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b/Surgical/turin/mitic_lerobot_ex_vivo/videos/chunk-000/observation.images.endoscope.right/episode_000774.mp4 @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6000d2b6eef5e4da5eb272dc94f2f9d8a442686d7244a8eac93201d8ab3fc350 +size 13502180 diff --git a/Surgical/turin/mitic_lerobot_plastic_pad/meta/README.md b/Surgical/turin/mitic_lerobot_plastic_pad/meta/README.md new file mode 100644 index 0000000000000000000000000000000000000000..4eb267bb3361bfbe8b8649991ff8232fb1cd4adb --- /dev/null +++ b/Surgical/turin/mitic_lerobot_plastic_pad/meta/README.md @@ -0,0 +1,160 @@ +# DVRK Suturing Subtasks Dataset - README + +--- + +## At a Glance + +Teleoperated demonstrations of a dVRK robot performing suturing subtasksk, like tissue lifting, needle insertion, needle extraction, knot tying on plastic phantom. + +--- + +## Dataset Overview + +| | | +| :--- | :--- | +| **Total Trajectories** | 550 | +| **Total Hours** | [TO be filled] | +| **Data Type** | Ex-Vivo | +| **License** | CC BY 4.0 | +| **Version** | 1.0 | + +--- + +## Tasks & Domain + +### Domain + +- [x] **Surgical Robotics** +- [ ] **Ultrasound Robotics** +- [ ] **Other Healthcare Robotics** + +### Demonstrated Skills + +- Bimanual manipulation +- Pick and place +- Needle handling +- Knot tying +- Soft tissue manipulation + +--- + +## Data Collection Details + +### Collection Method + +- [x] **Human Teleoperation** +- [ ] **Programmatic/State-Machine** +- [ ] **AI Policy / Autonomous** +- [ ] **Other** + +### Operator Details + +| | Description | +| :--- | :--- | +| **Operator Count** | 5 operators | +| **Operator Skill Level** | Expert (Surgeons) and Novice (ML researchers with minimal surgical experience) | +| **Collection Period** | [To be filled] | + +### Recovery Demonstrations + +- [x] **Yes** +- [] **No** + +For each task, recovery demonstrations and errors are recorded. + +--- + +## Diversity Dimensions + +- [x] **Target Object** (different wounds for suturing and different anatomical specimens) +- [] **Spatial Layout** +- [x] **Camera Position / Angle** (different position and orientations) +- [x] **Lighting Conditions** +- [ ] **Robot Embodiment** +- [x] **Task Execution** (different operators performed the tasks differently) +- [x] **Background / Scene** (different background conditions) + +We have recorded tasks on a plastic phantom. Camera position and lighting condition were changed after every 20 episodes circa. We recruited 3 expert surgeons and 2 ML researchers that performed the tasks according to their expertise and own techniques. The background conditions change between colon and stomach episodes. + +--- + +## Equipment & Setup + +### Robotic Platform(s) + +- **Robot 1:** dVRK (da Vinci Research Kit) + +### Sensors & Cameras + +| Type | Model/Details | +| :--- | :--- | +| **Primary Camera** | Stereo Endoscope (left), 1920x1080 @ 30 fps | +| **Secondary Camera** | Stereo Endoscope (right), 1920x1080 @ 30 fps | + +--- + +## Action & State Space Representation + +### Action Space Representation + +**Primary Action Representation:** +- [x] **Absolute Cartesian** (position/orientation relative to robot base) + +**Orientation Representation:** +- [x] **Quaternions** (x, y, z, w) + +**Action Dimensions:** +``` +action: [psm1_x, psm1_y, psm1_z, psm1_qx, psm1_qy, psm1_qz, psm1_qw, + psm2_x, psm2_y, psm2_z, psm2_qx, psm2_qy, psm2_qz, psm2_qw] +- psm1_x, psm1_y, psm1_z: PSM1 absolute cartesian positions +- psm1_qx, psm1_qy, psm1_qz, psm1_qw: PSM1 absolute cartesian orientations +- psm2_x, psm2_y, psm2_z: PSM2 absolute cartesian positions +- psm2_qx, psm2_qy, psm2_qz, psm2_qw: PSM2 absolute cartesian orientations +``` + +### State Space Representation + +**State Information Included:** +- [x] **Joint Positions** (all articulated joints) + +**State Dimensions:** +``` +observation.state: [psm1_j1, psm1_j2, psm1_j3, psm1_j4, psm1_j5, psm1_j6, + psm2_j1, psm2_j2, psm2_j3, psm2_j4, psm2_j5, psm2_j6] +- psm1_j1-j6: PSM1 6-DOF joint positions (radians) +- psm2_j1-j6: PSM2 6-DOF joint positions (radians) +``` + +--- + +## Data Synchronization Approach + +All data are acquired using rosbag and all ROS messages are stamped with their header.stamp fields. +Data is synchronized offline post collection. The right camera serves as the reference timestamp source. For each frame acquired, only the (time) closest data is saved from robot kinematics, with a tolerance of 0.1 secs. + +**Synchronization Method:** +- Reference stream: `/decklink/right/image_raw/compressed` (right stereo camera) +- Tolerance: 0.1 seconds +- Framework: ROS (Robot Operating System) + +Messages from the following topics are synchronized: +- `/decklink/left/image_raw/compressed` - Left camera images +- `/decklink/right/image_raw/compressed` - Right camera images +- `/PSM1/measured_js` - PSM1 joint states +- `/PSM1/measured_cp` - PSM1 absolute cartesian position +- `/PSM2/measured_js` - PSM2 joint states +- `/PSM2/measured_cp` - PSM2 absolute cartesian position + +--- + +## Attribution & Contact + +| | | +| :--- | :--- | +| **Dataset Lead** | Matteo Pescio, Francesco Marzola, Luigi Muratore, Federica Barontini, Giovanni Distefano, Federico Lavagno, Giulio Dagnino, Alberto Arezzo | +| **Institution** | MITIC Lab - Università degli Studi di Torino | +| **Contact Email** | matteo.pescio@unito.it, francesco.marzola@unito.it, luigi.muratore@studenti.polito.it, federica.barontini@unito.it, giovanni.distefano@unito.it, federico.lavagno@unito.it, giulio.dagnino@unito.it, alberto.arezzo@unito.it | +| **Citation (BibTeX)** |
@misc{dvrk_suturing_subtasks_2025,
author = {Pescio, Matteo and Marzola, Francesco and Muratore, Luigi and Barontini, Federica and Distefano, Giovanni and Lavagno, Federico and Dagnino, Giulio and Arezzo, Alberto},
title = {DVRK Suturing Subtasks Dataset},
year = {2025},
publisher = {Open-H-Embodiment},
} |
+
+---
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new file mode 100644
index 0000000000000000000000000000000000000000..6b6e0495126ae6e4590f64aa3b66bbad65be64db
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diff --git a/Surgical/turin/mitic_lerobot_plastic_pad/meta/episodes_stats.jsonl b/Surgical/turin/mitic_lerobot_plastic_pad/meta/episodes_stats.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..9984c968f7032469871f6514133d8a4a4ab72e9c
--- /dev/null
+++ b/Surgical/turin/mitic_lerobot_plastic_pad/meta/episodes_stats.jsonl
@@ -0,0 +1,550 @@
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diff --git a/Surgical/turin/mitic_lerobot_plastic_pad/meta/info.json b/Surgical/turin/mitic_lerobot_plastic_pad/meta/info.json
new file mode 100644
index 0000000000000000000000000000000000000000..f32879a58a5c6e52d0717b255d83106779c38cb5
--- /dev/null
+++ b/Surgical/turin/mitic_lerobot_plastic_pad/meta/info.json
@@ -0,0 +1,177 @@
+{
+ "codebase_version": "v2.1",
+ "robot_type": "dvrk",
+ "total_episodes": 550,
+ "total_frames": 149846,
+ "total_tasks": 7,
+ "total_videos": 1100,
+ "total_chunks": 1,
+ "chunks_size": 1000,
+ "fps": 30,
+ "splits": {
+ "train": "0:440",
+ "val": "440:495",
+ "test": "495:550",
+ "perfect": "4:6,7:8,9:11,12:13,17:20,26:28,32:33,38:39,40:41,43:44,48:49,50:52,53:72,73:103,104:105,106:109,110:116,117:118,120:124,125:126,127:132,133:139,143:147,148:201,202:204,207:209,210:214,216:219,221:229,231:232,233:235,236:239,250:300,305:307,308:309,318:321,322:323,328:329,331:332,337:340,341:342,345:348,350:454,455:456,457:459,460:474,475:478,479:481,482:484,485:487,491:496,497:550",
+ "recovery": "0:4,6:7,8:9,11:12,14:17,21:26,28:32,33:38,41:43,45:46,47:48,52:53,72:73,105:106,124:125,132:133,139:140,141:143,147:148,201:202,204:207,209:210,214:216,219:220,229:231,232:233,235:236,239:241,242:250,321:322,336:337,344:345,454:455,456:457,474:475,478:479,481:482,484:485,487:491,496:497",
+ "failure": "13:14,20:21,39:40,44:45,46:47,49:50,103:104,109:110,116:117,118:120,126:127,140:141,220:221,241:242,300:305,307:308,309:318,323:328,329:331,332:336,340:341,342:344,348:350,459:460"
+ },
+ "data_path": "data/chunk-{episode_chunk:03d}/episode_{episode_index:06d}.parquet",
+ "video_path": "videos/chunk-{episode_chunk:03d}/{video_key}/episode_{episode_index:06d}.mp4",
+ "features": {
+ "observation.images.endoscope.left": {
+ "dtype": "video",
+ "shape": [
+ 1080,
+ 1920,
+ 3
+ ],
+ "names": [
+ "height",
+ "width",
+ "channel"
+ ],
+ "info": {
+ "video.height": 1080,
+ "video.width": 1920,
+ "video.codec": "av1",
+ "video.pix_fmt": "yuv420p",
+ "video.is_depth_map": false,
+ "video.fps": 30,
+ "video.channels": 3,
+ "has_audio": false
+ }
+ },
+ "observation.images.endoscope.right": {
+ "dtype": "video",
+ "shape": [
+ 1080,
+ 1920,
+ 3
+ ],
+ "names": [
+ "height",
+ "width",
+ "channel"
+ ],
+ "info": {
+ "video.height": 1080,
+ "video.width": 1920,
+ "video.codec": "av1",
+ "video.pix_fmt": "yuv420p",
+ "video.is_depth_map": false,
+ "video.fps": 30,
+ "video.channels": 3,
+ "has_audio": false
+ }
+ },
+ "observation.state": {
+ "dtype": "float32",
+ "shape": [
+ 12
+ ],
+ "names": [
+ "PSM1_js_outer_yaw",
+ "PSM1_js_outer_pitch",
+ "PSM1_js_outer_insertion",
+ "PSM1_js_outer_roll",
+ "PSM1_js_outer_wrist_pitch",
+ "PSM1_js_outer_wrist_yaw",
+ "PSM2_js_outer_yaw",
+ "PSM2_js_outer_pitch",
+ "PSM2_js_outer_insertion",
+ "PSM2_js_outer_roll",
+ "PSM2_js_outer_wrist_pitch",
+ "PSM2_js_outer_wrist_yaw"
+ ]
+ },
+ "action": {
+ "dtype": "float32",
+ "shape": [
+ 14
+ ],
+ "names": [
+ "PSM1_pos_x",
+ "PSM1_pos_y",
+ "PSM1_pos_z",
+ "PSM1_ori_x",
+ "PSM1_ori_y",
+ "PSM1_ori_z",
+ "PSM1_ori_w",
+ "PSM2_pos_x",
+ "PSM2_pos_y",
+ "PSM2_pos_z",
+ "PSM2_ori_x",
+ "PSM2_ori_y",
+ "PSM2_ori_z",
+ "PSM2_ori_w"
+ ]
+ },
+ "instruction.text": {
+ "dtype": "string",
+ "shape": [
+ 1
+ ],
+ "description": "Natural language task description"
+ },
+ "observation.meta.demo_type": {
+ "dtype": "string",
+ "shape": [
+ 1
+ ],
+ "names": [
+ "value"
+ ]
+ },
+ "timestamp": {
+ "dtype": "float32",
+ "shape": [
+ 1
+ ],
+ "names": null
+ },
+ "frame_index": {
+ "dtype": "int64",
+ "shape": [
+ 1
+ ],
+ "names": null
+ },
+ "episode_index": {
+ "dtype": "int64",
+ "shape": [
+ 1
+ ],
+ "names": null
+ },
+ "index": {
+ "dtype": "int64",
+ "shape": [
+ 1
+ ],
+ "names": null
+ },
+ "task_index": {
+ "dtype": "int64",
+ "shape": [
+ 1
+ ],
+ "names": null
+ }
+ },
+ "task_prompts": {
+ "Needle_extraction": "Extract the needle from the plastic phantom",
+ "Needle_grasping": "Grasp the needle from the plastic phantom",
+ "Needle_insertion": "Insert the needle into the plastic phantom",
+ "Needle_positioning": "Position the needle for suturing",
+ "Needle_transfer_left_right": "Transfer the needle from left to right arms",
+ "Needle_transfer_right_left": "Transfer the needle from right to left arms",
+ "Tissue_lift": "Lift the plastic phantom to expose the workspace"
+ },
+ "source_path": "/mnt/mitic-nas/Open_H_Embodiment/MITIC_UNITO/Plastic_pad",
+ "labels_used": {
+ "recovery": 73,
+ "perfect": 430,
+ "failure": 47
+ }
+}
\ No newline at end of file
diff --git a/Surgical/turin/mitic_lerobot_plastic_pad/meta/modality.json b/Surgical/turin/mitic_lerobot_plastic_pad/meta/modality.json
new file mode 100644
index 0000000000000000000000000000000000000000..57c4beb7fd4fc3ff4d217048c756e5abf0052134
--- /dev/null
+++ b/Surgical/turin/mitic_lerobot_plastic_pad/meta/modality.json
@@ -0,0 +1,46 @@
+{
+ "video": {
+ "endoscope_left": {
+ "original_key": "observation.images.endoscope.left"
+ },
+ "endoscope_right": {
+ "original_key": "observation.images.endoscope.right"
+ }
+ },
+ "state": {
+ "psm1_joints": {
+ "start": 0,
+ "end": 6
+ },
+ "psm2_joints": {
+ "start": 6,
+ "end": 12
+ },
+ "psm1_pose": {
+ "start": 0,
+ "end": 7,
+ "original_key": "action"
+ },
+ "psm2_pose": {
+ "start": 7,
+ "end": 14,
+ "original_key": "action"
+ }
+ },
+ "action": {
+ "psm1_pose": {
+ "start": 0,
+ "end": 7
+ },
+ "psm2_pose": {
+ "start": 7,
+ "end": 14
+ }
+ },
+ "annotation": {
+ "instruction": {
+ "original_key": "instruction.text",
+ "is_text": true
+ }
+ }
+}
diff --git a/Surgical/turin/mitic_lerobot_plastic_pad/meta/percentile_stats.json b/Surgical/turin/mitic_lerobot_plastic_pad/meta/percentile_stats.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc4e757035b4a4521e1d936d69b0b59d354f578d
--- /dev/null
+++ b/Surgical/turin/mitic_lerobot_plastic_pad/meta/percentile_stats.json
@@ -0,0 +1,4322 @@
+{
+ "state": {
+ "psm1_joints": {
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+ -4.1875081062316895,
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+ "q98": [
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+ 3.102324910163878,
+ 1.1004704236984253,
+ 0.9863436067104339
+ ],
+ "q99": [
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