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README.md
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license: cc0-1.0
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license: cc0-1.0
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# NCBI Disease Corpus for Binary Sequence Classification
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## Description
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This dataset is part of the MSc dissertation study titled 'Investigating the Potential of Identifying Kidney Disease-Related Articles Using Transformer Models and Large Language Models' at the University of Southampton. It is a modified version of the [NCBI Disease Corpus](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3951655/), with a binary label added to each sample. The binary label indicates whether the sample contains disease concepts (Class 1) or not (Class 0).
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## Dataset Structure
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The dataset is split into train and test sets:
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| Split | Class 1 | Class 0 | Total Samples per Split |
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| ----- | ------- | ------- | ----------------------- |
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| Train | 3,419 | 2,938 | 6,357 |
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| Test | 539 | 402 | 941 |
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Columns:
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- **id**: Unique identifier for each sample. The ID indicate the original index of the sample in the NCBI Disease Corpus. For example, 'test-0' indicates the first sample in the test set.
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- **tokens**: The text content of the sample split into tokens.
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- **ner_tags**: The named entity recognition (NER) tags for each token. The tags are 0, 1, and 2. 0 indicates that the token is not part of a disease concept, 1 indicates the beginning of a disease concept, and 2 indicates the continuation of a disease concept.
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- **Text**: The joined text content of the sample.
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- **labels**: The binary label for the sample. 1 indicates that the sample contains disease concepts, and 0 indicates that the sample does not contain disease concepts.
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