diff --git a/README.md b/README.md index 85504ae61ab7c4365a7f5582d6625a3e267f7c9d..de79395ac28550b596d8dd0bee77256651baf9c5 100644 --- a/README.md +++ b/README.md @@ -57,12 +57,14 @@ Only `enterococcus_clean_v2_segments` contains the nucleotide segment sequence c | total canonical rows | 910900 | | host rows flagged by plasmid overlap | 27417 | | current clean-training eligible rows | 883483 | +| unique source sequence IDs | 5133 | | selected Enterococcus clean-v2 NR plasmids | 2519 | | host assemblies with usable non-plasmid contigs | 1497 | ## Segment Flags - `segment_id`: unique integer primary key, contiguous from `0`. +- `sequence_id`: source-sequence grouping ID, contiguous from `0`; segments from the same plasmid or host source contig share one value. - `labels`: `1` for plasmid segments, `0` for host segments. - `training_eligible_current_clean`: current recommended training filter. - `filtered_by_plasmid`: host segment has a likely plasmid-overlap minimap2 hit. @@ -91,3 +93,4 @@ flagged_hosts = segments.filter(lambda row: row["source_type"] == "host" and row Detailed JSON reports are stored under `reports/`. + diff --git a/data/enterococcus_clean_v2_host_assemblies/train-00000.parquet b/data/enterococcus_clean_v2_host_assemblies/train-00000.parquet new file mode 100644 index 0000000000000000000000000000000000000000..041db4c25714fe562f9341b4a82f83878da6ad5d --- /dev/null +++ b/data/enterococcus_clean_v2_host_assemblies/train-00000.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:75351d2ddb02d031dda145f61e279bae42ec264ff866078ca26636965859fdb8 +size 60839 diff --git a/data/enterococcus_clean_v2_host_contigs/train-00000.parquet b/data/enterococcus_clean_v2_host_contigs/train-00000.parquet new file mode 100644 index 0000000000000000000000000000000000000000..760878a02bbc93cfb0d69607b469b10180cac964 --- /dev/null +++ b/data/enterococcus_clean_v2_host_contigs/train-00000.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:08ebe8621c90035ddc04670c439f6640e8fd2a20b71500bd075588850d238087 +size 108719 diff --git a/data/enterococcus_clean_v2_plasmid_to_assembly_links/train-00000.parquet b/data/enterococcus_clean_v2_plasmid_to_assembly_links/train-00000.parquet new file mode 100644 index 0000000000000000000000000000000000000000..7cb746bbffd78d1fbb653d213178af84535dd466 --- /dev/null +++ b/data/enterococcus_clean_v2_plasmid_to_assembly_links/train-00000.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:252192fc231d8194b61c7e556294be1357552d393e82992be12fd3d79a15f5d2 +size 333285 diff --git a/data/enterococcus_clean_v2_plasmids/train-00000.parquet b/data/enterococcus_clean_v2_plasmids/train-00000.parquet new file mode 100644 index 0000000000000000000000000000000000000000..12dc96ca4d12fe77a0456245678a9327e4bb2be3 --- /dev/null +++ b/data/enterococcus_clean_v2_plasmids/train-00000.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:263f4c29acea41676ecb7316addf633b734093ee2594f06aed61074bad8eb2c8 +size 235338 diff --git a/data/enterococcus_clean_v2_segments/train-00000.parquet b/data/enterococcus_clean_v2_segments/train-00000.parquet new file mode 100644 index 0000000000000000000000000000000000000000..1164be65ee89b2690de2a6203fd9ac840c96bffc --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00000.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:db672fce134d4ab4ae19599ce2e934658182a4e9c4bb81d949ebbaf630c1f451 +size 109564146 diff --git a/data/enterococcus_clean_v2_segments/train-00001.parquet b/data/enterococcus_clean_v2_segments/train-00001.parquet new file mode 100644 index 0000000000000000000000000000000000000000..5649f3f4e053dceacf407d88b027de0eb578166e --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00001.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:214b280e9cd159dfb2f7077dd63a105fb9fd772d1b15bc04ed7261022ca97f05 +size 90006778 diff --git a/data/enterococcus_clean_v2_segments/train-00002.parquet b/data/enterococcus_clean_v2_segments/train-00002.parquet new file mode 100644 index 0000000000000000000000000000000000000000..0c8d270706fefdf26af4b086f80fcc27aafeddfa --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00002.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:71e3734db5c4df070f5d8b1292d80da533dd30ee26fe3698f99e1f03ea2b9922 +size 2373378 diff --git a/data/enterococcus_clean_v2_segments/train-00003.parquet b/data/enterococcus_clean_v2_segments/train-00003.parquet new file mode 100644 index 0000000000000000000000000000000000000000..2e516c15354427aa19e6ff8ba248c926b6dfab39 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00003.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0daa6dad3b080429a1af02d8aac53951f7d28a4420ea651ced620087a5274da9 +size 1213757 diff --git a/data/enterococcus_clean_v2_segments/train-00004.parquet b/data/enterococcus_clean_v2_segments/train-00004.parquet new file mode 100644 index 0000000000000000000000000000000000000000..af4e40a197ddfdd2df89042ea111a0d82d7867e3 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00004.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:696733b6d0d7c2fc1ea011047026902950e36cae60a9115e4db59ec8708a5bcb +size 1416889 diff --git a/data/enterococcus_clean_v2_segments/train-00005.parquet b/data/enterococcus_clean_v2_segments/train-00005.parquet new file mode 100644 index 0000000000000000000000000000000000000000..b84d0638eda3f50947edf69498238d5ef33b7683 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00005.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:15bede59844bc38a6ec36e6081b4b0194c94bd5020018803cc1de6ec53b200a7 +size 1204759 diff --git a/data/enterococcus_clean_v2_segments/train-00006.parquet b/data/enterococcus_clean_v2_segments/train-00006.parquet new file mode 100644 index 0000000000000000000000000000000000000000..9eaa7d875a783e82c8d549055138bfc839cd31dd --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00006.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3f213f0504edcb1bc97bbae8f733a5d68b4900f2c85e2f35d0829373b791283c +size 2110091 diff --git a/data/enterococcus_clean_v2_segments/train-00007.parquet b/data/enterococcus_clean_v2_segments/train-00007.parquet new file mode 100644 index 0000000000000000000000000000000000000000..d2a4e80bed22a66222efaa2abd846ce255a33743 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00007.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5ccddfbc5c7a2284994104ea0321056c23a7db9a366e846c1e149e3de6594dcb +size 1218968 diff --git a/data/enterococcus_clean_v2_segments/train-00008.parquet b/data/enterococcus_clean_v2_segments/train-00008.parquet new file mode 100644 index 0000000000000000000000000000000000000000..e8983ab02f604f75208df3338944d93d40429fd5 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00008.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b527f2c49ef3b98258b624f2ded8918f2fd4fa9c515a633631e7d48da813f1af +size 573961 diff --git a/data/enterococcus_clean_v2_segments/train-00009.parquet b/data/enterococcus_clean_v2_segments/train-00009.parquet new file mode 100644 index 0000000000000000000000000000000000000000..db605015077ac1323bf8336468614e6e73daab3f --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00009.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7a9ef8a5e31d927a87412efc78e2d6d22f9d7b7d0aaac7b2dea6239ba76be83e +size 647219 diff --git a/data/enterococcus_clean_v2_segments/train-00010.parquet b/data/enterococcus_clean_v2_segments/train-00010.parquet new file mode 100644 index 0000000000000000000000000000000000000000..29706e67cfe020ae2ef88f59f2b8a62a71892cfd --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00010.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4129ae6a01726295d250dc90d60758de922f1edfe5f52c6900fa892fd884138e +size 564846 diff --git a/data/enterococcus_clean_v2_segments/train-00011.parquet b/data/enterococcus_clean_v2_segments/train-00011.parquet new file mode 100644 index 0000000000000000000000000000000000000000..ea1a863ed27bfdba02ed5f6c3f67f63d23000e43 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00011.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:224321ee408e817fa87058f3bf3f6dc919ec574e294e44fdbaea5e4111b560c2 +size 616671 diff --git a/data/enterococcus_clean_v2_segments/train-00012.parquet b/data/enterococcus_clean_v2_segments/train-00012.parquet new file mode 100644 index 0000000000000000000000000000000000000000..f936d3432c5453b13a5013f003dd273dc07d32bd --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00012.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:51faeba44f24cc7fd457761773195579c20592a1f4b2306f9f0e05ce5c8202e8 +size 3042227 diff --git a/data/enterococcus_clean_v2_segments/train-00013.parquet b/data/enterococcus_clean_v2_segments/train-00013.parquet new file mode 100644 index 0000000000000000000000000000000000000000..f72c42f1a9433acfeeef851cdc4937cfba91c14b --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00013.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:028ab90150af9e0336624aac049f04b312cf861fbd508c77bb19f066fa69a71c +size 3021135 diff --git a/data/enterococcus_clean_v2_segments/train-00014.parquet b/data/enterococcus_clean_v2_segments/train-00014.parquet new file mode 100644 index 0000000000000000000000000000000000000000..cfeeb9dd404b051c23bc0539230a16263ae58357 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00014.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:13c44e6e3a433c6b2f065883efcff4c051402bf07a3c636084c8076b8ad81dd4 +size 2236812 diff --git a/data/enterococcus_clean_v2_segments/train-00015.parquet b/data/enterococcus_clean_v2_segments/train-00015.parquet new file mode 100644 index 0000000000000000000000000000000000000000..10739e5d465d01b2754ceee8a3aa9f4dcfd19248 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00015.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7a6085a8c02d63f9038e423252c25eaeac7d34076ec7f17380336341e49fef95 +size 661402 diff --git a/data/enterococcus_clean_v2_segments/train-00016.parquet b/data/enterococcus_clean_v2_segments/train-00016.parquet new file mode 100644 index 0000000000000000000000000000000000000000..b2768a9e640c13f6afe38eb048a72b10c5f74060 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00016.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:52ca91e70723bdd70e6da288f2690820209246037a76865ab148c1b55e635141 +size 13454178 diff --git a/data/enterococcus_clean_v2_segments/train-00017.parquet b/data/enterococcus_clean_v2_segments/train-00017.parquet new file mode 100644 index 0000000000000000000000000000000000000000..302c3c9f22337998c4d9b7408fcb76e76b68f0a7 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00017.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:630e05beb18632bc6b3e523c4e4ccc9f5649900b4dacded443b736b306172d06 +size 3058203 diff --git a/data/enterococcus_clean_v2_segments/train-00018.parquet b/data/enterococcus_clean_v2_segments/train-00018.parquet new file mode 100644 index 0000000000000000000000000000000000000000..1b4fe5eb7a40f1c87d0e34b7bcbd8e5c57e7bfbf --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00018.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4baecae48632e519ec37c4764914a713a64f9e47e599c936c5a008ca6107ac0d +size 10500639 diff --git a/data/enterococcus_clean_v2_segments/train-00019.parquet b/data/enterococcus_clean_v2_segments/train-00019.parquet new file mode 100644 index 0000000000000000000000000000000000000000..1eda16e1e80d1d065b96c129893f337e6f9f6e46 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00019.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eec3eb7358e85f596406482d112a3c176b9c0f2fa264ae2dff30db8c4424669b +size 12927528 diff --git a/data/enterococcus_clean_v2_segments/train-00020.parquet b/data/enterococcus_clean_v2_segments/train-00020.parquet new file mode 100644 index 0000000000000000000000000000000000000000..f0a1aaf965de7d94cecf56fa67baf00199e29e98 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00020.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e6e2ee69e44b7b008318069891e559320bef9f82e10a48b1e2825d5590dcf835 +size 56781188 diff --git a/data/enterococcus_clean_v2_segments/train-00021.parquet b/data/enterococcus_clean_v2_segments/train-00021.parquet new file mode 100644 index 0000000000000000000000000000000000000000..e6c0c89626c7f4a7746f527852670e8ba99d9d2e --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00021.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cfaf91b460a527a3c50397c4097f2d6ac0e877063fcf26e194de31844e418e21 +size 1696766 diff --git a/data/enterococcus_clean_v2_segments/train-00022.parquet b/data/enterococcus_clean_v2_segments/train-00022.parquet new file mode 100644 index 0000000000000000000000000000000000000000..6414dc330525fda6b1711f86477c5691d0e3fd44 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00022.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d1ad38eaab6a8fe0741623893da483ec60133e0ebc63dc43aa45135bdb1a0a7d +size 3530526 diff --git a/data/enterococcus_clean_v2_segments/train-00023.parquet b/data/enterococcus_clean_v2_segments/train-00023.parquet new file mode 100644 index 0000000000000000000000000000000000000000..07007ce3d7d0301238229f0f46728dfd6d62b086 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00023.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:22b35fa70fb6db15f483ab032ab584acb1958a4a7bd24d734e49d116b3b101df +size 632883 diff --git a/data/enterococcus_clean_v2_segments/train-00024.parquet b/data/enterococcus_clean_v2_segments/train-00024.parquet new file mode 100644 index 0000000000000000000000000000000000000000..ef9e79cced4083328014c440dc177a1a9189d7fe --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00024.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:475afa350c9895206e3865b5103145adbb741bbd3529c4310e9bc6ac9d10967c +size 133497758 diff --git a/data/enterococcus_clean_v2_segments/train-00025.parquet b/data/enterococcus_clean_v2_segments/train-00025.parquet new file mode 100644 index 0000000000000000000000000000000000000000..1aec2ba140a73a7dec8dd31688a1258584a32ea8 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00025.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2e5bcc0a930fb38a7d792c5ec0010a606f4a3054c981bf71b6620d7ccb0ae553 +size 4245360 diff --git a/data/enterococcus_clean_v2_segments/train-00026.parquet b/data/enterococcus_clean_v2_segments/train-00026.parquet new file mode 100644 index 0000000000000000000000000000000000000000..384bc24cfee8376fc06fb705b205b09b8abfd43c --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00026.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2444d4935b8cec8d237234e214e969b913a71d158ff0cf6e7848ccbd25ed7ccb +size 6682085 diff --git a/data/enterococcus_clean_v2_segments/train-00027.parquet b/data/enterococcus_clean_v2_segments/train-00027.parquet new file mode 100644 index 0000000000000000000000000000000000000000..6b6da3770a3603cea7af56bab87747380f396c8e --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00027.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:90235996695e722fc8220db3a49c1173c1982f002de9a2ed055b6e89c2d09406 +size 77571274 diff --git a/data/enterococcus_clean_v2_segments/train-00028.parquet b/data/enterococcus_clean_v2_segments/train-00028.parquet new file mode 100644 index 0000000000000000000000000000000000000000..3909c4ab8a65b6adef75af700ad03e1423eaaf84 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00028.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:57fedcf6e4b6e8c93c2de7359dae428219ff9b59e96783f4a44b76c8b2ff8ab9 +size 5391814 diff --git a/data/enterococcus_clean_v2_segments/train-00029.parquet b/data/enterococcus_clean_v2_segments/train-00029.parquet new file mode 100644 index 0000000000000000000000000000000000000000..f5aab691f8a3e32a106e54508a65e9c9856b5375 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00029.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5009bb369b1c33d36d80e12929b5bfeb426afafc344208b8c0cf4f2812ade0dd +size 5427005 diff --git a/data/enterococcus_clean_v2_segments/train-00030.parquet b/data/enterococcus_clean_v2_segments/train-00030.parquet new file mode 100644 index 0000000000000000000000000000000000000000..17170685707e75b043c48ff41992d4fe571c6f40 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00030.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3dc5a2245b940e4b098b54d66e23b9979ddae9947fc5dfcd14a5bd167f58dd91 +size 504338 diff --git a/data/enterococcus_clean_v2_segments/train-00031.parquet b/data/enterococcus_clean_v2_segments/train-00031.parquet new file mode 100644 index 0000000000000000000000000000000000000000..02cda1c99084e70bc1d6f11c47a4f2ff34dbdaf6 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00031.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0685bcb466bde32ffce35bb69a1c344f04535866e2057cc6470dbb18762e8f0d +size 631439 diff --git a/data/enterococcus_clean_v2_segments/train-00032.parquet b/data/enterococcus_clean_v2_segments/train-00032.parquet new file mode 100644 index 0000000000000000000000000000000000000000..5fb4c1d483659ecc2766fe9913b61104110dd563 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00032.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8cceb9504aa30a509f530186478d1306c8dd8a2b9712a69a293cfc02af1f6487 +size 563100 diff --git a/data/enterococcus_clean_v2_segments/train-00033.parquet b/data/enterococcus_clean_v2_segments/train-00033.parquet new file mode 100644 index 0000000000000000000000000000000000000000..9f816b53b4166c002ff13c16aaf4b74a1ab88983 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00033.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d5be5fb4d48941d4d3728de3255b3c1d81ff0f8ad3eab0fe0a979b6ad5b3e401 +size 3568340 diff --git a/data/enterococcus_clean_v2_segments/train-00034.parquet b/data/enterococcus_clean_v2_segments/train-00034.parquet new file mode 100644 index 0000000000000000000000000000000000000000..b230fbd2c2e25e8eeccb01a9dfa5937e8455f09c --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00034.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a83ba8833bd5d38219176d20d64cdb91c3daeb8a846a03f4a8a5bf9056d81668 +size 703035 diff --git a/data/enterococcus_clean_v2_segments/train-00035.parquet b/data/enterococcus_clean_v2_segments/train-00035.parquet new file mode 100644 index 0000000000000000000000000000000000000000..7227c150ca8e4a936ec1d5ba283f71ba2dae565c --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00035.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fb2ba25774130231b4351b126d41c8569da16bfb38542b8cf6818acef12d8daa +size 12105591 diff --git a/data/enterococcus_clean_v2_segments/train-00036.parquet b/data/enterococcus_clean_v2_segments/train-00036.parquet new file mode 100644 index 0000000000000000000000000000000000000000..f554b2cb8717ace580fb4a51ff77bab9568fd834 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00036.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:28b4b6f52bf3eda395194091084b1127a2de36d0237cab76da12ee087a4bb2fd +size 1197983 diff --git a/data/enterococcus_clean_v2_segments/train-00037.parquet b/data/enterococcus_clean_v2_segments/train-00037.parquet new file mode 100644 index 0000000000000000000000000000000000000000..81ef67cb4af843037dddc6ebd4c43cc8cc265ac2 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00037.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2f49d1ca5f9e41147fe25761a79e047fe8c8dfe8a76e917dc6a5bbb2bfdafdde +size 2384533 diff --git a/data/enterococcus_clean_v2_segments/train-00038.parquet b/data/enterococcus_clean_v2_segments/train-00038.parquet new file mode 100644 index 0000000000000000000000000000000000000000..170bd8cc6047385322a546521dcd058ba62c2fac --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00038.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1887304487c8ffe8dc0eefd8120f2674984f392ebd85944e20b15c3befa7b645 +size 1856809 diff --git a/data/enterococcus_clean_v2_segments/train-00039.parquet b/data/enterococcus_clean_v2_segments/train-00039.parquet new file mode 100644 index 0000000000000000000000000000000000000000..9f3095bb6eb868e405bcac062cd4d20993e83077 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00039.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0c55a50bc6b155ebd23509ae172546f5afd5bdd7fbda2cdcc524343817d9a9a5 +size 1792647 diff --git a/data/enterococcus_clean_v2_segments/train-00040.parquet b/data/enterococcus_clean_v2_segments/train-00040.parquet new file mode 100644 index 0000000000000000000000000000000000000000..5117d755130cb3c05a9d15298a62ddda5f7889e6 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00040.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:16d99d9f9f209c475ae373668c1219208a5efe488eeb6a1e51d529db48409f13 +size 1188146 diff --git a/data/enterococcus_clean_v2_segments/train-00041.parquet b/data/enterococcus_clean_v2_segments/train-00041.parquet new file mode 100644 index 0000000000000000000000000000000000000000..1eea9aa10c18e47e5015839c85054b98124c352d --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00041.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9ef41e14f5a37facf2139f0d1227e8490ee5e8669ac9500b686e96ae19bdf385 +size 2949785 diff --git a/data/enterococcus_clean_v2_segments/train-00042.parquet b/data/enterococcus_clean_v2_segments/train-00042.parquet new file mode 100644 index 0000000000000000000000000000000000000000..d1071ff4910f9fa2d7d1bc198a80b970b7cbc7e2 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00042.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:72a860d34277adfa44e6322f010da533153a519fe36ea327a156d2d9a900cda1 +size 603182 diff --git a/data/enterococcus_clean_v2_segments/train-00043.parquet b/data/enterococcus_clean_v2_segments/train-00043.parquet new file mode 100644 index 0000000000000000000000000000000000000000..73b492cc797263d5c61e4ad05025b762b9981b76 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00043.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6ebe187a789829a6c78f27612d6a5962854bc0e9d643ddc2fae9d0b41b6b317a +size 8312800 diff --git a/data/enterococcus_clean_v2_segments/train-00044.parquet b/data/enterococcus_clean_v2_segments/train-00044.parquet new file mode 100644 index 0000000000000000000000000000000000000000..39ae35b750cf7f7566c5e47ed0def902cc9ee00d --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00044.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7f279d9eafa7c98a490dbe0d675e1e90398a6b6b10b7d6ba8c8b7ddf6d2f175b +size 1182718 diff --git a/data/enterococcus_clean_v2_segments/train-00045.parquet b/data/enterococcus_clean_v2_segments/train-00045.parquet new file mode 100644 index 0000000000000000000000000000000000000000..1d5242d53c79f92df5e307c49abb3651fd033b9f --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00045.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9ae533c92e101cb41df4c2bb53b7d8460b7df99726fdffaf3f6405f2430d5b67 +size 3675853 diff --git a/data/enterococcus_clean_v2_segments/train-00046.parquet b/data/enterococcus_clean_v2_segments/train-00046.parquet new file mode 100644 index 0000000000000000000000000000000000000000..f57b42fb332564cd243852ba7c1b1ca94dc3848d --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00046.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ab42761f7531c1e143bc4d2e86111e98a2fb961fbaabed2242d94abaf2a79318 +size 623467 diff --git a/data/enterococcus_clean_v2_segments/train-00047.parquet b/data/enterococcus_clean_v2_segments/train-00047.parquet new file mode 100644 index 0000000000000000000000000000000000000000..c4bf8961be8648045cc9d75b978839b0f9209073 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00047.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a071b1d76600c85b6b4130d383563f4c5d17052eea23d542fec93822d4844b6e +size 1433526 diff --git a/data/enterococcus_clean_v2_segments/train-00048.parquet b/data/enterococcus_clean_v2_segments/train-00048.parquet new file mode 100644 index 0000000000000000000000000000000000000000..2d57c62cad3924a002520867d955e809ed7aee67 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00048.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:45c771b60a2b9d4e3d66738444df56430329259826ab0f629a47199ad9389677 +size 2486977 diff --git a/data/enterococcus_clean_v2_segments/train-00049.parquet b/data/enterococcus_clean_v2_segments/train-00049.parquet new file mode 100644 index 0000000000000000000000000000000000000000..4954163ad113b5a1dae66b31a515444bd0cdab77 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00049.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d94cd8624a7636e1116fd27bce224213565538b6a58cbf5b5e507aae21719b8b +size 1816460 diff --git a/data/enterococcus_clean_v2_segments/train-00050.parquet b/data/enterococcus_clean_v2_segments/train-00050.parquet new file mode 100644 index 0000000000000000000000000000000000000000..bcba19233b7fc6a8a4f1e19352b3f913c999763d --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00050.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:67fdf58492182cf831dfcfd5890839a9acedd1d6ab8773705e10ecfe3ed4fd3d +size 6754701 diff --git a/data/enterococcus_clean_v2_segments/train-00051.parquet b/data/enterococcus_clean_v2_segments/train-00051.parquet new file mode 100644 index 0000000000000000000000000000000000000000..abf7dc563f98c1efe302aff7f28cd9b3b08f94de --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00051.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b9af1739676f677e4091e12234858dbb9d1d4199645c78a7571beff77dadbb16 +size 4003784 diff --git a/data/enterococcus_clean_v2_segments/train-00052.parquet b/data/enterococcus_clean_v2_segments/train-00052.parquet new file mode 100644 index 0000000000000000000000000000000000000000..97aea5dd133c2e57c179411acbe4f0b7aebdc15b --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00052.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ee2862ead66462bf250f6e645bb91c28343c9dcbe95d5249bf08d4f11aa29201 +size 5918861 diff --git a/data/enterococcus_clean_v2_segments/train-00053.parquet b/data/enterococcus_clean_v2_segments/train-00053.parquet new file mode 100644 index 0000000000000000000000000000000000000000..f2225af6f29c430055394ec1d9bb1361bee2e94e --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00053.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d9f529693c97858ee92b9550aa5494bba3c6f880855efc59428f5821c9eff862 +size 1218467 diff --git a/data/enterococcus_clean_v2_segments/train-00054.parquet b/data/enterococcus_clean_v2_segments/train-00054.parquet new file mode 100644 index 0000000000000000000000000000000000000000..83947323608c6a3fcc5570f4d7203f121f19a325 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00054.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:528715a5d2d71c23a869806141586cc088fb9b50321c4439388d5ed287ce35a0 +size 2390602 diff --git a/data/enterococcus_clean_v2_segments/train-00055.parquet b/data/enterococcus_clean_v2_segments/train-00055.parquet new file mode 100644 index 0000000000000000000000000000000000000000..5d5ad2d402e90bfd4f92acb6130afa0e55110a11 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00055.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:375dae80015b66c0bf1a76965e54c1d7e2279f20e130a0f019442644eecad014 +size 567332 diff --git a/data/enterococcus_clean_v2_segments/train-00056.parquet b/data/enterococcus_clean_v2_segments/train-00056.parquet new file mode 100644 index 0000000000000000000000000000000000000000..3adf3a2a5d4e2601e3b75f5871149bc77a0c95d9 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00056.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a0ff2d9d235c1f3da60181d64e1ebc6a9e64c5877b167c55b585456b98c08e15 +size 1441534 diff --git a/data/enterococcus_clean_v2_segments/train-00057.parquet b/data/enterococcus_clean_v2_segments/train-00057.parquet new file mode 100644 index 0000000000000000000000000000000000000000..a326b3b2ef6ad243a95d87b46b5f478382177475 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00057.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7097642d751ee733aaa313ae9ad6344db1c8f9da8bd48dc4d3af12e4231c494a +size 4040153 diff --git a/data/enterococcus_clean_v2_segments/train-00058.parquet b/data/enterococcus_clean_v2_segments/train-00058.parquet new file mode 100644 index 0000000000000000000000000000000000000000..b8d52c000c7a97fc787ad50a33325fb344b57371 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00058.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:63b337ee711586bf9a126eb68ab165709a13b004f1880771fd9b791f336bbfe2 +size 577957 diff --git a/data/enterococcus_clean_v2_segments/train-00059.parquet b/data/enterococcus_clean_v2_segments/train-00059.parquet new file mode 100644 index 0000000000000000000000000000000000000000..6c851460b447b42be5b970f2dffd5d8f6a60c627 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00059.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:749352592c9f09c962f4f42b2e87cceec3ff74f90213bcb86d9640041677bdc8 +size 2317870 diff --git a/data/enterococcus_clean_v2_segments/train-00060.parquet b/data/enterococcus_clean_v2_segments/train-00060.parquet new file mode 100644 index 0000000000000000000000000000000000000000..cdae9714851e671ac191c4960fc0623b2b177616 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00060.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0ba417b96168b6c3252a6c94e1a9dc0f6d458fef7b6ec84a774f1d136f1a6bfd +size 8174971 diff --git a/data/enterococcus_clean_v2_segments/train-00061.parquet b/data/enterococcus_clean_v2_segments/train-00061.parquet new file mode 100644 index 0000000000000000000000000000000000000000..7f8d8c64f9d103fafb1b324c82c7bb27f796eae2 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00061.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8b021830f94b410b2d1dd0febbd0968c66c300c1f8e1a6de26bd7fd26d33575e +size 4963743 diff --git a/data/enterococcus_clean_v2_segments/train-00062.parquet b/data/enterococcus_clean_v2_segments/train-00062.parquet new file mode 100644 index 0000000000000000000000000000000000000000..9596b37c4e41d8f830bac494679da02b8ea0dad3 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00062.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4c019542b48d9a7ff875952a428efac1b19b5e2992c2e4c4f852cdf09bd544e4 +size 7137904 diff --git a/data/enterococcus_clean_v2_segments/train-00063.parquet b/data/enterococcus_clean_v2_segments/train-00063.parquet new file mode 100644 index 0000000000000000000000000000000000000000..403b2087f45e86bd2698e488b085d75c0c75b11b --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00063.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cc62c54db2ce4cbfd557305a7f7f832ff2afa5383fa73f53fc36450ef85599d4 +size 1784114 diff --git a/data/enterococcus_clean_v2_segments/train-00064.parquet b/data/enterococcus_clean_v2_segments/train-00064.parquet new file mode 100644 index 0000000000000000000000000000000000000000..2f51ed8e4523d6de1bf5c1d468ba89ebca05101b --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00064.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d95f601df8d86c80a99278a7aa883d3dc8c59c445c90668130f404958fcf2b4a +size 3213832 diff --git a/data/enterococcus_clean_v2_segments/train-00065.parquet b/data/enterococcus_clean_v2_segments/train-00065.parquet new file mode 100644 index 0000000000000000000000000000000000000000..4f3fbd5791c40323fb6fc0e61dc9a96212c98651 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00065.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b3fb5a5bbc08d845aa73d5feb41c62d26588c1490834e58575f9c50272c1da7a +size 2552029 diff --git a/data/enterococcus_clean_v2_segments/train-00066.parquet b/data/enterococcus_clean_v2_segments/train-00066.parquet new file mode 100644 index 0000000000000000000000000000000000000000..33bbd56b4a53aa6787ff68de04bb849a69bdac12 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00066.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3a39cae5fb19cd30b0782e775a2cab72895afc8236695e3eb8d07290d707bcb4 +size 3515753 diff --git a/data/enterococcus_clean_v2_segments/train-00067.parquet b/data/enterococcus_clean_v2_segments/train-00067.parquet new file mode 100644 index 0000000000000000000000000000000000000000..362ea19d366ffc7e0ebc40b6f39ad676161df241 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00067.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0c5fd986d6a657facfe98dffd457d1e98087d4f7db4a585fd064029e0a19dd6f +size 2816065 diff --git a/data/enterococcus_clean_v2_segments/train-00068.parquet b/data/enterococcus_clean_v2_segments/train-00068.parquet new file mode 100644 index 0000000000000000000000000000000000000000..1bd60630020d35ff8aafdbd085bd4894ea970c18 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00068.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ab2c1bb776cd312a68cf059fefb9072ca9ee1cd68fa7738564f17e351b71658b +size 6314967 diff --git a/data/enterococcus_clean_v2_segments/train-00069.parquet b/data/enterococcus_clean_v2_segments/train-00069.parquet new file mode 100644 index 0000000000000000000000000000000000000000..35893a24f5159d35c1c4f1992e159af8c7e7f140 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00069.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f092699d808f3719dd75cd3c83e2b7ef6efdac0aa6ae57234a3fd29d4421423a +size 1289227 diff --git a/data/enterococcus_clean_v2_segments/train-00070.parquet b/data/enterococcus_clean_v2_segments/train-00070.parquet new file mode 100644 index 0000000000000000000000000000000000000000..9a9bf7fa76c54d0350f49d839d3d6b450065f432 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00070.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5c92254cbefef7e7b80dbe84486cd25e1c268ac4a1edbe41dffc1787545d63c7 +size 5615710 diff --git a/data/enterococcus_clean_v2_segments/train-00071.parquet b/data/enterococcus_clean_v2_segments/train-00071.parquet new file mode 100644 index 0000000000000000000000000000000000000000..1433a10350aa988c40bb194c959e1f0830d01d60 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00071.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3168ce684a020480133a2e59f3694001c31b83d8ce042baebe90702fb6ee4918 +size 2676322 diff --git a/data/enterococcus_clean_v2_segments/train-00072.parquet b/data/enterococcus_clean_v2_segments/train-00072.parquet new file mode 100644 index 0000000000000000000000000000000000000000..15a1ba96c1ce9c4f09a00e5980b364142bb51776 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00072.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9b6a21bef096a54ba584e213f159d7b8a20f16af72114c366375c32a8c7daffd +size 2330704 diff --git a/data/enterococcus_clean_v2_segments/train-00073.parquet b/data/enterococcus_clean_v2_segments/train-00073.parquet new file mode 100644 index 0000000000000000000000000000000000000000..5c70ca942b072881d4dfb945380e802ea50c0191 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00073.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ce3727e7beab96c5c0fb639fb839a742171d22781115cec59a500490346dbe8f +size 12050613 diff --git a/data/enterococcus_clean_v2_segments/train-00074.parquet b/data/enterococcus_clean_v2_segments/train-00074.parquet new file mode 100644 index 0000000000000000000000000000000000000000..af20d42feb55394956ba4ae02a62bfe355e50286 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00074.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:170f9aa509703ab451f49f34033203fdceefbfcddb181976414260cb2813d196 +size 14584739 diff --git a/data/enterococcus_clean_v2_segments/train-00075.parquet b/data/enterococcus_clean_v2_segments/train-00075.parquet new file mode 100644 index 0000000000000000000000000000000000000000..da44e22006382f61b8de04accf756438205a0a16 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00075.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cda2d9820c2c82a640a707fbde28480fefe86102ca6639f21b47bbf22c111d4a +size 1219318 diff --git a/data/enterococcus_clean_v2_segments/train-00076.parquet b/data/enterococcus_clean_v2_segments/train-00076.parquet new file mode 100644 index 0000000000000000000000000000000000000000..d1e1883e3dfcdbbd25495cd25cd1e021067c18c3 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00076.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1dd95b53ecc66aa472ba2527e0f68e9816d03bff23e257e4ddd05bc7ca81c5c4 +size 2323453 diff --git a/data/enterococcus_clean_v2_segments/train-00077.parquet b/data/enterococcus_clean_v2_segments/train-00077.parquet new file mode 100644 index 0000000000000000000000000000000000000000..2fa6d363e38f7e755292ad9ec4ef496ffeaf9bba --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00077.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:516d3cb195b06b926c095f3ce4ab29ae64bd919973070f6afb930e694c0820f5 +size 5843805 diff --git a/data/enterococcus_clean_v2_segments/train-00078.parquet b/data/enterococcus_clean_v2_segments/train-00078.parquet new file mode 100644 index 0000000000000000000000000000000000000000..754f69c6cf59db2b40d2831410e591c4b6fec093 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00078.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3726c59bb9880a1d3c59b76f7b1ff1ddaaffebebbc5db8c897f7d17dc8800313 +size 5560944 diff --git a/data/enterococcus_clean_v2_segments/train-00079.parquet b/data/enterococcus_clean_v2_segments/train-00079.parquet new file mode 100644 index 0000000000000000000000000000000000000000..f2f794681fa1f863270e1100c875d09cd4d95594 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00079.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f222afb57fd6132f35e2730ea77ea0919cbfd0d21d71cd93ad0753351dd0081d +size 1307545 diff --git a/data/enterococcus_clean_v2_segments/train-00080.parquet b/data/enterococcus_clean_v2_segments/train-00080.parquet new file mode 100644 index 0000000000000000000000000000000000000000..a45b4660f9a216beeb29aaafabcb2f93a03c99dd --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00080.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e74b18e15d38b1251158d04277073a56f4d9a8dd7191d75edb9718ad8659ca76 +size 6124214 diff --git a/data/enterococcus_clean_v2_segments/train-00081.parquet b/data/enterococcus_clean_v2_segments/train-00081.parquet new file mode 100644 index 0000000000000000000000000000000000000000..1ef7c08d1a4af62e2c68587483ffba4b0a82460a --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00081.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:79d3ba688b3aad7e49d232d799faac8b89689bb0216033dcea924c259b347ac3 +size 2713892 diff --git a/data/enterococcus_clean_v2_segments/train-00082.parquet b/data/enterococcus_clean_v2_segments/train-00082.parquet new file mode 100644 index 0000000000000000000000000000000000000000..fabdf07e6b41c1a6ce3b65afd69b411afe6772d3 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00082.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fe6a4011a4595dce08f0d0034ff81fc75d34935665702df866f2cdac38c5357e +size 2993226 diff --git a/data/enterococcus_clean_v2_segments/train-00083.parquet b/data/enterococcus_clean_v2_segments/train-00083.parquet new file mode 100644 index 0000000000000000000000000000000000000000..265dd242460756243f0dbcbf0daa7ea51cbfd5c7 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00083.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3d166d0d29c0978edfd7d9c38cae5d03890899aff33e51b3684302608b05c527 +size 4668737 diff --git a/data/enterococcus_clean_v2_segments/train-00084.parquet b/data/enterococcus_clean_v2_segments/train-00084.parquet new file mode 100644 index 0000000000000000000000000000000000000000..e562619e2bc70e10d026e6f0a3b75d674e43381d --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00084.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3fc60387661ee04ba1e480d90bef3a18ab0ca8284e0c1f8adf4d765caf339d0f +size 4750353 diff --git a/data/enterococcus_clean_v2_segments/train-00085.parquet b/data/enterococcus_clean_v2_segments/train-00085.parquet new file mode 100644 index 0000000000000000000000000000000000000000..54e2f6d6c474ffc2b9ff9f6aee1363a7852ac339 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00085.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:efe780700182b31d0b5313010f328e0dae2280e7dd5e87263cf20f622b0f23ac +size 1685952 diff --git a/data/enterococcus_clean_v2_segments/train-00086.parquet b/data/enterococcus_clean_v2_segments/train-00086.parquet new file mode 100644 index 0000000000000000000000000000000000000000..066360336cb50e62cff78e05dc0295e03e783123 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00086.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a6c52b2419341fdcf0b216ea0a688a189d0fef1fdbb872222269e0dad30578a5 +size 3720248 diff --git a/data/enterococcus_clean_v2_segments/train-00087.parquet b/data/enterococcus_clean_v2_segments/train-00087.parquet new file mode 100644 index 0000000000000000000000000000000000000000..ce2c55c380f4e288f5b420c876158f286814b44f --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00087.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1f940c2cde481bfaca0ad48354c16de726fd8257eda5511cffcaf7da7e86d24d +size 5525389 diff --git a/data/enterococcus_clean_v2_segments/train-00088.parquet b/data/enterococcus_clean_v2_segments/train-00088.parquet new file mode 100644 index 0000000000000000000000000000000000000000..672168c87f522914a075c4a6b3f2c52ec2e16b62 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00088.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b00b6aa46d7411a5eab36571c12b2c5e7f6287512e07b4c20e6af2e302bff8ab +size 716665 diff --git a/data/enterococcus_clean_v2_segments/train-00089.parquet b/data/enterococcus_clean_v2_segments/train-00089.parquet new file mode 100644 index 0000000000000000000000000000000000000000..124138988090fc136b565c5e3fe73fc0f31a8a90 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00089.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dd35a2751f31b9ab6e038d06a43dc538067c872574b6cdcc15d527766dfaf54a +size 9155050 diff --git a/data/enterococcus_clean_v2_segments/train-00090.parquet b/data/enterococcus_clean_v2_segments/train-00090.parquet new file mode 100644 index 0000000000000000000000000000000000000000..9b116137e0ef5868466041b3771a0061c7fe0a8d --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00090.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:39f1345d490320e03a20f35e398e989740196551f2a311c9af6ca72e6ff29a6d +size 1934360 diff --git a/data/enterococcus_clean_v2_segments/train-00091.parquet b/data/enterococcus_clean_v2_segments/train-00091.parquet new file mode 100644 index 0000000000000000000000000000000000000000..b52ef9673d09ec2677248380059be4b284b111ca --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00091.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6e11757746d5f497055d30f104b199b10aa19092fdac743e5aea0b27acf54dc7 +size 1204954 diff --git a/data/enterococcus_clean_v2_segments/train-00092.parquet b/data/enterococcus_clean_v2_segments/train-00092.parquet new file mode 100644 index 0000000000000000000000000000000000000000..a6217cccac3c2e4ad347f28c4f5071ba96b8ea0c --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00092.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9acdd8b3080c39be24bd857408493876dc45d38ee9bbc17e1661cb8e79767c46 +size 23882330 diff --git a/data/enterococcus_clean_v2_segments/train-00093.parquet b/data/enterococcus_clean_v2_segments/train-00093.parquet new file mode 100644 index 0000000000000000000000000000000000000000..113a6655b9756d8335f72a7ce7a66ba846809fb2 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00093.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c27e7d1ea005d50013f79f5d3000070f83bfda8a82a3ad674eeace90a0bcffdd +size 2376869 diff --git a/data/enterococcus_clean_v2_segments/train-00094.parquet b/data/enterococcus_clean_v2_segments/train-00094.parquet new file mode 100644 index 0000000000000000000000000000000000000000..87b026e6aad3bd718e2a8270887194d68cd8de7c --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00094.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:64fce531f16a9778c263b45419fd1f7f4f5bc0506e210e740dd7dc6c0979daa8 +size 1202009 diff --git a/data/enterococcus_clean_v2_segments/train-00095.parquet b/data/enterococcus_clean_v2_segments/train-00095.parquet new file mode 100644 index 0000000000000000000000000000000000000000..90dbada304e6cae8d84af59e78f36998b79194f2 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00095.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fb454d10cbf28beca58baf5a75e0d9c6041ec3110cff569f767da8069f27f19f +size 570623 diff --git a/data/enterococcus_clean_v2_segments/train-00096.parquet b/data/enterococcus_clean_v2_segments/train-00096.parquet new file mode 100644 index 0000000000000000000000000000000000000000..1c94d8cd1c0384b61dc2d4f76a61c8b9db70741d --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00096.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9a6e509d9053d1bb78e8be1bda27b4fe504c7c5f560174f4c151f79f5ef3e67d +size 1179116 diff --git a/data/enterococcus_clean_v2_segments/train-00097.parquet b/data/enterococcus_clean_v2_segments/train-00097.parquet new file mode 100644 index 0000000000000000000000000000000000000000..dc32020bfd0de0c8f9af5ffafd0d530103c226d2 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00097.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ba8ae72431c51d01db1f3ddbc4b0e2aa437c71c4a95b0d5725933b7ef366a771 +size 1952427 diff --git a/data/enterococcus_clean_v2_segments/train-00098.parquet b/data/enterococcus_clean_v2_segments/train-00098.parquet new file mode 100644 index 0000000000000000000000000000000000000000..19f13469022c42415015a6463e5adc92aec368cc --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00098.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bc4089771753ed19af68b417b98ac4d38994facdedb65b9f7c2de64ef71d3eac +size 10464975 diff --git a/data/enterococcus_clean_v2_segments/train-00099.parquet b/data/enterococcus_clean_v2_segments/train-00099.parquet new file mode 100644 index 0000000000000000000000000000000000000000..916cfed03c33c4b1430086cbf1a5c01a9027ed14 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00099.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fbb3e54e4c9080952b1642095dbff48131da59cfca8635a63e0841be78f577ee +size 4660022 diff --git a/data/enterococcus_clean_v2_segments/train-00100.parquet b/data/enterococcus_clean_v2_segments/train-00100.parquet new file mode 100644 index 0000000000000000000000000000000000000000..2223b6a94af72c3e4bce2b3b91b596987418d396 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00100.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:578bffbbf99ca4a9590d27cb8ef4eea3444d1ea6b354457f1e6bbb4b74a991df +size 1804695 diff --git a/data/enterococcus_clean_v2_segments/train-00101.parquet b/data/enterococcus_clean_v2_segments/train-00101.parquet new file mode 100644 index 0000000000000000000000000000000000000000..4866ee6b2b22bc7a9df3114c701284e1721a67da --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00101.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f03b9b91fab0eaa264f4f209f0bd5e4d6c778369ee2ac4061c25385eaf9c9bc9 +size 3244673 diff --git a/data/enterococcus_clean_v2_segments/train-00102.parquet b/data/enterococcus_clean_v2_segments/train-00102.parquet new file mode 100644 index 0000000000000000000000000000000000000000..e23cc9dca5f78eab2ec5b4fff5c788f451bd481d --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00102.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b557abf8e95184b460946757247f6e40195485dcb5f537197294cfea81d63829 +size 18262476 diff --git a/data/enterococcus_clean_v2_segments/train-00103.parquet b/data/enterococcus_clean_v2_segments/train-00103.parquet new file mode 100644 index 0000000000000000000000000000000000000000..e755d5abf6db7db7a331c2a5c56b45b5fa84f5b8 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00103.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e55318ca8de37e966ead8fe67e9db7bf218e9fa6af47f54d326ade4d0a9b17b9 +size 2265195 diff --git a/data/enterococcus_clean_v2_segments/train-00104.parquet b/data/enterococcus_clean_v2_segments/train-00104.parquet new file mode 100644 index 0000000000000000000000000000000000000000..df22a459cdb60e1d4fb7492d7b3152536fe99c06 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00104.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:75a0ec6e6f86247214bfcbd915d7b6fd0f63af72d574c082515ef1ba5c786414 +size 1962341 diff --git a/data/enterococcus_clean_v2_segments/train-00105.parquet b/data/enterococcus_clean_v2_segments/train-00105.parquet new file mode 100644 index 0000000000000000000000000000000000000000..20713548ec1deb263c615b7e7317a504cf42c533 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00105.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d9288d64e21f1e84ab517f47e2765084dc29fbedcdeb42d873f9c8c71063f9ac +size 1757122 diff --git a/data/enterococcus_clean_v2_segments/train-00106.parquet b/data/enterococcus_clean_v2_segments/train-00106.parquet new file mode 100644 index 0000000000000000000000000000000000000000..48f4b43031844c75f81735c5d915cd7bbfe9ae0c --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00106.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3bdcd1d000fa17a24855ba2cabcd72b75ab58c07bad692a97f1589f91c47dc04 +size 1292256 diff --git a/data/enterococcus_clean_v2_segments/train-00107.parquet b/data/enterococcus_clean_v2_segments/train-00107.parquet new file mode 100644 index 0000000000000000000000000000000000000000..4bbd72dfdc0ca070bfc02311356c89dbf4198c29 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00107.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4bc09c12fec6f599c6d8a6d59dcfbfa3257fcc89971c13b5e895cab6cd1b6bae +size 10626896 diff --git a/data/enterococcus_clean_v2_segments/train-00108.parquet b/data/enterococcus_clean_v2_segments/train-00108.parquet new file mode 100644 index 0000000000000000000000000000000000000000..2bdc681ac586228bc452cd15af8012bc45d8d07a --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00108.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fb59a221013a373435cd3f0e7e600ac74fc7a92740dd03d27bc4db4c5d5fc331 +size 3542690 diff --git a/data/enterococcus_clean_v2_segments/train-00109.parquet b/data/enterococcus_clean_v2_segments/train-00109.parquet new file mode 100644 index 0000000000000000000000000000000000000000..0d01ba470b93727a1b3cf403b133334794b30174 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00109.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:457ca1ecfd613667f4b38252e3feaf81c8a4527cc4c3c549bef2c94459f68af1 +size 1773547 diff --git a/data/enterococcus_clean_v2_segments/train-00110.parquet b/data/enterococcus_clean_v2_segments/train-00110.parquet new file mode 100644 index 0000000000000000000000000000000000000000..d1c3f2807f07e1123c4f150cda43f759257228a9 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00110.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d3e6d3754346d464f38eea982635b98a1d87c58c2de34f86920d43c00ccbc328 +size 6696206 diff --git a/data/enterococcus_clean_v2_segments/train-00111.parquet b/data/enterococcus_clean_v2_segments/train-00111.parquet new file mode 100644 index 0000000000000000000000000000000000000000..a70a837834552607d868854d84d4851c1a0442e8 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00111.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fb96b4897d0eb78ad70a9a1b82185fc2281a545b0cf4ace5eb5b42e351214f44 +size 1119298 diff --git a/data/enterococcus_clean_v2_segments/train-00112.parquet b/data/enterococcus_clean_v2_segments/train-00112.parquet new file mode 100644 index 0000000000000000000000000000000000000000..d290471a57c970f1e64c175e4e0ba365786d181c --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00112.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e94df8de5eefa23c3d337be898e0f53c6033831bb0f8bd2a83acddc7190cd1ad +size 1700920 diff --git a/data/enterococcus_clean_v2_segments/train-00113.parquet b/data/enterococcus_clean_v2_segments/train-00113.parquet new file mode 100644 index 0000000000000000000000000000000000000000..7b4f8137544e36d8b9454abf81b619a41cb9f4d3 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00113.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eb16a05bdfd0e3441638c916a469d42602d4c114dac785c5bab88d37e622c63e +size 699907 diff --git a/data/enterococcus_clean_v2_segments/train-00114.parquet b/data/enterococcus_clean_v2_segments/train-00114.parquet new file mode 100644 index 0000000000000000000000000000000000000000..0dc6540d6a1b4dcf31c7f1e084135a31e5322ffd --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00114.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8002030bdcb9b92d47ee00609257c103be2245810e59b6be946be47e2a8b5d56 +size 4287766 diff --git a/data/enterococcus_clean_v2_segments/train-00115.parquet b/data/enterococcus_clean_v2_segments/train-00115.parquet new file mode 100644 index 0000000000000000000000000000000000000000..e2440049c6f34bfe07689049b639b0859cfd7c98 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00115.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2bd565a0a11bca0ef75e1901d244d6d6e541a738fce1504ac73f351d9b33ce71 +size 3105177 diff --git a/data/enterococcus_clean_v2_segments/train-00116.parquet b/data/enterococcus_clean_v2_segments/train-00116.parquet new file mode 100644 index 0000000000000000000000000000000000000000..9d57a5c64f001e4f79dc62705489997f1e8f8975 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00116.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d06afe42e7a54f76179132d327a32db0beccff7bf86fcd79b659d9c4cc7e1d71 +size 5307688 diff --git a/data/enterococcus_clean_v2_segments/train-00117.parquet b/data/enterococcus_clean_v2_segments/train-00117.parquet new file mode 100644 index 0000000000000000000000000000000000000000..a82ba862006534d1ac3756e0571ef27d858e9fb3 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00117.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:61d3300b136b654f5f6ee5ebeae00db06045cf16ea0d79223a3397edfabe770f +size 2489808 diff --git a/data/enterococcus_clean_v2_segments/train-00118.parquet b/data/enterococcus_clean_v2_segments/train-00118.parquet new file mode 100644 index 0000000000000000000000000000000000000000..4cb0214e4ec85cc99de59ceb85f319e75a856c48 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00118.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:be5a7bab64ee067e59441b2e10df5780d0d5ce0f4b408e98ce306450dea59bbd +size 543718 diff --git a/data/enterococcus_clean_v2_segments/train-00119.parquet b/data/enterococcus_clean_v2_segments/train-00119.parquet new file mode 100644 index 0000000000000000000000000000000000000000..5ccae17310aab2023a56a86105d41896cfaf867d --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00119.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c90655a096dca83876fb2d37edc47dcd6f3ff1460ab8b2a9a2803c36d0e429a0 +size 5260960 diff --git a/data/enterococcus_clean_v2_segments/train-00120.parquet b/data/enterococcus_clean_v2_segments/train-00120.parquet new file mode 100644 index 0000000000000000000000000000000000000000..c739a69dd44d15508348dbce4aeb4ac5989941e2 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00120.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eba151460543195eace82ba77569eec5ed185a6737f479df70c76f6a95dd0be0 +size 2269225 diff --git a/data/enterococcus_clean_v2_segments/train-00121.parquet b/data/enterococcus_clean_v2_segments/train-00121.parquet new file mode 100644 index 0000000000000000000000000000000000000000..a22374f516e1179384d3e7c53f3196913c31d6bd --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00121.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bb32b0afa1182553399f85591d6770949d4634b4ae1cd5bcecc9704a9d650245 +size 3535273 diff --git a/data/enterococcus_clean_v2_segments/train-00122.parquet b/data/enterococcus_clean_v2_segments/train-00122.parquet new file mode 100644 index 0000000000000000000000000000000000000000..3960ad55feed325385e738d826c66d1538183323 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00122.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:780d6ec7c254ea88747c03a81a62192e32d56aa65b24c899b9c00bbbc300a870 +size 1157284 diff --git a/data/enterococcus_clean_v2_segments/train-00123.parquet b/data/enterococcus_clean_v2_segments/train-00123.parquet new file mode 100644 index 0000000000000000000000000000000000000000..6fa8475fcd484ebf0cac7b649076328990f5d532 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00123.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:482854e8e0f2c52a53952d9f77ac7084f94cbd75bf90cd984a71a793bd3618a6 +size 1187733 diff --git a/data/enterococcus_clean_v2_segments/train-00124.parquet b/data/enterococcus_clean_v2_segments/train-00124.parquet new file mode 100644 index 0000000000000000000000000000000000000000..9873a64a218b272631bedef8f33a645c8949225b --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00124.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:02c4b5bd9d090007d03fdb5ab4f17d40a9d6e7a2aa983eb7f89d1611c7a4e9f0 +size 5932002 diff --git a/data/enterococcus_clean_v2_segments/train-00125.parquet b/data/enterococcus_clean_v2_segments/train-00125.parquet new file mode 100644 index 0000000000000000000000000000000000000000..0f3ca4a60ec9b73836662f6fdcef5d4275e64806 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00125.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:75647afbcffb0e6bd27ab33758205ae3dd1d6bd7bea9992de1104650e54ecef9 +size 633823 diff --git a/data/enterococcus_clean_v2_segments/train-00126.parquet b/data/enterococcus_clean_v2_segments/train-00126.parquet new file mode 100644 index 0000000000000000000000000000000000000000..85fa7de2d53b1c08c8bf521fc90a8312e150a007 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00126.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ae28ececb907b4cd365ba95adbecbb1271a9456f30ddada18209df56d3b01f86 +size 1705713 diff --git a/data/enterococcus_clean_v2_segments/train-00127.parquet b/data/enterococcus_clean_v2_segments/train-00127.parquet new file mode 100644 index 0000000000000000000000000000000000000000..f2aa810445da511ea8c8574a72d3ed19fd103539 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00127.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e12ea7f18ae9176d78405dc6eedf2ac38cb7fae20bfb9da4a2fa1b5ace5d4901 +size 4684095 diff --git a/data/enterococcus_clean_v2_segments/train-00128.parquet b/data/enterococcus_clean_v2_segments/train-00128.parquet new file mode 100644 index 0000000000000000000000000000000000000000..886d585fdd20c381fe7f1e10b6b1d79f1262082a --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00128.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2a970cd19aa1d55742816f208ebfd6fdc8e8834c4b6c131f583570bc6382605d +size 2335480 diff --git a/data/enterococcus_clean_v2_segments/train-00129.parquet b/data/enterococcus_clean_v2_segments/train-00129.parquet new file mode 100644 index 0000000000000000000000000000000000000000..6f928d6cdfeb04588885b3f83d4b631c2208decd --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00129.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:637d3f87c785ac9965a2dbf8e0e52b86a89e5f6b706785d1d2778e6a813612e5 +size 547741 diff --git a/data/enterococcus_clean_v2_segments/train-00130.parquet b/data/enterococcus_clean_v2_segments/train-00130.parquet new file mode 100644 index 0000000000000000000000000000000000000000..d677c88168a439b1477c812ec6648782fb26cea0 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00130.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d910a0661bca1d61b0e59f334b5ade7d1a123e9e711777f719a6cde7e98a7baa +size 636059 diff --git a/data/enterococcus_clean_v2_segments/train-00131.parquet b/data/enterococcus_clean_v2_segments/train-00131.parquet new file mode 100644 index 0000000000000000000000000000000000000000..5e76e131a32cd91617776aade78f803a2cbd8913 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00131.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:92d5955481cbcb3795ea8d3589bd0ae9215b00a6d86725a058273b9f1d6a1105 +size 2280833 diff --git a/data/enterococcus_clean_v2_segments/train-00132.parquet b/data/enterococcus_clean_v2_segments/train-00132.parquet new file mode 100644 index 0000000000000000000000000000000000000000..3a36d2f475e337388fcc628a309735daa880126b --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00132.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:212de748c9fb5c0e575169f916eaba0e3982ff703f6a96bedd37fcf8213409ec +size 589609 diff --git a/data/enterococcus_clean_v2_segments/train-00133.parquet b/data/enterococcus_clean_v2_segments/train-00133.parquet new file mode 100644 index 0000000000000000000000000000000000000000..5b15752bbafbb06f556735289d38a86544de4152 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00133.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d4b01f8e963ada2f5b1b0199a91a29ba06fe14652c90ad8c8d882068483954c3 +size 1173443 diff --git a/data/enterococcus_clean_v2_segments/train-00134.parquet b/data/enterococcus_clean_v2_segments/train-00134.parquet new file mode 100644 index 0000000000000000000000000000000000000000..c429a809db41b9bc95f808e09100c9410795487c --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00134.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:26681b8e25ef0b92b7a40521c05aed47ca95d257f7ce341b2d298d577f3d3e56 +size 610129 diff --git a/data/enterococcus_clean_v2_segments/train-00135.parquet b/data/enterococcus_clean_v2_segments/train-00135.parquet new file mode 100644 index 0000000000000000000000000000000000000000..4fb8d109e2d2791801a7d67e90644cbf250bbf25 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00135.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5a96e065a1112d01014fe57fef1220e008bc6923ce71e08467a8dfb12caa4832 +size 1195346 diff --git a/data/enterococcus_clean_v2_segments/train-00136.parquet b/data/enterococcus_clean_v2_segments/train-00136.parquet new file mode 100644 index 0000000000000000000000000000000000000000..50fda3d7377e94576bbc078d7d97fb1d8745fb0b --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00136.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:32558b62ca9c35520d39474eb472f2a1a13b30446626e41b62063a1e63cd1acf +size 7347243 diff --git a/data/enterococcus_clean_v2_segments/train-00137.parquet b/data/enterococcus_clean_v2_segments/train-00137.parquet new file mode 100644 index 0000000000000000000000000000000000000000..d0dd23d4478514520d244f32de79f59ffb4b3343 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00137.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:eb7b0cd327882abe1184cc88536d789706ab37ed66c1b2184e72fc88a7932e17 +size 1214060 diff --git a/data/enterococcus_clean_v2_segments/train-00138.parquet b/data/enterococcus_clean_v2_segments/train-00138.parquet new file mode 100644 index 0000000000000000000000000000000000000000..15a52fe3e5018b693ef56ecb2dd28760d014c105 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00138.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e25200d81dcb4753ccdc2ea94b588e7668cdbb1e754f262ae6d404f358b0e624 +size 2009889 diff --git a/data/enterococcus_clean_v2_segments/train-00139.parquet b/data/enterococcus_clean_v2_segments/train-00139.parquet new file mode 100644 index 0000000000000000000000000000000000000000..bfdc7083129860de0d9f6073a34114caaa27b97f --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00139.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:454554970528ad41bca04ac0ae257a118b843b685ce2a05d960a93cefbc6efa0 +size 1163251 diff --git a/data/enterococcus_clean_v2_segments/train-00140.parquet b/data/enterococcus_clean_v2_segments/train-00140.parquet new file mode 100644 index 0000000000000000000000000000000000000000..6056024776bf84c7fc4966dc02739c6add30e0b7 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00140.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d089b2e9c9aa74bbf8fbeb727478bce0ce16dd917b4df9fa64e4606e322ae1cf +size 609816 diff --git a/data/enterococcus_clean_v2_segments/train-00141.parquet b/data/enterococcus_clean_v2_segments/train-00141.parquet new file mode 100644 index 0000000000000000000000000000000000000000..94ffafb2239998f443012b199c1362b499a04047 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00141.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:88298a51d501b9b24e4db346805dd1ba1e6e001376b2b8717913b0e7642e2171 +size 20395938 diff --git a/data/enterococcus_clean_v2_segments/train-00142.parquet b/data/enterococcus_clean_v2_segments/train-00142.parquet new file mode 100644 index 0000000000000000000000000000000000000000..308d9172ade7858002bb2f4a4796ea1c8711e4f7 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00142.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1a260d5fd6747f5637d434ea529e1e8ce685a06c07182b7f94d25c469e2feab7 +size 27215409 diff --git a/data/enterococcus_clean_v2_segments/train-00143.parquet b/data/enterococcus_clean_v2_segments/train-00143.parquet new file mode 100644 index 0000000000000000000000000000000000000000..c1786bb08852aee35a42f2e3036659e2755f1b28 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00143.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b59c845c4498241894a6adbcfe96309d1f34cf476420ac0c48712cf03657bf24 +size 3557275 diff --git a/data/enterococcus_clean_v2_segments/train-00144.parquet b/data/enterococcus_clean_v2_segments/train-00144.parquet new file mode 100644 index 0000000000000000000000000000000000000000..7f51af7349544d2e20d143ba0bda55fa45649a4e --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00144.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0b4e9f2821068b4b61d44d13479e7e475c0f1dc776578ffacd6bccf20a5cff93 +size 1158826 diff --git a/data/enterococcus_clean_v2_segments/train-00145.parquet b/data/enterococcus_clean_v2_segments/train-00145.parquet new file mode 100644 index 0000000000000000000000000000000000000000..dc3dd11aa7ba982a45f6197df730cf71f2a6955f --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00145.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2a2b29e0cc43033c3db6c46fd6ab300743c4eafbccba3b28fc4481d73056e6d9 +size 2278869 diff --git a/data/enterococcus_clean_v2_segments/train-00146.parquet b/data/enterococcus_clean_v2_segments/train-00146.parquet new file mode 100644 index 0000000000000000000000000000000000000000..ea15e2fb14688f08785b328e9ab55f5a1ab86c56 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00146.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fb1accb8a40018a9a3d1a71dea55558b66a8bd3371d2d37a446c1fe88904671d +size 2931846 diff --git a/data/enterococcus_clean_v2_segments/train-00147.parquet b/data/enterococcus_clean_v2_segments/train-00147.parquet new file mode 100644 index 0000000000000000000000000000000000000000..51eaadc8d107d53bf88c3d2a08c6467f37bce568 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00147.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8d58d83aa2992eb87de04ff9678471702327e3f0df7dd5447fb09d96ea4fe0d6 +size 6425179 diff --git a/data/enterococcus_clean_v2_segments/train-00148.parquet b/data/enterococcus_clean_v2_segments/train-00148.parquet new file mode 100644 index 0000000000000000000000000000000000000000..62668a2e5f3c66f1b39c648e02a85b809a1cf25f --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00148.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:184455e2f8bf69f4d9dd01959a1a5441fb8024244bdb0ad7d1d6167e18728dfa +size 3764001 diff --git a/data/enterococcus_clean_v2_segments/train-00149.parquet b/data/enterococcus_clean_v2_segments/train-00149.parquet new file mode 100644 index 0000000000000000000000000000000000000000..91d60d1a0ef544efdb530ed4549f2b0ad98fccd1 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00149.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cebc84ff827cc383fca729e7846175be2e64e3ffb93a5c05e2891bc9f2b9e967 +size 7086230 diff --git a/data/enterococcus_clean_v2_segments/train-00150.parquet b/data/enterococcus_clean_v2_segments/train-00150.parquet new file mode 100644 index 0000000000000000000000000000000000000000..1d75e298cdfddcab222f80d7befa5b42f891ba2d --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00150.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4085d89615d448cb8a2d2d687ce010e920dab33fd322bb1f7df8ce4158d7ac60 +size 4676922 diff --git a/data/enterococcus_clean_v2_segments/train-00151.parquet b/data/enterococcus_clean_v2_segments/train-00151.parquet new file mode 100644 index 0000000000000000000000000000000000000000..cacab85df3e3bc716eadaea2933a90ca0b26e5d9 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00151.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:521d337228a31ea0d0580d8a01cb324dd73e52cffe4c7a2416e9733a5565f48f +size 1866475 diff --git a/data/enterococcus_clean_v2_segments/train-00152.parquet b/data/enterococcus_clean_v2_segments/train-00152.parquet new file mode 100644 index 0000000000000000000000000000000000000000..6b10b8f3546f5ea43423d0d9f8e290d60e34e389 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00152.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:263ef1c2fb205026238412b546492bb84345fc2450cef805283a0aee3571844f +size 2301940 diff --git a/data/enterococcus_clean_v2_segments/train-00153.parquet b/data/enterococcus_clean_v2_segments/train-00153.parquet new file mode 100644 index 0000000000000000000000000000000000000000..7b2346d2ed845a4e59038da5b4905f4667f72902 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00153.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c98c73a5bcd7e1cf67a2579e33e8c048fa4eb6d985a2ac125b2e6853cdcd9137 +size 1249271 diff --git a/data/enterococcus_clean_v2_segments/train-00154.parquet b/data/enterococcus_clean_v2_segments/train-00154.parquet new file mode 100644 index 0000000000000000000000000000000000000000..2e43c63e3323706a2c5fa27105ac2db84913463b --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00154.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:109b3fd8577c9363d33a6ab8de61a7e0813a1726364fddfc17a4e971acb664e2 +size 1247089 diff --git a/data/enterococcus_clean_v2_segments/train-00155.parquet b/data/enterococcus_clean_v2_segments/train-00155.parquet new file mode 100644 index 0000000000000000000000000000000000000000..221e16de115e84775961c8fa6d17032e5709cd8a --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00155.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:292daca5e4bddfc429fca5c8da0632348b052d7d44ab689ed8aaca6dc7714502 +size 590270 diff --git a/data/enterococcus_clean_v2_segments/train-00156.parquet b/data/enterococcus_clean_v2_segments/train-00156.parquet new file mode 100644 index 0000000000000000000000000000000000000000..03891a06c82050bef256cac484351279754e02a1 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00156.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bbc5f018e3a0ce4e07240890f2edcbab7974d34bea78809d6e1568510c3ab504 +size 630131 diff --git a/data/enterococcus_clean_v2_segments/train-00157.parquet b/data/enterococcus_clean_v2_segments/train-00157.parquet new file mode 100644 index 0000000000000000000000000000000000000000..57c240514c27f6d015179eb270c548b0d7a8a5a0 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00157.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ca1fc6fbddc6dd54f67022c0ba3bc3c9c3645beb95951945279451b4be88555e +size 3767640 diff --git a/data/enterococcus_clean_v2_segments/train-00158.parquet b/data/enterococcus_clean_v2_segments/train-00158.parquet new file mode 100644 index 0000000000000000000000000000000000000000..b1f9ed842991b0d811b60dd0a99691b3104f1f9b --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00158.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:47fcf332ef4ad08077629313051fd8997b86d406c7a897e69ce43990009e997a +size 3523506 diff --git a/data/enterococcus_clean_v2_segments/train-00159.parquet b/data/enterococcus_clean_v2_segments/train-00159.parquet new file mode 100644 index 0000000000000000000000000000000000000000..8f6cc8c0a22c1ceecbd05cf4efc36c6ecee575ab --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00159.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d49cc85c3b50b1f2f6e92f91009ad8853deece4c56941f64d3eb949387f000e5 +size 4853894 diff --git a/data/enterococcus_clean_v2_segments/train-00160.parquet b/data/enterococcus_clean_v2_segments/train-00160.parquet new file mode 100644 index 0000000000000000000000000000000000000000..56ce65c146da5f57642cbdf5919a32fe7de91630 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00160.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6f62674295f061be61bf4fec5907050eb7dbeb66fc2a9abf384ec7f73e3d8e23 +size 1161712 diff --git a/data/enterococcus_clean_v2_segments/train-00161.parquet b/data/enterococcus_clean_v2_segments/train-00161.parquet new file mode 100644 index 0000000000000000000000000000000000000000..783d642a857b7aadaff09d916f7d5df3f128db84 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00161.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:66d3b9cde8c079e0142c163ef2d9c62a187f7ab74e8ea2876f8234aca88d73e1 +size 2259497 diff --git a/data/enterococcus_clean_v2_segments/train-00162.parquet b/data/enterococcus_clean_v2_segments/train-00162.parquet new file mode 100644 index 0000000000000000000000000000000000000000..3a6943494d5f54c3e52dce4cc6c9ccdbdf02397b --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00162.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0e3d6cdcd47468a36d4b95f5fd7e63e90bebe6ca309076d85a7024daecaf976d +size 1838843 diff --git a/data/enterococcus_clean_v2_segments/train-00163.parquet b/data/enterococcus_clean_v2_segments/train-00163.parquet new file mode 100644 index 0000000000000000000000000000000000000000..3193267d06ba331fc843c0f5fbaac303a6da4f27 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00163.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8a2cfa3f9950fc893a95760ec3d18ce89fefd008910336c26d2f7d14416c0824 +size 514625 diff --git a/data/enterococcus_clean_v2_segments/train-00164.parquet b/data/enterococcus_clean_v2_segments/train-00164.parquet new file mode 100644 index 0000000000000000000000000000000000000000..c72478286b48f4fb9a4660beae4caac299da807a --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00164.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4baceb6077f83cafd90dac100f075371e8596b02f642ca94b8bab30499f1944c +size 1346957 diff --git a/data/enterococcus_clean_v2_segments/train-00165.parquet b/data/enterococcus_clean_v2_segments/train-00165.parquet new file mode 100644 index 0000000000000000000000000000000000000000..8e27df6360cf58a63d1fc42dfb69561522ad7bd5 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00165.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:caa8c3889c080b30f427dbb572964d25ea5c0865436abf57750de48a34b4456f +size 3633079 diff --git a/data/enterococcus_clean_v2_segments/train-00166.parquet b/data/enterococcus_clean_v2_segments/train-00166.parquet new file mode 100644 index 0000000000000000000000000000000000000000..d171bf622f19b4e2b242e1875a9f7930fffdac86 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00166.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:571481fb0eecff24bde5eb8b01bd5580ce9f9a136b7b64f5a80dd0c744203a52 +size 1213627 diff --git a/data/enterococcus_clean_v2_segments/train-00167.parquet b/data/enterococcus_clean_v2_segments/train-00167.parquet new file mode 100644 index 0000000000000000000000000000000000000000..475979d6e9267414bb3c5a6d85a47eeb8c64829a --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00167.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:03ebbd98b0afb7ed0564832f26ba0df1129634db7e4435448eca9cff65342d6b +size 27353472 diff --git a/data/enterococcus_clean_v2_segments/train-00168.parquet b/data/enterococcus_clean_v2_segments/train-00168.parquet new file mode 100644 index 0000000000000000000000000000000000000000..b83b7b752653ae6eb577dc79c87b42af745e96c1 --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00168.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a33179039a128fdbbe6667d61030ee04ecdad29011d4540de793807bcdda66be +size 3597966 diff --git a/data/enterococcus_clean_v2_segments/train-00169.parquet b/data/enterococcus_clean_v2_segments/train-00169.parquet new file mode 100644 index 0000000000000000000000000000000000000000..38717ffeb647a27d560701cf944a5d172380233d --- /dev/null +++ b/data/enterococcus_clean_v2_segments/train-00169.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:289e9dd812f134889e77a838aa23a9b46f768218d4ffbe8cda292f3114e4e601 +size 1172584 diff --git a/prepared_files.json b/prepared_files.json index 709b32073e3fa14b4a338b129854a381ce3edcb6..a66bdde62884df1475d72931072cb2f5be968824 100644 --- a/prepared_files.json +++ b/prepared_files.json @@ -176,6 +176,7 @@ "enterococcus_clean_v2_segments": { "columns": [ "segment_id", + "sequence_id", "source_segment_id", "labels", "segment", @@ -239,6 +240,9 @@ "False": 182180 }, "rows": 182180, + "sequence_id_max": 2518, + "sequence_id_min": 0, + "sequence_id_unique": 2519, "training_eligible_current_clean_counts": { "True": 182180 } @@ -246,856 +250,860 @@ "segment_id_contiguous": true, "segment_id_max": 910899, "segment_id_min": 0, + "sequence_id_contiguous": true, + "sequence_id_max": 5132, + "sequence_id_min": 0, + "sequence_id_unique": 5133, "training_eligible_current_clean_rows": 883483 }, "files": [ { - "bytes": 109413680, + "bytes": 109564146, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00000.parquet", "rows": 100000 }, { - "bytes": 89880934, + "bytes": 90006778, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00001.parquet", "rows": 82180 }, { - "bytes": 2371718, + "bytes": 2373378, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00002.parquet", "rows": 1960 }, { - "bytes": 1213420, + "bytes": 1213757, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00003.parquet", "rows": 980 }, { - "bytes": 1416552, + "bytes": 1416889, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00004.parquet", "rows": 1126 }, { - "bytes": 1204422, + "bytes": 1204759, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00005.parquet", "rows": 980 }, { - "bytes": 2109623, + "bytes": 2110091, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00006.parquet", "rows": 1706 }, { - "bytes": 1218631, + "bytes": 1218968, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00007.parquet", "rows": 986 }, { - "bytes": 573635, + "bytes": 573961, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00008.parquet", "rows": 444 }, { - "bytes": 646474, + "bytes": 647219, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00009.parquet", "rows": 530 }, { - "bytes": 564520, + "bytes": 564846, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00010.parquet", "rows": 444 }, { - "bytes": 616345, + "bytes": 616671, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00011.parquet", "rows": 492 }, { - "bytes": 3041801, + "bytes": 3042227, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00012.parquet", "rows": 2498 }, { - "bytes": 3020739, + "bytes": 3021135, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00013.parquet", "rows": 2460 }, { - "bytes": 2236462, + "bytes": 2236812, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00014.parquet", "rows": 1824 }, { - "bytes": 661076, + "bytes": 661402, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00015.parquet", "rows": 526 }, { - "bytes": 13453707, + "bytes": 13454178, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00016.parquet", "rows": 11126 }, { - "bytes": 3057848, + "bytes": 3058203, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00017.parquet", "rows": 2480 }, { - "bytes": 10500205, + "bytes": 10500639, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00018.parquet", "rows": 8634 }, { - "bytes": 12926854, + "bytes": 12927528, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00019.parquet", "rows": 10658 }, { - "bytes": 56779961, + "bytes": 56781188, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00020.parquet", "rows": 47026 }, { - "bytes": 1696422, + "bytes": 1696766, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00021.parquet", "rows": 1372 }, { - "bytes": 3530165, + "bytes": 3530526, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00022.parquet", "rows": 2886 }, { - "bytes": 632557, + "bytes": 632883, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00023.parquet", "rows": 500 }, { - "bytes": 133496060, + "bytes": 133497758, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00024.parquet", "rows": 110812 }, { - "bytes": 4244990, + "bytes": 4245360, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00025.parquet", "rows": 3468 }, { - "bytes": 6681692, + "bytes": 6682085, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00026.parquet", "rows": 5480 }, { - "bytes": 77570134, + "bytes": 77571274, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00027.parquet", "rows": 64272 }, { - "bytes": 5391432, + "bytes": 5391814, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00028.parquet", "rows": 4432 }, { - "bytes": 5426472, + "bytes": 5427005, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00029.parquet", "rows": 4464 }, { - "bytes": 504012, + "bytes": 504338, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00030.parquet", "rows": 394 }, { - "bytes": 631113, + "bytes": 631439, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00031.parquet", "rows": 502 }, { - "bytes": 562774, + "bytes": 563100, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00032.parquet", "rows": 438 }, { - "bytes": 3567970, + "bytes": 3568340, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00033.parquet", "rows": 2920 }, { - "bytes": 702709, + "bytes": 703035, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00034.parquet", "rows": 550 }, { - "bytes": 12100727, + "bytes": 12105591, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00035.parquet", "rows": 10088 }, { - "bytes": 1197646, + "bytes": 1197983, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00036.parquet", "rows": 970 }, { - "bytes": 2384183, + "bytes": 2384533, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00037.parquet", "rows": 1948 }, { - "bytes": 1856465, + "bytes": 1856809, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00038.parquet", "rows": 1500 }, { - "bytes": 1791964, + "bytes": 1792647, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00039.parquet", "rows": 1440 }, { - "bytes": 1187809, + "bytes": 1188146, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00040.parquet", "rows": 964 }, { - "bytes": 2948882, + "bytes": 2949785, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00041.parquet", "rows": 2414 }, { - "bytes": 602659, + "bytes": 603182, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00042.parquet", "rows": 468 }, { - "bytes": 8312390, + "bytes": 8312800, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00043.parquet", "rows": 6864 }, { - "bytes": 1182381, + "bytes": 1182718, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00044.parquet", "rows": 958 }, { - "bytes": 3675118, + "bytes": 3675853, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00045.parquet", "rows": 3016 }, { - "bytes": 623141, + "bytes": 623467, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00046.parquet", "rows": 490 }, { - "bytes": 1433034, + "bytes": 1433526, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00047.parquet", "rows": 1158 }, { - "bytes": 2486627, + "bytes": 2486977, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00048.parquet", "rows": 2024 }, { - "bytes": 1816116, + "bytes": 1816460, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00049.parquet", "rows": 1470 }, { - "bytes": 6754308, + "bytes": 6754701, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00050.parquet", "rows": 5546 }, { - "bytes": 4003220, + "bytes": 4003784, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00051.parquet", "rows": 3268 }, { - "bytes": 5918015, + "bytes": 5918861, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00052.parquet", "rows": 4870 }, { - "bytes": 1218130, + "bytes": 1218467, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00053.parquet", "rows": 984 }, { - "bytes": 2390252, + "bytes": 2390602, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00054.parquet", "rows": 1926 }, { - "bytes": 567006, + "bytes": 567332, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00055.parquet", "rows": 442 }, { - "bytes": 1441197, + "bytes": 1441534, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00056.parquet", "rows": 1148 }, { - "bytes": 4039784, + "bytes": 4040153, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00057.parquet", "rows": 3302 }, { - "bytes": 577631, + "bytes": 577957, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00058.parquet", "rows": 464 }, { - "bytes": 2317399, + "bytes": 2317870, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00059.parquet", "rows": 1884 }, { - "bytes": 8174566, + "bytes": 8174971, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00060.parquet", "rows": 6692 }, { - "bytes": 4963361, + "bytes": 4963743, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00061.parquet", "rows": 4076 }, { - "bytes": 7137499, + "bytes": 7137904, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00062.parquet", "rows": 5852 }, { - "bytes": 1783770, + "bytes": 1784114, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00063.parquet", "rows": 1434 }, { - "bytes": 3213477, + "bytes": 3213832, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00064.parquet", "rows": 2604 }, { - "bytes": 2550147, + "bytes": 2552029, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00065.parquet", "rows": 2180 }, { - "bytes": 3514262, + "bytes": 3515753, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00066.parquet", "rows": 2890 }, { - "bytes": 2815710, + "bytes": 2816065, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00067.parquet", "rows": 2312 }, { - "bytes": 6314574, + "bytes": 6314967, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00068.parquet", "rows": 5214 }, { - "bytes": 1288890, + "bytes": 1289227, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00069.parquet", "rows": 1030 }, { - "bytes": 5613228, + "bytes": 5615710, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00070.parquet", "rows": 4616 }, { - "bytes": 2675972, + "bytes": 2676322, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00071.parquet", "rows": 2162 }, { - "bytes": 2330353, + "bytes": 2330704, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00072.parquet", "rows": 1902 }, { - "bytes": 12050161, + "bytes": 12050613, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00073.parquet", "rows": 9938 }, { - "bytes": 14584263, + "bytes": 14584739, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00074.parquet", "rows": 12008 }, { - "bytes": 1218981, + "bytes": 1219318, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00075.parquet", "rows": 978 }, { - "bytes": 2323101, + "bytes": 2323453, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00076.parquet", "rows": 1912 }, { - "bytes": 5843418, + "bytes": 5843805, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00077.parquet", "rows": 4796 }, { - "bytes": 5560557, + "bytes": 5560944, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00078.parquet", "rows": 4568 }, { - "bytes": 1307208, + "bytes": 1307545, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00079.parquet", "rows": 1050 }, { - "bytes": 6123821, + "bytes": 6124214, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00080.parquet", "rows": 5028 }, { - "bytes": 2713537, + "bytes": 2713892, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00081.parquet", "rows": 2220 }, { - "bytes": 2992871, + "bytes": 2993226, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00082.parquet", "rows": 2424 }, { - "bytes": 4668361, + "bytes": 4668737, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00083.parquet", "rows": 3842 }, { - "bytes": 4749520, + "bytes": 4750353, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00084.parquet", "rows": 3902 }, { - "bytes": 1685608, + "bytes": 1685952, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00085.parquet", "rows": 1382 }, { - "bytes": 3719887, + "bytes": 3720248, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00086.parquet", "rows": 3034 }, { - "bytes": 5525007, + "bytes": 5525389, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00087.parquet", "rows": 4544 }, { - "bytes": 716189, + "bytes": 716665, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00088.parquet", "rows": 554 }, { - "bytes": 9154634, + "bytes": 9155050, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00089.parquet", "rows": 7524 }, { - "bytes": 1934016, + "bytes": 1934360, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00090.parquet", "rows": 1558 }, { - "bytes": 1204617, + "bytes": 1204954, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00091.parquet", "rows": 982 }, { - "bytes": 23881771, + "bytes": 23882330, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00092.parquet", "rows": 19664 }, { - "bytes": 2376519, + "bytes": 2376869, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00093.parquet", "rows": 1946 }, { - "bytes": 1201672, + "bytes": 1202009, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00094.parquet", "rows": 972 }, { - "bytes": 570297, + "bytes": 570623, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00095.parquet", "rows": 458 }, { - "bytes": 1178405, + "bytes": 1179116, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00096.parquet", "rows": 970 }, { - "bytes": 1951631, + "bytes": 1952427, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00097.parquet", "rows": 1578 }, { - "bytes": 10464535, + "bytes": 10464975, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00098.parquet", "rows": 8608 }, { - "bytes": 4659646, + "bytes": 4660022, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00099.parquet", "rows": 3836 }, { - "bytes": 1804351, + "bytes": 1804695, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00100.parquet", "rows": 1474 }, { - "bytes": 3244318, + "bytes": 3244673, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00101.parquet", "rows": 2640 }, { - "bytes": 18261102, + "bytes": 18262476, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00102.parquet", "rows": 15026 }, { - "bytes": 2264845, + "bytes": 2265195, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00103.parquet", "rows": 1842 }, { - "bytes": 1961997, + "bytes": 1962341, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00104.parquet", "rows": 1588 }, { - "bytes": 1756778, + "bytes": 1757122, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00105.parquet", "rows": 1426 }, { - "bytes": 1291919, + "bytes": 1292256, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00106.parquet", "rows": 1032 }, { - "bytes": 10626456, + "bytes": 10626896, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00107.parquet", "rows": 8752 }, { - "bytes": 3542329, + "bytes": 3542690, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00108.parquet", "rows": 2892 }, { - "bytes": 1773203, + "bytes": 1773547, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00109.parquet", "rows": 1440 }, { - "bytes": 6695813, + "bytes": 6696206, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00110.parquet", "rows": 5490 }, { - "bytes": 1118791, + "bytes": 1119298, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00111.parquet", "rows": 900 }, { - "bytes": 1700220, + "bytes": 1700920, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00112.parquet", "rows": 1388 }, { - "bytes": 699550, + "bytes": 699907, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00113.parquet", "rows": 556 }, { - "bytes": 4287397, + "bytes": 4287766, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00114.parquet", "rows": 3502 }, { - "bytes": 3104816, + "bytes": 3105177, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00115.parquet", "rows": 2594 }, { - "bytes": 5307306, + "bytes": 5307688, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00116.parquet", "rows": 4360 }, { - "bytes": 2489458, + "bytes": 2489808, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00117.parquet", "rows": 2020 }, { - "bytes": 543392, + "bytes": 543718, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00118.parquet", "rows": 436 }, { - "bytes": 5260578, + "bytes": 5260960, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00119.parquet", "rows": 4322 }, { - "bytes": 2268875, + "bytes": 2269225, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00120.parquet", "rows": 1850 }, { - "bytes": 3534912, + "bytes": 3535273, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00121.parquet", "rows": 2900 }, { - "bytes": 1156947, + "bytes": 1157284, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00122.parquet", "rows": 934 }, { - "bytes": 1187396, + "bytes": 1187733, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00123.parquet", "rows": 962 }, { - "bytes": 5931615, + "bytes": 5932002, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00124.parquet", "rows": 4904 }, { - "bytes": 633497, + "bytes": 633823, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00125.parquet", "rows": 498 }, { - "bytes": 1705369, + "bytes": 1705713, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00126.parquet", "rows": 1404 }, { - "bytes": 4683719, + "bytes": 4684095, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00127.parquet", "rows": 3864 }, { - "bytes": 2335130, + "bytes": 2335480, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00128.parquet", "rows": 1926 }, { - "bytes": 547415, + "bytes": 547741, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00129.parquet", "rows": 438 }, { - "bytes": 635733, + "bytes": 636059, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00130.parquet", "rows": 492 }, { - "bytes": 2280483, + "bytes": 2280833, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00131.parquet", "rows": 1842 }, { - "bytes": 589283, + "bytes": 589609, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00132.parquet", "rows": 470 }, { - "bytes": 1173106, + "bytes": 1173443, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00133.parquet", "rows": 946 }, { - "bytes": 609803, + "bytes": 610129, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00134.parquet", "rows": 476 }, { - "bytes": 1195009, + "bytes": 1195346, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00135.parquet", "rows": 964 }, { - "bytes": 7346838, + "bytes": 7347243, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00136.parquet", "rows": 6054 }, { - "bytes": 1213723, + "bytes": 1214060, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00137.parquet", "rows": 986 }, { - "bytes": 2009173, + "bytes": 2009889, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00138.parquet", "rows": 1620 }, { - "bytes": 1162914, + "bytes": 1163251, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00139.parquet", "rows": 942 }, { - "bytes": 609490, + "bytes": 609816, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00140.parquet", "rows": 482 }, { - "bytes": 20395408, + "bytes": 20395938, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00141.parquet", "rows": 16776 }, { - "bytes": 27214745, + "bytes": 27215409, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00142.parquet", "rows": 22460 }, { - "bytes": 3556532, + "bytes": 3557275, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00143.parquet", "rows": 2922 }, { - "bytes": 1158489, + "bytes": 1158826, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00144.parquet", "rows": 938 }, { - "bytes": 2278075, + "bytes": 2278869, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00145.parquet", "rows": 1862 }, { - "bytes": 2931135, + "bytes": 2931846, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00146.parquet", "rows": 2378 }, { - "bytes": 6424786, + "bytes": 6425179, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00147.parquet", "rows": 5280 }, { - "bytes": 3763640, + "bytes": 3764001, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00148.parquet", "rows": 3082 }, { - "bytes": 7085831, + "bytes": 7086230, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00149.parquet", "rows": 5840 }, { - "bytes": 4676546, + "bytes": 4676922, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00150.parquet", "rows": 3844 }, { - "bytes": 1866131, + "bytes": 1866475, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00151.parquet", "rows": 1510 }, { - "bytes": 2301274, + "bytes": 2301940, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00152.parquet", "rows": 1876 }, { - "bytes": 1248934, + "bytes": 1249271, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00153.parquet", "rows": 1006 }, { - "bytes": 1246752, + "bytes": 1247089, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00154.parquet", "rows": 994 }, { - "bytes": 589944, + "bytes": 590270, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00155.parquet", "rows": 462 }, { - "bytes": 629805, + "bytes": 630131, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00156.parquet", "rows": 498 }, { - "bytes": 3767277, + "bytes": 3767640, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00157.parquet", "rows": 3076 }, { - "bytes": 3523145, + "bytes": 3523506, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00158.parquet", "rows": 2898 }, { - "bytes": 4853518, + "bytes": 4853894, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00159.parquet", "rows": 3980 }, { - "bytes": 1161375, + "bytes": 1161712, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00160.parquet", "rows": 938 }, { - "bytes": 2259147, + "bytes": 2259497, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00161.parquet", "rows": 1842 }, { - "bytes": 1838499, + "bytes": 1838843, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00162.parquet", "rows": 1486 }, { - "bytes": 514299, + "bytes": 514625, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00163.parquet", "rows": 398 }, { - "bytes": 1346620, + "bytes": 1346957, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00164.parquet", "rows": 1074 }, { - "bytes": 3632718, + "bytes": 3633079, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00165.parquet", "rows": 2970 }, { - "bytes": 1213262, + "bytes": 1213627, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00166.parquet", "rows": 974 }, { - "bytes": 27352391, + "bytes": 27353472, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00167.parquet", "rows": 22584 }, { - "bytes": 3597605, + "bytes": 3597966, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00168.parquet", "rows": 2966 }, { - "bytes": 1172247, + "bytes": 1172584, "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00169.parquet", "rows": 956 } diff --git a/reports/dataset_manifest.json b/reports/dataset_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..9645d7ca497adb5237b051e7cd12281af1774d39 --- /dev/null +++ b/reports/dataset_manifest.json @@ -0,0 +1,1326 @@ +{ + "configs": { + "enterococcus_clean_v2_host_assemblies": { + "columns": [ + "assembly_accession", + "sequence_db_assembly_accession", + "sequence_db_source", + "primary_evidence_assembly_accession", + "evidence_assembly_accessions", + "evidence_sources", + "manifest_match_types", + "n_evidence_assembly_accessions", + "taxid", + "organism_name", + "source_db", + "assembly_level", + "target_group", + "enterococcus_match_evidence", + "n_representative_plasmids", + "n_member_plasmids", + "n_link_rows", + "chunk_id", + "chunk_path", + "n_rows", + "n_plasmid_rows", + "n_non_plasmid_rows", + "n_bp", + "in_sequence_db", + "genus_taxid", + "host_taxa_id", + "non_plasmid_contigs", + "non_plasmid_bp", + "has_non_plasmid_contigs" + ], + "config_name": "enterococcus_clean_v2_host_assemblies", + "contains_sequence_column": false, + "files": [ + { + "bytes": 60839, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_host_assemblies/train-00000.parquet", + "rows": 1497 + } + ], + "rows": 1497 + }, + "enterococcus_clean_v2_host_contigs": { + "columns": [ + "assembly_accession", + "sequence_id", + "new_contig_id", + "original_contig_id", + "source_contig_id", + "sampler_contig_id", + "seq_length", + "chunk_path" + ], + "config_name": "enterococcus_clean_v2_host_contigs", + "contains_sequence_column": false, + "files": [ + { + "bytes": 108719, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_host_contigs/train-00000.parquet", + "rows": 4530 + } + ], + "rows": 4530 + }, + "enterococcus_clean_v2_plasmid_to_assembly_links": { + "columns": [ + "cluster_id", + "representative_plasmid_id", + "member_plasmid_id", + "member_is_representative", + "assembly_accession", + "plasmid_accession", + "assembly_source", + "source_db", + "organism_name", + "taxid", + "target_group", + "assembly_level", + "seq_length", + "chr_name", + "sequence_name", + "refseq_seq_accession", + "genbank_seq_accession", + "accession_class", + "molecule_type", + "plasmid_evidence_fields", + "plasmid_evidence_terms", + "ftp_path", + "assembly_unit", + "role", + "gc_percent", + "ucsc_style_name", + "unlocalized_count", + "assembly_unplaced_count", + "source_batch_id", + "source_requested_accession", + "source_raw_file", + "plasmid_confidence", + "plasmid_heuristic_version", + "has_refseq", + "has_genbank", + "assembly_source_priority", + "_source_link_row", + "paired_assembly_accession", + "assembly_pair_key", + "refseq_assembly_accession", + "genbank_assembly_accession", + "enterococcus_genus_taxid", + "enterococcus_match_evidence", + "sequence_db_assembly_accession", + "manifest_match_type", + "requested_source", + "sequence_db_source" + ], + "config_name": "enterococcus_clean_v2_plasmid_to_assembly_links", + "contains_sequence_column": false, + "files": [ + { + "bytes": 333285, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_plasmid_to_assembly_links/train-00000.parquet", + "rows": 7916 + } + ], + "rows": 7916 + }, + "enterococcus_clean_v2_plasmids": { + "columns": [ + "plasmid_id", + "seq_length", + "fasta_id", + "cluster_id", + "cluster_size", + "sequence_md5", + "n_member_assemblies", + "n_unique_assemblies", + "n_member_assembly_link_rows", + "filename", + "orientation", + "topology", + "labels", + "raw_label", + "genus_taxid", + "host_genus_taxid", + "sequence_id", + "plasmid_accession", + "refseq_seq_accession", + "genbank_seq_accession", + "organism_name", + "taxid", + "source_db", + "assembly_accession", + "refseq_assembly_accession", + "genbank_assembly_accession", + "filter_reasons", + "has_high_quality_chromosome_hit", + "n_hq_chromosome_contigs", + "n_hq_chromosome_assemblies", + "n_near_complete_chromosome_contigs", + "n_near_complete_chromosome_assemblies", + "is_excluded" + ], + "config_name": "enterococcus_clean_v2_plasmids", + "contains_sequence_column": false, + "files": [ + { + "bytes": 235338, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_plasmids/train-00000.parquet", + "rows": 2519 + } + ], + "rows": 2519 + }, + "enterococcus_clean_v2_segments": { + "columns": [ + "segment_id", + "sequence_id", + "source_segment_id", + "labels", + "segment", + "segment_length", + "strand", + "source_type", + "source_id", + "plasmid_id", + "assembly_accession", + "sequence_db_assembly_accession", + "evidence_assembly_accessions", + "original_contig_id", + "new_contig_id", + "segment_start", + "segment_end", + "source_seq_length", + "seq_length", + "genus_taxid", + "host_genus_taxid", + "raw_label", + "orientation", + "filtered_by_plasmid", + "best_plasmid_id", + "best_plasmid_qcov", + "best_plasmid_pid", + "best_plasmid_cov_bp", + "best_plasmid_aln_bp", + "best_plasmid_length", + "host_minimap_aligned", + "n_paf_records", + "best_plasmid_id_ignore_top10", + "best_plasmid_qcov_ignore_top10", + "best_plasmid_pid_ignore_top10", + "best_plasmid_cov_bp_ignore_top10", + "best_plasmid_aln_bp_ignore_top10", + "filtered_by_plasmid_ignore_top10", + "recoverable_if_ignore_top10", + "still_filtered_if_ignore_top10", + "newly_filtered_if_ignore_top10", + "host_segment_id", + "host_candidate_id", + "training_eligible_current_clean", + "is_problematic_segment", + "problematic_reasons", + "problematic_side" + ], + "config_name": "enterococcus_clean_v2_segments", + "contains_sequence_column": true, + "counts": { + "host_filtered_by_plasmid_rows": 27417, + "host_rows": 728720, + "plasmid_rows": 182180, + "plasmid_segment_stats": { + "filtered_by_plasmid_counts": { + "False": 182180 + }, + "label_counts": { + "1": 182180 + }, + "problematic_counts": { + "False": 182180 + }, + "rows": 182180, + "sequence_id_max": 2518, + "sequence_id_min": 0, + "sequence_id_unique": 2519, + "training_eligible_current_clean_counts": { + "True": 182180 + } + }, + "segment_id_contiguous": true, + "segment_id_max": 910899, + "segment_id_min": 0, + "sequence_id_contiguous": true, + "sequence_id_max": 5132, + "sequence_id_min": 0, + "sequence_id_unique": 5133, + "training_eligible_current_clean_rows": 883483 + }, + "files": [ + { + "bytes": 109564146, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00000.parquet", + "rows": 100000 + }, + { + "bytes": 90006778, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00001.parquet", + "rows": 82180 + }, + { + "bytes": 2373378, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00002.parquet", + "rows": 1960 + }, + { + "bytes": 1213757, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00003.parquet", + "rows": 980 + }, + { + "bytes": 1416889, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00004.parquet", + "rows": 1126 + }, + { + "bytes": 1204759, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00005.parquet", + "rows": 980 + }, + { + "bytes": 2110091, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00006.parquet", + "rows": 1706 + }, + { + "bytes": 1218968, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00007.parquet", + "rows": 986 + }, + { + "bytes": 573961, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00008.parquet", + "rows": 444 + }, + { + "bytes": 647219, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00009.parquet", + "rows": 530 + }, + { + "bytes": 564846, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00010.parquet", + "rows": 444 + }, + { + "bytes": 616671, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00011.parquet", + "rows": 492 + }, + { + "bytes": 3042227, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00012.parquet", + "rows": 2498 + }, + { + "bytes": 3021135, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00013.parquet", + "rows": 2460 + }, + { + "bytes": 2236812, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00014.parquet", + "rows": 1824 + }, + { + "bytes": 661402, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00015.parquet", + "rows": 526 + }, + { + "bytes": 13454178, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00016.parquet", + "rows": 11126 + }, + { + "bytes": 3058203, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00017.parquet", + "rows": 2480 + }, + { + "bytes": 10500639, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00018.parquet", + "rows": 8634 + }, + { + "bytes": 12927528, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00019.parquet", + "rows": 10658 + }, + { + "bytes": 56781188, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00020.parquet", + "rows": 47026 + }, + { + "bytes": 1696766, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00021.parquet", + "rows": 1372 + }, + { + "bytes": 3530526, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00022.parquet", + "rows": 2886 + }, + { + "bytes": 632883, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00023.parquet", + "rows": 500 + }, + { + "bytes": 133497758, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00024.parquet", + "rows": 110812 + }, + { + "bytes": 4245360, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00025.parquet", + "rows": 3468 + }, + { + "bytes": 6682085, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00026.parquet", + "rows": 5480 + }, + { + "bytes": 77571274, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00027.parquet", + "rows": 64272 + }, + { + "bytes": 5391814, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00028.parquet", + "rows": 4432 + }, + { + "bytes": 5427005, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00029.parquet", + "rows": 4464 + }, + { + "bytes": 504338, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00030.parquet", + "rows": 394 + }, + { + "bytes": 631439, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00031.parquet", + "rows": 502 + }, + { + "bytes": 563100, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00032.parquet", + "rows": 438 + }, + { + "bytes": 3568340, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00033.parquet", + "rows": 2920 + }, + { + "bytes": 703035, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00034.parquet", + "rows": 550 + }, + { + "bytes": 12105591, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00035.parquet", + "rows": 10088 + }, + { + "bytes": 1197983, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00036.parquet", + "rows": 970 + }, + { + "bytes": 2384533, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00037.parquet", + "rows": 1948 + }, + { + "bytes": 1856809, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00038.parquet", + "rows": 1500 + }, + { + "bytes": 1792647, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00039.parquet", + "rows": 1440 + }, + { + "bytes": 1188146, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00040.parquet", + "rows": 964 + }, + { + "bytes": 2949785, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00041.parquet", + "rows": 2414 + }, + { + "bytes": 603182, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00042.parquet", + "rows": 468 + }, + { + "bytes": 8312800, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00043.parquet", + "rows": 6864 + }, + { + "bytes": 1182718, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00044.parquet", + "rows": 958 + }, + { + "bytes": 3675853, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00045.parquet", + "rows": 3016 + }, + { + "bytes": 623467, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00046.parquet", + "rows": 490 + }, + { + "bytes": 1433526, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00047.parquet", + "rows": 1158 + }, + { + "bytes": 2486977, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00048.parquet", + "rows": 2024 + }, + { + "bytes": 1816460, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00049.parquet", + "rows": 1470 + }, + { + "bytes": 6754701, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00050.parquet", + "rows": 5546 + }, + { + "bytes": 4003784, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00051.parquet", + "rows": 3268 + }, + { + "bytes": 5918861, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00052.parquet", + "rows": 4870 + }, + { + "bytes": 1218467, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00053.parquet", + "rows": 984 + }, + { + "bytes": 2390602, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00054.parquet", + "rows": 1926 + }, + { + "bytes": 567332, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00055.parquet", + "rows": 442 + }, + { + "bytes": 1441534, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00056.parquet", + "rows": 1148 + }, + { + "bytes": 4040153, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00057.parquet", + "rows": 3302 + }, + { + "bytes": 577957, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00058.parquet", + "rows": 464 + }, + { + "bytes": 2317870, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00059.parquet", + "rows": 1884 + }, + { + "bytes": 8174971, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00060.parquet", + "rows": 6692 + }, + { + "bytes": 4963743, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00061.parquet", + "rows": 4076 + }, + { + "bytes": 7137904, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00062.parquet", + "rows": 5852 + }, + { + "bytes": 1784114, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00063.parquet", + "rows": 1434 + }, + { + "bytes": 3213832, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00064.parquet", + "rows": 2604 + }, + { + "bytes": 2552029, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00065.parquet", + "rows": 2180 + }, + { + "bytes": 3515753, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00066.parquet", + "rows": 2890 + }, + { + "bytes": 2816065, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00067.parquet", + "rows": 2312 + }, + { + "bytes": 6314967, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00068.parquet", + "rows": 5214 + }, + { + "bytes": 1289227, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00069.parquet", + "rows": 1030 + }, + { + "bytes": 5615710, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00070.parquet", + "rows": 4616 + }, + { + "bytes": 2676322, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00071.parquet", + "rows": 2162 + }, + { + "bytes": 2330704, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00072.parquet", + "rows": 1902 + }, + { + "bytes": 12050613, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00073.parquet", + "rows": 9938 + }, + { + "bytes": 14584739, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00074.parquet", + "rows": 12008 + }, + { + "bytes": 1219318, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00075.parquet", + "rows": 978 + }, + { + "bytes": 2323453, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00076.parquet", + "rows": 1912 + }, + { + "bytes": 5843805, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00077.parquet", + "rows": 4796 + }, + { + "bytes": 5560944, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00078.parquet", + "rows": 4568 + }, + { + "bytes": 1307545, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00079.parquet", + "rows": 1050 + }, + { + "bytes": 6124214, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00080.parquet", + "rows": 5028 + }, + { + "bytes": 2713892, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00081.parquet", + "rows": 2220 + }, + { + "bytes": 2993226, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00082.parquet", + "rows": 2424 + }, + { + "bytes": 4668737, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00083.parquet", + "rows": 3842 + }, + { + "bytes": 4750353, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00084.parquet", + "rows": 3902 + }, + { + "bytes": 1685952, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00085.parquet", + "rows": 1382 + }, + { + "bytes": 3720248, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00086.parquet", + "rows": 3034 + }, + { + "bytes": 5525389, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00087.parquet", + "rows": 4544 + }, + { + "bytes": 716665, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00088.parquet", + "rows": 554 + }, + { + "bytes": 9155050, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00089.parquet", + "rows": 7524 + }, + { + "bytes": 1934360, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00090.parquet", + "rows": 1558 + }, + { + "bytes": 1204954, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00091.parquet", + "rows": 982 + }, + { + "bytes": 23882330, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00092.parquet", + "rows": 19664 + }, + { + "bytes": 2376869, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00093.parquet", + "rows": 1946 + }, + { + "bytes": 1202009, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00094.parquet", + "rows": 972 + }, + { + "bytes": 570623, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00095.parquet", + "rows": 458 + }, + { + "bytes": 1179116, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00096.parquet", + "rows": 970 + }, + { + "bytes": 1952427, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00097.parquet", + "rows": 1578 + }, + { + "bytes": 10464975, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00098.parquet", + "rows": 8608 + }, + { + "bytes": 4660022, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00099.parquet", + "rows": 3836 + }, + { + "bytes": 1804695, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00100.parquet", + "rows": 1474 + }, + { + "bytes": 3244673, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00101.parquet", + "rows": 2640 + }, + { + "bytes": 18262476, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00102.parquet", + "rows": 15026 + }, + { + "bytes": 2265195, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00103.parquet", + "rows": 1842 + }, + { + "bytes": 1962341, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00104.parquet", + "rows": 1588 + }, + { + "bytes": 1757122, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00105.parquet", + "rows": 1426 + }, + { + "bytes": 1292256, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00106.parquet", + "rows": 1032 + }, + { + "bytes": 10626896, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00107.parquet", + "rows": 8752 + }, + { + "bytes": 3542690, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00108.parquet", + "rows": 2892 + }, + { + "bytes": 1773547, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00109.parquet", + "rows": 1440 + }, + { + "bytes": 6696206, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00110.parquet", + "rows": 5490 + }, + { + "bytes": 1119298, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00111.parquet", + "rows": 900 + }, + { + "bytes": 1700920, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00112.parquet", + "rows": 1388 + }, + { + "bytes": 699907, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00113.parquet", + "rows": 556 + }, + { + "bytes": 4287766, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00114.parquet", + "rows": 3502 + }, + { + "bytes": 3105177, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00115.parquet", + "rows": 2594 + }, + { + "bytes": 5307688, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00116.parquet", + "rows": 4360 + }, + { + "bytes": 2489808, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00117.parquet", + "rows": 2020 + }, + { + "bytes": 543718, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00118.parquet", + "rows": 436 + }, + { + "bytes": 5260960, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00119.parquet", + "rows": 4322 + }, + { + "bytes": 2269225, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00120.parquet", + "rows": 1850 + }, + { + "bytes": 3535273, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00121.parquet", + "rows": 2900 + }, + { + "bytes": 1157284, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00122.parquet", + "rows": 934 + }, + { + "bytes": 1187733, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00123.parquet", + "rows": 962 + }, + { + "bytes": 5932002, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00124.parquet", + "rows": 4904 + }, + { + "bytes": 633823, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00125.parquet", + "rows": 498 + }, + { + "bytes": 1705713, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00126.parquet", + "rows": 1404 + }, + { + "bytes": 4684095, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00127.parquet", + "rows": 3864 + }, + { + "bytes": 2335480, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00128.parquet", + "rows": 1926 + }, + { + "bytes": 547741, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00129.parquet", + "rows": 438 + }, + { + "bytes": 636059, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00130.parquet", + "rows": 492 + }, + { + "bytes": 2280833, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00131.parquet", + "rows": 1842 + }, + { + "bytes": 589609, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00132.parquet", + "rows": 470 + }, + { + "bytes": 1173443, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00133.parquet", + "rows": 946 + }, + { + "bytes": 610129, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00134.parquet", + "rows": 476 + }, + { + "bytes": 1195346, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00135.parquet", + "rows": 964 + }, + { + "bytes": 7347243, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00136.parquet", + "rows": 6054 + }, + { + "bytes": 1214060, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00137.parquet", + "rows": 986 + }, + { + "bytes": 2009889, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00138.parquet", + "rows": 1620 + }, + { + "bytes": 1163251, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00139.parquet", + "rows": 942 + }, + { + "bytes": 609816, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00140.parquet", + "rows": 482 + }, + { + "bytes": 20395938, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00141.parquet", + "rows": 16776 + }, + { + "bytes": 27215409, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00142.parquet", + "rows": 22460 + }, + { + "bytes": 3557275, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00143.parquet", + "rows": 2922 + }, + { + "bytes": 1158826, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00144.parquet", + "rows": 938 + }, + { + "bytes": 2278869, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00145.parquet", + "rows": 1862 + }, + { + "bytes": 2931846, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00146.parquet", + "rows": 2378 + }, + { + "bytes": 6425179, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00147.parquet", + "rows": 5280 + }, + { + "bytes": 3764001, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00148.parquet", + "rows": 3082 + }, + { + "bytes": 7086230, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00149.parquet", + "rows": 5840 + }, + { + "bytes": 4676922, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00150.parquet", + "rows": 3844 + }, + { + "bytes": 1866475, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00151.parquet", + "rows": 1510 + }, + { + "bytes": 2301940, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00152.parquet", + "rows": 1876 + }, + { + "bytes": 1249271, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00153.parquet", + "rows": 1006 + }, + { + "bytes": 1247089, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00154.parquet", + "rows": 994 + }, + { + "bytes": 590270, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00155.parquet", + "rows": 462 + }, + { + "bytes": 630131, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00156.parquet", + "rows": 498 + }, + { + "bytes": 3767640, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00157.parquet", + "rows": 3076 + }, + { + "bytes": 3523506, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00158.parquet", + "rows": 2898 + }, + { + "bytes": 4853894, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00159.parquet", + "rows": 3980 + }, + { + "bytes": 1161712, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00160.parquet", + "rows": 938 + }, + { + "bytes": 2259497, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00161.parquet", + "rows": 1842 + }, + { + "bytes": 1838843, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00162.parquet", + "rows": 1486 + }, + { + "bytes": 514625, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00163.parquet", + "rows": 398 + }, + { + "bytes": 1346957, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00164.parquet", + "rows": 1074 + }, + { + "bytes": 3633079, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00165.parquet", + "rows": 2970 + }, + { + "bytes": 1213627, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00166.parquet", + "rows": 974 + }, + { + "bytes": 27353472, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00167.parquet", + "rows": 22584 + }, + { + "bytes": 3597966, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00168.parquet", + "rows": 2966 + }, + { + "bytes": 1172584, + "path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export/data/enterococcus_clean_v2_segments/train-00169.parquet", + "rows": 956 + } + ], + "rows": 910900 + } + }, + "counts": { + "host_assemblies_with_non_plasmid_contigs": 1497, + "host_filtered_by_plasmid_rows": 27417, + "host_rows": 728720, + "plasmid_rows": 182180, + "selected_plasmids": 2519, + "sequence_id_max": 5132, + "sequence_id_min": 0, + "sequence_id_unique": 5133, + "total_segment_rows": 910900, + "training_eligible_current_clean_rows": 883483 + }, + "created_at": "2026-07-09T11:43:33.179920+00:00", + "export_root": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/hf_dataset_export", + "inputs": { + "final_training_dataset_summary": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/final_training_dataset_summary.json", + "host_assemblies": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/selected/enterococcus_host_assemblies.tsv", + "host_contigs": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/selected/enterococcus_host_contigs.parquet", + "host_tagged_dir": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_tagged_parquet", + "minimap_filtering_summary": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/minimap_filtering_summary.json", + "plasmid_segments": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/plasmid_segments_fullmeta.feather", + "plasmid_to_assembly_links": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/selected/enterococcus_clean_v2_nr_assembly_links_resolved.tsv", + "plasmids": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/selected/enterococcus_clean_v2_nr_representatives.tsv", + "sampling_summary": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/sampling_summary.json" + }, + "repo_id": "neuralbioinfo/enterococcus-plasmid-training", + "sample_root": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000", + "source_reports": { + "final_training_dataset_summary": { + "counts": { + "clean_host_to_plasmid_ratio": 3.8495059830936436, + "host_candidate_rows": 728720, + "host_clean_rows": 701303, + "host_filtered_by_plasmid_rows": 27417, + "host_filtered_fraction": 0.03762350422658909, + "plasmid_rows": 182180, + "training_rows": 883483 + }, + "created_at": "2026-07-07T12:05:40.637997+00:00", + "inputs": { + "plasmid_segments": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/plasmid_segments_fullmeta.feather", + "tagged_host_dir": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_tagged_parquet" + }, + "outputs": { + "clean_host_dir": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_clean_parquet", + "manifest": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/training_segments_manifest.tsv", + "training_dir": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/training_segments.parquet" + } + }, + "minimap_filtering_summary": { + "counts": { + "assemblies_filtered_fraction_ge_0p50": 0, + "assemblies_filtered_fraction_ge_0p80": 0, + "assemblies_with_filtered_segments": 1399, + "contigs_filtered_fraction_ge_0p80": 103, + "contigs_with_filtered_segments": 1604, + "ignore_top10_aligned_host_rows": 265923, + "ignore_top10_filtered_host_rows": 14792, + "newly_filtered_host_rows_if_ignore_top10": 10, + "normal_aligned_host_rows": 307400, + "normal_filtered_host_rows": 27417, + "recovered_host_rows_if_ignore_top10": 12635, + "still_filtered_host_rows_if_ignore_top10": 14782, + "top_dangerous_plasmids_reported": 10, + "total_host_rows": 728720 + }, + "created_at": "2026-07-07T12:04:21.205979+00:00", + "ignore_top10_paf_stats": { + "excluded_target_ids": 10, + "filtered_fraction_aligned": 0.055625124566133805, + "lines_malformed": 0, + "lines_target_excluded": 187009, + "lines_target_length_filtered": 0, + "lines_target_missing_metadata": 0, + "lines_total": 5494926, + "lines_used": 5307917, + "min_aligned_bp": 3500, + "min_pid": 0.95, + "min_target_length": 1000, + "paf_path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/minimap/actL4000/host_segments_vs_enterococcus_plasmids.sorted.paf", + "qcov_threshold": 0.95, + "queries_aligned_after_length_filter": 265923, + "queries_filtered_by_plasmid": 14792, + "query_groups_seen_in_paf": 307400 + }, + "inputs": { + "host_manifest": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_candidates_manifest.tsv", + "host_parquet_dir": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_candidates_parquet", + "plasmid_metadata": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/fasta/enterococcus_clean_v2_nr_plasmids_metadata.tsv", + "sorted_paf": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/minimap/actL4000/host_segments_vs_enterococcus_plasmids.sorted.paf" + }, + "normal_paf_stats": { + "excluded_target_ids": 0, + "filtered_fraction_aligned": 0.08918998048145739, + "lines_malformed": 0, + "lines_target_excluded": 0, + "lines_target_length_filtered": 0, + "lines_target_missing_metadata": 0, + "lines_total": 5494926, + "lines_used": 5494926, + "min_aligned_bp": 3500, + "min_pid": 0.95, + "min_target_length": 1000, + "paf_path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/minimap/actL4000/host_segments_vs_enterococcus_plasmids.sorted.paf", + "qcov_threshold": 0.95, + "queries_aligned_after_length_filter": 307400, + "queries_filtered_by_plasmid": 27417, + "query_groups_seen_in_paf": 307400 + }, + "outputs": { + "host_minimap_hits": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/minimap/actL4000/host_minimap_hits.feather", + "host_minimap_hits_ignore_top10": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/minimap/actL4000/host_minimap_hits_ignore_top10.feather", + "host_plasmid_overlap_assessment": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/host_plasmid_overlap_assessment.tsv", + "host_plasmid_overlap_by_assembly": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/host_plasmid_overlap_by_assembly.tsv", + "host_plasmid_overlap_by_contig": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/host_plasmid_overlap_by_contig.tsv", + "host_plasmid_overlap_by_plasmid_length_bin": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/host_plasmid_overlap_by_plasmid_length_bin.tsv", + "tagged_host_dir": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_tagged_parquet", + "top10_ignore_comparison": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/top10_ignore_comparison.tsv", + "top_plasmid_hit_drivers": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/top_plasmid_hit_drivers.tsv" + }, + "parameters": { + "max_host_parts": null, + "min_aligned_bp": 3500, + "min_pid": 0.95, + "min_target_length": 1000, + "qcov_threshold": 0.95, + "top_dangerous_count": 10 + } + }, + "sampling_summary": { + "counts": { + "descendant_taxid_count": 3464, + "n_enterococcus_link_rows_used": 7937, + "n_host_assemblies_in_sequence_db": 1497, + "n_host_assemblies_linked": 1497, + "n_host_assemblies_with_non_plasmid_contigs": 1497, + "n_host_assembly_evidence_accessions_linked": 2382, + "n_host_assembly_evidence_accessions_resolved": 2376, + "n_host_assembly_evidence_accessions_unresolved": 6, + "n_host_contigs": 4530, + "n_host_non_plasmid_bp": 4266416394, + "n_host_parquet_parts": 168, + "n_host_sampling_failure_rows": 0, + "n_host_segment_rows": 728720, + "n_link_rows_after_taxon_filter": 8152, + "n_link_rows_before_taxon_filter": 220095, + "n_plasmid_segment_rows": 182180, + "n_representatives_after_taxon_filter": 2613, + "n_representatives_before_clean_filter": 2613, + "n_representatives_excluded_by_clean_filter": 94, + "n_representatives_sampled": 2519, + "target_host_rows": 728720, + "taxonomy_evidence_columns": [ + "taxid" + ] + }, + "created_at": "2026-07-07T11:55:32.195788+00:00", + "inputs": { + "assembly_metadata": [ + "/project/c_evolm/training_datasets/phage_db/NCBI/sequence_reports/full/analysis_high_confidence/high_confidence_plasmid_assembly_links.tsv", + "/project/c_evolm/training_datasets/phage_db/NCBI/sequence_reports/full/analysis/high_confidence_plasmid_assembly_links.tsv" + ], + "nr_links": "/project/c_evolm/training_datasets/phage_db/NCBI/plasmid_nr/clean_v2_len2k_4mb_nochrom_broadhq20/nr/tables/nr_plasmid_to_assembly_links.feather", + "nr_reps": "/project/c_evolm/training_datasets/phage_db/NCBI/plasmid_nr/clean_v2_len2k_4mb_nochrom_broadhq20/nr/tables/all_nr_plasmids.feather", + "sequence_db_chunks": "/scratch/c_evolm/plasmids/genome_downloads/high_confidence_plasmid_assemblies/sequence_db/parquet/chunks", + "sequence_db_manifest": "/scratch/c_evolm/plasmids/genome_downloads/high_confidence_plasmid_assemblies/sequence_db/metadata/assembly_manifest.parquet", + "taxonomy_dir": "/project/c_evolm/training_datasets/phage_db/ncbi_taxonomy" + }, + "outputs": { + "excluded_representatives": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/selected/excluded_plasmid_representatives.tsv", + "host_assemblies": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/selected/enterococcus_host_assemblies.tsv", + "host_sampling_failures": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/host_sampling_failures.tsv", + "host_sampling_stats": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/host_sampling_stats.tsv", + "host_segments_manifest": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_candidates_manifest.tsv", + "host_segments_parquet_dir": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_candidates_parquet", + "plasmid_filter_summary": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/plasmid_filter_summary.tsv", + "plasmid_segments": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/plasmid_segments_fullmeta.feather", + "reference_fasta": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/fasta/enterococcus_clean_v2_nr_plasmids.fasta", + "reference_metadata": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/fasta/enterococcus_clean_v2_nr_plasmids_metadata.tsv", + "selected_links": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/selected/enterococcus_clean_v2_nr_assembly_links.tsv", + "selected_representatives": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/selected/enterococcus_clean_v2_nr_representatives.tsv" + }, + "parameters": { + "allow_sequence_db_version_fallback": false, + "chrom_hq_hit_threshold": 5, + "genus_taxid": 1350, + "host_ratio": 4, + "host_workers": 16, + "limit_assemblies": null, + "limit_representatives": null, + "max_plasmid_length": 400000, + "min_length": 200, + "min_plasmid_length": 1000, + "near_complete_hit_threshold": 2, + "plasmid_coverage": 2.0, + "plasmid_jobs": 16, + "seed": 42, + "segment_length": 4000, + "small_chrom_qc": "/project/c_evolm/training_datasets/phage_db/NCBI/chromosome_containment_qc/small_nr_plasmids_1kb_10kb_vs_complete_genome_chromosomes/tables/small_nr_plasmid_chromosome_hit_summary.tsv", + "small_cluster_max_size": 5 + } + } + }, + "split": "train", + "validation": { + "no_segment_rows_dropped": true, + "only_main_segment_config_has_sequence_column": true, + "problematic_rows_retained_and_tagged": true, + "segment_id_unique_integer_contiguous_by_construction": true, + "sequence_id_contiguous_by_construction": true, + "sequence_id_source_sequence_grouping": true + } +} diff --git a/reports/final_training_dataset_summary.json b/reports/final_training_dataset_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..744735e42ad25bf6dc8cfaa13e3e32ee8d2c2450 --- /dev/null +++ b/reports/final_training_dataset_summary.json @@ -0,0 +1,21 @@ +{ + "counts": { + "clean_host_to_plasmid_ratio": 3.8495059830936436, + "host_candidate_rows": 728720, + "host_clean_rows": 701303, + "host_filtered_by_plasmid_rows": 27417, + "host_filtered_fraction": 0.03762350422658909, + "plasmid_rows": 182180, + "training_rows": 883483 + }, + "created_at": "2026-07-07T12:05:40.637997+00:00", + "inputs": { + "plasmid_segments": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/plasmid_segments_fullmeta.feather", + "tagged_host_dir": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_tagged_parquet" + }, + "outputs": { + "clean_host_dir": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_clean_parquet", + "manifest": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/training_segments_manifest.tsv", + "training_dir": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/training_segments.parquet" + } +} diff --git a/reports/minimap_filtering_summary.json b/reports/minimap_filtering_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..cdd3630b0f3f5a93345b7082fb197ab85bb8acc0 --- /dev/null +++ b/reports/minimap_filtering_summary.json @@ -0,0 +1,80 @@ +{ + "counts": { + "assemblies_filtered_fraction_ge_0p50": 0, + "assemblies_filtered_fraction_ge_0p80": 0, + "assemblies_with_filtered_segments": 1399, + "contigs_filtered_fraction_ge_0p80": 103, + "contigs_with_filtered_segments": 1604, + "ignore_top10_aligned_host_rows": 265923, + "ignore_top10_filtered_host_rows": 14792, + "newly_filtered_host_rows_if_ignore_top10": 10, + "normal_aligned_host_rows": 307400, + "normal_filtered_host_rows": 27417, + "recovered_host_rows_if_ignore_top10": 12635, + "still_filtered_host_rows_if_ignore_top10": 14782, + "top_dangerous_plasmids_reported": 10, + "total_host_rows": 728720 + }, + "created_at": "2026-07-07T12:04:21.205979+00:00", + "ignore_top10_paf_stats": { + "excluded_target_ids": 10, + "filtered_fraction_aligned": 0.055625124566133805, + "lines_malformed": 0, + "lines_target_excluded": 187009, + "lines_target_length_filtered": 0, + "lines_target_missing_metadata": 0, + "lines_total": 5494926, + "lines_used": 5307917, + "min_aligned_bp": 3500, + "min_pid": 0.95, + "min_target_length": 1000, + "paf_path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/minimap/actL4000/host_segments_vs_enterococcus_plasmids.sorted.paf", + "qcov_threshold": 0.95, + "queries_aligned_after_length_filter": 265923, + "queries_filtered_by_plasmid": 14792, + "query_groups_seen_in_paf": 307400 + }, + "inputs": { + "host_manifest": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_candidates_manifest.tsv", + "host_parquet_dir": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_candidates_parquet", + "plasmid_metadata": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/fasta/enterococcus_clean_v2_nr_plasmids_metadata.tsv", + "sorted_paf": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/minimap/actL4000/host_segments_vs_enterococcus_plasmids.sorted.paf" + }, + "normal_paf_stats": { + "excluded_target_ids": 0, + "filtered_fraction_aligned": 0.08918998048145739, + "lines_malformed": 0, + "lines_target_excluded": 0, + "lines_target_length_filtered": 0, + "lines_target_missing_metadata": 0, + "lines_total": 5494926, + "lines_used": 5494926, + "min_aligned_bp": 3500, + "min_pid": 0.95, + "min_target_length": 1000, + "paf_path": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/minimap/actL4000/host_segments_vs_enterococcus_plasmids.sorted.paf", + "qcov_threshold": 0.95, + "queries_aligned_after_length_filter": 307400, + "queries_filtered_by_plasmid": 27417, + "query_groups_seen_in_paf": 307400 + }, + "outputs": { + "host_minimap_hits": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/minimap/actL4000/host_minimap_hits.feather", + "host_minimap_hits_ignore_top10": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/minimap/actL4000/host_minimap_hits_ignore_top10.feather", + "host_plasmid_overlap_assessment": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/host_plasmid_overlap_assessment.tsv", + "host_plasmid_overlap_by_assembly": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/host_plasmid_overlap_by_assembly.tsv", + "host_plasmid_overlap_by_contig": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/host_plasmid_overlap_by_contig.tsv", + "host_plasmid_overlap_by_plasmid_length_bin": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/host_plasmid_overlap_by_plasmid_length_bin.tsv", + "tagged_host_dir": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_tagged_parquet", + "top10_ignore_comparison": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/top10_ignore_comparison.tsv", + "top_plasmid_hit_drivers": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/top_plasmid_hit_drivers.tsv" + }, + "parameters": { + "max_host_parts": null, + "min_aligned_bp": 3500, + "min_pid": 0.95, + "min_target_length": 1000, + "qcov_threshold": 0.95, + "top_dangerous_count": 10 + } +} diff --git a/reports/sampling_summary.json b/reports/sampling_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..c3a0637b5b7cddcfdb44e13e2cb1661bbded4447 --- /dev/null +++ b/reports/sampling_summary.json @@ -0,0 +1,73 @@ +{ + "counts": { + "descendant_taxid_count": 3464, + "n_enterococcus_link_rows_used": 7937, + "n_host_assemblies_in_sequence_db": 1497, + "n_host_assemblies_linked": 1497, + "n_host_assemblies_with_non_plasmid_contigs": 1497, + "n_host_assembly_evidence_accessions_linked": 2382, + "n_host_assembly_evidence_accessions_resolved": 2376, + "n_host_assembly_evidence_accessions_unresolved": 6, + "n_host_contigs": 4530, + "n_host_non_plasmid_bp": 4266416394, + "n_host_parquet_parts": 168, + "n_host_sampling_failure_rows": 0, + "n_host_segment_rows": 728720, + "n_link_rows_after_taxon_filter": 8152, + "n_link_rows_before_taxon_filter": 220095, + "n_plasmid_segment_rows": 182180, + "n_representatives_after_taxon_filter": 2613, + "n_representatives_before_clean_filter": 2613, + "n_representatives_excluded_by_clean_filter": 94, + "n_representatives_sampled": 2519, + "target_host_rows": 728720, + "taxonomy_evidence_columns": [ + "taxid" + ] + }, + "created_at": "2026-07-07T11:55:32.195788+00:00", + "inputs": { + "assembly_metadata": [ + "/project/c_evolm/training_datasets/phage_db/NCBI/sequence_reports/full/analysis_high_confidence/high_confidence_plasmid_assembly_links.tsv", + "/project/c_evolm/training_datasets/phage_db/NCBI/sequence_reports/full/analysis/high_confidence_plasmid_assembly_links.tsv" + ], + "nr_links": "/project/c_evolm/training_datasets/phage_db/NCBI/plasmid_nr/clean_v2_len2k_4mb_nochrom_broadhq20/nr/tables/nr_plasmid_to_assembly_links.feather", + "nr_reps": "/project/c_evolm/training_datasets/phage_db/NCBI/plasmid_nr/clean_v2_len2k_4mb_nochrom_broadhq20/nr/tables/all_nr_plasmids.feather", + "sequence_db_chunks": "/scratch/c_evolm/plasmids/genome_downloads/high_confidence_plasmid_assemblies/sequence_db/parquet/chunks", + "sequence_db_manifest": "/scratch/c_evolm/plasmids/genome_downloads/high_confidence_plasmid_assemblies/sequence_db/metadata/assembly_manifest.parquet", + "taxonomy_dir": "/project/c_evolm/training_datasets/phage_db/ncbi_taxonomy" + }, + "outputs": { + "excluded_representatives": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/selected/excluded_plasmid_representatives.tsv", + "host_assemblies": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/selected/enterococcus_host_assemblies.tsv", + "host_sampling_failures": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/host_sampling_failures.tsv", + "host_sampling_stats": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/host_sampling_stats.tsv", + "host_segments_manifest": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_candidates_manifest.tsv", + "host_segments_parquet_dir": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/host_segments_candidates_parquet", + "plasmid_filter_summary": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/qc/plasmid_filter_summary.tsv", + "plasmid_segments": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/segments/actL4000/plasmid_segments_fullmeta.feather", + "reference_fasta": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/fasta/enterococcus_clean_v2_nr_plasmids.fasta", + "reference_metadata": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/fasta/enterococcus_clean_v2_nr_plasmids_metadata.tsv", + "selected_links": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/selected/enterococcus_clean_v2_nr_assembly_links.tsv", + "selected_representatives": "/project/c_evolm/training_datasets/phage_db/NCBI/TrainingSamples/ncbi_enterococcus_clean_v2_nr_reps_len1k_400k_nochr_cov2_h4_actL4000/selected/enterococcus_clean_v2_nr_representatives.tsv" + }, + "parameters": { + "allow_sequence_db_version_fallback": false, + "chrom_hq_hit_threshold": 5, + "genus_taxid": 1350, + "host_ratio": 4, + "host_workers": 16, + "limit_assemblies": null, + "limit_representatives": null, + "max_plasmid_length": 400000, + "min_length": 200, + "min_plasmid_length": 1000, + "near_complete_hit_threshold": 2, + "plasmid_coverage": 2.0, + "plasmid_jobs": 16, + "seed": 42, + "segment_length": 4000, + "small_chrom_qc": "/project/c_evolm/training_datasets/phage_db/NCBI/chromosome_containment_qc/small_nr_plasmids_1kb_10kb_vs_complete_genome_chromosomes/tables/small_nr_plasmid_chromosome_hit_summary.tsv", + "small_cluster_max_size": 5 + } +} diff --git a/reports/schema.json b/reports/schema.json new file mode 100644 index 0000000000000000000000000000000000000000..b79a1c2281ae02c4977989115de0dc1edcccca9a --- /dev/null +++ b/reports/schema.json @@ -0,0 +1,215 @@ +{ + "configs": { + "enterococcus_clean_v2_host_assemblies": { + "columns": [ + "assembly_accession", + "sequence_db_assembly_accession", + "sequence_db_source", + "primary_evidence_assembly_accession", + "evidence_assembly_accessions", + "evidence_sources", + "manifest_match_types", + "n_evidence_assembly_accessions", + "taxid", + "organism_name", + "source_db", + "assembly_level", + "target_group", + "enterococcus_match_evidence", + "n_representative_plasmids", + "n_member_plasmids", + "n_link_rows", + "chunk_id", + "chunk_path", + "n_rows", + "n_plasmid_rows", + "n_non_plasmid_rows", + "n_bp", + "in_sequence_db", + "genus_taxid", + "host_taxa_id", + "non_plasmid_contigs", + "non_plasmid_bp", + "has_non_plasmid_contigs" + ], + "contains_sequence_column": false, + "rows": 1497 + }, + "enterococcus_clean_v2_host_contigs": { + "columns": [ + "assembly_accession", + "sequence_id", + "new_contig_id", + "original_contig_id", + "source_contig_id", + "sampler_contig_id", + "seq_length", + "chunk_path" + ], + "contains_sequence_column": false, + "rows": 4530 + }, + "enterococcus_clean_v2_plasmid_to_assembly_links": { + "columns": [ + "cluster_id", + "representative_plasmid_id", + "member_plasmid_id", + "member_is_representative", + "assembly_accession", + "plasmid_accession", + "assembly_source", + "source_db", + "organism_name", + "taxid", + "target_group", + "assembly_level", + "seq_length", + "chr_name", + "sequence_name", + "refseq_seq_accession", + "genbank_seq_accession", + "accession_class", + "molecule_type", + "plasmid_evidence_fields", + "plasmid_evidence_terms", + "ftp_path", + "assembly_unit", + "role", + "gc_percent", + "ucsc_style_name", + "unlocalized_count", + "assembly_unplaced_count", + "source_batch_id", + "source_requested_accession", + "source_raw_file", + "plasmid_confidence", + "plasmid_heuristic_version", + "has_refseq", + "has_genbank", + "assembly_source_priority", + "_source_link_row", + "paired_assembly_accession", + "assembly_pair_key", + "refseq_assembly_accession", + "genbank_assembly_accession", + "enterococcus_genus_taxid", + "enterococcus_match_evidence", + "sequence_db_assembly_accession", + "manifest_match_type", + "requested_source", + "sequence_db_source" + ], + "contains_sequence_column": false, + "rows": 7916 + }, + "enterococcus_clean_v2_plasmids": { + "columns": [ + "plasmid_id", + "seq_length", + "fasta_id", + "cluster_id", + "cluster_size", + "sequence_md5", + "n_member_assemblies", + "n_unique_assemblies", + "n_member_assembly_link_rows", + "filename", + "orientation", + "topology", + "labels", + "raw_label", + "genus_taxid", + "host_genus_taxid", + "sequence_id", + "plasmid_accession", + "refseq_seq_accession", + "genbank_seq_accession", + "organism_name", + "taxid", + "source_db", + "assembly_accession", + "refseq_assembly_accession", + "genbank_assembly_accession", + "filter_reasons", + "has_high_quality_chromosome_hit", + "n_hq_chromosome_contigs", + "n_hq_chromosome_assemblies", + "n_near_complete_chromosome_contigs", + "n_near_complete_chromosome_assemblies", + "is_excluded" + ], + "contains_sequence_column": false, + "rows": 2519 + }, + "enterococcus_clean_v2_segments": { + "columns": [ + "segment_id", + "sequence_id", + "source_segment_id", + "labels", + "segment", + "segment_length", + "strand", + "source_type", + "source_id", + "plasmid_id", + "assembly_accession", + "sequence_db_assembly_accession", + "evidence_assembly_accessions", + "original_contig_id", + "new_contig_id", + "segment_start", + "segment_end", + "source_seq_length", + "seq_length", + "genus_taxid", + "host_genus_taxid", + "raw_label", + "orientation", + "filtered_by_plasmid", + "best_plasmid_id", + "best_plasmid_qcov", + "best_plasmid_pid", + "best_plasmid_cov_bp", + "best_plasmid_aln_bp", + "best_plasmid_length", + "host_minimap_aligned", + "n_paf_records", + "best_plasmid_id_ignore_top10", + "best_plasmid_qcov_ignore_top10", + "best_plasmid_pid_ignore_top10", + "best_plasmid_cov_bp_ignore_top10", + "best_plasmid_aln_bp_ignore_top10", + "filtered_by_plasmid_ignore_top10", + "recoverable_if_ignore_top10", + "still_filtered_if_ignore_top10", + "newly_filtered_if_ignore_top10", + "host_segment_id", + "host_candidate_id", + "training_eligible_current_clean", + "is_problematic_segment", + "problematic_reasons", + "problematic_side" + ], + "contains_sequence_column": true, + "rows": 910900 + } + }, + "created_at": "2026-07-09T11:43:33.321339+00:00", + "filter_semantics": { + "all_rows": "load the enterococcus_clean_v2_segments config without filtering", + "current_clean_training": "training_eligible_current_clean == True", + "flagged_host_segments": "source_type == 'host' and filtered_by_plasmid == True" + }, + "primary_key": { + "column": "segment_id", + "config": "enterococcus_clean_v2_segments", + "type": "int64" + }, + "source_sequence_key": { + "column": "sequence_id", + "config": "enterococcus_clean_v2_segments", + "semantics": "contiguous source-sequence grouping ID", + "type": "int64" + } +}