Add nmrgym processing artifact
Browse files- nmrgym/all.parquet +3 -0
- nmrgym/canonical_analysis.json +196 -0
- nmrgym/processor_compatibility.json +65 -0
- nmrgym/test.parquet +3 -0
- nmrgym/train.parquet +3 -0
- nmrgym/val.parquet +3 -0
nmrgym/all.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:5efa741acec75f7a881a4e806031c880a51856346e87a3cef2cd5c6a4fa3ff12
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size 35311571
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nmrgym/canonical_analysis.json
ADDED
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@@ -0,0 +1,196 @@
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{
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"files": [
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{
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"both_modality_usable_count": 215861,
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"bytes": 27527488,
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"c_nmr_peaks": {
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"empty_record_count": 0,
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| 8 |
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"maximum_peaks_per_record": 343,
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| 9 |
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"null_record_count": 0,
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| 10 |
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"shift_max": 7903365.0,
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| 11 |
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"shift_min": -124.29,
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| 12 |
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"total_peak_count": 4181260
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},
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"canonical_multiplicity_counts": {
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"<null>": 3433200
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},
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"duplicate_record_id_count": 0,
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"duplicate_record_ids_checked": true,
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"h_nmr_peaks": {
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"empty_record_count": 0,
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| 21 |
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"maximum_peaks_per_record": 878,
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| 22 |
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"null_record_count": 0,
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| 23 |
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"shift_max": 20142.28,
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| 24 |
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"shift_min": -331.0,
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| 25 |
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"total_peak_count": 3433200
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},
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"path": "/mnt/filesystem-test/nmr/datasets/nmrgym/train.parquet",
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| 28 |
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"proton_integration": {
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| 29 |
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"null_count": 3433200,
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| 30 |
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"zero_count": 0
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| 31 |
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},
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| 32 |
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"proton_j_values": {
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| 33 |
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"empty_count": 0,
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| 34 |
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"nonempty_count": 0,
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| 35 |
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"null_count": 3433200
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},
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| 37 |
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"records_fully_validated": true,
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| 38 |
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"row_groups": 5,
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| 39 |
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"rows": 215861,
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| 40 |
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"schema_matches_canonical": true,
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| 41 |
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"schema_metadata": {
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| 42 |
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"canonical_schema_version": "2",
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| 43 |
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"converter": "dataset_overlap_audit/convert_nmrgym.py",
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| 44 |
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"rdkit_version": "2026.03.4",
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| 45 |
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"source_dataset": "NMRGym"
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| 46 |
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},
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| 47 |
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"source_values": {
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| 48 |
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"NMRGym": 215861
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| 49 |
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}
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| 50 |
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},
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| 51 |
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{
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| 52 |
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"both_modality_usable_count": 27084,
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| 53 |
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"bytes": 3764453,
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| 54 |
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"c_nmr_peaks": {
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| 55 |
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"empty_record_count": 0,
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| 56 |
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"maximum_peaks_per_record": 116,
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| 57 |
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"null_record_count": 0,
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| 58 |
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"shift_max": 1629.0,
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| 59 |
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"shift_min": 0.21,
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| 60 |
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"total_peak_count": 594321
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| 61 |
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},
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| 62 |
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"canonical_multiplicity_counts": {
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| 63 |
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"<null>": 452439
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| 64 |
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},
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| 65 |
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"duplicate_record_id_count": 0,
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| 66 |
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"duplicate_record_ids_checked": true,
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| 67 |
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"h_nmr_peaks": {
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| 68 |
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"empty_record_count": 0,
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| 69 |
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"maximum_peaks_per_record": 459,
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| 70 |
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"null_record_count": 0,
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| 71 |
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"shift_max": 876.83,
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| 72 |
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"shift_min": -273.292,
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| 73 |
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"total_peak_count": 452439
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| 74 |
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},
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| 75 |
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"path": "/mnt/filesystem-test/nmr/datasets/nmrgym/val.parquet",
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| 76 |
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"proton_integration": {
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| 77 |
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"null_count": 452439,
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| 78 |
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"zero_count": 0
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| 79 |
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},
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| 80 |
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"proton_j_values": {
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| 81 |
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"empty_count": 0,
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| 82 |
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"nonempty_count": 0,
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| 83 |
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"null_count": 452439
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| 84 |
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},
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| 85 |
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"records_fully_validated": true,
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| 86 |
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"row_groups": 1,
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| 87 |
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"rows": 27084,
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| 88 |
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"schema_matches_canonical": true,
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| 89 |
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"schema_metadata": {
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| 90 |
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"canonical_schema_version": "2",
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| 91 |
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"converter": "dataset_overlap_audit/convert_nmrgym.py",
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| 92 |
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"rdkit_version": "2026.03.4",
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| 93 |
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"source_dataset": "NMRGym"
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| 94 |
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},
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| 95 |
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"source_values": {
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| 96 |
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"NMRGym": 27084
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| 97 |
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}
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| 98 |
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},
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| 99 |
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{
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| 100 |
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"both_modality_usable_count": 27054,
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| 101 |
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"bytes": 3906369,
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| 102 |
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"c_nmr_peaks": {
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| 103 |
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"empty_record_count": 0,
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| 104 |
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"maximum_peaks_per_record": 147,
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| 105 |
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"null_record_count": 0,
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| 106 |
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"shift_max": 2176.72,
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| 107 |
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"shift_min": 0.0,
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| 108 |
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"total_peak_count": 603055
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| 109 |
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},
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| 110 |
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"canonical_multiplicity_counts": {
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| 111 |
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"<null>": 465068
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| 112 |
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},
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| 113 |
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"duplicate_record_id_count": 0,
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| 114 |
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"duplicate_record_ids_checked": true,
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| 115 |
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"h_nmr_peaks": {
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| 116 |
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"empty_record_count": 0,
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| 117 |
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"maximum_peaks_per_record": 1810,
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| 118 |
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"null_record_count": 0,
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| 119 |
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"shift_max": 1620134.08,
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| 120 |
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"shift_min": -61.1185,
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| 121 |
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"total_peak_count": 465068
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| 122 |
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},
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| 123 |
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"path": "/mnt/filesystem-test/nmr/datasets/nmrgym/test.parquet",
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| 124 |
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"proton_integration": {
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| 125 |
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"null_count": 465068,
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| 126 |
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"zero_count": 0
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| 127 |
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},
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| 128 |
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"proton_j_values": {
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| 129 |
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"empty_count": 0,
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| 130 |
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"nonempty_count": 0,
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| 131 |
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"null_count": 465068
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| 132 |
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},
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| 133 |
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"records_fully_validated": true,
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| 134 |
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"row_groups": 1,
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| 135 |
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"rows": 27054,
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| 136 |
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"schema_matches_canonical": true,
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| 137 |
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"schema_metadata": {
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| 138 |
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"canonical_schema_version": "2",
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| 139 |
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"converter": "dataset_overlap_audit/convert_nmrgym.py",
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| 140 |
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"rdkit_version": "2026.03.4",
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| 141 |
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"source_dataset": "NMRGym"
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| 142 |
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},
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| 143 |
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"source_values": {
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| 144 |
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"NMRGym": 27054
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| 145 |
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}
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| 146 |
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},
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| 147 |
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{
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| 148 |
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"both_modality_usable_count": 269999,
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| 149 |
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"bytes": 35311571,
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| 150 |
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"c_nmr_peaks": {
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| 151 |
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"empty_record_count": 0,
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| 152 |
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"maximum_peaks_per_record": 343,
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| 153 |
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"null_record_count": 0,
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| 154 |
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"shift_max": 7903365.0,
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| 155 |
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"shift_min": -124.29,
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| 156 |
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"total_peak_count": 5378636
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| 157 |
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},
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| 158 |
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"canonical_multiplicity_counts": {
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| 159 |
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"<null>": 4350707
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| 160 |
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},
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| 161 |
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"duplicate_record_id_count": 0,
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| 162 |
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"duplicate_record_ids_checked": true,
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| 163 |
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"h_nmr_peaks": {
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| 164 |
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"empty_record_count": 0,
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| 165 |
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"maximum_peaks_per_record": 1810,
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| 166 |
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"null_record_count": 0,
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| 167 |
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"shift_max": 1620134.08,
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| 168 |
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"shift_min": -331.0,
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| 169 |
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"total_peak_count": 4350707
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| 170 |
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},
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| 171 |
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"path": "/mnt/filesystem-test/nmr/datasets/nmrgym/all.parquet",
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| 172 |
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"proton_integration": {
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| 173 |
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"null_count": 4350707,
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| 174 |
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"zero_count": 0
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| 175 |
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},
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| 176 |
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"proton_j_values": {
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| 177 |
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"empty_count": 0,
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| 178 |
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"nonempty_count": 0,
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| 179 |
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"null_count": 4350707
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| 180 |
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},
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| 181 |
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"records_fully_validated": true,
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| 182 |
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"row_groups": 6,
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| 183 |
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"rows": 269999,
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| 184 |
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"schema_matches_canonical": true,
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| 185 |
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"schema_metadata": {
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| 186 |
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"canonical_schema_version": "2",
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| 187 |
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"converter": "dataset_overlap_audit/convert_nmrgym.py",
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| 188 |
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"rdkit_version": "2026.03.4",
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| 189 |
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"source_dataset": "NMRGym"
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| 190 |
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},
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| 191 |
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"source_values": {
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| 192 |
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"NMRGym": 269999
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| 193 |
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}
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| 194 |
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}
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| 195 |
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]
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| 196 |
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}
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nmrgym/processor_compatibility.json
ADDED
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@@ -0,0 +1,65 @@
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| 1 |
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{
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"dataset": "nmrgym",
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| 3 |
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"input": "/mnt/filesystem-test/nmr/datasets/nmrgym/all.parquet",
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| 4 |
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"mode": "canonical",
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| 5 |
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"models": {
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| 6 |
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"nmrpeak": {
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| 7 |
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"accepted_records": 0,
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| 8 |
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"issue_occurrence_counts": {
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| 9 |
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"invalid_integration": 4350707,
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| 10 |
+
"missing_j_values": 4350707,
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| 11 |
+
"missing_multiplicity": 4350707,
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| 12 |
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"missing_shift_range": 4350707
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| 13 |
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},
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| 14 |
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"record_issue_code_counts": {
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| 15 |
+
"invalid_integration": 269999,
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| 16 |
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"missing_j_values": 269999,
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| 17 |
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"missing_multiplicity": 269999,
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| 18 |
+
"missing_shift_range": 269999
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| 19 |
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},
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| 20 |
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"rejected_records": 269999
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| 21 |
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},
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| 22 |
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"nmrsolver": {
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| 23 |
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"accepted_records": 0,
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| 24 |
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"issue_occurrence_counts": {
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| 25 |
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"missing_proton_expansion": 4350707
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| 26 |
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},
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| 27 |
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"record_issue_code_counts": {
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| 28 |
+
"missing_proton_expansion": 269999
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| 29 |
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},
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| 30 |
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"rejected_records": 269999
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| 31 |
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},
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| 32 |
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"nmrtrans": {
|
| 33 |
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"accepted_records": 0,
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| 34 |
+
"issue_occurrence_counts": {
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| 35 |
+
"missing_integration": 4350707,
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| 36 |
+
"missing_j_values": 4350707,
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| 37 |
+
"missing_multiplicity": 4350707,
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| 38 |
+
"missing_peak_width": 4350707,
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| 39 |
+
"too_many_c_peaks": 294,
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| 40 |
+
"too_many_h_peaks": 1167
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| 41 |
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},
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| 42 |
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"record_issue_code_counts": {
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| 43 |
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"missing_integration": 269999,
|
| 44 |
+
"missing_j_values": 269999,
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| 45 |
+
"missing_multiplicity": 269999,
|
| 46 |
+
"missing_peak_width": 269999,
|
| 47 |
+
"too_many_c_peaks": 294,
|
| 48 |
+
"too_many_h_peaks": 1167
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| 49 |
+
},
|
| 50 |
+
"rejected_records": 269999
|
| 51 |
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},
|
| 52 |
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"ultranmr": {
|
| 53 |
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"accepted_records": 0,
|
| 54 |
+
"issue_occurrence_counts": {
|
| 55 |
+
"missing_proton_expansion": 4350707
|
| 56 |
+
},
|
| 57 |
+
"record_issue_code_counts": {
|
| 58 |
+
"missing_proton_expansion": 269999
|
| 59 |
+
},
|
| 60 |
+
"rejected_records": 269999
|
| 61 |
+
}
|
| 62 |
+
},
|
| 63 |
+
"rows": 269999,
|
| 64 |
+
"scope": "processor field validation; NMRPeak sequence length is checked later during collation"
|
| 65 |
+
}
|
nmrgym/test.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:fcc0a688862f3fa53dc697ea246b939e2445f0e191a2cef9883661ec9824170e
|
| 3 |
+
size 3906369
|
nmrgym/train.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3370055c2104ea5adc7e8c1b0ddbf280ddbd757b46fab2445fa26042978ca61f
|
| 3 |
+
size 27527488
|
nmrgym/val.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:66fe18e6f6289d09e0ef3bf699849abda1c43bad2b26fb9c2f31b321afdf6598
|
| 3 |
+
size 3764453
|