magmap / testdata /gtdbtk.bac120.summary.tsv
Daniel Lundin
CheckM and GTDBtk data
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user_genome classification fastani_reference fastani_reference_radius fastani_taxonomy fastani_ani fastani_af closest_placement_reference closest_placement_radius closest_placement_taxonomy closest_placement_ani closest_placement_af pplacer_taxonomy classification_method note other_related_references(genome_id,species_name,radius,ANI,AF) msa_percent translation_table red_value warnings
GCA_002688505.1_ASM268850v1_genomic d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Stammera;s__Stammera capleta GCA_002688505.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Stammera;s__Stammera capleta 100.0 0.99 GCA_002688505.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Stammera;s__Stammera capleta 100.0 0.99 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments N/A 64.13 4 N/A N/A
GCF_004296495.1_ASM429649v1_genomic d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella dryophthoridicola GCF_004296495.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella dryophthoridicola 100.0 1.0 GCF_004296495.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__Nardonella dryophthoridicola 100.0 1.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Nardonella;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_004296515.1, s__Nardonella sp004296515, 95.0, 78.8, 0.58; GCF_004296535.1, s__Nardonella sp004296535, 95.0, 78.65, 0.58; GCF_004296475.1, s__Nardonella sp004296475, 95.0, 78.51, 0.61 49.08 11 N/A N/A