--- pretty_name: Observed Antibody Dataset license: cc-by-4.0 configs: - config_name: default features: # Metadata fields - name: meta_Run dtype: string - name: meta_Link dtype: string - name: meta_Author dtype: string - name: meta_Species dtype: string - name: meta_Age dtype: string - name: meta_BSource dtype: string - name: meta_BType dtype: string - name: meta_Vaccine dtype: string - name: meta_Disease dtype: string - name: meta_Subject dtype: string - name: meta_Longitudinal dtype: string - name: meta_Unique sequences dtype: int64 - name: meta_Isotype dtype: string - name: meta_Chain dtype: string - name: source_file dtype: string # Heavy chain fields - name: sequence_id_heavy dtype: string - name: sequence_heavy dtype: string - name: locus_heavy dtype: string - name: stop_codon_heavy dtype: string - name: vj_in_frame_heavy dtype: string - name: v_frameshift_heavy dtype: string - name: productive_heavy dtype: string - name: rev_comp_heavy dtype: string - name: complete_vdj_heavy dtype: string - name: v_call_heavy dtype: string - name: d_call_heavy dtype: string - name: j_call_heavy dtype: string - name: sequence_alignment_heavy dtype: string - name: germline_alignment_heavy dtype: string - name: sequence_alignment_aa_heavy dtype: string - name: germline_alignment_aa_heavy dtype: string - name: v_alignment_start_heavy dtype: string - name: v_alignment_end_heavy dtype: string - name: d_alignment_start_heavy dtype: string - name: d_alignment_end_heavy dtype: string - name: j_alignment_start_heavy dtype: string - name: j_alignment_end_heavy dtype: string - name: v_sequence_alignment_heavy dtype: string - name: v_sequence_alignment_aa_heavy dtype: string - name: v_germline_alignment_heavy dtype: string - name: v_germline_alignment_aa_heavy dtype: string - name: d_sequence_alignment_heavy dtype: string - name: d_sequence_alignment_aa_heavy dtype: string - name: d_germline_alignment_heavy dtype: string - name: d_germline_alignment_aa_heavy dtype: string - name: j_sequence_alignment_heavy dtype: string - name: j_sequence_alignment_aa_heavy dtype: string - name: j_germline_alignment_heavy dtype: string - name: j_germline_alignment_aa_heavy dtype: string - name: fwr1_heavy dtype: string - name: fwr1_aa_heavy dtype: string - name: cdr1_heavy dtype: string - name: cdr1_aa_heavy dtype: string - name: fwr2_heavy dtype: string - name: fwr2_aa_heavy dtype: string - name: cdr2_heavy dtype: string - name: cdr2_aa_heavy dtype: string - name: fwr3_heavy dtype: string - name: fwr3_aa_heavy dtype: string - name: fwr4_heavy dtype: string - name: fwr4_aa_heavy dtype: string - name: cdr3_heavy dtype: string - name: cdr3_aa_heavy dtype: string - name: junction_heavy dtype: string - name: junction_length_heavy dtype: string - name: junction_aa_heavy dtype: string - name: junction_aa_length_heavy dtype: string - name: v_score_heavy dtype: string - name: d_score_heavy dtype: string - name: j_score_heavy dtype: string - name: v_cigar_heavy dtype: string - name: d_cigar_heavy dtype: string - name: j_cigar_heavy dtype: string - name: v_support_heavy dtype: string - name: d_support_heavy dtype: string - name: j_support_heavy dtype: string - name: v_identity_heavy dtype: string - name: d_identity_heavy dtype: string - name: j_identity_heavy dtype: string - name: v_sequence_start_heavy dtype: string - name: v_sequence_end_heavy dtype: string - name: v_germline_start_heavy dtype: string - name: v_germline_end_heavy dtype: string - name: d_sequence_start_heavy dtype: string - name: d_sequence_end_heavy dtype: string - name: d_germline_start_heavy dtype: string - name: d_germline_end_heavy dtype: string - name: j_sequence_start_heavy dtype: string - name: j_sequence_end_heavy dtype: string - name: j_germline_start_heavy dtype: string - name: j_germline_end_heavy dtype: string - name: fwr1_start_heavy dtype: string - name: fwr1_end_heavy dtype: string - name: cdr1_start_heavy dtype: string - name: cdr1_end_heavy dtype: string - name: fwr2_start_heavy dtype: string - name: fwr2_end_heavy dtype: string - name: cdr2_start_heavy dtype: string - name: cdr2_end_heavy dtype: string - name: fwr3_start_heavy dtype: string - name: fwr3_end_heavy dtype: string - name: fwr4_start_heavy dtype: string - name: fwr4_end_heavy dtype: string - name: cdr3_start_heavy dtype: string - name: cdr3_end_heavy dtype: string - name: np1_heavy dtype: string - name: np1_length_heavy dtype: string - name: np2_heavy dtype: string - name: np2_length_heavy dtype: string - name: c_region_heavy dtype: string - name: Isotype_heavy dtype: string - name: Redundancy_heavy dtype: string - name: ANARCI_numbering_heavy dtype: string - name: ANARCI_status_heavy dtype: string # Light chain fields - name: sequence_id_light dtype: string - name: sequence_light dtype: string - name: locus_light dtype: string - name: stop_codon_light dtype: string - name: vj_in_frame_light dtype: string - name: v_frameshift_light dtype: string - name: productive_light dtype: string - name: rev_comp_light dtype: string - name: complete_vdj_light dtype: string - name: v_call_light dtype: string - name: d_call_light dtype: string - name: j_call_light dtype: string - name: sequence_alignment_light dtype: string - name: germline_alignment_light dtype: string - name: sequence_alignment_aa_light dtype: string - name: germline_alignment_aa_light dtype: string - name: v_alignment_start_light dtype: string - name: v_alignment_end_light dtype: string - name: d_alignment_start_light dtype: string - name: d_alignment_end_light dtype: string - name: j_alignment_start_light dtype: string - name: j_alignment_end_light dtype: string - name: v_sequence_alignment_light dtype: string - name: v_sequence_alignment_aa_light dtype: string - name: v_germline_alignment_light dtype: string - name: v_germline_alignment_aa_light dtype: string - name: d_sequence_alignment_light dtype: string - name: d_sequence_alignment_aa_light dtype: string - name: d_germline_alignment_light dtype: string - name: d_germline_alignment_aa_light dtype: string - name: j_sequence_alignment_light dtype: string - name: j_sequence_alignment_aa_light dtype: string - name: j_germline_alignment_light dtype: string - name: j_germline_alignment_aa_light dtype: string - name: fwr1_light dtype: string - name: fwr1_aa_light dtype: string - name: cdr1_light dtype: string - name: cdr1_aa_light dtype: string - name: fwr2_light dtype: string - name: fwr2_aa_light dtype: string - name: cdr2_light dtype: string - name: cdr2_aa_light dtype: string - name: fwr3_light dtype: string - name: fwr3_aa_light dtype: string - name: fwr4_light dtype: string - name: fwr4_aa_light dtype: string - name: cdr3_light dtype: string - name: cdr3_aa_light dtype: string - name: junction_light dtype: string - name: junction_length_light dtype: string - name: junction_aa_light dtype: string - name: junction_aa_length_light dtype: string - name: v_score_light dtype: string - name: d_score_light dtype: string - name: j_score_light dtype: string - name: v_cigar_light dtype: string - name: d_cigar_light dtype: string - name: j_cigar_light dtype: string - name: v_support_light dtype: string - name: d_support_light dtype: string - name: j_support_light dtype: string - name: v_identity_light dtype: string - name: d_identity_light dtype: string - name: j_identity_light dtype: string - name: v_sequence_start_light dtype: string - name: v_sequence_end_light dtype: string - name: v_germline_start_light dtype: string - name: v_germline_end_light dtype: string - name: d_sequence_start_light dtype: string - name: d_sequence_end_light dtype: string - name: d_germline_start_light dtype: string - name: d_germline_end_light dtype: string - name: j_sequence_start_light dtype: string - name: j_sequence_end_light dtype: string - name: j_germline_start_light dtype: string - name: j_germline_end_light dtype: string - name: fwr1_start_light dtype: string - name: fwr1_end_light dtype: string - name: cdr1_start_light dtype: string - name: cdr1_end_light dtype: string - name: fwr2_start_light dtype: string - name: fwr2_end_light dtype: string - name: cdr2_start_light dtype: string - name: cdr2_end_light dtype: string - name: fwr3_start_light dtype: string - name: fwr3_end_light dtype: string - name: fwr4_start_light dtype: string - name: fwr4_end_light dtype: string - name: cdr3_start_light dtype: string - name: cdr3_end_light dtype: string - name: np1_light dtype: string - name: np1_length_light dtype: string - name: np2_light dtype: string - name: np2_length_light dtype: string - name: c_region_light dtype: string - name: Isotype_light dtype: string - name: Redundancy_light dtype: string - name: ANARCI_numbering_light dtype: string - name: ANARCI_status_light dtype: string data_files: paired/*.csv - config_name: paired features: # Metadata fields - name: meta_Run dtype: string - name: meta_Link dtype: string - name: meta_Author dtype: string - name: meta_Species dtype: string - name: meta_Age dtype: string - name: meta_BSource dtype: string - name: meta_BType dtype: string - name: meta_Vaccine dtype: string - name: meta_Disease dtype: string - name: meta_Subject dtype: string - name: meta_Longitudinal dtype: string - name: meta_Unique sequences dtype: int64 - name: meta_Isotype dtype: string - name: meta_Chain dtype: string - name: source_file dtype: string # Heavy chain fields - name: sequence_id_heavy dtype: string - name: sequence_heavy dtype: string - name: locus_heavy dtype: string - name: stop_codon_heavy dtype: string - name: vj_in_frame_heavy dtype: string - name: v_frameshift_heavy dtype: string - name: productive_heavy dtype: string - name: rev_comp_heavy dtype: string - name: complete_vdj_heavy dtype: string - name: v_call_heavy dtype: string - name: d_call_heavy dtype: string - name: j_call_heavy dtype: string - name: sequence_alignment_heavy dtype: string - name: germline_alignment_heavy dtype: string - name: sequence_alignment_aa_heavy dtype: string - name: germline_alignment_aa_heavy dtype: string - name: v_alignment_start_heavy dtype: string - name: v_alignment_end_heavy dtype: string - name: d_alignment_start_heavy dtype: string - name: d_alignment_end_heavy dtype: string - name: j_alignment_start_heavy dtype: string - name: j_alignment_end_heavy dtype: string - name: v_sequence_alignment_heavy dtype: string - name: v_sequence_alignment_aa_heavy dtype: string - name: v_germline_alignment_heavy dtype: string - name: v_germline_alignment_aa_heavy dtype: string - name: d_sequence_alignment_heavy dtype: string - name: d_sequence_alignment_aa_heavy dtype: string - name: d_germline_alignment_heavy dtype: string - name: d_germline_alignment_aa_heavy dtype: string - name: j_sequence_alignment_heavy dtype: string - name: j_sequence_alignment_aa_heavy dtype: string - name: j_germline_alignment_heavy dtype: string - name: j_germline_alignment_aa_heavy dtype: string - name: fwr1_heavy dtype: string - name: fwr1_aa_heavy dtype: string - name: cdr1_heavy dtype: string - name: cdr1_aa_heavy dtype: string - name: fwr2_heavy dtype: string - name: fwr2_aa_heavy dtype: string - name: cdr2_heavy dtype: string - name: cdr2_aa_heavy dtype: string - name: fwr3_heavy dtype: string - name: fwr3_aa_heavy dtype: string - name: fwr4_heavy dtype: string - name: fwr4_aa_heavy dtype: string - name: cdr3_heavy dtype: string - name: cdr3_aa_heavy dtype: string - name: junction_heavy dtype: string - name: junction_length_heavy dtype: string - name: junction_aa_heavy dtype: string - name: junction_aa_length_heavy dtype: string - name: v_score_heavy dtype: string - name: d_score_heavy dtype: string - name: j_score_heavy dtype: string - name: v_cigar_heavy dtype: string - name: d_cigar_heavy dtype: string - name: j_cigar_heavy dtype: string - name: v_support_heavy dtype: string - name: d_support_heavy dtype: string - name: j_support_heavy dtype: string - name: v_identity_heavy dtype: string - name: d_identity_heavy dtype: string - name: j_identity_heavy dtype: string - name: v_sequence_start_heavy dtype: string - name: v_sequence_end_heavy dtype: string - name: v_germline_start_heavy dtype: string - name: v_germline_end_heavy dtype: string - name: d_sequence_start_heavy dtype: string - name: d_sequence_end_heavy dtype: string - name: d_germline_start_heavy dtype: string - name: d_germline_end_heavy dtype: string - name: j_sequence_start_heavy dtype: string - name: j_sequence_end_heavy dtype: string - name: j_germline_start_heavy dtype: string - name: j_germline_end_heavy dtype: string - name: fwr1_start_heavy dtype: string - name: fwr1_end_heavy dtype: string - name: cdr1_start_heavy dtype: string - name: cdr1_end_heavy dtype: string - name: fwr2_start_heavy dtype: string - name: fwr2_end_heavy dtype: string - name: cdr2_start_heavy dtype: string - name: cdr2_end_heavy dtype: string - name: fwr3_start_heavy dtype: string - name: fwr3_end_heavy dtype: string - name: fwr4_start_heavy dtype: string - name: fwr4_end_heavy dtype: string - name: cdr3_start_heavy dtype: string - name: cdr3_end_heavy dtype: string - name: np1_heavy dtype: string - name: np1_length_heavy dtype: string - name: np2_heavy dtype: string - name: np2_length_heavy dtype: string - name: c_region_heavy dtype: string - name: Isotype_heavy dtype: string - name: Redundancy_heavy dtype: string - name: ANARCI_numbering_heavy dtype: string - name: ANARCI_status_heavy dtype: string # Light chain fields - name: sequence_id_light dtype: string - name: sequence_light dtype: string - name: locus_light dtype: string - name: stop_codon_light dtype: string - name: vj_in_frame_light dtype: string - name: v_frameshift_light dtype: string - name: productive_light dtype: string - name: rev_comp_light dtype: string - name: complete_vdj_light dtype: string - name: v_call_light dtype: string - name: d_call_light dtype: string - name: j_call_light dtype: string - name: sequence_alignment_light dtype: string - name: germline_alignment_light dtype: string - name: sequence_alignment_aa_light dtype: string - name: germline_alignment_aa_light dtype: string - name: v_alignment_start_light dtype: string - name: v_alignment_end_light dtype: string - name: d_alignment_start_light dtype: string - name: d_alignment_end_light dtype: string - name: j_alignment_start_light dtype: string - name: j_alignment_end_light dtype: string - name: v_sequence_alignment_light dtype: string - name: v_sequence_alignment_aa_light dtype: string - name: v_germline_alignment_light dtype: string - name: v_germline_alignment_aa_light dtype: string - name: d_sequence_alignment_light dtype: string - name: d_sequence_alignment_aa_light dtype: string - name: d_germline_alignment_light dtype: string - name: d_germline_alignment_aa_light dtype: string - name: j_sequence_alignment_light dtype: string - name: j_sequence_alignment_aa_light dtype: string - name: j_germline_alignment_light dtype: string - name: j_germline_alignment_aa_light dtype: string - name: fwr1_light dtype: string - name: fwr1_aa_light dtype: string - name: cdr1_light dtype: string - name: cdr1_aa_light dtype: string - name: fwr2_light dtype: string - name: fwr2_aa_light dtype: string - name: cdr2_light dtype: string - name: cdr2_aa_light dtype: string - name: fwr3_light dtype: string - name: fwr3_aa_light dtype: string - name: fwr4_light dtype: string - name: fwr4_aa_light dtype: string - name: cdr3_light dtype: string - name: cdr3_aa_light dtype: string - name: junction_light dtype: string - name: junction_length_light dtype: string - name: junction_aa_light dtype: string - name: junction_aa_length_light dtype: string - name: v_score_light dtype: string - name: d_score_light dtype: string - name: j_score_light dtype: string - name: v_cigar_light dtype: string - name: d_cigar_light dtype: string - name: j_cigar_light dtype: string - name: v_support_light dtype: string - name: d_support_light dtype: string - name: j_support_light dtype: string - name: v_identity_light dtype: string - name: d_identity_light dtype: string - name: j_identity_light dtype: string - name: v_sequence_start_light dtype: string - name: v_sequence_end_light dtype: string - name: v_germline_start_light dtype: string - name: v_germline_end_light dtype: string - name: d_sequence_start_light dtype: string - name: d_sequence_end_light dtype: string - name: d_germline_start_light dtype: string - name: d_germline_end_light dtype: string - name: j_sequence_start_light dtype: string - name: j_sequence_end_light dtype: string - name: j_germline_start_light dtype: string - name: j_germline_end_light dtype: string - name: fwr1_start_light dtype: string - name: fwr1_end_light dtype: string - name: cdr1_start_light dtype: string - name: cdr1_end_light dtype: string - name: fwr2_start_light dtype: string - name: fwr2_end_light dtype: string - name: cdr2_start_light dtype: string - name: cdr2_end_light dtype: string - name: fwr3_start_light dtype: string - name: fwr3_end_light dtype: string - name: fwr4_start_light dtype: string - name: fwr4_end_light dtype: string - name: cdr3_start_light dtype: string - name: cdr3_end_light dtype: string - name: np1_light dtype: string - name: np1_length_light dtype: string - name: np2_light dtype: string - name: np2_length_light dtype: string - name: c_region_light dtype: string - name: Isotype_light dtype: string - name: Redundancy_light dtype: string - name: ANARCI_numbering_light dtype: string - name: ANARCI_status_light dtype: string data_files: paired/*.csv --- # OPIG Observed Antibody Dataset (OAS) ## Filtering If you know you only want a subset of this dataset, you can load a filtered subset like this: `ds = load_dataset('OPIG/OAS', streaming=streaming, filters=[("meta_Species", "==", "human")]`.