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nf-core
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magmap

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magmap / testdata

557 kB

13 contributors

History: 15 commits

Daniel Lundin

Adding smaller NCBI files

ce0800a almost 2 years ago

GCA_002688505.1_ASM268850v1_genomic.fna.gz

69.6 kB

Minimum test data for magmap over 4 years ago
GCA_002688505.1_ASM268850v1_genomic.gff.gz

89.3 kB

Minimum test data for magmap over 4 years ago
GCF_004296495.1_ASM429649v1_genomic.fna.gz

51.7 kB

Minimum test data for magmap over 4 years ago
GCF_004296495.1_ASM429649v1_genomic.gff.gz

65.2 kB

Minimum test data for magmap over 4 years ago
assembly_summary_genbank.txt

1.83 kB

Adding smaller NCBI files almost 2 years ago
assembly_summary_refseq.txt

2.83 kB

Adding smaller NCBI files almost 2 years ago
bac120_metadata.tsv

7.87 kB

Remove RS_GCF_004294725.1 from bac120_metadata.tsv about 4 years ago
checkm.lineage_wf.qa_2.tsv

733 Bytes

CheckM and GTDBtk data about 4 years ago
genometest.csv

252 Bytes

new test-case almost 2 years ago
gtdbtk.ar122.summary.tsv

389 Bytes

CheckM and GTDBtk data about 4 years ago
gtdbtk.bac120.summary.tsv

2.07 kB

CheckM and GTDBtk data about 4 years ago
ncbi_accessions.tsv

32 Bytes

Test data with NCBI accessions over 4 years ago
ncbi_assembly_summaries.txt

179 Bytes

Adding smaller NCBI files almost 2 years ago
rrna.fna.gz

1.12 kB

Adding rrna file over 4 years ago
s0_1.fastq.gz

15.1 kB
xet

Increased quality scores over 4 years ago
s0_2.fastq.gz

15.1 kB
xet

Increased quality scores over 4 years ago
s1_1.fastq.gz

15 kB
xet

Increased quality scores over 4 years ago
s1_2.fastq.gz

15.1 kB
xet

Increased quality scores over 4 years ago
s2_1.fastq.gz

29.9 kB
xet

s2 reads were not paired about 4 years ago
s2_2.fastq.gz

29.9 kB
xet

s2 reads were not paired about 4 years ago
sourmash_k21.index.sbt.zip
Pickle imports
- No problematic imports detected
What is a pickle import?
67.6 kB

Move the index almost 2 years ago
sourmash_test.index.sbt.zip
Pickle imports
- No problematic imports detected
What is a pickle import?
75.6 kB

new test almost 2 years ago