Resaves every colorado-boulder HDF5 file from zea 0.1.1 to zea 0.1.7 with `zea data resave` (zea 0.1.7).
Changed files: 62 total.
Folders changed:
- colorado-boulder/Sub-dataset-1/: 10 files
- colorado-boulder/Sub-dataset-2/: 10 files
- colorado-boulder/Sub-dataset-3/: 42 files
What changes:
- root attribute `zea_version`: `0.1.1` -> `0.1.7`
- new dataset `tracks/track_0/transmit_only = False`
- field `description` attributes updated to the zea 0.1.7 wording (`probe_center_frequency`, `focus_distances`, `tx_apodizations`), and added to `metadata/subject/{id,type}`
- storage: the old lzf compression is replaced by zea's default, so the files shrink from 22.7 GB to 14.0 GB and zea can read them concurrently
Raw RF data and acquisition data are untouched: every dataset in every resaved file, including `raw_data`, was compared element for element against the file on `main` and is identical. The metadata patch from #28 (`metadata/subject/*`, root `us_machine`) is carried over as is.
Th…
24 days ago
tue-carotid: sync data card and main image with GitHub (#22)
- tue-carotid: sync data card and main image with GitHub (49106c6c7355d28e46deda66e62dacf1c799b1c9)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
- twente-microbubblesim: link the CC BY 4.0 deed in the data card (75f4e587d74c42858d0da752ef30fc18abaff34b)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
unc-liver: add the release figure to assets (#44)
- ulmshare: link the CC BY 4.0 deed in the data card (132a4bc289153ab67e940af3a83601d601617f0e)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
- stanford-murine: point the data card at this repository (079d44d7ce2d93a1b8d4610f9e35df918614b99a)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
- vanderbilt: add anatomy annotation, and mark the CIRS scan as a phantom (775816c1a94cd5468d424b0d4552c81d01fa14c5)
Co-authored-by: Oisín Nolan <oisinn@users.noreply.huggingface.co>
- weillcornell: point the reference figure at assets/ and upload it (a3bfebbcf21a99f604155d9e62e57ef2b748e007)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
colorado-boulder: sync data card and tracked-SSA figures with GitHub (#30)
- colorado-boulder: sync data card and tracked-SSA figures with GitHub (c6ebd0263ca5dd37799bf008e24edcf7990674a9)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
- Tidy the pipeline YAMLs (7e726adfd8bd3e8ab397e8a4fb284fe20605c151)
- Ship the two configs the reconstruct scripts need (d330799806f927124f06b01ed0617f690271799c)
- Normalize line endings to LF (cce1ebbf5636b564fb362764eec038afbc1cd7d9)
- Remove the Python helpers from twente-microbubblesim (0fde458d1f28fe3ff3d6ba1ceac2a6cf0ee16411)
- Remove the last reconstruction script (5d49e4f4dc1eccd3cf2986a45e9cb493eb6ee017)
- add cross link to github (0715e04468208c71223097ca6ac292594882f6ce)
- Drop the comment from .gitattributes (33fd6aacd7e112ea169d1ca953c475e81362ca5a)
- Point data cards at pipeline.yaml and the merged reconstruct scripts (2de063e00e78dfe4f0acd302fa4ded18740f5a56)
- Lead the tue-carotid card with a rendered bifurcation loop (1df230e2f455ed02a31177b9e80eebba53424a29)
- Match the wpi card's code block to the formatter (cbe25eb94fa1b9405d40574ff354c8194b38b095)
Co-authored-by: Tristan Stevens <tristan-deep@users.noreply.huggingface.co>
30 days ago
Simplify root README and standardize institution credits (#4)
