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accession ambiguous_bases checkm_completeness checkm_contamination checkm_marker_count checkm_marker_lineage checkm_marker_set_count checkm_strain_heterogeneity coding_bases coding_density contig_count gc_count gc_percentage genome_size gtdb_genome_representative gtdb_representative gtdb_taxonomy gtdb_type_designation_ncbi_taxa gtdb_type_designation_ncbi_taxa_sources gtdb_type_species_of_genus l50_contigs l50_scaffolds longest_contig longest_scaffold lsu_23s_contig_len lsu_23s_count lsu_23s_length lsu_23s_query_id lsu_5s_contig_len lsu_5s_count lsu_5s_length lsu_5s_query_id lsu_silva_23s_blast_align_len lsu_silva_23s_blast_bitscore lsu_silva_23s_blast_evalue lsu_silva_23s_blast_perc_identity lsu_silva_23s_blast_subject_id lsu_silva_23s_taxonomy mean_contig_length mean_scaffold_length mimag_high_quality mimag_low_quality mimag_medium_quality n50_contigs n50_scaffolds ncbi_assembly_level ncbi_assembly_name ncbi_assembly_type ncbi_bioproject ncbi_biosample ncbi_contig_count ncbi_contig_n50 ncbi_country ncbi_date ncbi_genbank_assembly_accession ncbi_genome_category ncbi_genome_representation ncbi_isolate ncbi_isolation_source ncbi_lat_lon ncbi_molecule_count ncbi_ncrna_count ncbi_organism_name ncbi_protein_count ncbi_refseq_category ncbi_rrna_count ncbi_scaffold_count ncbi_scaffold_l50 ncbi_scaffold_n50 ncbi_scaffold_n75 ncbi_scaffold_n90 ncbi_seq_rel_date ncbi_spanned_gaps ncbi_species_taxid ncbi_ssu_count ncbi_strain_identifiers ncbi_submitter ncbi_taxid ncbi_taxonomy ncbi_taxonomy_unfiltered ncbi_total_gap_length ncbi_total_length ncbi_translation_table ncbi_trna_count ncbi_type_material_designation ncbi_ungapped_length ncbi_unspanned_gaps ncbi_wgs_master protein_count scaffold_count ssu_contig_len ssu_count ssu_gg_blast_align_len ssu_gg_blast_bitscore ssu_gg_blast_evalue ssu_gg_blast_perc_identity ssu_gg_blast_subject_id ssu_gg_taxonomy ssu_length ssu_query_id ssu_silva_blast_align_len ssu_silva_blast_bitscore ssu_silva_blast_evalue ssu_silva_blast_perc_identity ssu_silva_blast_subject_id ssu_silva_taxonomy total_gap_length trna_aa_count trna_count trna_selenocysteine_count
RS_GCF_003697165.2 0 99.97 0.39 1173 f__Enterobacteriaceae (UID5124) 336 0 4412779 87.6449749882518 2 2549864 50.6444502440398 5034834 RS_GCF_003697165.2 t d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli type strain of species LPSN t 1 1 4903501 4903501 4903501 7 2901 NZ_CP033092.2 4903501 7 356 NZ_CP033092.2-#7 2901 5358 0 100 CU928161.2768801.2771704 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia-Shigella;Escherichia coli S88 2517417 2517417 t f f 4903501 4903501 Complete Genome ASM369716v2 na PRJNA224116 SAMN10252913 none none none 2018-12-20 GCA_003697165.2 none full none none none 2 none Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 none na none 2 1 4903501 4903501 4903501 2018/12/20 0 562 none ATCC 11775 University of Arkansas for Medical Sciences 866789 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 0 5034834 none none assembly designated as neotype 5034834 0 none 4717 2 4903501 7 none none none none none none 1538 NZ_CP033092.2 1538 2841 0 100 CP033092.3505290.3506843 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia-Shigella;Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775 0 19 87 1
RS_GCF_003697185.1 0 99.69 0 481 o__Rhizobiales (UID3654) 319 0 5401000 85.1949585910858 4 4407202 69.519961977936 6339577 RS_GCF_020523825.1 f d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium;s__Methylobacterium brachiatum not type material none f 1 1 5981925 5982025 5982025 5 2800 NZ_CP033231.1 5982025 5 89 NZ_CP033231.1 2800 5171 0 100 CP033231.1373079.1375899 Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales;Beijerinckiaceae;Methylobacterium;Methylobacterium brachiatum 1584869 1584894 t f f 5981925 5982025 Chromosome ASM369718v1 na PRJNA224116 SAMN10272780 4 5981925 none 2018-10-30 GCA_003697185.1 none full none none none 4 none Methylobacterium brachiatum none na none 4 1 5982025 5982025 5982025 2018/10/30 1 269660 none TX0642 Korea university 269660 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Methylobacteriaceae;g__Methylobacterium;s__Methylobacterium brachiatum d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Methylobacteriaceae;g__Methylobacterium;s__Methylobacterium brachiatum 100 6339577 none none none 6339477 0 none 6111 4 5982025 5 none none none none none none 1480 NZ_CP033231.1-#5 1480 2734 0 100 CP033231.4355508.4357019 Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales;Beijerinckiaceae;Methylobacterium-Methylorubrum;Methylobacterium brachiatum 100 19 55 2
RS_GCF_003697205.1 0 98.03 0.34 1183 s__difficile (UID1169) 308 0 3335347 82.3627882397681 1 1163850 28.7400174832946 4049580 RS_GCF_001077535.1 f d__Bacteria;p__Bacillota_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides;s__Clostridioides difficile not type material none f 1 1 4049580 4049580 4049580 12 2894 NZ_CP033213.1 4049580 11 106 NZ_CP033213.1 2894 5345 0 100 MTVX01000001.1042891.1045786 Bacteria;Firmicutes;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Clostridioides;Clostridioides difficile 4049580 4049580 t f f 4049580 4049580 Complete Genome ASM369720v1 na PRJNA224116 SAMN10274208 none none none 2018-10-30 GCA_003697205.1 none full none none none 1 none Clostridioides difficile none na none 1 1 4049580 4049580 4049580 2018/10/30 0 1496 none CD10010 BGI 1496 d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Peptostreptococcaceae;g__Clostridioides;s__Clostridioides difficile d__Bacteria;x__Terrabacteria group;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Peptostreptococcaceae;g__Clostridioides;s__Clostridioides difficile 0 4049580 none none none 4049580 0 none 3574 1 4049580 12 none none none none none none 1501 NZ_CP033213.1 1501 2772 0 100 CP026614.30670.32177 Bacteria;Firmicutes;Clostridia;Peptostreptococcales-Tissierellales;Peptostreptococcaceae;Clostridioides;Clostridioides difficile 0 19 90 1
RS_GCF_004296495.1 0 64.89 0 136 k__Bacteria (UID2495) 80 0 186535 93.1203698156912 1 30680 15.3158010343657 200316 RS_GCF_017656055.1 f d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella dryophthoridicola not type material none f 1 1 200316 200316 200316 1 2928 NZ_AP018161.1 none 0 none none 2928 5408 0 100 AP018161.195153.198095 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;Candidatus Purcelliella;endosymbiont of Rhynchophorus ferrugineus 200316 200316 f f t 200316 200316 Complete Genome ASM429649v1 na PRJNA224116 SAMD00080335 none none none 2017-10-21 GCA_004296495.1 none full NARRFE1 none none 1 none endosymbiont of Rhynchophorus ferrugineus none na none 1 1 200316 200316 200316 2017/10/21 0 1971485 none NARRFE1 The Open University of Japan 1972133 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__;f__;g__Candidatus Nardonella;s__Candidatus Nardonella dryophthoridicola d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Candidatus Nardonella;s__Candidatus Nardonella dryophthoridicola;x__endosymbiont of Rhynchophorus ferrugineus 0 200316 none none none 200316 0 none 198 1 200316 1 none none none none none none 1604 NZ_AP018161.1 1604 2963 0 100 AP018161.193362.194973 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;endosymbionts;endosymbiont of Rhynchophorus ferrugineus 0 19 28 0
RS_GCF_004296515.1 0 81.88 0.62 136 k__Bacteria (UID2495) 80 100 205834 90.9566546913597 1 39376 17.3999885107756 226299 RS_GCF_004296515.1 t d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella sp004296515 not type material none f 1 1 226299 226299 226299 2 2892 NZ_AP018160.1 none 0 none none 2892 5341 0 100 AP018160.221162.224066 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;symbionts2;endosymbiont of Pachyrhynchus infernalis 226299 226299 f f t 226299 226299 Complete Genome ASM429651v1 na PRJNA224116 SAMD00080338 none none none 2017-10-21 GCA_004296515.1 none full NARPIN1 none none 1 none endosymbiont of Pachyrhynchus infernalis none na none 1 1 226299 226299 226299 2017/10/21 0 1971488 none NARPIN1 The Open University of Japan 1971488 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__;f__;g__Candidatus Nardonella;s__ d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;g__Candidatus Nardonella;s__endosymbiont of Pachyrhynchus infernalis 0 226299 none none none 226299 0 none 213 1 226299 2 none none none none none none 1552 NZ_AP018160.1 1552 2867 0 100 AP018160.219472.221029 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;endosymbionts;endosymbiont of Pachyrhynchus infernalis 0 19 32 0
RS_GCF_004296535.1 0 73.33 0 136 k__Bacteria (UID2495) 80 0 201990 91.880040574779 1 35526 16.1598609904431 219841 RS_GCF_004296535.1 t d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella sp004296535 not type material none f 1 1 219841 219841 219841 1 2943 NZ_AP018159.1 none 0 none none 2943 5435 0 100 AP018159.24685.27636 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;Candidatus Purcelliella;endosymbiont of Euscepes postfasciatus 219841 219841 f f t 219841 219841 Complete Genome ASM429653v1 na PRJNA224116 SAMD00080337 none none none 2017-10-21 GCA_004296535.1 none full NAREPO1 none none 1 none endosymbiont of Euscepes postfasciatus none representative genome none 1 1 219841 219841 219841 2017/10/21 0 650377 none NAREPO1 The Open University of Japan 650377 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__;f__;g__;s__ d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__endosymbiont of Euscepes postfasciatus 0 219841 none none none 219841 0 none 215 1 219841 1 none none none none none none 1574 NZ_AP018159.1 1574 2907 0 100 AP018159.27824.29401 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;endosymbionts;endosymbiont of Euscepes postfasciatus 0 18 26 0
RS_GCF_004296555.1 0 99.41 0 675 o__Thiotrichales (UID4410) 243 0 1611687 88.6965351002708 101 586098 32.2549364915139 1817080 RS_GCF_000008985.1 f d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella;s__Francisella tularensis not type material none f 17 17 113051 113051 5559 1 2879 NZ_SGWP01000064.1 5559 2 111 NZ_SGWP01000064.1 2879 5317 0 100 GU073995.1.2992 Bacteria;Proteobacteria;Gammaproteobacteria;Francisellales;Francisellaceae;Francisella;Francisella tularensis subsp. mediasiatica FSC147 17990 17990 t f f 35350 35350 Contig ASM429655v1 na PRJNA224116 SAMN10924158 101 35350 none 2019-02-19 GCA_004296555.1 none full none none none 0 none Francisella tularensis subsp. mediasiatica none na none none none none none none 2019/02/19 0 263 none SCPM-O-B-7175(A-554) SRCAMB 135248 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. mediasiatica 0 1817080 none none none 1817080 0 SGWP00000000.1 2037 101 5559 1 none none none none none none 1524 NZ_SGWP01000064.1 1523 2813 0 100 CP000915.1823129.1824652 Bacteria;Proteobacteria;Gammaproteobacteria;Francisellales;Francisellaceae;Francisella;Francisella tularensis subsp. mediasiatica FSC147 0 19 34 0
GB_GCA_002688505.1 2 77.08 0 136 k__Bacteria (UID2495) 80 0 243051 89.6288374665806 1 41722 15.3857500562372 271175 GB_GCA_002688505.1 t d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Stammera;s__Stammera capleta_A not type material none f 1 1 271175 271175 271175 1 2927 CP024013.1 271175 1 101 CP024013.1 2920 5393 0 100 CP024013.86157.89078 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;Candidatus Purcelliella;Enterobacteriaceae bacterium NZ1215 271175 271175 f f t 271175 271175 Complete Genome ASM268850v1 na PRJNA413589 SAMN07758087 none none none 2017-10-24 GCA_002688505.1 derived from metagenome full NZ1215 none none 1 none Candidatus Stammera capleta 0 na none 1 1 271175 271175 271175 2017/10/24 0 2608262 none NZ1215 University of Luxembourg 2608262 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Candidatus Stammera;s__Candidatus Stammera capleta d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta 0 271175 none none none 271175 0 none 257 1 271175 1 none none none none none none 1607 CP024013.1 1393 1583 0 87.437 AP018160.219472.221029 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Morganellaceae;endosymbionts;endosymbiont of Pachyrhynchus infernalis 0 19 29 0
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