calmar: SEALS fold-0 fp16 ONNX DWI/ADC lesion model
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calmar/models/README.md
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# CALMaR lesion models
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## lnm-deepisles-seals-fold0-128-fp16.onnx
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DWI/TRACE + ADC acute ischaemic stroke lesion segmentation for CALMaR's
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editable lesion seed.
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- Source: SEALS, the nnU-Net v1 member of DeepISLES (ISLES'22 winner),
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fold 0 (`model_final_checkpoint.model`) from the DeepISLES weights,
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Zenodo record 14026715 (`stroke_ensemble_weights.7z`,
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md5 be5b6dfcd66b55c2e6dc6db9a5880f7f), Apache-2.0.
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- Paper: de la Rosa et al., "DeepISLES: a clinically validated ischemic
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stroke segmentation model from the ISLES'22 challenge", Nature
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Communications (2025).
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- Conversion: `apps/calmar/scripts/convert_seals_model.py` in
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github.com/neurodesk/webapps. Static 1x2x128x128x128 input
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(channel 0 = DWI/TRACE, channel 1 = ADC, 1 mm), output logits
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(background, lesion), opset 17, fp16 weights with fp32 inputs/outputs.
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- Inference: `apps/calmar/scripts/run_seals_onnx.py` (nnU-Net v1
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preprocessing, step-0.5 Gaussian sliding window, 8 mirrorings).
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- sha256 54c01314ea7ad26b092266ac6cb39bc9f35ac84d8983186af734f05b1cd1c329
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calmar/models/lnm-deepisles-seals-fold0-128-fp16.onnx
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version https://git-lfs.github.com/spec/v1
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oid sha256:54c01314ea7ad26b092266ac6cb39bc9f35ac84d8983186af734f05b1cd1c329
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size 62429252
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