+AddictionSeverity SeriousProblems Neighbors prior Month,AddictionSeverity SeriousProblems Neighbors Past Month,replace keywords,PhenX Toolkit
+12 Month OxyContinUse,12 Month OxyContin Use,remove punctuation,PhenX Toolkit
+12 Month SteroidUse,12 Month Steroid Use,remove punctuation,PhenX Toolkit
+FEF25 Or Blank1,Blank1 Or FEF25,swap words around conjunctions,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 1000PM,2DaysBeforeYesterday ExertionLevel 1000PM,standard,PhenX Toolkit
+Cheerful Or Depressed,Depressed Or Cheerful,swap words around conjunctions,PhenX Toolkit
+action Without Thinking Make Worse,Act Without Thinking Make Worse,replace keywords,PhenX Toolkit
+12 Month Marijuana Hashish Use,12 Month Marijuana Hashish Use,standard,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel130PM,2DaysBeforeYesterday ExertionLevel 130PM,remove punctuation,PhenX Toolkit
+2daysbeforeyesterday activitynumb 900pm other,2DaysBeforeYesterday ActivityNumber 900PM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 1130pm other,2DaysBeforeYesterday ActivityNumber 1130PM Other,remove suffix,PhenX Toolkit
+12 Month tranquil Use,12 Month Tranquilizer Use,remove suffix,PhenX Toolkit
+Do Almost Cigarette For Anything,Do Almost Anything For Cigarette,swap words around conjunctions,PhenX Toolkit
+2000Hz Threshold Left Ear,2000Hz Threshold Left Ear,standard,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 230PM Other,2DaysBeforeYesterday ActivityNumber 230PM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber930PMWorkList,2DaysBeforeYesterday ActivityNumber 930PM Work List,remove punctuation,PhenX Toolkit
+Activity content,Activity Level,replace keywords,PhenX Toolkit
+Consider All Disadvantages And Advantages,Consider All Advantages And Disadvantages,swap words around conjunctions,PhenX Toolkit
+12 Month amphetamin use,12 Month Amphetamines Use,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 430PM,2DaysBeforeYesterday ActivityNumber 430PM,remove suffix,PhenX Toolkit
+2000HzRestest Left Ear CNO,2000HzRestest Left Ear CNO,standard,PhenX Toolkit
+AddictionSeverity SeriousProblems Children prior Month,AddictionSeverity SeriousProblems Children Past Month,replace keywords,PhenX Toolkit
+Drink Effect For Less,Drink Less For Effect,swap words around conjunctions,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel 1200PM,2DaysBeforeYesterday ExertionLevel 1200PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 200PM,2DaysBeforeYesterday ExertionLevel 200PM,standard,PhenX Toolkit
+AddictionSeverity alc Delerious Tremors,AddictionSeverity Alcohol Delerious Tremors,replace keywords,PhenX Toolkit
+Ability Get Message Across,Ability To Get Message Across,remove stop words,PhenX Toolkit
+12Month RitalinUse,12 Month Ritalin Use,remove punctuation,PhenX Toolkit
+action Excited Marijuana,Act Excited Marijuana,replace keywords,PhenX Toolkit
+Accomplish Less Vision,Accomplish Less Because Vision,remove stop words,PhenX Toolkit
+AddictionSeverity EmploymentProblems prior Month,AddictionSeverity EmploymentProblems Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1230PM Other,2DaysBeforeYesterday ActivityNumber 1230PM Other,standard,PhenX Toolkit
+Administrative Assistant Know Spouse Partner,Administrative Assistant Know Through Spouse Partner,remove stop words,PhenX Toolkit
+AddictionSeverity Sexual Abuse prior Month,AddictionSeverity Sexual Abuse Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 200PM,2DaysBeforeYesterday ActivityNumber 200PM,standard,PhenX Toolkit
+12 Month Inhaled Gas Spray Use,12 Month Inhaled Gas Or Spray Use,remove stop words,PhenX Toolkit
+action Out Dreams HowOften Months,Act Out Dreams HowOften Months,replace keywords,PhenX Toolkit
+2000HzRestest Threshold Right Ear,2000HzRestest Threshold Right Ear,standard,PhenX Toolkit
+30 Day cocain use,30 Day Cocaine Use,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 800PM,2DaysBeforeYesterday ActivityNumber 800PM,standard,PhenX Toolkit
+12 Month LSD Use,12 Month LSD Use,standard,PhenX Toolkit
+Annoyed With Stimulants For Myself,Annoyed With Myself For Stimulants,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity SeriousProblems Partner prior Month,AddictionSeverity SeriousProblems Partner Past Month,replace keywords,PhenX Toolkit
+Activities Community Service Clubs,Activities In Community Service Clubs,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 1100PM,2DaysBeforeYesterday ExertionLevel 1100PM,standard,PhenX Toolkit
+30 Day methamphetamin use,30 Day Methamphetamine Use,remove suffix,PhenX Toolkit
+2daysbeforeyesterday activitynumb 100pm work list,2DaysBeforeYesterday ActivityNumber 100PM Work List,remove suffix,PhenX Toolkit
+75 Or 55 MCQ,55 Or 75 MCQ,swap words around conjunctions,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 500PM Other,2DaysBeforeYesterday ActivityNumber 500PM Other,standard,PhenX Toolkit
+30Day OtherDrugs Using Getting,30Day OtherDrugs Using Getting Over,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel430PM,2DaysBeforeYesterday ExertionLevel 430PM,remove punctuation,PhenX Toolkit
+2000HzRestest ThresholdLeftEar,2000HzRestest Threshold Left Ear,remove punctuation,PhenX Toolkit
+60 Or 54 MCQ,54 Or 60 MCQ,swap words around conjunctions,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 130PM WorkList,2DaysBeforeYesterday ActivityNumber 130PM Work List,remove punctuation,PhenX Toolkit
+12 month methamphetamin use,12 Month Methamphetamine Use,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 100pm,2DaysBeforeYesterday ActivityNumber 100PM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel1030AM,2DaysBeforeYesterday ExertionLevel 1030AM,remove punctuation,PhenX Toolkit
+Drink Or Eat,Eat Or Drink,swap words around conjunctions,PhenX Toolkit
+2daysbeforeyesterday activitynumb 800am,2DaysBeforeYesterday ActivityNumber 800AM,remove suffix,PhenX Toolkit
+action Without Thinking When Upset,Act Without Thinking When Upset,replace keywords,PhenX Toolkit
+AddictionSeverity SeriousProblems Mother prior Month,AddictionSeverity SeriousProblems Mother Past Month,replace keywords,PhenX Toolkit
+AddictionSeverity Treatment alc Problems,AddictionSeverity Treatment Alcohol Problems,replace keywords,PhenX Toolkit
+30 Days Ecig Flavor i,30 Days Ecig Flavor Indicator,replace keywords,PhenX Toolkit
+2000Hz Threshold RightEar,2000Hz Threshold Right Ear,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 930PM,2DaysBeforeYesterday ActivityNumber 930PM,standard,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 800AMOther,2DaysBeforeYesterday ActivityNumber 800AM Other,remove punctuation,PhenX Toolkit
+AddictionSeverity SeriousProblems Father prior Month,AddictionSeverity SeriousProblems Father Past Month,replace keywords,PhenX Toolkit
+AddictionSeverity Incarcerated Last chg,AddictionSeverity Incarcerated Last Charge,replace keywords,PhenX Toolkit
+2daysbeforeyesterday activitynumb 330pm,2DaysBeforeYesterday ActivityNumber 330PM,remove suffix,PhenX Toolkit
+Actigraph Returned,Actigraph Not Returned,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 1230PM Work list,2DaysBeforeYesterday ActivityNumber 1230PM Work List,remove suffix,PhenX Toolkit
+Ability Start Conversation Children,Ability Start Conversation Other Children,remove stop words,PhenX Toolkit
+AddictionSeverity Physical Abuse prior Month,AddictionSeverity Physical Abuse Past Month,replace keywords,PhenX Toolkit
+AddictionSeverity TroubleUnderstanding prior Month,AddictionSeverity TroubleUnderstanding Past Month,replace keywords,PhenX Toolkit
+20Week Weight Lbs,20Week Weight Before Lbs,remove stop words,PhenX Toolkit
+Adults Done Other Things,Adults Who Done Other Things,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1100PM,2DaysBeforeYesterday ActivityNumber 1100PM,standard,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber430PM WorkList,2DaysBeforeYesterday ActivityNumber 430PM Work List,remove punctuation,PhenX Toolkit
+12 Month Narcotic Use,12 Month Other Narcotic Use,remove stop words,PhenX Toolkit
+Ability Understand Others Say,Ability Understand What Others Say,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 1230PM,2DaysBeforeYesterday ExertionLevel 1230PM,standard,PhenX Toolkit
+Money For Begged,Begged For Money,swap words around conjunctions,PhenX Toolkit

alcohol_25_bacteria_75/id_test.csv

@@ -0,0 +1,101 @@
+representation,harmonization_standard,variation_type,source_terminology
+Xanthomonas sp. Pd-E-l-D-9(20),Xanthomonas sp. Pd-E-(s)-l-D-9(20),remove unit,NCBI
+Acinetobacter sp. Bouvet382,Acinetobacter sp. Bouvet382(K.Irino 105/85),remove text in grouping syms,NCBI
+25 Or 19 MCQ,19 Or 25 MCQ,swap words around conjunctions,PhenX Toolkit
+Acinetobacter sp. 502010,Acinetobacter sp. 50(2010),remove grouping syms,NCBI
+30 Days Ecig Flavor i,30 Days Ecig Flavor Indicator,replace keywords,PhenX Toolkit
+12 Month Cocaine Use,12 Month Other Cocaine Use,remove stop words,PhenX Toolkit
+'Citrus sinensis' phytoplasma,'Citrus sinensis',user rep,(Derived) Bacteria Root
+'Amaranth chlorisi' phytoplasma,'Amaranth chlorisis' phytoplasma,remove suffix,NCBI
+'Carpoxylon macrospermum'phytoplasma,'Carpoxylon macrospermum' phytoplasma,remove punctuation,NCBI
+'Cinnamomum camphora' witches'-broom phytoplasma,'Cinnamomum camphora' witches'-broom phytoplasma,standard,NCBI
+Arthrobacter sp. 167-4.2-CV-H26-02,Arthrobacter sp. 167-4.2-CV-H26(h)-02,remove text in grouping syms,NCBI
+80 Or 33 MCQ,33 Or 80 MCQ,swap words around conjunctions,PhenX Toolkit
+Acinetobacter sp. A342011,Acinetobacter sp. A34(2011),remove grouping syms,NCBI
+Acinetobacter sp. paid-112,Acinetobacter sp. P-112,replace keywords,NCBI
+2DaysBeforeYesterday ActivityNumber 200PM,2DaysBeforeYesterday ActivityNumber 200PM Other,remove stop words,PhenX Toolkit
+Acetobacter pomorum DM001,Acetobacter pomorum,user rep,(Derived) Bacteria Root
+'cleom rutidosperma' witch'-broom phytoplasma,'Cleome rutidosperma' witches'-broom phytoplasma,remove suffix,NCBI
+'Crotalariajunciea' asteryellows phytoplasma,'Crotalaria junciea' aster yellows phytoplasma,remove punctuation,NCBI
+'Croton sparsiflorus' phytoplasma,'Croton sparsiflorus' phytoplasma,standard,NCBI
+Microbacterium sp. G2W6,Microbacterium sp. G2W6(B),remove text in grouping syms,NCBI
+50 Or 47 MCQ,47 Or 50 MCQ,swap words around conjunctions,PhenX Toolkit
+Aeromonas sp. Ae22011,Aeromonas sp. Ae2(2011),remove grouping syms,NCBI
+AddictionSeverity SeriousProblems Mother prior Month,AddictionSeverity SeriousProblems Mother Past Month,replace keywords,PhenX Toolkit
+30Day OtherDrugs Using Getting,30Day OtherDrugs Using Getting Over,remove stop words,PhenX Toolkit
+Acidimicrobiia bacterium UBA6912,Acidimicrobiia bacterium,user rep,(Derived) Bacteria Root
+'dimocarpu longan' witches'-broom phytoplasma,'Dimocarpus longan' witches'-broom phytoplasma,remove suffix,NCBI
+'Empoascafabae' phytoplasma,'Empoasca fabae' phytoplasma,remove punctuation,NCBI
+'Macrotyloma uniflorum' phytoplasma,'Macrotyloma uniflorum' phytoplasma,standard,NCBI
+Nostoc sp. 'Peltigera dolichorhiza ) cyanobiont',Nostoc sp. 'Peltigera dolichorhiza (MagainSerusiaux1109_DNA2289(LG)) cyanobiont',remove text in grouping syms,NCBI
+80 Or 54 MCQ,54 Or 80 MCQ,swap words around conjunctions,PhenX Toolkit
+Aeromonas sp. Ae292011,Aeromonas sp. Ae29(2011),remove grouping syms,NCBI
+AddictionSeverity Spent On alc,AddictionSeverity Spent On Alcohol,replace keywords,PhenX Toolkit
+30Day Stimulants Using Getting,30Day Stimulants Using Getting Over,remove stop words,PhenX Toolkit
+Acidiphilum rubrum,Acidiphilium rubrum,user rep,NCBI
+'zinnia elegan' phyllodi phytoplasma,'Zinnia elegans' phyllody phytoplasma,remove suffix,NCBI
+'Spartiumjunceum' phytoplasmaSI04-S4,'Spartium junceum' phytoplasma SI04-S4,remove punctuation,NCBI
+"2,4-D-degrading bacterium TFD13","2,4-D-degrading bacterium TFD13",standard,NCBI
+Salegentibacter sp. DPA2_50.2mbsf,Salegentibacter sp. DPA2_(MB)_50.2mbsf,remove text in grouping syms,NCBI
+80 Or 78 MCQ,78 Or 80 MCQ,swap words around conjunctions,PhenX Toolkit
+Aeromonas sp. Ae712011,Aeromonas sp. Ae71(2011),remove grouping syms,NCBI
+AddictionSeverity Suicidal Thoughts prior Month,AddictionSeverity Suicidal Thoughts Past Month,replace keywords,PhenX Toolkit
+Able Stop Using Drugs,Able To Stop Using Drugs,remove stop words,PhenX Toolkit
+Acinetobacter sp. B301,Acinetobacter portensis,user rep,NCBI
+2DaysBeforeYesterday activitynumb 1030am Other,2DaysBeforeYesterday ActivityNumber 1030AM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber1030PM,2DaysBeforeYesterday ActivityNumber 1030PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1100PM,2DaysBeforeYesterday ActivityNumber 1100PM,standard,PhenX Toolkit
+Streptomyces sp. 196-3.2-CV-H26-06,Streptomyces sp. 196-3.2-CV-H26(h)-06,remove text in grouping syms,NCBI
+FEF75 Or Blank3,Blank3 Or FEF75,swap words around conjunctions,PhenX Toolkit
+Aeromonas sp. F102011,Aeromonas sp. F10(2011),remove grouping syms,NCBI
+alc Date,Alcohol Date,replace keywords,PhenX Toolkit
+Administrative Assistant Relationship Specify,Administrative Assistant Relationship Other Specify,remove stop words,PhenX Toolkit
+Acinetobacter sp. ANC 4900,Acinetobacter sp. A47,user rep,NCBI
+2daysbeforeyesterday activitynumb 200PM work List,2DaysBeforeYesterday ActivityNumber 200PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber430PM,2DaysBeforeYesterday ActivityNumber 430PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 930AM Work List,2DaysBeforeYesterday ActivityNumber 930AM Work List,standard,PhenX Toolkit
+Wolbachia endosymbiont of Coremacera marginata,Wolbachia endosymbiont (group A) of Coremacera marginata,remove text in grouping syms,NCBI
+Child Care Quality Younger Anyone Baby For Caring,Child Care Quality Younger Anyone Caring For Baby,swap words around conjunctions,PhenX Toolkit
+Afipia sp. PVC0.1X,Afipia sp. PVC(0.1)X,remove grouping syms,NCBI
+alc First Use Age Coded,Alcohol First Use Age Coded,replace keywords,PhenX Toolkit
+Affordability Problems Access Dental Care Delay Worry 3,Affordability Problems Access Dental Care Delay Worry Who 3,remove stop words,PhenX Toolkit
+Actinoalloteichus cyanogriseus DSM 43889,Actinoalloteichus caeruleus DSM 43889,user rep,NCBI
+2DaysBeforeYesterday activitynumb 930PM Work list,2DaysBeforeYesterday ActivityNumber 930PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel 300PM,2DaysBeforeYesterday ExertionLevel 300PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 730PM,2DaysBeforeYesterday ExertionLevel 730PM,standard,PhenX Toolkit
+Wolbachia endosymbiont of Parapoynx stratiotata,Wolbachia endosymbiont (group B) of Parapoynx stratiotata,remove text in grouping syms,NCBI
+Cocaine Need Effect For More,Cocaine Need More For Effect,swap words around conjunctions,PhenX Toolkit
+Agrobacterium sp. 16WI+_OTU30,Agrobacterium sp. 16WI(+)_OTU30,remove grouping syms,NCBI
+alc Lifetime Use Disorder Consume Much More,Alcohol Lifetime Use Disorder Consume Much More,replace keywords,PhenX Toolkit
+Marijuana High Feel Down,After Marijuana High Feel Down,remove stop words,PhenX Toolkit
+Actinobacillus pleuropneumoniae serovar 7,Actinobacillus pleuropneumoniae serovar,user rep,(Derived) Bacteria Root
+30 Day quaalud Use,30 Day Quaalude Use,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel 800PM,2DaysBeforeYesterday ExertionLevel 800PM,remove punctuation,PhenX Toolkit
+30 Day Crack Use,30 Day Crack Use,standard,PhenX Toolkit
+Wolbachia endosymbiont of Porcellionides pruinosus,Wolbachia endosymbiont of Porcellionides pruinosus (Tunis),remove text in grouping syms,NCBI
+Do Almost Cigarette For Anything,Do Almost Anything For Cigarette,swap words around conjunctions,PhenX Toolkit
+Alkalimonas sp. H22011,Alkalimonas sp. H2(2011),remove grouping syms,NCBI
+alc Lifetime Use Disorder Consume Twenty Drinks,Alcohol Lifetime Use Disorder Consume Twenty Drinks,replace keywords,PhenX Toolkit
+Stopping Depressed Last12Months,After Stopping Depressed Last12Months,remove stop words,PhenX Toolkit
+Actinomyces sp. ChDC B650,Actinomyces sp. ChDC,user rep,(Derived) Bacteria Root
+acaryochlori marina S1,Acaryochloris marina S1,remove suffix,NCBI
+30 DayMarijuana HashishUse,30 Day Marijuana Hashish Use,remove punctuation,PhenX Toolkit
+3000Hz Left Ear CNO,3000Hz Left Ear CNO,standard,PhenX Toolkit
+sp. KITNT-3,[Bacillus] sp. KITNT-3,remove text in grouping syms,NCBI
+First Go And Up,First Up And Go,swap words around conjunctions,PhenX Toolkit
+Alteromonas sp. N982010,Alteromonas sp. N98(2010),remove grouping syms,NCBI
+alc Lifetime Use Disorder Continue Drinking Blackout,Alcohol Lifetime Use Disorder Continue Drinking Blackout,replace keywords,PhenX Toolkit
+Age Broken 3,Age When Broken 3,remove stop words,PhenX Toolkit
+Actinopolyspora sp. H55,Actinopolyspora mzabensis,user rep,NCBI
+acaryochlori sp. Awaji-1,Acaryochloris sp. Awaji-1,remove suffix,NCBI
+3000HzRestest LeftEarCNO,3000HzRestest Left Ear CNO,remove punctuation,PhenX Toolkit
+4000Hz Left Ear CNO,4000Hz Left Ear CNO,standard,PhenX Toolkit
+piliforme,[Clostridium] piliforme,remove text in grouping syms,NCBI
+Have Seizure Epilepsy Or Disorder,Have Seizure Disorder Or Epilepsy,swap words around conjunctions,PhenX Toolkit
+Arthrobacter sp. bA402011,Arthrobacter sp. bA40(2011),remove grouping syms,NCBI
+alc Lifetime Use Disorder Continue Drinking Depressed,Alcohol Lifetime Use Disorder Continue Drinking Depressed,replace keywords,PhenX Toolkit
+Alcohol Lifetime Use Disorder Drinks Less Effect Comparison Consume,Alcohol Lifetime Use Disorder Drinks Less Effect Comparison Consume More,remove stop words,PhenX Toolkit
+Actinotalea sp. CF5-4,Actinotalea ferrariae CF5-4,user rep,NCBI
+acetobact sp. d6,Acetobacter sp. D6,remove suffix,NCBI
+4000Hz RightEar CNO,4000Hz Right Ear CNO,remove punctuation,PhenX Toolkit
+500Hz Left Ear CNO,500Hz Left Ear CNO,standard,PhenX Toolkit

alcohol_25_bacteria_75/ood_test.csv

@@ -0,0 +1,101 @@
+representation,harmonization_standard,variation_type,source_terminology
+Acidovorax sp. Pd-E-e-D-4(2),Acidovorax sp. Pd-E-(l)-e-D-4(2),remove unit,NCBI
+25 Or 22 MCQ,22 Or 25 MCQ,swap words around conjunctions,PhenX Toolkit
+16SrXXI,16SrXXI (Pine shoot proliferation group),remove text in grouping syms,NCBI
+Acidovorax sp. p42011,Acidovorax sp. p4(2011),remove grouping syms,NCBI
+Acinetobacter sp. indicator_B3,Acinetobacter sp. I_B3,replace keywords,NCBI
+20Week Weight Lbs,20Week Weight Before Lbs,remove stop words,PhenX Toolkit
+'Amaranthus caudatus' chlorosis phytoplasma,'Amaranthus caudatus',user rep,(Derived) Bacteria Root
+'brassica napu' plant yellow phytoplasma,'Brassica napus' plant yellows phytoplasma,remove suffix,NCBI
+'Acaciaarabica'phytoplasma,'Acacia arabica' phytoplasma,remove punctuation,NCBI
+'Alternanthera ficoidea' yellow leaf roll phytoplasma,'Alternanthera ficoidea' yellow leaf roll phytoplasma,standard,NCBI
+Pantoea sp. Pd-E-e-N-2(19),Pantoea sp. Pd-E-(s)-e-N-2(19),remove unit,NCBI
+Money For Begged,Begged For Money,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. By104Ydz-dh,Bacillus sp. By104(A)Ydz-dh,remove text in grouping syms,NCBI
+Acinetobacter sp. 10095LUH 1469,Acinetobacter sp. 10095(LUH 1469),remove grouping syms,NCBI
+Acinetobacter sp. pd-155,Acinetobacter sp. P-155,replace keywords,NCBI
+2DaysBeforeYesterday ActivityNumber 1100AM,2DaysBeforeYesterday ActivityNumber 1100AM Other,remove stop words,PhenX Toolkit
+'Cajanus scarabaeoides' leaflet phytoplasma,'Cajanus scarabaeoides',user rep,(Derived) Bacteria Root
+'cicadellida sp.' phytoplasma,'Cicadellidae sp.' phytoplasma,remove suffix,NCBI
+'Coreopsisgrandiflora','Coreopsis grandiflora',remove punctuation,(Derived) Bacteria Root
+'Cucumis sativus','Cucumis sativus',standard,(Derived) Bacteria Root
+Sphingomonas sp. Pd-S-e-D-2(2),Sphingomonas sp. Pd-S-(l)-e-D-2(2),remove unit,NCBI
+Days Training Or School,Days School Or Training,swap words around conjunctions,PhenX Toolkit
+Bittarella massiliensis,Bittarella massiliensis (ex Durand et al. 2017),remove text in grouping syms,NCBI
+Acinetobacter sp. 9282010,Acinetobacter sp. 928(2010),remove grouping syms,NCBI
+action Out Dreams HowOften Months,Act Out Dreams HowOften Months,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 330PM,2DaysBeforeYesterday ActivityNumber 330PM Other,remove stop words,PhenX Toolkit
+'Maiestas sp.' associated phytoplasma,'Maiestas sp.',user rep,(Derived) Bacteria Root
+'Elaeis guineensi' spear rot disease phytoplasma,'Elaeis guineensis' spear rot disease phytoplasma,remove suffix,NCBI
+'Euphorbia hirta'phytoplasma,'Euphorbia hirta' phytoplasma,remove punctuation,NCBI
+'Orosius albicinctus' witches'-broom phytoplasma,'Orosius albicinctus' witches'-broom phytoplasma,standard,NCBI
+Xanthomonas sp. Pd-E-l-D-7(6),Xanthomonas sp. Pd-E-(s)-l-D-7(6),remove unit,NCBI
+DietaryIntake Female Or Male,DietaryIntake Male Or Female,swap words around conjunctions,PhenX Toolkit
+Blattabacterium sp.,Blattabacterium sp. (Opisthoplatia sp.),remove text in grouping syms,NCBI
+Acinetobacter sp. S22010,Acinetobacter sp. S2(2010),remove grouping syms,NCBI
+Activity content,Activity Level,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 800AM,2DaysBeforeYesterday ActivityNumber 800AM Other,remove stop words,PhenX Toolkit
+"2,3-D degrading bacterium NHG3","2,3-D degrading bacterium",user rep,(Derived) Bacteria Root
+'Phoenix dactylifera' aster yellow phytoplasma,'Phoenix dactylifera' aster yellows phytoplasma,remove suffix,NCBI
+'Pennisetumglaucum'phytoplasma,'Pennisetum glaucum' phytoplasma,remove punctuation,NCBI
+'Picris echioides' phyllody phytoplasma,'Picris echioides' phyllody phytoplasma,standard,NCBI
+Drug Aftereffects For Medicine,Drug Medicine For Aftereffects,swap words around conjunctions,PhenX Toolkit
+Bradyrhizobium lupini HPC,Bradyrhizobium lupini HPC(L),remove text in grouping syms,NCBI
+Aeromonas sp. Ae242011,Aeromonas sp. Ae24(2011),remove grouping syms,NCBI
+AddictionSeverity alc ToIntoxication Lifetime,AddictionSeverity Alcohol ToIntoxication Lifetime,replace keywords,PhenX Toolkit
+30Day Sedatives Using Getting,30Day Sedatives Using Getting Over,remove stop words,PhenX Toolkit
+Acidaminococcus sp. Marseille-P4266,Acidaminococcus provencensis,user rep,NCBI
+'pseudophoenix sargentii' yellow phytoplasma,'Pseudophoenix sargentii' yellowing phytoplasma,remove suffix,NCBI
+'Sennasurattensis' stem fasciationphytoplasma,'Senna surattensis' stem fasciation phytoplasma,remove punctuation,NCBI
+'Spinacia oleracea' phyllody phytoplasma,'Spinacia oleracea' phyllody phytoplasma,standard,NCBI
+Mania Reduced Sleep For Need,Mania Reduced Need For Sleep,swap words around conjunctions,PhenX Toolkit
+Buchnera aphidicola,Buchnera aphidicola (Aphis nerii),remove text in grouping syms,NCBI
+Arthrobacter sp. bD112011,Arthrobacter sp. bD11(2011),remove grouping syms,NCBI
+AddictionSeverity Attempt Suicide prior Month,AddictionSeverity Attempt Suicide Past Month,replace keywords,PhenX Toolkit
+Ability Start Conversation Children,Ability Start Conversation Other Children,remove stop words,PhenX Toolkit
+Acidicaldus organivorus,Acidicaldus organivorans,user rep,NCBI
+'trema laevigata' witch'-broom phytoplasma,'Trema laevigata' witches'-broom phytoplasma,remove suffix,NCBI
+'Vignaradiata'budproliferationphytoplasma,'Vigna radiata' bud proliferation phytoplasma,remove punctuation,NCBI
+'Vigna radiata' phyllody phytoplasma,'Vigna radiata' phyllody phytoplasma,standard,NCBI
+No Cocaine For Desire,No Desire For Cocaine,swap words around conjunctions,PhenX Toolkit
+Bushehr alfalfa witches'-broom phytoplasma,Bushehr(Iran) alfalfa witches'-broom phytoplasma,remove text in grouping syms,NCBI
+Bacillaceae bacterium 1914_NPK6,Bacillaceae bacterium 1914_NPK(6),remove grouping syms,NCBI
+AddictionSeverity Martial sts,AddictionSeverity Martial Status,replace keywords,PhenX Toolkit
+Ability Get Message Across,Ability To Get Message Across,remove stop words,PhenX Toolkit
+Acinetobacter baumannii strain 113,Acinetobacter baumannii 113,user rep,NCBI
+12 Month bidi Use,12 Month Bidis Use,remove suffix,PhenX Toolkit
+12Month CrystalMethUse,12 Month Crystal Meth Use,remove punctuation,PhenX Toolkit
+12 Month Heroin Use,12 Month Heroin Use,standard,PhenX Toolkit
+Numbness Left Hand Or Arm,Numbness Left Arm Or Hand,swap words around conjunctions,PhenX Toolkit
+Candidatus Cyrtobacter sp.,Candidatus Cyrtobacter sp. (ex Euplotes eurystomus),remove text in grouping syms,NCBI
+Bacillaceae bacterium 1944_FYM2,Bacillaceae bacterium 1944_FYM(2),remove grouping syms,NCBI
+Adenoma Exact # Determined,Adenoma Exact Number Determined,replace keywords,PhenX Toolkit
+Adults Used Drugs,Adults Who Used Drugs,remove stop words,PhenX Toolkit
+Acrocarpospora sp. 322D07,Acrocarpospora sp.,user rep,(Derived) Bacteria Root
+"2,4-D degrad bacterium b6-10","2,4-D degrading bacterium B6-10",remove suffix,NCBI
+12Month LSD Use,12 Month LSD Use,remove punctuation,PhenX Toolkit
+12 Month MDMA Use,12 Month MDMA Use,standard,PhenX Toolkit
+Numbness Left Foot Or Leg,Numbness Left Leg Or Foot,swap words around conjunctions,PhenX Toolkit
+Dehalococcoides sp. enrichment culture clone KS9,Dehalococcoides sp. enrichment culture clone KS9(KSRdA04),remove text in grouping syms,NCBI
+Bacillus sp. 4S22015,Bacillus sp. 4S2(2015),remove grouping syms,NCBI
+Adenoma Non Advanced num,Adenoma Non Advanced Number,replace keywords,PhenX Toolkit
+Affordability Problems Access Prescriptions Delay Cost 3,Affordability Problems Access Prescriptions Delay Cost Who 3,remove stop words,PhenX Toolkit
+Actibacterium atlanticum,Actibacterium,user rep,(Derived) Bacteria Root
+2DaysBeforeYesterday activitynumb 1000am other,2DaysBeforeYesterday ActivityNumber 1000AM Other,remove suffix,PhenX Toolkit
+12 Month MarijuanaHashish Use,12 Month Marijuana Hashish Use,remove punctuation,PhenX Toolkit
+12 Month OxyContin Use,12 Month OxyContin Use,standard,PhenX Toolkit
+Tingling Or Numbness,Numbness Or Tingling,swap words around conjunctions,PhenX Toolkit
+Halomonas sp. 71_50.2mbsf,Halomonas sp. 71_(IO)_50.2mbsf,remove text in grouping syms,NCBI
+Bacillus sp. A192012b,Bacillus sp. A19(2012b),remove grouping syms,NCBI
+alc Cessation,Alcohol Cessation,replace keywords,PhenX Toolkit
+Stopping Difficulty Concentrating Last12Months,After Stopping Difficulty Concentrating Last12Months,remove stop words,PhenX Toolkit
+Actinobacillus cf. equuli,Actinobacillus equuli subsp. haemolyticus,user rep,NCBI
+2DaysBeforeYesterday activitynumb 100PM work List,2DaysBeforeYesterday ActivityNumber 100PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber1030AM,2DaysBeforeYesterday ActivityNumber 1030AM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1230PM Work List,2DaysBeforeYesterday ActivityNumber 1230PM Work List,standard,PhenX Toolkit
+Difficulty For Reason,Reason For Difficulty,swap words around conjunctions,PhenX Toolkit
+Lactobacillus sp. L329D02,Lactobacillus sp. L329(LBF2)D02,remove text in grouping syms,NCBI
+Bacillus sp. A72006,Bacillus sp. A7(2006),remove grouping syms,NCBI
+alc Half Increase Get Drunk,Alcohol Half Increase Get Drunk,replace keywords,PhenX Toolkit
+Aggression Pushed Blows,Aggression Pushed To Blows,remove stop words,PhenX Toolkit
+Actinomadura longicatena,Actinocorallia longicatena,user rep,NCBI

alcohol_25_bacteria_75/train.csv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:6889a31ce2f2525fecaff887cdb9227dfdd1a4286d53a4a59e4f15881a343508
+size 25349381

alcohol_25_bacteria_75/valid.csv

@@ -0,0 +1,201 @@
+representation,harmonization_standard,variation_type,source_terminology
+Aeromonas sp. M42011,Aeromonas sp. M4(2011),remove grouping syms,NCBI
+12 Month Inhaled Gas Spray Use,12 Month Inhaled Gas Or Spray Use,remove stop words,PhenX Toolkit
+80 Or 78 MCQ,78 Or 80 MCQ,swap words around conjunctions,PhenX Toolkit
+Arthrobacter sp. 282011,Arthrobacter sp. 28(2011),remove grouping syms,NCBI
+2DaysBeforeYesterday ExertionLevel 800PM,2DaysBeforeYesterday ExertionLevel 800PM,standard,PhenX Toolkit
+Administrative Assistant Relationship Specify,Administrative Assistant Relationship Other Specify,remove stop words,PhenX Toolkit
+AddictionSeverity SeriousProblems Mother prior Month,AddictionSeverity SeriousProblems Mother Past Month,replace keywords,PhenX Toolkit
+Actinomyces sp. ChDC B650,Actinomyces sp. ChDC,user rep,(Derived) Bacteria Root
+Contraindication For Reason,Reason For Contraindication,swap words around conjunctions,PhenX Toolkit
+'podocarpu nagi' fasciation phytoplasma,'Podocarpus nagi' fasciation phytoplasma,remove suffix,NCBI
+Conned Money For People,Conned People For Money,swap words around conjunctions,PhenX Toolkit
+500Hz Left Ear CNO,500Hz Left Ear CNO,standard,PhenX Toolkit
+OtherDrugs Need Effect For More,OtherDrugs Need More For Effect,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Spent On alc,AddictionSeverity Spent On Alcohol,replace keywords,PhenX Toolkit
+alc Lifetime Use Disorder Continue Drinking Depressed Past Year,Alcohol Lifetime Use Disorder Continue Drinking Depressed Past Year,replace keywords,PhenX Toolkit
+alc Lifetime Use Disorder Continue Drinking Depressed,Alcohol Lifetime Use Disorder Continue Drinking Depressed,replace keywords,PhenX Toolkit
+'Santalum album' phytoplasma,'Santalum album' phytoplasma,standard,NCBI
+Excellospora viridilutea,Actinomadura viridilutea,user rep,NCBI
+2DaysBeforeYesterday ActivityNumber1030PM,2DaysBeforeYesterday ActivityNumber 1030PM,remove punctuation,PhenX Toolkit
+Aeromonas sp. D22011,Aeromonas sp. D2(2011),remove grouping syms,NCBI
+Marijuana High Feel Down,After Marijuana High Feel Down,remove stop words,PhenX Toolkit
+'Citrus sinensis' phytoplasma,'Citrus sinensis',user rep,(Derived) Bacteria Root
+Wolbachia endosymbiont of Parapoynx stratiotata,Wolbachia endosymbiont (group B) of Parapoynx stratiotata,remove text in grouping syms,NCBI
+EatingScale Child Drink For AlwaysAsking,EatingScale Child AlwaysAsking For Drink,swap words around conjunctions,PhenX Toolkit
+'Zinnia elegans' phyllody phytoplasma,'Zinnia elegans' phyllody phytoplasma,standard,NCBI
+AddictionSeverity Martial sts Length,AddictionSeverity Martial Status Length,replace keywords,PhenX Toolkit
+Do Almost Cigarette For Anything,Do Almost Anything For Cigarette,swap words around conjunctions,PhenX Toolkit
+Lactobacillus sp. L319C02,Lactobacillus sp. L319(LBF2)C02,remove text in grouping syms,NCBI
+Actinobacillus minor str. NM305,Actinobacillus minor NM305,user rep,NCBI
+alc Lifetime Use Disorder Consume Much More,Alcohol Lifetime Use Disorder Consume Much More,replace keywords,PhenX Toolkit
+'Chenopodium album' yellowing phytoplasma,'Chenopodium album' yellowing phytoplasma,standard,NCBI
+'Citrusdepressa' phytoplasma,'Citrus depressa' phytoplasma,remove punctuation,NCBI
+'Sabalpalmetto' phytoplasma,'Sabal palmetto' phytoplasma,remove punctuation,NCBI
+Consider All Disadvantages And Advantages,Consider All Advantages And Disadvantages,swap words around conjunctions,PhenX Toolkit
+alc Lifetime Use Disorder Consume Twenty Drinks,Alcohol Lifetime Use Disorder Consume Twenty Drinks,replace keywords,PhenX Toolkit
+Aeromonas sp. s72024,Aeromonas sp. s7(2024),remove grouping syms,NCBI
+30 day sed Use,30 Day Sedative Use,remove suffix,PhenX Toolkit
+30 Day Crystal Meth Use,30 Day Crystal Meth Use,standard,PhenX Toolkit
+30Day Frequency Estimate Coded,30Day Frequency Estimate Coded,standard,PhenX Toolkit
+Lactococcus sp. SI-Km-1B,Lactococcus sp. SI-Km(R)-1B,remove text in grouping syms,NCBI
+Able Control Irritations,Able To Control Irritations,remove stop words,PhenX Toolkit
+Actinotalea sp. CF5-4,Actinotalea ferrariae CF5-4,user rep,NCBI
+'Hishimonus phycitis' phytoplasma IARI,'Hishimonus phycitis' phytoplasma IARI,standard,NCBI
+Acinetobacter sp. paid-112,Acinetobacter sp. P-112,replace keywords,NCBI
+Agrobacterium sp. 16WI+_OTU30,Agrobacterium sp. 16WI(+)_OTU30,remove grouping syms,NCBI
+alc Lifetime Use Disorder Continue Drinking Health,Alcohol Lifetime Use Disorder Continue Drinking Health,replace keywords,PhenX Toolkit
+'Dimocarpus longan' witches'-broom phytoplasma,'Dimocarpus longan' witches'-broom phytoplasma,standard,NCBI
+'Cleome rutidosperma' witches'-broom phytoplasma,'Cleome rutidosperma' witches'-broom phytoplasma,standard,NCBI
+Actinomadura mexicana Quintana et al. 2004,Actinomadura mexicana,user rep,NCBI
+Aeromonas sp. H102011,Aeromonas sp. H10(2011),remove grouping syms,NCBI
+alc Drugs Caused Reduced Involvement,Alcohol Drugs Caused Reduced Involvement,replace keywords,PhenX Toolkit
+4000Hz Right Ear CNO,4000Hz Right Ear CNO,standard,PhenX Toolkit
+Viola tricolor yellows little leaf phytoplasma,'Viola tricolor' yellows and little leaf phytoplasma,remove stop words,NCBI
+30 Day quaalud Use,30 Day Quaalude Use,remove suffix,PhenX Toolkit
+30 Day amphetamin Use,30 Day Amphetamines Use,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber1000AM,2DaysBeforeYesterday ActivityNumber 1000AM,remove punctuation,PhenX Toolkit
+Alkalimonas sp. H22011,Alkalimonas sp. H2(2011),remove grouping syms,NCBI
+Acinetobacter sp. ANC 4900,Acinetobacter sp. A47,user rep,NCBI
+4000Hz LeftEar CNO,4000Hz Left Ear CNO,remove punctuation,PhenX Toolkit
+Age First Time und 18,Age First Time Under 18,replace keywords,PhenX Toolkit
+Age Broken 3,Age When Broken 3,remove stop words,PhenX Toolkit
+Able Stop Using Drugs,Able To Stop Using Drugs,remove stop words,PhenX Toolkit
+Bacillus sp. 239-3.1-LH-Heh-06,Bacillus sp. 239-3.1-LH-Heh(h)-06,remove text in grouping syms,NCBI
+16SrXXXVI,16SrXXXVI (Foxtail palm yellow decline group),remove text in grouping syms,NCBI
+Acetobacter pomorum DM001,Acetobacter pomorum,user rep,(Derived) Bacteria Root
+2DaysBeforeYesterday ExertionLevel 300PM,2DaysBeforeYesterday ExertionLevel 300PM,standard,PhenX Toolkit
+AddictionSeverity alc ToIntoxication PastMonth,AddictionSeverity Alcohol ToIntoxication PastMonth,replace keywords,PhenX Toolkit
+abil Understand Spoken Directions,Ability Understand Spoken Directions,remove suffix,PhenX Toolkit
+2daysbeforeyesterday activitynumb 1130PM,2DaysBeforeYesterday ActivityNumber 1130PM,remove suffix,PhenX Toolkit
+30Day Crack Use,30 Day Crack Use,remove punctuation,PhenX Toolkit
+AddictionSeverity Drug Problems prior Month,AddictionSeverity Drug Problems Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel730PM,2DaysBeforeYesterday ExertionLevel 730PM,remove punctuation,PhenX Toolkit
+30day frequenc Count,30Day Frequency Count,remove suffix,PhenX Toolkit
+Aeromonas sp. Ae22011,Aeromonas sp. Ae2(2011),remove grouping syms,NCBI
+2DaysBeforeYesterdayExertionLevel 230PM,2DaysBeforeYesterday ExertionLevel 230PM,remove punctuation,PhenX Toolkit
+Afipia sp. PVC0.1X,Afipia sp. PVC(0.1)X,remove grouping syms,NCBI
+'Phoenix canariensis' phytoplasma,'Phoenix canariensis' lethal yellowing phytoplasma,user rep,NCBI
+Wolbachia endosymbiont of Eristalinus aeneus,Wolbachia endosymbiont (group A) of Eristalinus aeneus,remove text in grouping syms,NCBI
+2DaysBeforeYesterdayActivityNumber 800PMWork List,2DaysBeforeYesterday ActivityNumber 800PM Work List,remove punctuation,PhenX Toolkit
+Have Seizure Epilepsy Or Disorder,Have Seizure Disorder Or Epilepsy,swap words around conjunctions,PhenX Toolkit
+16SrVII,16SrVII (Ash yellows group),remove text in grouping syms,NCBI
+Aeromonas sp. F102011,Aeromonas sp. F10(2011),remove grouping syms,NCBI
+'Macrotyloma uniflorum'phytoplasma,'Macrotyloma uniflorum' phytoplasma,remove punctuation,NCBI
+Agoraphobia Help,Agoraphobia No Help,remove stop words,PhenX Toolkit
+6000Hz Threshold Left Ear,6000Hz Threshold Left Ear,standard,PhenX Toolkit
+Microbacterium sp. G2W6,Microbacterium sp. G2W6(B),remove text in grouping syms,NCBI
+Actinomyces graevenitzii str. C83,Actinomyces graevenitzii C83,user rep,NCBI
+'Empoasca faba' phytoplasma,'Empoasca fabae' phytoplasma,remove suffix,NCBI
+500Hz Threshold RightEar,500Hz Threshold Right Ear,remove punctuation,PhenX Toolkit
+30 Day Cocaine Use,30 Day Other Cocaine Use,remove stop words,PhenX Toolkit
+Arthrobacter sp. enrichment culture clone 9.1,Arthrobacter sp. enrichment culture clone (ENR1)9.1,remove text in grouping syms,NCBI
+Alcohol Lifetime Use Disorder Consume Much More prior Year,Alcohol Lifetime Use Disorder Consume Much More Past Year,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 900PM,2DaysBeforeYesterday ActivityNumber 900PM,standard,PhenX Toolkit
+Acinetobacter sp. paid-121,Acinetobacter sp. P-121,replace keywords,NCBI
+80 Or 33 MCQ,33 Or 80 MCQ,swap words around conjunctions,PhenX Toolkit
+Azospirillum sp. HY92010,Azospirillum sp. HY9(2010),remove grouping syms,NCBI
+alc Lifetime Use Disorder Consume Twenty Drinks Prior Last Year,Alcohol Lifetime Use Disorder Consume Twenty Drinks Prior Last Year,replace keywords,PhenX Toolkit
+'Bituminaria bituminosa' witches'-broom phytoplasma,'Bituminaria bituminosa',user rep,(Derived) Bacteria Root
+'corylu avellana' phytoplasma D1469/18,'Corylus avellana' phytoplasma D1469/18,remove suffix,NCBI
+Hip Fracture Report OR Confirmation,Hip Fracture Confirmation OR Report,swap words around conjunctions,PhenX Toolkit
+30 Days Ecig Flavor i,30 Days Ecig Flavor Indicator,replace keywords,PhenX Toolkit
+Actinomycetales bacterium B142010,Actinomycetales bacterium B14(2010),remove grouping syms,NCBI
+Age Gallbladder Surgery 75,Age At Gallbladder Surgery 75+,remove stop words,PhenX Toolkit
+30 DayMarijuana HashishUse,30 Day Marijuana Hashish Use,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel 130PM,2DaysBeforeYesterday ExertionLevel 130PM,remove punctuation,PhenX Toolkit
+30 Day smokeless tobacco frequenc,30 Day Smokeless Tobacco Frequency,remove suffix,PhenX Toolkit
+Streptomyces sp. 229-4.1-LH-H14-02,Streptomyces sp. 229-4.1-LH-H14(s)-02,remove unit,NCBI
+Acidithiobacillales bacterium SM1_46,Acidithiobacillales bacterium,user rep,(Derived) Bacteria Root
+Phytoplasma sp. LfY4-Oaxaca,Phytoplasma sp. LfY4(MA3)-Oaxaca,remove text in grouping syms,NCBI
+30 Day Steroid Use,30 Day Steroid Use,standard,PhenX Toolkit
+Wolbachia endosymbiont of Hydraena sp,Wolbachia endosymbiont of Hydraena (Hydraenopsis) sp.,remove text in grouping syms,NCBI
+Bacillus sp. 027-2.2-LH-H16-04,Bacillus sp. 027-2.2-LH-H16(s)-04,remove unit,NCBI
+abil Use word correctli,Ability Use Words Correctly,remove suffix,PhenX Toolkit
+30 day tranquil Use,30 Day Tranquilizer Use,remove suffix,PhenX Toolkit
+30Day Stimulants Using Getting,30Day Stimulants Using Getting Over,remove stop words,PhenX Toolkit
+alc First Use Age Coded,Alcohol First Use Age Coded,replace keywords,PhenX Toolkit
+'Spartiumjunceum' phytoplasmaSI04-S4,'Spartium junceum' phytoplasma SI04-S4,remove punctuation,NCBI
+Acidimicrobiia bacterium UBA6912,Acidimicrobiia bacterium,user rep,(Derived) Bacteria Root
+30DayFrequency Estimate,30Day Frequency Estimate,remove punctuation,PhenX Toolkit
+'Crotalariajunciea' asteryellows phytoplasma,'Crotalaria junciea' aster yellows phytoplasma,remove punctuation,NCBI
+Buchnera aphidicola str. JF99,Buchnera aphidicola str. JF99 (Acyrthosiphon pisum),remove text in grouping syms,NCBI
+2daysbeforeyesterday activitynumb 930am work list,2DaysBeforeYesterday ActivityNumber 930AM Work List,remove suffix,PhenX Toolkit
+3000HzRestest Left Ear CNO,3000HzRestest Left Ear CNO,standard,PhenX Toolkit
+Marijuana Disappointed And Depressed,Marijuana Depressed And Disappointed,swap words around conjunctions,PhenX Toolkit
+12 Month Cocaine Use,12 Month Other Cocaine Use,remove stop words,PhenX Toolkit
+Acinetobacter sp. A342011,Acinetobacter sp. A34(2011),remove grouping syms,NCBI
+nexile,[Clostridium] nexile,remove text in grouping syms,"NCBI, (Derived) Bacteria Root"
+MaleRespondent OneWoman Casual Or Main,MaleRespondent OneWoman Main Or Casual,swap words around conjunctions,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 1030am Other,2DaysBeforeYesterday ActivityNumber 1030AM Other,remove suffix,PhenX Toolkit
+FEF75 Or Blank3,Blank3 Or FEF75,swap words around conjunctions,PhenX Toolkit
+alc Lifetime Use Disorder Continue Drinking Blackout,Alcohol Lifetime Use Disorder Continue Drinking Blackout,replace keywords,PhenX Toolkit
+'Psammotettix alienus' phytoplasma,'Psammotettix alienus' phytoplasma,standard,NCBI
+Nostoc sp. 'Peltigera dolichorhiza ) cyanobiont',Nostoc sp. 'Peltigera dolichorhiza (MagainSerusiaux1109_DNA2289(LG)) cyanobiont',remove text in grouping syms,NCBI
+3000Hz LeftEarCNO,3000Hz Left Ear CNO,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1230PM,2DaysBeforeYesterday ActivityNumber 1230PM Other,remove stop words,PhenX Toolkit
+Making Marijuana For Plans,Making Plans For Marijuana,swap words around conjunctions,PhenX Toolkit
+16SrXVI Sugar Cane yellow leaf syndrome group,16SrXVI (Sugar Cane yellow leaf syndrome group),remove grouping syms,NCBI
+Alcanivorax sp. MARC2C-pd,Alcanivorax sp. MARC2C-P,replace keywords,NCBI
+Acidiphilum rubrum,Acidiphilium rubrum,user rep,NCBI
+Stopping Depressed Last12Months,After Stopping Depressed Last12Months,remove stop words,PhenX Toolkit
+Ability Say sentenc Clearly,Ability Say Sentences Clearly,remove suffix,PhenX Toolkit
+Aggression Reason ToHIt,Aggression No Reason ToHIt,remove stop words,PhenX Toolkit
+Arthrobacter sp. bA402011,Arthrobacter sp. bA40(2011),remove grouping syms,NCBI
+Candidatus Ichthyocystis sp.,Candidatus Ichthyocystis sp. (ex Trachinotus ovatus),remove text in grouping syms,NCBI
+Acinetobacter gerneri MTCC 9824,Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824,user rep,NCBI
+2DaysBeforeYesterday ActivityNumber 1000PM,2DaysBeforeYesterday ActivityNumber 1000PM Other,remove stop words,PhenX Toolkit
+'Ageratum conyzoid' phytoplasma,'Ageratum conyzoide' phytoplasma,remove suffix,NCBI
+2DaysBeforeYesterday ExertionLevel 200PM,2DaysBeforeYesterday ExertionLevel 200PM,standard,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 1200PM,2DaysBeforeYesterday ActivityNumber 1200PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1100PM,2DaysBeforeYesterday ActivityNumber 1100PM,standard,PhenX Toolkit
+Arthrobacter sp. L102010,Arthrobacter sp. L10(2010),remove grouping syms,NCBI
+4000Hz ThresholdRightEar,4000Hz Threshold Right Ear,remove punctuation,PhenX Toolkit
+Acinetobacter sp. B301,Acinetobacter portensis,user rep,NCBI
+'Amaranthchlorisis'phytoplasma,'Amaranth chlorisis' phytoplasma,remove punctuation,NCBI
+Acinetobacter sp. 502010,Acinetobacter sp. 50(2010),remove grouping syms,NCBI
+Aeromonas sp. B12011,Aeromonas sp. B1(2011),remove grouping syms,NCBI
+abil keep convers Going,Ability Keep Conversation Going,remove suffix,PhenX Toolkit
+Agrobacterium sp. JK42011,Agrobacterium sp. JK4(2011),remove grouping syms,NCBI
+'Cinnamomum camphora' witch'-broom phytoplasma,'Cinnamomum camphora' witches'-broom phytoplasma,remove suffix,NCBI
+"2,4-d-degrad bacterium tfd13","2,4-D-degrading bacterium TFD13",remove suffix,NCBI
+sp. KITNT-3,[Bacillus] sp. KITNT-3,remove text in grouping syms,NCBI
+Actinobacillus pleuropneumoniae serovar 7,Actinobacillus pleuropneumoniae serovar,user rep,(Derived) Bacteria Root
+Arthrobacter sp. 3-552012,Arthrobacter sp. 3-55(2012),remove grouping syms,NCBI
+Reason Not HIV For Tested,Reason Not Tested For HIV,swap words around conjunctions,PhenX Toolkit
+'Taxillus chinensi' phytoplasma,'Taxillus chinensis' phytoplasma,remove suffix,NCBI
+'Sesamum indicum' phyllodi phytoplasma GKVK,'Sesamum indicum' phyllody phytoplasma GKVK,remove suffix,NCBI
+Streptomyces caeruleus (Baldacci 1944) Pridham et al. 1958 (Approved Lists 1980),Actinoalloteichus caeruleus,user rep,NCBI
+Aeromonas sp. Ae712011,Aeromonas sp. Ae71(2011),remove grouping syms,NCBI
+Alcohol Lifetime Use Disorder Drink Longer Intended Past Year,Alcohol Lifetime Use Disorder Drink Longer Than Intended Past Year,remove stop words,PhenX Toolkit
+Dehalococcoides sp. enrichment culture clone KS24,Dehalococcoides sp. enrichment culture clone KS24(KSRdA09),remove text in grouping syms,NCBI
+Child Care Quality Younger Anyone Baby For Caring,Child Care Quality Younger Anyone Caring For Baby,swap words around conjunctions,PhenX Toolkit
+Able Drink Stimulants,Able To Drink More Stimulants,remove stop words,PhenX Toolkit
+80 Or 54 MCQ,54 Or 80 MCQ,swap words around conjunctions,PhenX Toolkit
+Cocaine Need Effect For More,Cocaine Need More For Effect,swap words around conjunctions,PhenX Toolkit
+Age Than Breast Milk,Age Other Than Breast Milk,remove stop words,PhenX Toolkit
+Rely On Help For Friends,Rely On Friends For Help,swap words around conjunctions,PhenX Toolkit
+Facts Or Imagination,Imagination Or Facts,swap words around conjunctions,PhenX Toolkit
+'Heterothalamus alienus'phytoplasma,'Heterothalamus alienus' phytoplasma,remove punctuation,NCBI
+Wolbachia endosymbiont of Eurema hecabe,Wolbachia endosymbiont of Eurema hecabe (Okinawa 1),remove text in grouping syms,NCBI
+piliforme,[Clostridium] piliforme,remove text in grouping syms,NCBI
+25 Or 19 MCQ,19 Or 25 MCQ,swap words around conjunctions,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 300PM,2DaysBeforeYesterday ActivityNumber 300PM Other,remove stop words,PhenX Toolkit
+Alteromonas sp. N982010,Alteromonas sp. N98(2010),remove grouping syms,NCBI
+Wolbachia endosymbiont of Coremacera marginata,Wolbachia endosymbiont (group A) of Coremacera marginata,remove text in grouping syms,NCBI
+Age Onset,Age Of Onset,remove stop words,PhenX Toolkit
+Parabacteroides distasonis str. 3999B T,Parabacteroides distasonis str. 3999B T(B),remove text in grouping syms,(Derived) Bacteria Root
+2DaysBeforeYesterday activitynumb 730am Work list,2DaysBeforeYesterday ActivityNumber 730AM Work List,remove suffix,PhenX Toolkit
+Actinoalloteichus cyanogriseus DSM 43889,Actinoalloteichus caeruleus DSM 43889,user rep,NCBI
+AddictionSeverity TroubleUnderstanding prior Month,AddictionSeverity TroubleUnderstanding Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 100PM,2DaysBeforeYesterday ActivityNumber 100PM,standard,PhenX Toolkit
+Streptomyces sp. 196-3.2-CV-H26-06,Streptomyces sp. 196-3.2-CV-H26(h)-06,remove text in grouping syms,NCBI
+6000HzRestestThreshold Right Ear,6000HzRestest Threshold Right Ear,remove punctuation,PhenX Toolkit
+Xanthomonas sp. Pd-E-l-D-9(20),Xanthomonas sp. Pd-E-(s)-l-D-9(20),remove unit,NCBI
+Actinoplanes sp. ATCC55532,Actinoplanes sp. ATCC 55532,user rep,NCBI
+Acidovorax sp. D2M1,Acidovorax benzenivorans,user rep,NCBI
+Activities Community Scouting,Activities In Community Scouting,remove stop words,PhenX Toolkit
+Acinetobacter sp. pd-107,Acinetobacter sp. P-107,replace keywords,NCBI
+2DaysBeforeYesterday ActivityNumber 200PM Work List,2DaysBeforeYesterday ActivityNumber 200PM Work List,standard,PhenX Toolkit
+Actinomyces timonensis DSM 23838,Actinomyces timonensis,user rep,(Derived) Bacteria Root
+First Go And Up,First Up And Go,swap words around conjunctions,PhenX Toolkit

alcohol_50_bacteria_50/id_test.csv

@@ -0,0 +1,101 @@
+representation,harmonization_standard,variation_type,source_terminology
+Streptomyces sp. 229-4.1-LH-H14-02,Streptomyces sp. 229-4.1-LH-H14(s)-02,remove unit,NCBI
+16SrXXI,16SrXXI (Pine shoot proliferation group),remove text in grouping syms,NCBI
+25 Or 14 MCQ,14 Or 25 MCQ,swap words around conjunctions,PhenX Toolkit
+16SrXXXVI Foxtail palm yellow decline group,16SrXXXVI (Foxtail palm yellow decline group),remove grouping syms,NCBI
+'Prunus salicina' phytoplasma PLKr1,'Prunus salicina' phytoplasma,user rep,(Derived) Bacteria Root
+Acinetobacter sp. paid-155,Acinetobacter sp. P-155,replace keywords,NCBI
+20 Drinks One Day,20 Drinks In One Day,remove stop words,PhenX Toolkit
+'cicadellida sp.' phytoplasma,'Cicadellidae sp.' phytoplasma,remove suffix,NCBI
+'Alternanthera ficoidea' yellow leafroll phytoplasma,'Alternanthera ficoidea' yellow leaf roll phytoplasma,remove punctuation,NCBI
+'Carpoxylon macrospermum' phytoplasma,'Carpoxylon macrospermum' phytoplasma,standard,NCBI
+Arthrobacter sp. 167-4.2-CV-H26-02,Arthrobacter sp. 167-4.2-CV-H26(h)-02,remove text in grouping syms,NCBI
+50 Or 27 MCQ,27 Or 50 MCQ,swap words around conjunctions,PhenX Toolkit
+Acidovorax sp. p42011,Acidovorax sp. p4(2011),remove grouping syms,NCBI
+Acidovorax sp. NCPPB 3576,Acidovorax sp. NCPPB,user rep,(Derived) Bacteria Root
+action Without Thinking Make Worse,Act Without Thinking Make Worse,replace keywords,PhenX Toolkit
+20Week Weight Lbs,20Week Weight Before Lbs,remove stop words,PhenX Toolkit
+'Trema laevigata' witch'-broom phytoplasma,'Trema laevigata' witches'-broom phytoplasma,remove suffix,NCBI
+'Spartium junceum'phytoplasma SI04-S4,'Spartium junceum' phytoplasma SI04-S4,remove punctuation,NCBI
+'Vigna radiata' bud proliferation phytoplasma,'Vigna radiata' bud proliferation phytoplasma,standard,NCBI
+Dehalococcoides sp. enrichment culture clone KS9,Dehalococcoides sp. enrichment culture clone KS9(KSRdA04),remove text in grouping syms,NCBI
+80 Or 33 MCQ,33 Or 80 MCQ,swap words around conjunctions,PhenX Toolkit
+Acinetobacter sp. 502010,Acinetobacter sp. 50(2010),remove grouping syms,NCBI
+Acinetobacter pullorum,Acinetobacter portensis,user rep,NCBI
+AddictionSeverity Physical Abuse prior Month,AddictionSeverity Physical Abuse Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1100AM,2DaysBeforeYesterday ActivityNumber 1100AM Other,remove stop words,PhenX Toolkit
+12 month amphetamin Use,12 Month Amphetamines Use,remove suffix,PhenX Toolkit
+12 MonthAndro Use,12 Month Andro Use,remove punctuation,PhenX Toolkit
+12 Month Marijuana Hashish Use,12 Month Marijuana Hashish Use,standard,PhenX Toolkit
+Lactococcus sp. SI-Km-1B,Lactococcus sp. SI-Km(R)-1B,remove text in grouping syms,NCBI
+50 Or 47 MCQ,47 Or 50 MCQ,swap words around conjunctions,PhenX Toolkit
+Aeromonas sp. H102011,Aeromonas sp. H10(2011),remove grouping syms,NCBI
+Actinomadura sp. OS3-83,Actinomadura terrae,user rep,NCBI
+AddictionSeverity Sexual Abuse prior Month,AddictionSeverity Sexual Abuse Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 800PM,2DaysBeforeYesterday ActivityNumber 800PM Other,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 100PM,2DaysBeforeYesterday ActivityNumber 100PM,remove suffix,PhenX Toolkit
+12MonthRohypnol Use,12 Month Rohypnol Use,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1100PM,2DaysBeforeYesterday ActivityNumber 1100PM,standard,PhenX Toolkit
+Wolbachia endosymbiont of Alloplasta piceator,Wolbachia endosymbiont (group A) of Alloplasta piceator,remove text in grouping syms,NCBI
+80 Or 78 MCQ,78 Or 80 MCQ,swap words around conjunctions,PhenX Toolkit
+Aeromonas sp. s72024,Aeromonas sp. s7(2024),remove grouping syms,NCBI
+Actinopolyspora sp. H55,Actinopolyspora mzabensis,user rep,NCBI
+AddictionSeverity Spent On alc,AddictionSeverity Spent On Alcohol,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 900AM,2DaysBeforeYesterday ActivityNumber 900AM Other,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 1130pm,2DaysBeforeYesterday ActivityNumber 1130PM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 1200PM,2DaysBeforeYesterday ActivityNumber 1200PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 230PM,2DaysBeforeYesterday ActivityNumber 230PM,standard,PhenX Toolkit
+felis,[Haemophilus] felis,remove text in grouping syms,NCBI
+Adults Gotten High Or Drunk,Adults Gotten Drunk Or High,swap words around conjunctions,PhenX Toolkit
+Arthrobacter sp. 3-552012,Arthrobacter sp. 3-55(2012),remove grouping syms,NCBI
+candidate division CD12 bacterium JGI 0000014-C22,Aerophobetes bacterium JGI 0000014-C22,user rep,NCBI
+Adenoma Exact numb Determined,Adenoma Exact Number Determined,replace keywords,PhenX Toolkit
+Ability Get Message Across,Ability To Get Message Across,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 300pm other,2DaysBeforeYesterday ActivityNumber 300PM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 330PM,2DaysBeforeYesterday ActivityNumber 330PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 330PM Work List,2DaysBeforeYesterday ActivityNumber 330PM Work List,standard,PhenX Toolkit
+torques L2-14,[Ruminococcus] torques L2-14,remove text in grouping syms,NCBI
+FEF90 Or Blank4,Blank4 Or FEF90,swap words around conjunctions,PhenX Toolkit
+Arthrobacter sp. bA402011,Arthrobacter sp. bA40(2011),remove grouping syms,NCBI
+Oligotropha carboxidovorans DSM 1227,Afipia carboxidovorans OM5,user rep,NCBI
+Adenoma Size desc 5,Adenoma Size Description 5,replace keywords,PhenX Toolkit
+Ability Understand Others Say,Ability Understand What Others Say,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 630pm,2DaysBeforeYesterday ActivityNumber 630PM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 800PMWork List,2DaysBeforeYesterday ActivityNumber 800PM Work List,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 830AM Work List,2DaysBeforeYesterday ActivityNumber 830AM Work List,standard,PhenX Toolkit
+endosymbiont of Exorista sorbillans,endosymbiont of Exorista sorbillans (Channapatna pop.),remove text in grouping syms,NCBI
+Cancer Of Rectum Or Colon,Cancer Of Colon Or Rectum,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. 1b-9 6,Bacillus sp. 1b-9 (6),remove grouping syms,NCBI
+Corynebacterium sp. ATCC 21698,Alcaligenes viscolactis S-2,user rep,NCBI
+alc 3 Months Before Pregnancy,Alcohol 3 Months Before Pregnancy,replace keywords,PhenX Toolkit
+Activities Community Scouting,Activities In Community Scouting,remove stop words,PhenX Toolkit
+30 day Smokeless Tobacco frequenc,30 Day Smokeless Tobacco Frequency,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel1100PM,2DaysBeforeYesterday ExertionLevel 1100PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 230PM,2DaysBeforeYesterday ExertionLevel 230PM,standard,PhenX Toolkit
+Consider All Disadvantages And Advantages,Consider All Advantages And Disadvantages,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. 4S22015,Bacillus sp. 4S2(2015),remove grouping syms,NCBI
+Arcobacter butzleri str. JV22,Aliarcobacter butzleri JV22,user rep,NCBI
+alc 30Day Frequency,Alcohol 30Day Frequency,replace keywords,PhenX Toolkit
+Acute Bleeding Take Factor Prescribed,Acute Bleeding Take More Factor Than Prescribed,remove stop words,PhenX Toolkit
+30day frequenc estim code,30Day Frequency Estimate Coded,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel 430PM,2DaysBeforeYesterday ExertionLevel 430PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 730PM,2DaysBeforeYesterday ExertionLevel 730PM,standard,PhenX Toolkit
+DietaryIntake Female Or Male,DietaryIntake Male Or Female,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. 562012,Bacillus sp. 56(2012),remove grouping syms,NCBI
+Alicyclobacillus kakegawensis NBRC 103104,Alicyclobacillus kakegawensis,user rep,(Derived) Bacteria Root
+alc Continue Use Worse Problems,Alcohol Continue Use Worse Problems,replace keywords,PhenX Toolkit
+Adherence Medication Often Skip Dose Medicine Doctor,Adherence Medication Often Skip Dose Medicine Before Doctor,remove stop words,PhenX Toolkit
+30Day quantiti,30Day Quantity,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel800PM,2DaysBeforeYesterday ExertionLevel 800PM,remove punctuation,PhenX Toolkit
+30 Day Marijuana Hashish Use,30 Day Marijuana Hashish Use,standard,PhenX Toolkit
+EatingScale Child Drink For AlwaysAsking,EatingScale Child AlwaysAsking For Drink,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. 572010,Bacillus sp. 57(2010),remove grouping syms,NCBI
+Alicyclobacillus sp. 5A239-2O-A,Alicyclobacillus macrosporangiidus,user rep,NCBI
+alc First Use Age Coded,Alcohol First Use Age Coded,replace keywords,PhenX Toolkit
+Administrative Assistant Race Ethnicity Specify,Administrative Assistant Race Ethnicity Other Specify,remove stop words,PhenX Toolkit
+30Day quantiti Coded,30Day Quantity Coded,remove suffix,PhenX Toolkit
+3000HzLeft EarCNO,3000Hz Left Ear CNO,remove punctuation,PhenX Toolkit
+3000Hz Right Ear CNO,3000Hz Right Ear CNO,standard,PhenX Toolkit
+Ever GoneTo Headaches For Hospital,Ever GoneTo Hospital For Headaches,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. A192012b,Bacillus sp. A19(2012b),remove grouping syms,NCBI
+Aliinostoc sp. CENA513,Aliinostoc alkaliphilum CENA513,user rep,NCBI

alcohol_50_bacteria_50/ood_test.csv

@@ -0,0 +1,101 @@
+representation,harmonization_standard,variation_type,source_terminology
+Acidovorax sp. Pd-E-e-D-4(2),Acidovorax sp. Pd-E-(l)-e-D-4(2),remove unit,NCBI
+16SrVII,16SrVII (Ash yellows group),remove text in grouping syms,NCBI
+25 Or 19 MCQ,19 Or 25 MCQ,swap words around conjunctions,PhenX Toolkit
+Acinetobacter sp. 4-142010,Acinetobacter sp. 4-14(2010),remove grouping syms,NCBI
+'Crossandra infundibuliformis' phytoplasma,'Crossandra infundibuliformis',user rep,(Derived) Bacteria Root
+Acinetobacter sp. pd-112,Acinetobacter sp. P-112,replace keywords,NCBI
+12 Month Cocaine Use,12 Month Other Cocaine Use,remove stop words,PhenX Toolkit
+'cucumi sativus' phyllody phytoplasma yazd,'Cucumis sativus' phyllody phytoplasma Yazd,remove suffix,NCBI
+'Dimocarpus longan'witches'-broom phytoplasma,'Dimocarpus longan' witches'-broom phytoplasma,remove punctuation,NCBI
+'Elaeis guineensis' spear rot disease phytoplasma,'Elaeis guineensis' spear rot disease phytoplasma,standard,NCBI
+Bacillus sp. 027-2.2-LH-H16-04,Bacillus sp. 027-2.2-LH-H16(s)-04,remove unit,NCBI
+Arthrobacter sp. enrichment culture clone 9.1,Arthrobacter sp. enrichment culture clone (ENR1)9.1,remove text in grouping syms,NCBI
+25 Or 22 MCQ,22 Or 25 MCQ,swap words around conjunctions,PhenX Toolkit
+Actinomycetales bacterium B142010,Actinomycetales bacterium B14(2010),remove grouping syms,NCBI
+Gram-negative heterotrophic acidophile Y008,Acidicaldus organivorans,user rep,NCBI
+action Out Dreams HowOften Weeks,Act Out Dreams HowOften Weeks,replace keywords,PhenX Toolkit
+28 30 MCQ,28 Or 30 MCQ,remove stop words,PhenX Toolkit
+'Hishimonus phyciti' phytoplasma iari,'Hishimonus phycitis' phytoplasma IARI,remove suffix,NCBI
+'Macrotyloma uniflorum'phytoplasma,'Macrotyloma uniflorum' phytoplasma,remove punctuation,NCBI
+'Opuntia ficus-indica' phytoplasma,'Opuntia ficus-indica' phytoplasma,standard,NCBI
+Pantoea sp. Pd-E-e-N-2(19),Pantoea sp. Pd-E-(s)-e-N-2(19),remove unit,NCBI
+Bacillus sp. By104Ydz-dh,Bacillus sp. By104(A)Ydz-dh,remove text in grouping syms,NCBI
+35 Or 34 MCQ,34 Or 35 MCQ,swap words around conjunctions,PhenX Toolkit
+Aeromonas sp. Ae242011,Aeromonas sp. Ae24(2011),remove grouping syms,NCBI
+Acidovorax sp. D2M1,Acidovorax benzenivorans,user rep,NCBI
+action Without Thinking When Upset,Act Without Thinking When Upset,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1000PM,2DaysBeforeYesterday ActivityNumber 1000PM Other,remove stop words,PhenX Toolkit
+'Orosius albicinctu' witch'-broom phytoplasma,'Orosius albicinctus' witches'-broom phytoplasma,remove suffix,NCBI
+'Phoenixdactylifera' asteryellowsphytoplasma,'Phoenix dactylifera' aster yellows phytoplasma,remove punctuation,NCBI
+'Santalum album' phytoplasma,'Santalum album' phytoplasma,standard,NCBI
+Bittarella massiliensis,Bittarella massiliensis (ex Durand et al. 2017),remove text in grouping syms,NCBI
+75 Or 55 MCQ,55 Or 75 MCQ,swap words around conjunctions,PhenX Toolkit
+Aeromonas sp. Ae712011,Aeromonas sp. Ae71(2011),remove grouping syms,NCBI
+Acrocarpospora sp. 322D07,Acrocarpospora sp.,user rep,(Derived) Bacteria Root
+act Or Postural Tremor RUE,Action Or Postural Tremor RUE,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 200PM,2DaysBeforeYesterday ActivityNumber 200PM Other,remove stop words,PhenX Toolkit
+12 month bidi Use,12 Month Bidis Use,remove suffix,PhenX Toolkit
+12Month Crystal MethUse,12 Month Crystal Meth Use,remove punctuation,PhenX Toolkit
+12 Month Heroin Use,12 Month Heroin Use,standard,PhenX Toolkit
+Candidatus Cyrtobacter sp.,Candidatus Cyrtobacter sp. (ex Euplotes eurystomus),remove text in grouping syms,NCBI
+75 Or 67 MCQ,67 Or 75 MCQ,swap words around conjunctions,PhenX Toolkit
+Afipia sp. PVC0.1X,Afipia sp. PVC(0.1)X,remove grouping syms,NCBI
+Actinoalloteichus cyanogriseus DSM 43889,Actinoalloteichus caeruleus DSM 43889,user rep,NCBI
+AddictionSeverity alc AnyUse Administration,AddictionSeverity Alcohol AnyUse Administration,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 800AM,2DaysBeforeYesterday ActivityNumber 800AM Other,remove stop words,PhenX Toolkit
+12 month Heroin without needl use,12 Month Heroin Without Needle Use,remove suffix,PhenX Toolkit
+12Month MDMAUse,12 Month MDMA Use,remove punctuation,PhenX Toolkit
+"2,4-D degrading bacterium B6-10","2,4-D degrading bacterium B6-10",standard,NCBI
+Halomonas sp. 71_50.2mbsf,Halomonas sp. 71_(IO)_50.2mbsf,remove text in grouping syms,NCBI
+Child Care Quality Younger Anyone Baby For Caring,Child Care Quality Younger Anyone Caring For Baby,swap words around conjunctions,PhenX Toolkit
+Agrobacterium sp. JK42011,Agrobacterium sp. JK4(2011),remove grouping syms,NCBI
+Actinomadura longicatena,Actinocorallia longicatena,user rep,NCBI
+AddictionSeverity alc ToIntoxication Lifetime,AddictionSeverity Alcohol ToIntoxication Lifetime,replace keywords,PhenX Toolkit
+30Day Sedatives Using Getting,30Day Sedatives Using Getting Over,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 1000AM,2DaysBeforeYesterday ActivityNumber 1000AM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 1000AMOther,2DaysBeforeYesterday ActivityNumber 1000AM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1030PM,2DaysBeforeYesterday ActivityNumber 1030PM,standard,PhenX Toolkit
+Streptomyces sp. 196-3.2-CV-H26-06,Streptomyces sp. 196-3.2-CV-H26(h)-06,remove text in grouping syms,NCBI
+Cocaine Need Effect For More,Cocaine Need More For Effect,swap words around conjunctions,PhenX Toolkit
+Arthrobacter sp. 282011,Arthrobacter sp. 28(2011),remove grouping syms,NCBI
+Actinotalea sp. CF5-4,Actinotalea ferrariae CF5-4,user rep,NCBI
+AddictionSeverity Drug Problems prior Month,AddictionSeverity Drug Problems Past Month,replace keywords,PhenX Toolkit
+30Day Stimulants Using Getting,30Day Stimulants Using Getting Over,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 1230PM other,2DaysBeforeYesterday ActivityNumber 1230PM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber1230PM WorkList,2DaysBeforeYesterday ActivityNumber 1230PM Work List,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 700AM,2DaysBeforeYesterday ActivityNumber 700AM,standard,PhenX Toolkit
+Wolbachia endosymbiont of Coremacera marginata,Wolbachia endosymbiont (group A) of Coremacera marginata,remove text in grouping syms,NCBI
+Conned Money For People,Conned People For Money,swap words around conjunctions,PhenX Toolkit
+Arthrobacter sp. bD112011,Arthrobacter sp. bD11(2011),remove grouping syms,NCBI
+Aerococcus viridans strain LL1,Aerococcus viridans LL1,user rep,NCBI
+AddictionSeverity Martial sts Satisified,AddictionSeverity Martial Status Satisified,replace keywords,PhenX Toolkit
+Cigarette Would Taste Good,A Cigarette Would Taste Good,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 700AM other,2DaysBeforeYesterday ActivityNumber 700AM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber730AMWork List,2DaysBeforeYesterday ActivityNumber 730AM Work List,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 830AM,2DaysBeforeYesterday ActivityNumber 830AM,standard,PhenX Toolkit
+Wolbachia endosymbiont of Parapoynx stratiotata,Wolbachia endosymbiont (group B) of Parapoynx stratiotata,remove text in grouping syms,NCBI
+Diverticulosis Or Diverticulitis,Diverticulitis Or Diverticulosis,swap words around conjunctions,PhenX Toolkit
+Bacillaceae bacterium 1944_FYM2,Bacillaceae bacterium 1944_FYM(2),remove grouping syms,NCBI
+'Aeromonas salmonicida subsp. flounderacida',Aeromonas salmonicida subsp. flounderacida,user rep,NCBI
+AddictionSeverity PaidDays prior Month,AddictionSeverity PaidDays Past Month,replace keywords,PhenX Toolkit
+Ability Make GrownUp Sentences,Ability To Make GrownUp Sentences,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 930am,2DaysBeforeYesterday ActivityNumber 930AM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber930AM Work List,2DaysBeforeYesterday ActivityNumber 930AM Work List,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 930PM Work List,2DaysBeforeYesterday ActivityNumber 930PM Work List,standard,PhenX Toolkit
+sp. KITNT-3,[Bacillus] sp. KITNT-3,remove text in grouping syms,NCBI
+Do Almost Cigarette For Anything,Do Almost Anything For Cigarette,swap words around conjunctions,PhenX Toolkit
+Bacillaceae bacterium 2003_NPK8,Bacillaceae bacterium 2003_NPK(8),remove grouping syms,NCBI
+Aeromonas sp. F518,Aeromonas tecta,user rep,NCBI
+AddictionSeverity SeriousProblems Mother prior Month,AddictionSeverity SeriousProblems Mother Past Month,replace keywords,PhenX Toolkit
+Able Control Irritations,Able To Control Irritations,remove stop words,PhenX Toolkit
+30 Day sed use,30 Day Sedative Use,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel 100PM,2DaysBeforeYesterday ExertionLevel 100PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 1030PM,2DaysBeforeYesterday ExertionLevel 1030PM,standard,PhenX Toolkit
+piliforme,[Clostridium] piliforme,remove text in grouping syms,NCBI
+Drug Aftereffects For Medicine,Drug Medicine For Aftereffects,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. 372008,Bacillus sp. 37(2008),remove grouping syms,NCBI
+Oscillatoriaceae cyanobacterium sp. BLCCM62,Affixifilum floridanum BLCC-M62,user rep,NCBI
+AddictionSeverity SeriousProblems Neighbors prior Month,AddictionSeverity SeriousProblems Neighbors Past Month,replace keywords,PhenX Toolkit
+Able Stop Using Drugs,Able To Stop Using Drugs,remove stop words,PhenX Toolkit
+30Day frequenc Count,30Day Frequency Count,remove suffix,PhenX Toolkit

alcohol_50_bacteria_50/train.csv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:274c68d7be1b7dcaae63027460aa95f707d64d1e27c53f3f0f100c10873a3fa6
+size 30924116

alcohol_50_bacteria_50/valid.csv

@@ -0,0 +1,201 @@
+representation,harmonization_standard,variation_type,source_terminology
+Bacillaceae bacterium 1944_NPK8,Bacillaceae bacterium 1944_NPK(8),remove grouping syms,NCBI
+Acinetobacter sp. paid-121,Acinetobacter sp. P-121,replace keywords,NCBI
+Bacillus sp. 239-3.1-LH-Heh-06,Bacillus sp. 239-3.1-LH-Heh(h)-06,remove text in grouping syms,NCBI
+Bacillus sp. A32003a,Bacillus sp. A3(2003a),remove grouping syms,NCBI
+2DaysBeforeYesterday ActivityNumber 730PM,2DaysBeforeYesterday ActivityNumber 730PM,standard,PhenX Toolkit
+AddictionSeverity Martial sts Length,AddictionSeverity Martial Status Length,replace keywords,PhenX Toolkit
+Acinetobacter baumannii strain 113,Acinetobacter baumannii 113,user rep,NCBI
+Adults Sold Dealt Drugs,Adults Who Sold Dealt Drugs,remove stop words,PhenX Toolkit
+sp. NT N53,[Salibacillus] sp. NT N53,remove text in grouping syms,NCBI
+'Vigna radiata' bud prolifer phytoplasma,'Vigna radiata' bud proliferation phytoplasma,remove suffix,NCBI
+Lactobacillus sp. L329D02,Lactobacillus sp. L329(LBF2)D02,remove text in grouping syms,NCBI
+2DaysBeforeYesterday ExertionLevel 900AM,2DaysBeforeYesterday ExertionLevel 900AM,standard,PhenX Toolkit
+torques L2-14,[Ruminococcus] torques L2-14,remove text in grouping syms,NCBI
+Actinobacillus equuli-like,Actinobacillus equuli subsp. haemolyticus,user rep,NCBI
+Albertania egbensis N14-MA1,Albertania egbensis,user rep,(Derived) Bacteria Root
+Agromyces cerinus subsp. cerinus,Agromyces cerinus,user rep,(Derived) Bacteria Root
+12 Month Rohypnol Use,12 Month Rohypnol Use,standard,PhenX Toolkit
+Adherence Medication Often Skip Dose Medicine Doctor,Adherence Medication Often Skip Dose Medicine Before Doctor,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber1100PM,2DaysBeforeYesterday ActivityNumber 1100PM,remove punctuation,PhenX Toolkit
+Aeromonas sp. D22011,Aeromonas sp. D2(2011),remove grouping syms,NCBI
+AddictionSeverity Sexual Abuse prior Month,AddictionSeverity Sexual Abuse Past Month,replace keywords,PhenX Toolkit
+12 Month Narcotic Use,12 Month Other Narcotic Use,remove stop words,PhenX Toolkit
+Ever GoneTo Headaches For Hospital,Ever GoneTo Hospital For Headaches,swap words around conjunctions,PhenX Toolkit
+Wolbachia endosymbiont of Alloplasta piceator,Wolbachia endosymbiont (group A) of Alloplasta piceator,remove text in grouping syms,NCBI
+20Drinks One Day LastTime Month,20Drinks One Day LastTime Month,standard,PhenX Toolkit
+Acidovorax sp. NCPPB 3576,Acidovorax sp. NCPPB,user rep,(Derived) Bacteria Root
+Microbacterium sp. G2W6,Microbacterium sp. G2W6(B),remove text in grouping syms,NCBI
+Adults Gotten High Or Drunk,Adults Gotten Drunk Or High,swap words around conjunctions,PhenX Toolkit
+Acute Bleeding Take Factor Prescribed,Acute Bleeding Take More Factor Than Prescribed,remove stop words,PhenX Toolkit
+Aeromonas sp. CPO 4.0026,Aeromonas sp. CPO,user rep,(Derived) Bacteria Root
+'Amaranth chlorisis' phytoplasma,'Amaranth chlorisis' phytoplasma,standard,NCBI
+'Carpoxylonmacrospermum' phytoplasma,'Carpoxylon macrospermum' phytoplasma,remove punctuation,NCBI
+12MonthLSDUse,12 Month LSD Use,remove punctuation,PhenX Toolkit
+Lactococcus sp. SI-Km-1B,Lactococcus sp. SI-Km(R)-1B,remove text in grouping syms,NCBI
+Agitococcus sp.,Agitococcus,user rep,(Derived) Bacteria Root
+Bacillus sp. 1b-9 6,Bacillus sp. 1b-9 (6),remove grouping syms,NCBI
+2daysbeforeyesterday activitynumb 800pm work List,2DaysBeforeYesterday ActivityNumber 800PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 830PM Work List,2DaysBeforeYesterday ActivityNumber 830PM Work List,standard,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 230PM,2DaysBeforeYesterday ExertionLevel 230PM,standard,PhenX Toolkit
+Autoimmune Diseases SLE Or Lupus,Autoimmune Diseases Lupus Or SLE,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity alc ToIntoxication PastMonth,AddictionSeverity Alcohol ToIntoxication PastMonth,replace keywords,PhenX Toolkit
+Affordability Problems Access Dental Care Delay Worry 1,Affordability Problems Access Dental Care Delay Worry Who 1,remove stop words,PhenX Toolkit
+'Trema laevigata' witches'-broom phytoplasma,'Trema laevigata' witches'-broom phytoplasma,standard,NCBI
+'Prunus salicina' phytoplasma PLKr1,'Prunus salicina' phytoplasma,user rep,(Derived) Bacteria Root
+Bacillus sp. 562012,Bacillus sp. 56(2012),remove grouping syms,NCBI
+Corynebacterium sp. ATCC 21698,Alcaligenes viscolactis S-2,user rep,NCBI
+'Spartium junceum' phytoplasma SI04-S4,'Spartium junceum' phytoplasma SI04-S4,standard,NCBI
+'Croton sparsiflorus' phytoplasma,'Croton sparsiflorus' phytoplasma,standard,NCBI
+Adherence Medication Often Refill Medicine Cost Money,Adherence Medication Often Not Refill Medicine Cost Money,remove stop words,PhenX Toolkit
+Arthrobacter sp. A622011,Arthrobacter sp. A62(2011),remove grouping syms,NCBI
+Tetrathiobacter sp. LC410,Advenella sp. LC410,user rep,NCBI
+2DaysBeforeYesterday ExertionLevel 430PM,2DaysBeforeYesterday ExertionLevel 430PM,standard,PhenX Toolkit
+30 Days Ecig Flavor i,30 Days Ecig Flavor Indicator,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 630pm Other,2DaysBeforeYesterday ActivityNumber 630PM Other,remove suffix,PhenX Toolkit
+2daysbeforeyesterday activitynumb 330PM other,2DaysBeforeYesterday ActivityNumber 330PM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber100PM,2DaysBeforeYesterday ActivityNumber 100PM,remove punctuation,PhenX Toolkit
+Bacillus sp. A12008,Bacillus sp. A1(2008),remove grouping syms,NCBI
+Able Drink Stimulants,Able To Drink More Stimulants,remove stop words,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel 300PM,2DaysBeforeYesterday ExertionLevel 300PM,remove punctuation,PhenX Toolkit
+Actinopolyspora sp. H55,Actinopolyspora mzabensis,user rep,NCBI
+AddictionSeverity Troubled alc Problems,AddictionSeverity Troubled Alcohol Problems,replace keywords,PhenX Toolkit
+AddictionSeverity Attempt Suicide prior Month,AddictionSeverity Attempt Suicide Past Month,replace keywords,PhenX Toolkit
+50 Or 27 MCQ,27 Or 50 MCQ,swap words around conjunctions,PhenX Toolkit
+35 Or 24 MCQ,24 Or 35 MCQ,swap words around conjunctions,PhenX Toolkit
+20Week Weight Lbs,20Week Weight Before Lbs,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 630PM,2DaysBeforeYesterday ActivityNumber 630PM,standard,PhenX Toolkit
+Acidithiobacillales bacterium SG8_45,Acidithiobacillales bacterium,user rep,(Derived) Bacteria Root
+30Day quantiti Coded,30Day Quantity Coded,remove suffix,PhenX Toolkit
+2daysbeforeyesterday activitynumb 1130pm,2DaysBeforeYesterday ActivityNumber 1130PM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 830AM WorkList,2DaysBeforeYesterday ActivityNumber 830AM Work List,remove punctuation,PhenX Toolkit
+Acidobacteriota bacterium T6-6.17,Acidobacteriota bacterium,user rep,(Derived) Bacteria Root
+2DaysBeforeYesterday ActivityNumber700PM,2DaysBeforeYesterday ActivityNumber 700PM,remove punctuation,PhenX Toolkit
+30 Day quaalud use,30 Day Quaalude Use,remove suffix,PhenX Toolkit
+Acinetobacter sp. WZ22011,Acinetobacter sp. WZ2(2011),remove grouping syms,NCBI
+2DaysBeforeYesterday ActivityNumber330PMWork List,2DaysBeforeYesterday ActivityNumber 330PM Work List,remove punctuation,PhenX Toolkit
+Bacillus sp. 4S22015,Bacillus sp. 4S2(2015),remove grouping syms,NCBI
+20 Drinks One Day,20 Drinks In One Day,remove stop words,PhenX Toolkit
+EatingScale Child Food For AlwaysAsking,EatingScale Child AlwaysAsking For Food,swap words around conjunctions,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 230PM,2DaysBeforeYesterday ActivityNumber 230PM,remove punctuation,PhenX Toolkit
+felis,[Haemophilus] felis,remove text in grouping syms,NCBI
+25 Or 14 MCQ,14 Or 25 MCQ,swap words around conjunctions,PhenX Toolkit
+Arthrobacter sp. 3-552012,Arthrobacter sp. 3-55(2012),remove grouping syms,NCBI
+'Zinnia elegans' phyllodyphytoplasma,'Zinnia elegans' phyllody phytoplasma,remove punctuation,NCBI
+Adenoma Advanced nbr,Adenoma Advanced Number,replace keywords,PhenX Toolkit
+30 Day Marijuana Hashish Use,30 Day Marijuana Hashish Use,standard,PhenX Toolkit
+FEF90 Or Blank4,Blank4 Or FEF90,swap words around conjunctions,PhenX Toolkit
+Administrative Assistant Relationship Specify,Administrative Assistant Relationship Other Specify,remove stop words,PhenX Toolkit
+'Spinacia oleracea' phyllodi phytoplasma,'Spinacia oleracea' phyllody phytoplasma,remove suffix,NCBI
+30 DayCrackUse,30 Day Crack Use,remove punctuation,PhenX Toolkit
+AddictionSeverity alc AnyUse PastMonth,AddictionSeverity Alcohol AnyUse PastMonth,replace keywords,PhenX Toolkit
+30 Or 25 MCQ,25 Or 30 MCQ,swap words around conjunctions,PhenX Toolkit
+candidate division CD12 bacterium JGI 0000014-C22,Aerophobetes bacterium JGI 0000014-C22,user rep,NCBI
+2DaysBeforeYesterday ActivityNumber 230PM Other,2DaysBeforeYesterday ActivityNumber 230PM Other,standard,PhenX Toolkit
+Acidimicrobiia bacterium BACL6 MAG-120924-bin43,Acidimicrobiia bacterium,user rep,(Derived) Bacteria Root
+Acinetobacter sp. Bouvet382,Acinetobacter sp. Bouvet382(K.Irino 105/85),remove text in grouping syms,NCBI
+Bacillus sp. B122012b,Bacillus sp. B12(2012b),remove grouping syms,NCBI
+Agrobacterium genomosp. 1 str. S56,Agrobacterium fabacearum S56,user rep,NCBI
+Viola tricolor yellows little leaf phytoplasma,'Viola tricolor' yellows and little leaf phytoplasma,remove stop words,NCBI
+'Empoasca faba' phytoplasma,'Empoasca fabae' phytoplasma,remove suffix,NCBI
+anseris,[Mycoplasma] anseris,remove text in grouping syms,NCBI
+'Acalypha indica' phytoplasma,'Acalypha indica',user rep,(Derived) Bacteria Root
+Acinetobacter sp. A342011,Acinetobacter sp. A34(2011),remove grouping syms,NCBI
+AddictionSeverity Suicidal Thoughts prior Month,AddictionSeverity Suicidal Thoughts Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel1000AM,2DaysBeforeYesterday ExertionLevel 1000AM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber300PM Other,2DaysBeforeYesterday ActivityNumber 300PM Other,remove punctuation,PhenX Toolkit
+3 Months Chest Attack time,3 Months Chest Attack Times,remove suffix,PhenX Toolkit
+Xanthomonas sp. Pd-E-l-D-7(6),Xanthomonas sp. Pd-E-(s)-l-D-7(6),remove unit,NCBI
+30Day OtherDrugs Using Getting,30Day OtherDrugs Using Getting Over,remove stop words,PhenX Toolkit
+Days Training Or School,Days School Or Training,swap words around conjunctions,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 1030AM,2DaysBeforeYesterday ExertionLevel 1030AM,standard,PhenX Toolkit
+Fractured Vertebrae Or Spine,Fractured Spine Or Vertebrae,swap words around conjunctions,PhenX Toolkit
+Streptomyces sp. 229-4.1-LH-H14-02,Streptomyces sp. 229-4.1-LH-H14(s)-02,remove unit,NCBI
+aaa surgeri,AAA Surgery,remove suffix,PhenX Toolkit
+30 day amphetamin use,30 Day Amphetamines Use,remove suffix,PhenX Toolkit
+AddictionSeverity alc Problems Past Month,AddictionSeverity Alcohol Problems Past Month,replace keywords,PhenX Toolkit
+Vitellibacter sp. UBA3599,Aequorivita sp. UBA3599,user rep,NCBI
+20Drinks OneDayFirstTime Age,20Drinks One Day FirstTime Age,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1100AM,2DaysBeforeYesterday ActivityNumber 1100AM Other,remove stop words,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel200PM,2DaysBeforeYesterday ExertionLevel 200PM,remove punctuation,PhenX Toolkit
+'Picris echioides'phyllodyphytoplasma,'Picris echioides' phyllody phytoplasma,remove punctuation,NCBI
+85 Or 31 MCQ,31 Or 85 MCQ,swap words around conjunctions,PhenX Toolkit
+2daysbeforeyesterday activitynumb 300pm,2DaysBeforeYesterday ActivityNumber 300PM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 130PM,2DaysBeforeYesterday ExertionLevel 130PM,standard,PhenX Toolkit
+faecis JCM 15917,[Ruminococcus] faecis JCM 15917,remove text in grouping syms,NCBI
+action Excited Marijuana,Act Excited Marijuana,replace keywords,PhenX Toolkit
+Acinetobacter sp. 9282010,Acinetobacter sp. 928(2010),remove grouping syms,NCBI
+Have Seizure Epilepsy Or Disorder,Have Seizure Disorder Or Epilepsy,swap words around conjunctions,PhenX Toolkit
+dacunhae ATCC 21192,[Pseudomonas] dacunhae ATCC 21192,remove text in grouping syms,NCBI
+2daysbeforeyesterday activitynumb 1030AM,2DaysBeforeYesterday ActivityNumber 1030AM,remove suffix,PhenX Toolkit
+Buchnera aphidicola,Buchnera aphidicola (Aphis craccivora),remove text in grouping syms,NCBI
+Agrococcus sp. AD-G4,Agrococcus sp.,user rep,(Derived) Bacteria Root
+12 Month Andro Use,12 Month Andro Use,standard,PhenX Toolkit
+Cancer Of Rectum Or Colon,Cancer Of Colon Or Rectum,swap words around conjunctions,PhenX Toolkit
+2DaysBeforeYesterdayExertionLevel1100PM,2DaysBeforeYesterday ExertionLevel 1100PM,remove punctuation,PhenX Toolkit
+action Without Thinking Make Worse,Act Without Thinking Make Worse,replace keywords,PhenX Toolkit
+namnetense SK182B-JCVI,[Propionibacterium] namnetense SK182B-JCVI,remove text in grouping syms,NCBI
+Acidovorax sp. p42011,Acidovorax sp. p4(2011),remove grouping syms,NCBI
+Actinotalea sp. BY-33,Actinotalea soli,user rep,NCBI
+2DaysBeforeYesterday ActivityNumber 800PM,2DaysBeforeYesterday ActivityNumber 800PM Other,remove stop words,PhenX Toolkit
+AddictionSeverity Spent On alc,AddictionSeverity Spent On Alcohol,replace keywords,PhenX Toolkit
+30day frequenc estim code,30Day Frequency Estimate Coded,remove suffix,PhenX Toolkit
+AddictionSeverity Violent Behavior prior Month,AddictionSeverity Violent Behavior Past Month,replace keywords,PhenX Toolkit
+Bacillus sp. B-22008,Bacillus sp. B-2(2008),remove grouping syms,NCBI
+50 Or 47 MCQ,47 Or 50 MCQ,swap words around conjunctions,PhenX Toolkit
+Ability Get Message Across,Ability To Get Message Across,remove stop words,PhenX Toolkit
+action Out Dreams HowOften Months,Act Out Dreams HowOften Months,replace keywords,PhenX Toolkit
+'Ageratum conyzoid' phytoplasma,'Ageratum conyzoide' phytoplasma,remove suffix,NCBI
+2DaysBeforeYesterday ActivityNumber 300PM Work List,2DaysBeforeYesterday ActivityNumber 300PM Work List,standard,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 1200PM,2DaysBeforeYesterday ActivityNumber 1200PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1130AM Work List,2DaysBeforeYesterday ActivityNumber 1130AM Work List,standard,PhenX Toolkit
+Bacillus sp. AS2 2008,Bacillus sp. AS2 (2008),remove grouping syms,NCBI
+2DaysBeforeYesterdayExertionLevel 730PM,2DaysBeforeYesterday ExertionLevel 730PM,remove punctuation,PhenX Toolkit
+Ability Understand Others Say,Ability Understand What Others Say,remove stop words,PhenX Toolkit
+'Alternanthera ficoidea' yellow leafroll phytoplasma,'Alternanthera ficoidea' yellow leaf roll phytoplasma,remove punctuation,NCBI
+Acinetobacter sp. 502010,Acinetobacter sp. 50(2010),remove grouping syms,NCBI
+Aeromonas sp. B12011,Aeromonas sp. B1(2011),remove grouping syms,NCBI
+30Day frequenc Estimate,30Day Frequency Estimate,remove suffix,PhenX Toolkit
+Bacillus sp. 572010,Bacillus sp. 57(2010),remove grouping syms,NCBI
+'cicadellida sp.' phytoplasma,'Cicadellidae sp.' phytoplasma,remove suffix,NCBI
+20week weight gain Kgs,20Week Weight Gained Kgs,remove suffix,PhenX Toolkit
+Harm Lsd Twice Or Once,Harm Lsd Once Or Twice,swap words around conjunctions,PhenX Toolkit
+Adherence Medication Often Forget Take Medicine Than Once Day,Adherence Medication Often Forget Take Medicine More Than Once Day,remove stop words,PhenX Toolkit
+Bacillus sp. A32013,Bacillus sp. A3(2013),remove grouping syms,NCBI
+benzopyrene-degrading bacterium BPC8,benzo[a]pyrene-degrading bacterium BPC8,remove text in grouping syms,NCBI
+"2,4-D-degrad bacterium TFD13","2,4-D-degrading bacterium TFD13",remove suffix,NCBI
+12 month quaalud use,12 Month Quaalude Use,remove suffix,PhenX Toolkit
+Activities Community BoysGirls Clubs,Activities In Community BoysGirls Clubs,remove stop words,PhenX Toolkit
+Aeromonas sp. Ae22011,Aeromonas sp. Ae2(2011),remove grouping syms,NCBI
+Adenoma Exact numb Determined,Adenoma Exact Number Determined,replace keywords,PhenX Toolkit
+85 Or 80 MCQ,80 Or 85 MCQ,swap words around conjunctions,PhenX Toolkit
+Buchnera aphidicola str. JF99,Buchnera aphidicola str. JF99 (Acyrthosiphon pisum),remove text in grouping syms,NCBI
+AddictionSeverity alc Treatment,AddictionSeverity Alcohol Treatment,replace keywords,PhenX Toolkit
+Arthrobacter sp. 167-4.2-CV-H26-02,Arthrobacter sp. 167-4.2-CV-H26(h)-02,remove text in grouping syms,NCBI
+Dehalococcoides sp. enrichment culture clone KS9,Dehalococcoides sp. enrichment culture clone KS9(KSRdA04),remove text in grouping syms,NCBI
+AddictionSeverity TroubleUnderstanding prior Month,AddictionSeverity TroubleUnderstanding Past Month,replace keywords,PhenX Toolkit
+endosymbiont of Exorista sorbillans,endosymbiont of Exorista sorbillans (Channapatna pop.),remove text in grouping syms,NCBI
+PACC 8140,[Phormidesmis molle] PACC 8140,remove text in grouping syms,NCBI
+'Taxilluschinensis'phytoplasma,'Taxillus chinensis' phytoplasma,remove punctuation,NCBI
+First Go And Up,First Up And Go,swap words around conjunctions,PhenX Toolkit
+Hip Fracture Report OR Confirmation,Hip Fracture Confirmation OR Report,swap words around conjunctions,PhenX Toolkit
+16SrXXXVI,16SrXXXVI (Foxtail palm yellow decline group),remove text in grouping syms,NCBI
+AddictionSeverity adm Criminal Justice,AddictionSeverity Admission Criminal Justice,replace keywords,PhenX Toolkit
+Bacillus sp. A192012b,Bacillus sp. A19(2012b),remove grouping syms,NCBI
+Drink Or Eat,Eat Or Drink,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Treatment alc Problems,AddictionSeverity Treatment Alcohol Problems,replace keywords,PhenX Toolkit
+Consider All Disadvantages And Advantages,Consider All Advantages And Disadvantages,swap words around conjunctions,PhenX Toolkit
+2daysbeforeyesterday activitynumb 1230pm,2DaysBeforeYesterday ActivityNumber 1230PM,remove suffix,PhenX Toolkit
+Activities Community Scouting,Activities In Community Scouting,remove stop words,PhenX Toolkit
+Actinomadura sp. OS3-83,Actinomadura terrae,user rep,NCBI
+2DaysBeforeYesterday ActivityNumber 100PM Work List,2DaysBeforeYesterday ActivityNumber 100PM Work List,standard,PhenX Toolkit
+Drink Effect For Less,Drink Less For Effect,swap words around conjunctions,PhenX Toolkit
+3000HzRestest LeftEarCNO,3000HzRestest Left Ear CNO,remove punctuation,PhenX Toolkit
+Xanthomonas sp. Pd-E-l-D-9(20),Xanthomonas sp. Pd-E-(s)-l-D-9(20),remove unit,NCBI
+Affected Side Numbness Dizziness,Affected Side Numbness With Dizziness,remove stop words,PhenX Toolkit
+Ability Start Conversation Children,Ability Start Conversation Other Children,remove stop words,PhenX Toolkit
+AddictionSeverity Detox alc,AddictionSeverity Detox Alcohol,replace keywords,PhenX Toolkit
+'Phoenix canariensis' phytoplasma,'Phoenix canariensis' lethal yellowing phytoplasma,user rep,NCBI
+2DaysBeforeYesterday ActivityNumber 1200PM Work List,2DaysBeforeYesterday ActivityNumber 1200PM Work List,standard,PhenX Toolkit
+Adults Used Drugs,Adults Who Used Drugs,remove stop words,PhenX Toolkit
+Wolbachia endosymbiont of Eristalinus aeneus,Wolbachia endosymbiont (group A) of Eristalinus aeneus,remove text in grouping syms,NCBI

alcohol_75_bacteria_25/id_test.csv

@@ -0,0 +1,101 @@
+representation,harmonization_standard,variation_type,source_terminology
+Bacillus sp. 027-2.2-LH-H16-04,Bacillus sp. 027-2.2-LH-H16(s)-04,remove unit,NCBI
+Candidatus Cyrtobacter sp.,Candidatus Cyrtobacter sp. (ex Euplotes eurystomus),remove text in grouping syms,NCBI
+30 Or 28 MCQ,28 Or 30 MCQ,swap words around conjunctions,PhenX Toolkit
+Acidovorax sp. p42011,Acidovorax sp. p4(2011),remove grouping syms,NCBI
+'Eleusine indica' phytoplasma,'Eleusine indica',user rep,(Derived) Bacteria Root
+Acinetobacter sp. paid-155,Acinetobacter sp. P-155,replace keywords,NCBI
+20Week Weight Lbs,20Week Weight Before Lbs,remove stop words,PhenX Toolkit
+'crotalaria junciea' aster yellow phytoplasma,'Crotalaria junciea' aster yellows phytoplasma,remove suffix,NCBI
+'Cucumissativus'phyllody phytoplasmaYazd,'Cucumis sativus' phyllody phytoplasma Yazd,remove punctuation,NCBI
+'Santalum album' phytoplasma,'Santalum album' phytoplasma,standard,NCBI
+Streptomyces sp. 229-4.1-LH-H14-02,Streptomyces sp. 229-4.1-LH-H14(s)-02,remove unit,NCBI
+piliforme,[Clostridium] piliforme,remove text in grouping syms,NCBI
+85 Or 69 MCQ,69 Or 85 MCQ,swap words around conjunctions,PhenX Toolkit
+Aeromonas sp. H102011,Aeromonas sp. H10(2011),remove grouping syms,NCBI
+Acidimicrobiia bacterium REDSEA-S14_B4,Acidimicrobiia bacterium,user rep,(Derived) Bacteria Root
+action Out Dreams HowOften Years,Act Out Dreams HowOften Years,replace keywords,PhenX Toolkit
+30 Day Hallucinogen Use,30 Day Other Hallucinogen Use,remove stop words,PhenX Toolkit
+'Zinnia elegans' phyllodi phytoplasma,'Zinnia elegans' phyllody phytoplasma,remove suffix,NCBI
+12 MonthCocaineUse,12 Month Cocaine Use,remove punctuation,PhenX Toolkit
+12 Month Crystal Meth Use,12 Month Crystal Meth Use,standard,PhenX Toolkit
+Xanthomonas sp. Pd-E-l-D-7(6),Xanthomonas sp. Pd-E-(s)-l-D-7(6),remove unit,NCBI
+PACC 8140,[Phormidesmis molle] PACC 8140,remove text in grouping syms,NCBI
+80 Or 78 MCQ,78 Or 80 MCQ,swap words around conjunctions,PhenX Toolkit
+Afipia sp. PVC0.1X,Afipia sp. PVC(0.1)X,remove grouping syms,NCBI
+Acidobacteriota bacterium T6-6.17,Acidobacteriota bacterium,user rep,(Derived) Bacteria Root
+action Without Thinking When Happy,Act Without Thinking When Happy,replace keywords,PhenX Toolkit
+30Day Stimulants Using Getting,30Day Stimulants Using Getting Over,remove stop words,PhenX Toolkit
+20drink one day firsttim age,20Drinks One Day FirstTime Age,remove suffix,PhenX Toolkit
+12MonthOxyContinUse,12 Month OxyContin Use,remove punctuation,PhenX Toolkit
+12 Month Ritalin Use,12 Month Ritalin Use,standard,PhenX Toolkit
+unclassified Gordonia,unclassified Gordonia (in: high G+C Gram-positive bacteria),remove text in grouping syms,NCBI
+Annoyed With Stimulants For Myself,Annoyed With Myself For Stimulants,swap words around conjunctions,PhenX Toolkit
+Arthrobacter sp. bA402011,Arthrobacter sp. bA40(2011),remove grouping syms,NCBI
+Actinobacillus cf. equuli,Actinobacillus equuli subsp. haemolyticus,user rep,NCBI
+action Without Thinking When Upset,Act Without Thinking When Upset,replace keywords,PhenX Toolkit
+Ability Get Message Across,Ability To Get Message Across,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 100pm Work List,2DaysBeforeYesterday ActivityNumber 100PM Work List,remove suffix,PhenX Toolkit
+12 MonthRohypnolUse,12 Month Rohypnol Use,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1030AM Other,2DaysBeforeYesterday ActivityNumber 1030AM Other,standard,PhenX Toolkit
+uncultured bacterium,uncultured bacterium (gcode 4),remove text in grouping syms,NCBI
+Money For Begged,Begged For Money,swap words around conjunctions,PhenX Toolkit
+Arthrobacter sp. bD112011,Arthrobacter sp. bD11(2011),remove grouping syms,NCBI
+Actinomadura longicatena,Actinocorallia longicatena,user rep,NCBI
+act Or Postural Tremor LUE,Action Or Postural Tremor LUE,replace keywords,PhenX Toolkit
+Ability Make GrownUp Sentences,Ability To Make GrownUp Sentences,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 1030pm,2DaysBeforeYesterday ActivityNumber 1030PM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber1100AM,2DaysBeforeYesterday ActivityNumber 1100AM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1130AM Work List,2DaysBeforeYesterday ActivityNumber 1130AM Work List,standard,PhenX Toolkit
+uncultured bacterium L83J,uncultured bacterium (human infant) L83J,remove text in grouping syms,NCBI
+Blames Mistakes For Others,Blames Others For Mistakes,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. A12008,Bacillus sp. A1(2008),remove grouping syms,NCBI
+Actinomadura sp. OS3-83,Actinomadura terrae,user rep,NCBI
+AddictionSeverity alc AnyUse Lifetime,AddictionSeverity Alcohol AnyUse Lifetime,replace keywords,PhenX Toolkit
+Ability Understand Others Say,Ability Understand What Others Say,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 1200PM,2DaysBeforeYesterday ActivityNumber 1200PM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1230PMWork List,2DaysBeforeYesterday ActivityNumber 1230PM Work List,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 200PM,2DaysBeforeYesterday ActivityNumber 200PM,standard,PhenX Toolkit
+FEF90 Or Blank4,Blank4 Or FEF90,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. A32013,Bacillus sp. A3(2013),remove grouping syms,NCBI
+Vitellibacter sp. 2-4,Aequorivita sp. 2-4,user rep,NCBI
+AddictionSeverity alc Treatment,AddictionSeverity Alcohol Treatment,replace keywords,PhenX Toolkit
+Able Drink Stimulants,Able To Drink More Stimulants,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 300PM other,2DaysBeforeYesterday ActivityNumber 300PM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 330PM,2DaysBeforeYesterday ActivityNumber 330PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 330PM Other,2DaysBeforeYesterday ActivityNumber 330PM Other,standard,PhenX Toolkit
+Cancer Of Rectum Or Colon,Cancer Of Colon Or Rectum,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. AS2 2008,Bacillus sp. AS2 (2008),remove grouping syms,NCBI
+Alcaligenes sp. HO-1,Alcaligenes ammonioxydans,user rep,NCBI
+AddictionSeverity Anxiety prior Month,AddictionSeverity Anxiety Past Month,replace keywords,PhenX Toolkit
+Able Pace Myself,Able To Pace Myself,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 500pm other,2DaysBeforeYesterday ActivityNumber 500PM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber630PM,2DaysBeforeYesterday ActivityNumber 630PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 700AM,2DaysBeforeYesterday ActivityNumber 700AM,standard,PhenX Toolkit
+Child Care Quality Younger Anyone Baby For Caring,Child Care Quality Younger Anyone Caring For Baby,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. B132011,Bacillus sp. B13(2011),remove grouping syms,NCBI
+Pseudonocardiaceae bacterium RA45,Amycolatopsis arida,user rep,NCBI
+AddictionSeverity EmploymentProblems prior Month,AddictionSeverity EmploymentProblems Past Month,replace keywords,PhenX Toolkit
+Actigraph Returned,Actigraph Not Returned,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 800am,2DaysBeforeYesterday ActivityNumber 800AM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 800AMOther,2DaysBeforeYesterday ActivityNumber 800AM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 800AM Work List,2DaysBeforeYesterday ActivityNumber 800AM Work List,standard,PhenX Toolkit
+Cocaine Need Effect For More,Cocaine Need More For Effect,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. C362013,Bacillus sp. C36(2013),remove grouping syms,NCBI
+Anoxybacter fermentans,Anoxybacter,user rep,(Derived) Bacteria Root
+AddictionSeverity Incarcerated Last chg,AddictionSeverity Incarcerated Last Charge,replace keywords,PhenX Toolkit
+Activities Community BoysGirls Clubs,Activities In Community BoysGirls Clubs,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 900AM,2DaysBeforeYesterday ActivityNumber 900AM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber900PM,2DaysBeforeYesterday ActivityNumber 900PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 930AM Work List,2DaysBeforeYesterday ActivityNumber 930AM Work List,standard,PhenX Toolkit
+Consider All Disadvantages And Advantages,Consider All Advantages And Disadvantages,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. E82010,Bacillus sp. E8(2010),remove grouping syms,NCBI
+Apilactobacillus kunkeei EFB6,Apilactobacillus kunkeei,user rep,(Derived) Bacteria Root
+AddictionSeverity Living Arrangements alc Problems,AddictionSeverity Living Arrangements Alcohol Problems,replace keywords,PhenX Toolkit
+Activities Community Service Clubs,Activities In Community Service Clubs,remove stop words,PhenX Toolkit
+30 day quaalud use,30 Day Quaalude Use,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel1030AM,2DaysBeforeYesterday ExertionLevel 1030AM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ExertionLevel 1030PM,2DaysBeforeYesterday ExertionLevel 1030PM,standard,PhenX Toolkit
+Days Training Or School,Days School Or Training,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. GG62015,Bacillus sp. GG6(2015),remove grouping syms,NCBI
+Arenibacter sp. TG409,Arenibacter algicola,user rep,NCBI

alcohol_75_bacteria_25/ood_test.csv

@@ -0,0 +1,101 @@
+representation,harmonization_standard,variation_type,source_terminology
+Pantoea sp. Pd-E-e-N-2(19),Pantoea sp. Pd-E-(s)-e-N-2(19),remove unit,NCBI
+16SrXXXVI,16SrXXXVI (Foxtail palm yellow decline group),remove text in grouping syms,NCBI
+35 Or 15 MCQ,15 Or 35 MCQ,swap words around conjunctions,PhenX Toolkit
+Aeromonas sp. s72024,Aeromonas sp. s7(2024),remove grouping syms,NCBI
+'Elaeis guineensis' stunt phytoplasma,'Elaeis guineensis',user rep,(Derived) Bacteria Root
+action Out Dreams HowOften Weeks,Act Out Dreams HowOften Weeks,replace keywords,PhenX Toolkit
+12 Month Cough Cold Medicine Use,12 Month Cough Or Cold Medicine Use,remove stop words,PhenX Toolkit
+'Hishimonus phyciti' phytoplasma IARI,'Hishimonus phycitis' phytoplasma IARI,remove suffix,NCBI
+'Oplismenusburmannii','Oplismenus burmannii',remove punctuation,(Derived) Bacteria Root
+'Phoenix canariensis' lethal yellowing phytoplasma,'Phoenix canariensis' lethal yellowing phytoplasma,standard,NCBI
+Xanthomonas sp. Pd-E-l-D-9(20),Xanthomonas sp. Pd-E-(s)-l-D-9(20),remove unit,NCBI
+Buchnera aphidicola,Buchnera aphidicola (Schizolachnus obscurus),remove text in grouping syms,NCBI
+25 Or 19 MCQ,19 Or 25 MCQ,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. 1b-9 6,Bacillus sp. 1b-9 (6),remove grouping syms,NCBI
+'Thrinax radiata' yellowing phytoplasma,'Thrinax radiata',user rep,(Derived) Bacteria Root
+AddictionSeverity adm Criminal Justice,AddictionSeverity Admission Criminal Justice,replace keywords,PhenX Toolkit
+12 Month Heroin Needle Use,12 Month Heroin With Needle Use,remove stop words,PhenX Toolkit
+'Phoenix dactylifera' aster yellow phytoplasma,'Phoenix dactylifera' aster yellows phytoplasma,remove suffix,NCBI
+'Picrisechioides'phyllodyphytoplasma,'Picris echioides' phyllody phytoplasma,remove punctuation,NCBI
+'Podocarpus nagi' fasciation phytoplasma,'Podocarpus nagi' fasciation phytoplasma,standard,NCBI
+Lactococcus sp. SI-Km-1B,Lactococcus sp. SI-Km(R)-1B,remove text in grouping syms,NCBI
+30 Or 25 MCQ,25 Or 30 MCQ,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. 572010,Bacillus sp. 57(2010),remove grouping syms,NCBI
+'Vitis vinifera' stolbur phytoplasma,'Vitis vinifera',user rep,(Derived) Bacteria Root
+AddictionSeverity alc AnyUse Administration,AddictionSeverity Alcohol AnyUse Administration,replace keywords,PhenX Toolkit
+12 Month Inhaled Gas Spray Use,12 Month Inhaled Gas Or Spray Use,remove stop words,PhenX Toolkit
+12 month Alcoholic beverag use,12 Month Alcoholic Beverage Use,remove suffix,PhenX Toolkit
+12Month Bidis Use,12 Month Bidis Use,remove punctuation,PhenX Toolkit
+12 Month Marijuana Hashish Use,12 Month Marijuana Hashish Use,standard,PhenX Toolkit
+Microbacterium sp. G2W6,Microbacterium sp. G2W6(B),remove text in grouping syms,NCBI
+60 Or 25 MCQ,25 Or 60 MCQ,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. A192012b,Bacillus sp. A19(2012b),remove grouping syms,NCBI
+Gram-negative heterotrophic acidophile Y008,Acidicaldus organivorans,user rep,NCBI
+AddictionSeverity alc AnyUse PastMonth,AddictionSeverity Alcohol AnyUse PastMonth,replace keywords,PhenX Toolkit
+12 Month Hallucinogen Use,12 Month Other Hallucinogen Use,remove stop words,PhenX Toolkit
+12 month other cocain Use,12 Month Other Cocaine Use,remove suffix,PhenX Toolkit
+12 Month SalviaUse,12 Month Salvia Use,remove punctuation,PhenX Toolkit
+"2,4-D degrading bacterium B6-10","2,4-D degrading bacterium B6-10",standard,NCBI
+Wolbachia endosymbiont of Alloplasta piceator,Wolbachia endosymbiont (group A) of Alloplasta piceator,remove text in grouping syms,NCBI
+85 Or 31 MCQ,31 Or 85 MCQ,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. B52005,Bacillus sp. B5(2005),remove grouping syms,NCBI
+Actinotalea sp. CF5-4,Actinotalea ferrariae CF5-4,user rep,NCBI
+AddictionSeverity Alcohol Problems prior Month,AddictionSeverity Alcohol Problems Past Month,replace keywords,PhenX Toolkit
+20 Drinks One Day,20 Drinks In One Day,remove stop words,PhenX Toolkit
+"2,4-D-degrad bacterium TFD13","2,4-D-degrading bacterium TFD13",remove suffix,NCBI
+2000HzRightEar CNO,2000Hz Right Ear CNO,remove punctuation,PhenX Toolkit
+20Week Weight Gained Kgs,20Week Weight Gained Kgs,standard,PhenX Toolkit
+Wolbachia endosymbiont of Eristalinus aeneus,Wolbachia endosymbiont (group A) of Eristalinus aeneus,remove text in grouping syms,NCBI
+35 Or 34 MCQ,34 Or 35 MCQ,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. DB1332010,Bacillus sp. DB133(2010),remove grouping syms,NCBI
+Polymonas,Agrobacterium,user rep,NCBI
+AddictionSeverity alc ToIntoxication PastMonth,AddictionSeverity Alcohol ToIntoxication PastMonth,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1000PM,2DaysBeforeYesterday ActivityNumber 1000PM Other,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 100pm,2DaysBeforeYesterday ActivityNumber 100PM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber1030AMWorkList,2DaysBeforeYesterday ActivityNumber 1030AM Work List,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1100AM Work List,2DaysBeforeYesterday ActivityNumber 1100AM Work List,standard,PhenX Toolkit
+sp. KITNT-3,[Bacillus] sp. KITNT-3,remove text in grouping syms,NCBI
+50 Or 47 MCQ,47 Or 50 MCQ,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. DB682010,Bacillus sp. DB68(2010),remove grouping syms,NCBI
+Agromyces cerinus subsp. nitratus,Agromyces cerinus,user rep,(Derived) Bacteria Root
+AddictionSeverity Attempt Suicide prior Month,AddictionSeverity Attempt Suicide Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 530PM,2DaysBeforeYesterday ActivityNumber 530PM Other,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 1100pm,2DaysBeforeYesterday ActivityNumber 1100PM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber1100PM Work List,2DaysBeforeYesterday ActivityNumber 1100PM Work List,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1130PM,2DaysBeforeYesterday ActivityNumber 1130PM,standard,PhenX Toolkit
+siraeum CAG:80,[Eubacterium] siraeum CAG:80,remove text in grouping syms,NCBI
+Upset And Anxious LSD,Anxious And Upset LSD,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. DU72010,Bacillus sp. DU7(2010),remove grouping syms,NCBI
+Allohahella antarctica,Allohahella,user rep,(Derived) Bacteria Root
+AddictionSeverity Incarcerated prior Month,AddictionSeverity Incarcerated Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 800PM,2DaysBeforeYesterday ActivityNumber 800PM Other,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 1200PM other,2DaysBeforeYesterday ActivityNumber 1200PM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 1230PMOther,2DaysBeforeYesterday ActivityNumber 1230PM Other,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 130PM Work List,2DaysBeforeYesterday ActivityNumber 130PM Work List,standard,PhenX Toolkit
+felis,[Haemophilus] felis,remove text in grouping syms,NCBI
+Tense Or Anxious Stimulants,Anxious Or Tense Stimulants,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. G12015c,Bacillus sp. G1(2015c),remove grouping syms,NCBI
+Alpinimonas psychrophila,Alpinimonas,user rep,(Derived) Bacteria Root
+AddictionSeverity Martial sts,AddictionSeverity Martial Status,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 830PM,2DaysBeforeYesterday ActivityNumber 830PM Other,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 300PM Work List,2DaysBeforeYesterday ActivityNumber 300PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 430PM,2DaysBeforeYesterday ActivityNumber 430PM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 500PM,2DaysBeforeYesterday ActivityNumber 500PM,standard,PhenX Toolkit
+dacunhae ATCC 21192,[Pseudomonas] dacunhae ATCC 21192,remove text in grouping syms,NCBI
+Help For Asked,Asked For Help,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. J212010,Bacillus sp. J21(2010),remove grouping syms,NCBI
+Alteribacter lacisalsi,Alteribacter,user rep,(Derived) Bacteria Root
+AddictionSeverity Martial sts Length,AddictionSeverity Martial Status Length,replace keywords,PhenX Toolkit
+30Day Cocaine Using Getting,30Day Cocaine Using Getting Over,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 630pm Work list,2DaysBeforeYesterday ActivityNumber 630PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber700PMWork List,2DaysBeforeYesterday ActivityNumber 700PM Work List,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 730AM,2DaysBeforeYesterday ActivityNumber 730AM,standard,PhenX Toolkit
+sp. NT N53,[Salibacillus] sp. NT N53,remove text in grouping syms,NCBI
+Autoimmune Diseases SLE Or Lupus,Autoimmune Diseases Lupus Or SLE,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. M_Sw_HS_04/11_11_21,Bacillus sp. M_Sw_HS_04/11_11_2(1),remove grouping syms,NCBI
+Altererythrobacter sp. SALINAS58,Alteripontixanthobacter muriae,user rep,NCBI
+AddictionSeverity Outpatient prior Month,AddictionSeverity Outpatient Past Month,replace keywords,PhenX Toolkit
+30Day Opiates Using Getting,30Day Opiates Using Getting Over,remove stop words,PhenX Toolkit
+2daysbeforeyesterday activitynumb 830am,2DaysBeforeYesterday ActivityNumber 830AM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber830PM Work List,2DaysBeforeYesterday ActivityNumber 830PM Work List,remove punctuation,PhenX Toolkit

alcohol_75_bacteria_25/train.csv

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d3cd704f7e7e08eaa9ae0950b70b2f63427e6e9abc46fcffc533f3ca1f3de907
+size 36592279

alcohol_75_bacteria_25/valid.csv

@@ -0,0 +1,201 @@
+representation,harmonization_standard,variation_type,source_terminology
+78 80 MCQ,78 Or 80 MCQ,remove stop words,PhenX Toolkit
+action Excited Marijuana,Act Excited Marijuana,replace keywords,PhenX Toolkit
+50 Or 27 MCQ,27 Or 50 MCQ,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Martial sts Satisified,AddictionSeverity Martial Status Satisified,replace keywords,PhenX Toolkit
+2daysbeforeyesterday activitynumb 200PM,2DaysBeforeYesterday ActivityNumber 200PM,remove suffix,PhenX Toolkit
+Measurement For Arm,Arm For Measurement,swap words around conjunctions,PhenX Toolkit
+act Or Postural Tremor RUE,Action Or Postural Tremor RUE,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 800AM Other,2DaysBeforeYesterday ActivityNumber 800AM Other,standard,PhenX Toolkit
+AddictionSeverity Physical Abuse prior Month,AddictionSeverity Physical Abuse Past Month,replace keywords,PhenX Toolkit
+12 MonthHeroinUse,12 Month Heroin Use,remove punctuation,PhenX Toolkit
+80 Or 54 MCQ,54 Or 80 MCQ,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Prescribed Medication prior Month,AddictionSeverity Prescribed Medication Past Month,replace keywords,PhenX Toolkit
+Anabaena sp. LMECYA 182,Anabaena sp. LMECYA,user rep,(Derived) Bacteria Root
+Activity concentration,Activity Level,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 900PM Work List,2DaysBeforeYesterday ActivityNumber 900PM Work List,standard,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 800PM WorkList,2DaysBeforeYesterday ActivityNumber 800PM Work List,remove punctuation,PhenX Toolkit
+unclassified Gordonia,unclassified Gordonia (in: high G+C Gram-positive bacteria),remove text in grouping syms,NCBI
+2DaysBeforeYesterday activitynumb 400PM,2DaysBeforeYesterday ActivityNumber 400PM,remove suffix,PhenX Toolkit
+2000Hz Threshold Right Ear,2000Hz Threshold Right Ear,standard,PhenX Toolkit
+Vitellibacter sp. 2-4,Aequorivita sp. 2-4,user rep,NCBI
+Bacillus sp. B122012b,Bacillus sp. B12(2012b),remove grouping syms,NCBI
+20 55 MCQ,20 Or 55 MCQ,remove stop words,PhenX Toolkit
+Bacillus sp. C362013,Bacillus sp. C36(2013),remove grouping syms,NCBI
+Agrococcus sp. SC8s5,Agrococcus sp.,user rep,(Derived) Bacteria Root
+uncultured bacterium,uncultured bacterium (gcode 4),remove text in grouping syms,NCBI
+act Or Postural Tremor LUE,Action Or Postural Tremor LUE,replace keywords,PhenX Toolkit
+Bacillaceae bacterium 2003_NPK8,Bacillaceae bacterium 2003_NPK(8),remove grouping syms,NCBI
+Arthrobacter sp. bA402011,Arthrobacter sp. bA40(2011),remove grouping syms,NCBI
+Alkalibacterium psychralcaliphilus,Alkalibacterium psychrotolerans,user rep,NCBI
+Bacillus sp. B132011,Bacillus sp. B13(2011),remove grouping syms,NCBI
+'Dimocarpus longan' witches'-broom phytoplasma,'Dimocarpus longan' witches'-broom phytoplasma,standard,NCBI
+'Santalumalbum'phytoplasma,'Santalum album' phytoplasma,remove punctuation,NCBI
+12 Month MDMA Use,12 Month MDMA Use,standard,PhenX Toolkit
+75 Or 55 MCQ,55 Or 75 MCQ,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Living Arrangements alc Problems,AddictionSeverity Living Arrangements Alcohol Problems,replace keywords,PhenX Toolkit
+2daysbeforeyesterday activitynumb 1100am,2DaysBeforeYesterday ActivityNumber 1100AM,remove suffix,PhenX Toolkit
+Ability Make GrownUp Sentences,Ability To Make GrownUp Sentences,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber300PM,2DaysBeforeYesterday ActivityNumber 300PM,remove punctuation,PhenX Toolkit
+Bacillus sp. DB052010,Bacillus sp. DB05(2010),remove grouping syms,NCBI
+Bacillaceae bacterium 1944_FYM2,Bacillaceae bacterium 1944_FYM(2),remove grouping syms,NCBI
+30Day Sedatives Using Getting,30Day Sedatives Using Getting Over,remove stop words,PhenX Toolkit
+Geitlerinema exile GSP166-2,Anagnostidinema exile GSP166-2,user rep,NCBI
+PACC 8140,[Phormidesmis molle] PACC 8140,remove text in grouping syms,NCBI
+action Out Dreams HowOften Years,Act Out Dreams HowOften Years,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1230PM Work List,2DaysBeforeYesterday ActivityNumber 1230PM Work List,standard,PhenX Toolkit
+Conned Money For People,Conned People For Money,swap words around conjunctions,PhenX Toolkit
+piliforme,[Clostridium] piliforme,remove text in grouping syms,NCBI
+'Spartium junceum' phytoplasma SI04-S4,'Spartium junceum' phytoplasma SI04-S4,standard,NCBI
+Ability Understand Others Say,Ability Understand What Others Say,remove stop words,PhenX Toolkit
+AddictionSeverity alc AnyUse Lifetime,AddictionSeverity Alcohol AnyUse Lifetime,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1200PM,2DaysBeforeYesterday ActivityNumber 1200PM,standard,PhenX Toolkit
+Anaerococcus lactolyticus strain CC31C,Anaerococcus lactolyticus CC31C,user rep,NCBI
+Acinetobacter sp. paid-155,Acinetobacter sp. P-155,replace keywords,NCBI
+AddictionSeverity Drug Problems prior Month,AddictionSeverity Drug Problems Past Month,replace keywords,PhenX Toolkit
+Aliidiomarina sp. IM 1326,Aliidiomarina halalkaliphila,user rep,NCBI
+2000Hz Left Ear CNO,2000Hz Left Ear CNO,standard,PhenX Toolkit
+Bacillus sp. B62022,Bacillus sp. B6(2022),remove grouping syms,NCBI
+2DaysBeforeYesterday ActivityNumber 1030AM Other,2DaysBeforeYesterday ActivityNumber 1030AM Other,standard,PhenX Toolkit
+Bacillus sp. DB1602010,Bacillus sp. DB160(2010),remove grouping syms,NCBI
+2daysbeforeyesterday activitynumb 100pm Work List,2DaysBeforeYesterday ActivityNumber 100PM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber800AM,2DaysBeforeYesterday ActivityNumber 800AM,remove punctuation,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber1030AM,2DaysBeforeYesterday ActivityNumber 1030AM,remove punctuation,PhenX Toolkit
+Aeromonas sp. Ae712011,Aeromonas sp. Ae71(2011),remove grouping syms,NCBI
+25 Or 14 MCQ,14 Or 25 MCQ,swap words around conjunctions,PhenX Toolkit
+12 Month amphetamin use,12 Month Amphetamines Use,remove suffix,PhenX Toolkit
+Ability Start Conversation Children,Ability Start Conversation Other Children,remove stop words,PhenX Toolkit
+action Without Thinking When Happy,Act Without Thinking When Happy,replace keywords,PhenX Toolkit
+Anaerohalosphaera lusitana,Anaerohalosphaera,user rep,(Derived) Bacteria Root
+2DaysBeforeYesterday ActivityNumber 1000AM Work List,2DaysBeforeYesterday ActivityNumber 1000AM Work List,standard,PhenX Toolkit
+2daysbeforeyesterday activitynumb 230pm Other,2DaysBeforeYesterday ActivityNumber 230PM Other,remove suffix,PhenX Toolkit
+action Without Thinking When Upset,Act Without Thinking When Upset,replace keywords,PhenX Toolkit
+Ability Get Message Across,Ability To Get Message Across,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 700PM,2DaysBeforeYesterday ActivityNumber 700PM,standard,PhenX Toolkit
+Actinobacillus cf. equuli,Actinobacillus equuli subsp. haemolyticus,user rep,NCBI
+AddictionSeverity Detox alc,AddictionSeverity Detox Alcohol,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber1130PM Other,2DaysBeforeYesterday ActivityNumber 1130PM Other,remove punctuation,PhenX Toolkit
+'Trema laevigata' witch'-broom phytoplasma,'Trema laevigata' witches'-broom phytoplasma,remove suffix,NCBI
+Blames Mistakes For Others,Blames Others For Mistakes,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. A32013,Bacillus sp. A3(2013),remove grouping syms,NCBI
+AIDS Date Onset Month,AIDS Date Of Onset Month,remove stop words,PhenX Toolkit
+30 Or 11 MCQ,11 Or 30 MCQ,swap words around conjunctions,PhenX Toolkit
+Vitellibacter sp. UBA3599,Aequorivita sp. UBA3599,user rep,NCBI
+12 Month Ketamine Use,12 Month Ketamine Use,standard,PhenX Toolkit
+Cocaine Need Effect For More,Cocaine Need More For Effect,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity Spent Alcohol,AddictionSeverity Spent On Alcohol,remove stop words,PhenX Toolkit
+Oscillatoriaceae cyanobacterium sp. BLCCM62,Affixifilum floridanum BLCC-M62,user rep,NCBI
+2DaysBeforeYesterday ActivityNumber700AM,2DaysBeforeYesterday ActivityNumber 700AM,remove punctuation,PhenX Toolkit
+12 Month AndroUse,12 Month Andro Use,remove punctuation,PhenX Toolkit
+AddictionSeverity SeriousProblems CloseFriends prior Month,AddictionSeverity SeriousProblems CloseFriends Past Month,replace keywords,PhenX Toolkit
+30 Day Hallucinogen Use,30 Day Other Hallucinogen Use,remove stop words,PhenX Toolkit
+Aeromonas sp. Ae242011,Aeromonas sp. Ae24(2011),remove grouping syms,NCBI
+candidate division OP8 clone OPS88,Aminicenantes bacterium clone OPS88,user rep,NCBI
+Agromyces sp. IFO16238,Agromyces bracchium,user rep,NCBI
+action Without Thinking Make Worse,Act Without Thinking Make Worse,replace keywords,PhenX Toolkit
+Candidatus Cyrtobacter sp.,Candidatus Cyrtobacter sp. (ex Euplotes eurystomus),remove text in grouping syms,NCBI
+2DaysBeforeYesterday ActivityNumber 930PM Other,2DaysBeforeYesterday ActivityNumber 930PM Other,standard,PhenX Toolkit
+Able Pace Myself,Able To Pace Myself,remove stop words,PhenX Toolkit
+12 Month Narcotic Use,12 Month Other Narcotic Use,remove stop words,PhenX Toolkit
+'Zinniaelegans' phyllody phytoplasma,'Zinnia elegans' phyllody phytoplasma,remove punctuation,NCBI
+2daysbeforeyesterday activitynumb 1200PM work List,2DaysBeforeYesterday ActivityNumber 1200PM Work List,remove suffix,PhenX Toolkit
+'Areca catechu' palm yellow leaf disease phytoplasma,'Areca catechu',user rep,(Derived) Bacteria Root
+Acinetobacter baumannii MRSN 7341,Acinetobacter baumannii MRSN,user rep,(Derived) Bacteria Root
+AddictionSeverity Incarcerated Last chg,AddictionSeverity Incarcerated Last Charge,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 330PMOther,2DaysBeforeYesterday ActivityNumber 330PM Other,remove punctuation,PhenX Toolkit
+Alcaligenes sp. HO-1,Alcaligenes ammonioxydans,user rep,NCBI
+2DaysBeforeYesterday activitynumb 330pm,2DaysBeforeYesterday ActivityNumber 330PM,remove suffix,PhenX Toolkit
+Bacillus sp. 027-2.2-LH-H16-04,Bacillus sp. 027-2.2-LH-H16(s)-04,remove unit,NCBI
+20drink one day firsttim age,20Drinks One Day FirstTime Age,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 1130am Work List,2DaysBeforeYesterday ActivityNumber 1130AM Work List,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 330PM Work List,2DaysBeforeYesterday ActivityNumber 330PM Work List,standard,PhenX Toolkit
+AddictionSeverity PaidDays prior Month,AddictionSeverity PaidDays Past Month,replace keywords,PhenX Toolkit
+Acidovorax sp. Pd-E-e-D-4(2),Acidovorax sp. Pd-E-(l)-e-D-4(2),remove unit,NCBI
+AddictionSeverity SeriousProblems Neighbors prior Month,AddictionSeverity SeriousProblems Neighbors Past Month,replace keywords,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber 400PM Other,2DaysBeforeYesterday ActivityNumber 400PM Other,remove punctuation,PhenX Toolkit
+30Day OtherDrugs Using Getting,30Day OtherDrugs Using Getting Over,remove stop words,PhenX Toolkit
+Money For Begged,Begged For Money,swap words around conjunctions,PhenX Toolkit
+12 Month Ritalin Use,12 Month Ritalin Use,standard,PhenX Toolkit
+12 Month Heroin without needl Use,12 Month Heroin Without Needle Use,remove suffix,PhenX Toolkit
+Child Care Quality Younger Anyone Baby For Caring,Child Care Quality Younger Anyone Caring For Baby,swap words around conjunctions,PhenX Toolkit
+12 Month Adderall Use,12 Month Adderall Use,standard,PhenX Toolkit
+Aeromonas sp. B12011,Aeromonas sp. B1(2011),remove grouping syms,NCBI
+Bacillus sp. AM42012,Bacillus sp. AM4(2012),remove grouping syms,NCBI
+Cancer Of Rectum Or Colon,Cancer Of Colon Or Rectum,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. CA2010,Bacillus sp. CA(2010),remove grouping syms,NCBI
+20Week Weight Lbs,20Week Weight Before Lbs,remove stop words,PhenX Toolkit
+Acidovorax sp. GBBC 3334,Acidovorax sp. GBBC,user rep,(Derived) Bacteria Root
+2daysbeforeyesterday activitynumb 900am Other,2DaysBeforeYesterday ActivityNumber 900AM Other,remove suffix,PhenX Toolkit
+FEF90 Or Blank4,Blank4 Or FEF90,swap words around conjunctions,PhenX Toolkit
+2000HzThreshold Left Ear,2000Hz Threshold Left Ear,remove punctuation,PhenX Toolkit
+80 Or 33 MCQ,33 Or 80 MCQ,swap words around conjunctions,PhenX Toolkit
+2daysbeforeyesterday activitynumb 730pm,2DaysBeforeYesterday ActivityNumber 730PM,remove suffix,PhenX Toolkit
+endosymbiont of Exorista sorbillans,endosymbiont of Exorista sorbillans (Channapatna pop.),remove text in grouping syms,NCBI
+AddictionSeverity alc ToIntoxication Lifetime,AddictionSeverity Alcohol ToIntoxication Lifetime,replace keywords,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 600PM Work List,2DaysBeforeYesterday ActivityNumber 600PM Work List,standard,PhenX Toolkit
+30 Day Inhaled Gas Spray Use,30 Day Inhaled Gas Or Spray Use,remove stop words,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 300PM Other,2DaysBeforeYesterday ActivityNumber 300PM Other,standard,PhenX Toolkit
+Acidovorax sp. p42011,Acidovorax sp. p4(2011),remove grouping syms,NCBI
+2DaysBeforeYesterdayActivityNumber1100AM Other,2DaysBeforeYesterday ActivityNumber 1100AM Other,remove punctuation,PhenX Toolkit
+12 month quaalud use,12 Month Quaalude Use,remove suffix,PhenX Toolkit
+Amazonocrinis malviyae 19C-PS,Amazonocrinis,user rep,(Derived) Bacteria Root
+Bacillus sp. F92011,Bacillus sp. F9(2011),remove grouping syms,NCBI
+2DaysBeforeYesterday ActivityNumber 900AM,2DaysBeforeYesterday ActivityNumber 900AM,standard,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber900PM,2DaysBeforeYesterday ActivityNumber 900PM,remove punctuation,PhenX Toolkit
+Aeromonas sp. H102011,Aeromonas sp. H10(2011),remove grouping syms,NCBI
+20week weight gain Lbs,20Week Weight Gained Lbs,remove suffix,PhenX Toolkit
+28 30 MCQ,28 Or 30 MCQ,remove stop words,PhenX Toolkit
+'ageratum conyzoid' phytoplasma,'Ageratum conyzoide' phytoplasma,remove suffix,NCBI
+AddictionSeverity Depression prior Month,AddictionSeverity Depression Past Month,replace keywords,PhenX Toolkit
+85 Or 69 MCQ,69 Or 85 MCQ,swap words around conjunctions,PhenX Toolkit
+75 Or 67 MCQ,67 Or 75 MCQ,swap words around conjunctions,PhenX Toolkit
+2daysbeforeyesterday activitynumb 800AM Work List,2DaysBeforeYesterday ActivityNumber 800AM Work List,remove suffix,PhenX Toolkit
+Anaerococcus pacaensis 9403502,Anaerococcus pacaensis,user rep,(Derived) Bacteria Root
+2000HzRestestThresholdLeftEar,2000HzRestest Threshold Left Ear,remove punctuation,PhenX Toolkit
+'Chrysanthemumcoronarium','Chrysanthemum coronarium',remove punctuation,(Derived) Bacteria Root
+Acinetobacter sp. WZ22011,Acinetobacter sp. WZ2(2011),remove grouping syms,NCBI
+Actinomadura sp. OS3-83,Actinomadura terrae,user rep,NCBI
+Cigarettes Boredom For Good,Cigarettes Good For Boredom,swap words around conjunctions,PhenX Toolkit
+Fainting Or Blackouts,Blackouts Or Fainting,swap words around conjunctions,PhenX Toolkit
+'spinacia oleracea' phyllodi phytoplasma,'Spinacia oleracea' phyllody phytoplasma,remove suffix,NCBI
+12 MonthSteroidUse,12 Month Steroid Use,remove punctuation,PhenX Toolkit
+Activities Community BoysGirls Clubs,Activities In Community BoysGirls Clubs,remove stop words,PhenX Toolkit
+AddictionSeverity EmploymentProblems prior Month,AddictionSeverity EmploymentProblems Past Month,replace keywords,PhenX Toolkit
+Actigraph Returned,Actigraph Not Returned,remove stop words,PhenX Toolkit
+Activities Community Service Clubs,Activities In Community Service Clubs,remove stop words,PhenX Toolkit
+12MonthOxyContinUse,12 Month OxyContin Use,remove punctuation,PhenX Toolkit
+12MonthLSD Use,12 Month LSD Use,remove punctuation,PhenX Toolkit
+Adults Gotten High Or Drunk,Adults Gotten Drunk Or High,swap words around conjunctions,PhenX Toolkit
+Actinomadura longicatena,Actinocorallia longicatena,user rep,NCBI
+Bacillus sp. H12015,Bacillus sp. H1(2015),remove grouping syms,NCBI
+Afipia sp. PVC0.1X,Afipia sp. PVC(0.1)X,remove grouping syms,NCBI
+55 Or 40 MCQ,40 Or 55 MCQ,swap words around conjunctions,PhenX Toolkit
+2daysbeforeyesterday activitynumb 1000am Other,2DaysBeforeYesterday ActivityNumber 1000AM Other,remove suffix,PhenX Toolkit
+35 Or 24 MCQ,24 Or 35 MCQ,swap words around conjunctions,PhenX Toolkit
+60 Or 49 MCQ,49 Or 60 MCQ,swap words around conjunctions,PhenX Toolkit
+2daysbeforeyesterday activitynumb 630pm Other,2DaysBeforeYesterday ActivityNumber 630PM Other,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday activitynumb 930am,2DaysBeforeYesterday ActivityNumber 930AM,remove suffix,PhenX Toolkit
+2DaysBeforeYesterdayActivityNumber200PMOther,2DaysBeforeYesterday ActivityNumber 200PM Other,remove punctuation,PhenX Toolkit
+12 Month Cocaine Use,12 Month Cocaine Use,standard,PhenX Toolkit
+Amphritea balenae,Amphritea,user rep,(Derived) Bacteria Root
+2DaysBeforeYesterday ActivityNumber930AM Work List,2DaysBeforeYesterday ActivityNumber 930AM Work List,remove punctuation,PhenX Toolkit
+Bacillus sp. By104Ydz-dh,Bacillus sp. By104(A)Ydz-dh,remove text in grouping syms,NCBI
+30 Day Cocaine Use,30 Day Other Cocaine Use,remove stop words,PhenX Toolkit
+Aminobacter sp. STM 4644,Aminobacter anthyllidis,user rep,NCBI
+2DaysBeforeYesterday ActivityNumber 230PM,2DaysBeforeYesterday ActivityNumber 230PM,standard,PhenX Toolkit
+Able Drink Stimulants,Able To Drink More Stimulants,remove stop words,PhenX Toolkit
+Cigarette Would Taste Good,A Cigarette Would Taste Good,remove stop words,PhenX Toolkit
+85 Or 80 MCQ,80 Or 85 MCQ,swap words around conjunctions,PhenX Toolkit
+Bacillus sp. AS2 2008,Bacillus sp. AS2 (2008),remove grouping syms,NCBI
+30Day Stimulants Using Getting,30Day Stimulants Using Getting Over,remove stop words,PhenX Toolkit
+uncultured bacterium L83J,uncultured bacterium (human infant) L83J,remove text in grouping syms,NCBI
+2DaysBeforeYesterday ActivityNumber1230PM,2DaysBeforeYesterday ActivityNumber 1230PM,remove punctuation,PhenX Toolkit
+Adherence Medication Often Forget Take Medicine Than Once Day,Adherence Medication Often Forget Take Medicine More Than Once Day,remove stop words,PhenX Toolkit
+Lactobacillus sp. L329D02,Lactobacillus sp. L329(LBF2)D02,remove text in grouping syms,NCBI
+Bacillus sp. GG62015,Bacillus sp. GG6(2015),remove grouping syms,NCBI
+20week Weight Gained code,20Week Weight Gained Coded,remove suffix,PhenX Toolkit
+2DaysBeforeYesterday ActivityNumber 1130AM,2DaysBeforeYesterday ActivityNumber 1130AM,standard,PhenX Toolkit
+'Eleusine indica' phytoplasma,'Eleusine indica',user rep,(Derived) Bacteria Root
+Bacillus sp. A12008,Bacillus sp. A1(2008),remove grouping syms,NCBI
+Clear Grades For Expectations,Clear Expectations For Grades,swap words around conjunctions,PhenX Toolkit
+AddictionSeverity alc Treatment,AddictionSeverity Alcohol Treatment,replace keywords,PhenX Toolkit