magmap / testdata /checkm.lineage_wf.qa_2.tsv
Daniel Lundin
CheckM and GTDBtk data
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Bin Id Marker lineage # genomes # markers # marker sets Completeness Contamination Strain heterogeneity Genome size (bp) # ambiguous bases # scaffolds # contigs N50 (scaffolds) N50 (contigs) Mean scaffold length (bp) Mean contig length (bp) Longest scaffold (bp) Longest contig (bp) GC GC std (scaffolds > 1kbp) Coding density Translation table # predicted genes 0 1 2 3 4 5+
GCA_002688505.1_ASM268850v1_genomic k__Bacteria (UID2495) 2993 136 80 77.08 0.00 0.00 271175 2 1 1 271175 271173 271175 271173 271175 271173 15.4 0.00 89.63 4 257 20 116 0 0 0 0
GCF_004296495.1_ASM429649v1_genomic k__Bacteria (UID2495) 2993 136 80 64.89 0.00 0.00 200316 0 1 1 200316 200316 200316 200316 200316 200316 15.3 0.00 93.12 11 198 33 103 0 0 0 0