meta_Run
stringclasses 42
values | meta_Link
stringclasses 1
value | meta_Author
stringclasses 1
value | meta_Species
stringclasses 1
value | meta_Age
stringclasses 4
values | meta_BSource
stringclasses 1
value | meta_BType
stringclasses 4
values | meta_Vaccine
stringclasses 0
values | meta_Disease
stringclasses 2
values | meta_Subject
stringclasses 4
values | meta_Longitudinal
stringclasses 1
value | meta_Unique sequences
int64 843
19.8k
| meta_Isotype
stringclasses 1
value | meta_Chain
stringclasses 1
value | source_file
stringclasses 42
values | sequence_id_heavy
stringlengths 27
27
| sequence_heavy
stringlengths 426
1.13k
| locus_heavy
stringclasses 1
value | stop_codon_heavy
stringclasses 1
value | vj_in_frame_heavy
stringclasses 1
value | v_frameshift_heavy
stringclasses 1
value | productive_heavy
stringclasses 1
value | rev_comp_heavy
stringclasses 1
value | complete_vdj_heavy
stringclasses 2
values | v_call_heavy
stringclasses 226
values | d_call_heavy
stringclasses 29
values | j_call_heavy
stringclasses 13
values | sequence_alignment_heavy
stringlengths 322
493
| germline_alignment_heavy
stringlengths 322
493
| sequence_alignment_aa_heavy
stringlengths 107
164
| germline_alignment_aa_heavy
stringlengths 107
164
| v_alignment_start_heavy
stringclasses 1
value | v_alignment_end_heavy
stringclasses 77
values | d_alignment_start_heavy
stringclasses 98
values | d_alignment_end_heavy
stringclasses 103
values | j_alignment_start_heavy
stringclasses 199
values | j_alignment_end_heavy
stringclasses 205
values | v_sequence_alignment_heavy
stringlengths 219
352
| v_sequence_alignment_aa_heavy
stringlengths 73
117
| v_germline_alignment_heavy
stringlengths 219
352
| v_germline_alignment_aa_heavy
stringlengths 73
101
| d_sequence_alignment_heavy
stringlengths 5
37
⌀ | d_sequence_alignment_aa_heavy
stringlengths 1
12
⌀ | d_germline_alignment_heavy
stringlengths 5
37
⌀ | d_germline_alignment_aa_heavy
stringlengths 1
12
⌀ | j_sequence_alignment_heavy
stringlengths 22
63
| j_sequence_alignment_aa_heavy
stringlengths 7
20
| j_germline_alignment_heavy
stringlengths 22
63
| j_germline_alignment_aa_heavy
stringclasses 194
values | fwr1_heavy
stringlengths 42
117
| fwr1_aa_heavy
stringlengths 14
39
| cdr1_heavy
stringlengths 3
72
| cdr1_aa_heavy
stringlengths 1
24
| fwr2_heavy
stringlengths 30
93
| fwr2_aa_heavy
stringlengths 10
31
| cdr2_heavy
stringlengths 4
81
| cdr2_aa_heavy
stringlengths 1
27
| fwr3_heavy
stringlengths 96
175
| fwr3_aa_heavy
stringlengths 32
58
| fwr4_heavy
stringlengths 21
36
| fwr4_aa_heavy
stringlengths 7
12
| cdr3_heavy
stringlengths 9
174
| cdr3_aa_heavy
stringlengths 3
58
| junction_heavy
stringlengths 15
180
| junction_length_heavy
stringclasses 45
values | junction_aa_heavy
stringlengths 5
60
| junction_aa_length_heavy
stringclasses 45
values | v_score_heavy
stringclasses 174
values | d_score_heavy
stringclasses 33
values | j_score_heavy
stringclasses 49
values | v_cigar_heavy
stringlengths 10
30
| d_cigar_heavy
stringlengths 10
20
⌀ | j_cigar_heavy
stringlengths 7
17
| v_support_heavy
stringlengths 5
23
| d_support_heavy
stringlengths 3
9
⌀ | j_support_heavy
stringlengths 5
22
| v_identity_heavy
stringlengths 4
6
| d_identity_heavy
stringclasses 96
values | j_identity_heavy
stringclasses 227
values | v_sequence_start_heavy
stringclasses 274
values | v_sequence_end_heavy
stringclasses 297
values | v_germline_start_heavy
stringclasses 23
values | v_germline_end_heavy
stringclasses 31
values | d_sequence_start_heavy
stringclasses 301
values | d_sequence_end_heavy
stringclasses 310
values | d_germline_start_heavy
stringclasses 33
values | d_germline_end_heavy
stringclasses 37
values | j_sequence_start_heavy
stringclasses 460
values | j_sequence_end_heavy
stringclasses 459
values | j_germline_start_heavy
stringclasses 60
values | j_germline_end_heavy
stringclasses 53
values | fwr1_start_heavy
stringclasses 274
values | fwr1_end_heavy
stringclasses 272
values | cdr1_start_heavy
stringclasses 272
values | cdr1_end_heavy
stringclasses 276
values | fwr2_start_heavy
stringclasses 276
values | fwr2_end_heavy
stringclasses 276
values | cdr2_start_heavy
stringclasses 424
values | cdr2_end_heavy
stringclasses 428
values | fwr3_start_heavy
stringclasses 274
values | fwr3_end_heavy
stringclasses 275
values | fwr4_start_heavy
stringclasses 309
values | fwr4_end_heavy
stringclasses 308
values | cdr3_start_heavy
stringclasses 275
values | cdr3_end_heavy
stringclasses 309
values | np1_heavy
stringlengths 1
90
⌀ | np1_length_heavy
stringclasses 121
values | np2_heavy
stringlengths 1
146
⌀ | np2_length_heavy
stringclasses 76
values | c_region_heavy
stringlengths 1
490
⌀ | Isotype_heavy
stringclasses 6
values | Redundancy_heavy
stringclasses 1
value | ANARCI_numbering_heavy
stringlengths 848
2.11k
| ANARCI_status_heavy
stringclasses 451
values | sequence_id_light
stringlengths 27
27
| sequence_light
stringlengths 389
1.33k
| locus_light
stringclasses 3
values | stop_codon_light
stringclasses 1
value | vj_in_frame_light
stringclasses 1
value | v_frameshift_light
stringclasses 1
value | productive_light
stringclasses 1
value | rev_comp_light
stringclasses 2
values | complete_vdj_light
stringclasses 2
values | v_call_light
stringclasses 122
values | d_call_light
stringclasses 2
values | j_call_light
stringclasses 16
values | sequence_alignment_light
stringlengths 296
378
| germline_alignment_light
stringlengths 296
378
| sequence_alignment_aa_light
stringlengths 98
126
| germline_alignment_aa_light
stringlengths 98
126
| v_alignment_start_light
stringclasses 1
value | v_alignment_end_light
stringclasses 65
values | d_alignment_start_light
stringclasses 2
values | d_alignment_end_light
stringclasses 2
values | j_alignment_start_light
stringclasses 113
values | j_alignment_end_light
stringclasses 121
values | v_sequence_alignment_light
stringlengths 261
338
| v_sequence_alignment_aa_light
stringlengths 86
112
| v_germline_alignment_light
stringlengths 261
338
| v_germline_alignment_aa_light
stringlengths 87
106
| d_sequence_alignment_light
stringclasses 2
values | d_sequence_alignment_aa_light
stringclasses 2
values | d_germline_alignment_light
stringclasses 2
values | d_germline_alignment_aa_light
stringclasses 2
values | j_sequence_alignment_light
stringlengths 7
58
| j_sequence_alignment_aa_light
stringlengths 2
19
| j_germline_alignment_light
stringclasses 710
values | j_germline_alignment_aa_light
stringclasses 146
values | fwr1_light
stringlengths 60
108
| fwr1_aa_light
stringlengths 20
36
| cdr1_light
stringlengths 6
66
| cdr1_aa_light
stringlengths 2
22
| fwr2_light
stringlengths 43
78
| fwr2_aa_light
stringlengths 14
26
| cdr2_light
stringlengths 1
42
⌀ | cdr2_aa_light
stringlengths 2
14
⌀ | fwr3_light
stringlengths 87
159
| fwr3_aa_light
stringlengths 29
53
| fwr4_light
stringlengths 13
33
⌀ | fwr4_aa_light
stringlengths 4
11
⌀ | cdr3_light
stringlengths 12
69
| cdr3_aa_light
stringlengths 4
23
| junction_light
stringlengths 18
75
| junction_length_light
stringclasses 19
values | junction_aa_light
stringlengths 6
25
| junction_aa_length_light
stringclasses 19
values | v_score_light
stringclasses 164
values | d_score_light
stringclasses 2
values | j_score_light
stringclasses 31
values | v_cigar_light
stringlengths 10
25
| d_cigar_light
stringclasses 2
values | j_cigar_light
stringlengths 7
16
| v_support_light
stringlengths 5
23
| d_support_light
stringclasses 2
values | j_support_light
stringlengths 5
9
| v_identity_light
stringlengths 4
6
| d_identity_light
stringclasses 1
value | j_identity_light
stringclasses 87
values | v_sequence_start_light
stringclasses 300
values | v_sequence_end_light
stringclasses 321
values | v_germline_start_light
stringclasses 13
values | v_germline_end_light
stringclasses 56
values | d_sequence_start_light
stringclasses 2
values | d_sequence_end_light
stringclasses 2
values | d_germline_start_light
stringclasses 2
values | d_germline_end_light
stringclasses 2
values | j_sequence_start_light
stringclasses 453
values | j_sequence_end_light
stringclasses 453
values | j_germline_start_light
stringclasses 20
values | j_germline_end_light
stringclasses 37
values | fwr1_start_light
stringclasses 300
values | fwr1_end_light
stringclasses 300
values | cdr1_start_light
stringclasses 300
values | cdr1_end_light
stringclasses 301
values | fwr2_start_light
stringclasses 301
values | fwr2_end_light
stringclasses 301
values | cdr2_start_light
stringclasses 475
values | cdr2_end_light
stringclasses 473
values | fwr3_start_light
stringclasses 300
values | fwr3_end_light
stringclasses 300
values | fwr4_start_light
stringclasses 311
values | fwr4_end_light
stringclasses 313
values | cdr3_start_light
stringclasses 300
values | cdr3_end_light
stringclasses 311
values | np1_light
stringlengths 1
44
⌀ | np1_length_light
stringclasses 70
values | np2_light
stringclasses 2
values | np2_length_light
stringclasses 2
values | c_region_light
stringlengths 1
516
⌀ | Isotype_light
stringclasses 2
values | Redundancy_light
stringclasses 1
value | ANARCI_numbering_light
stringlengths 920
1.61k
| ANARCI_status_light
stringclasses 128
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGAGACACGAC-1_contig_2
|
GGGAGCATCACCCAGCAACCACATCTGTCCTCTAGAGAATCCCCTGAGAGCTCCGTTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCCACAGGAGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGCAGGAGCAGTGGCTGCCTCCAAGGGTTATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-2*02
|
IGHD6-19*01
|
IGHJ6*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGCAGGAGCAGTGGCTGCCTCCAAGGGTTATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGNNNNAGCAGTGGCTGNNNNNNNNNNNNATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARAGAVAASKGYYYYYYGMDVWGQGTTVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARXXAVAXXXXXYYYYYGMDVWGQGTTVTVSS
|
1
|
295
|
300.0
|
310.0
|
323
|
384
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
AGCAGTGGCTG
|
AVA
|
AGCAGTGGCTG
|
AVA
|
ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYYGMDVWGQGTTVTVSS
|
ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYYGMDVWGQGTTVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCGGCTACTAT
|
GYTFTGYY
|
ATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGG
|
MHWVRQAPGQGLEWMGW
|
ATCAACCCTAACAGTGGTGGCACA
|
INPNSGGT
|
AACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAGAGCAGGAGCAGTGGCTGCCTCCAAGGGTTATTACTACTACTACTACGGTATGGACGTC
|
ARAGAVAASKGYYYYYYGMDV
|
TGTGCGAGAGCAGGAGCAGTGGCTGCCTCCAAGGGTTATTACTACTACTACTACGGTATGGACGTCTGG
|
69.0
|
CARAGAVAASKGYYYYYYGMDVW
|
23.0
|
461.479
|
21.837
|
119.894
|
121S295M161S1N
|
420S6N11M146S4N
|
443S62M72S
|
8.075e-132
|
0.06902
|
4.551e-31
|
100.0
|
100.0
|
100.0
|
122
|
416
|
1
|
295
|
421.0
|
431.0
|
7.0
|
17.0
|
444
|
505
|
1
|
62
|
122
|
196
|
197
|
220
|
221
|
271
|
272
|
295
|
296
|
409
|
473.0
|
505.0
|
410.0
|
472.0
|
CAGG
|
4
|
CCTCCAAGGGTT
|
12.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'G', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'G', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'R', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'D', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'A', '108 ': 'G', '109 ': 'A', '110 ': 'V', '111 ': 'A', '111A': 'A', '111B': 'S', '111C': 'K', '111D': 'G', '112D': 'Y', '112C': 'Y', '112B': 'Y', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGAGACACGAC-1_contig_1
|
GCTGCGGGTAGAGAAGACAGGACTCAGGACAATCTCCAGCATGGCCTGGTCCCCTCTCTTCCTCACCCTCATCACTCACTGTGCAGGGTCCTGGGCCCAGTCTGTGCTGACTCAGCCACCCTCGGTGTCTGAAGCCCCCAGGCAGAGGGTCACCATCTCCTGTTCTGGAAGCAGCTCCAACATCGGAAATAATGCTGTAAACTGGTACCAGCAGCTCCCAGGAAAGGCTCCCAAACTCCTCATCTATTATGATGATCTGCTGCCCTCAGGGGTCTCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAATGTTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV1-36*01
| null |
IGLJ2*01
|
CAGTCTGTGCTGACTCAGCCACCCTCGGTGTCTGAAGCCCCCAGGCAGAGGGTCACCATCTCCTGTTCTGGAAGCAGCTCCAACATCGGAAATAATGCTGTAAACTGGTACCAGCAGCTCCCAGGAAAGGCTCCCAAACTCCTCATCTATTATGATGATCTGCTGCCCTCAGGGGTCTCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAATGTTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGTGCTGACTCAGCCACCCTCGGTGTCTGAAGCCCCCAGGCAGAGGGTCACCATCTCCTGTTCTGGAAGCAGCTCCAACATCGGAAATAATGCTGTAAACTGGTACCAGCAGCTCCCAGGAAAGGCTCCCAAACTCCTCATCTATTATGATGATCTGCTGCCCTCAGGGGTCTCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAATGNTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSVLTQPPSVSEAPRQRVTISCSGSSSNIGNNAVNWYQQLPGKAPKLLIYYDDLLPSGVSDRFSGSKSGTSASLAISGLQSEDEADYYCAAWDDSLNVVVFGGGTKLTVL
|
QSVLTQPPSVSEAPRQRVTISCSGSSSNIGNNAVNWYQQLPGKAPKLLIYYDDLLPSGVSDRFSGSKSGTSASLAISGLQSEDEADYYCAAWDDSLNXVVFGGGTKLTVL
|
1
|
292
| null | null |
294
|
331
|
CAGTCTGTGCTGACTCAGCCACCCTCGGTGTCTGAAGCCCCCAGGCAGAGGGTCACCATCTCCTGTTCTGGAAGCAGCTCCAACATCGGAAATAATGCTGTAAACTGGTACCAGCAGCTCCCAGGAAAGGCTCCCAAACTCCTCATCTATTATGATGATCTGCTGCCCTCAGGGGTCTCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAATG
|
QSVLTQPPSVSEAPRQRVTISCSGSSSNIGNNAVNWYQQLPGKAPKLLIYYDDLLPSGVSDRFSGSKSGTSASLAISGLQSEDEADYYCAAWDDSLN
|
CAGTCTGTGCTGACTCAGCCACCCTCGGTGTCTGAAGCCCCCAGGCAGAGGGTCACCATCTCCTGTTCTGGAAGCAGCTCCAACATCGGAAATAATGCTGTAAACTGGTACCAGCAGCTCCCAGGAAAGGCTCCCAAACTCCTCATCTATTATGATGATCTGCTGCCCTCAGGGGTCTCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAATG
|
QSVLTQPPSVSEAPRQRVTISCSGSSSNIGNNAVNWYQQLPGKAPKLLIYYDDLLPSGVSDRFSGSKSGTSASLAISGLQSEDEADYYCAAWDDSLN
| null | null | null | null |
TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
CAGTCTGTGCTGACTCAGCCACCCTCGGTGTCTGAAGCCCCCAGGCAGAGGGTCACCATCTCCTGTTCTGGAAGC
|
QSVLTQPPSVSEAPRQRVTISCSGS
|
AGCTCCAACATCGGAAATAATGCT
|
SSNIGNNA
|
GTAAACTGGTACCAGCAGCTCCCAGGAAAGGCTCCCAAACTCCTCATCTAT
|
VNWYQQLPGKAPKLLIY
|
TATGATGAT
|
YDD
|
CTGCTGCCCTCAGGGGTCTCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGT
|
LLPSGVSDRFSGSKSGTSASLAISGLQSEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
GCAGCATGGGATGACAGCCTGAATGTTGTGGTA
|
AAWDDSLNVVV
|
TGTGCAGCATGGGATGACAGCCTGAATGTTGTGGTATTC
|
39.0
|
CAAWDDSLNVVVF
|
13.0
|
456.805
| null |
73.749
|
97S292M250S4N
| null |
390S38M211S
|
2.295e-130
| null |
3.927e-17
|
100.0
| null |
100.0
|
98
|
389
|
1
|
292
| null | null | null | null |
391
|
428
|
1
|
38
|
98
|
172
|
173
|
196
|
197
|
247
|
248
|
256
|
257
|
364
|
398.0
|
427.0
|
365.0
|
397.0
|
T
|
1
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'E', '14 ': 'A', '15 ': 'P', '16 ': 'R', '17 ': 'Q', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'S'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'N', '30 ': 'I', '35 ': 'G', '36 ': 'N', '37 ': 'N', '38 ': 'A'}, 'fwl2': {'39 ': 'V', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'L', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'Y', '57 ': 'D', '65 ': 'D'}, 'fwl3': {'66 ': 'L', '67 ': 'L', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'S', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'S', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'A', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'A', '106 ': 'A', '107 ': 'W', '108 ': 'D', '109 ': 'D', '110 ': 'S', '113 ': 'L', '114 ': 'N', '115 ': 'V', '116 ': 'V', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGAGACCACGA-1_contig_2
|
GGGAGCATCACCCAGCAACCACATCTGTCCTCTAGAGAATCCCCTGAGAGCTCCGTTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCCACAGGAGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGACAGTCTATCCGCTTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-2*02
| null |
IGHJ4*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGACAGTCTATCCGCTTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGANNNNNNNNNNNNNTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDSLSAWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARXXXXXWGQGTLVTVSS
|
1
|
296
| null | null |
310
|
343
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
| null | null | null | null |
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WGQGTLVTVSS
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCGGCTACTAT
|
GYTFTGYY
|
ATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGG
|
MHWVRQAPGQGLEWMGW
|
ATCAACCCTAACAGTGGTGGCACA
|
INPNSGGT
|
AACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGACAGTCTATCCGCT
|
ARDSLSA
|
TGTGCGAGAGACAGTCTATCCGCTTGG
|
27.0
|
CARDSLSAW
|
9.0
|
463.037
| null |
66.059
|
121S296M118S
| null |
430S14N34M71S
|
2.547e-132
| null |
6.77e-15
|
100.0
| null |
100.0
|
122
|
417
|
1
|
296
| null | null | null | null |
431
|
464
|
15
|
48
|
122
|
196
|
197
|
220
|
221
|
271
|
272
|
295
|
296
|
409
|
431.0
|
463.0
|
410.0
|
430.0
|
CAGTCTATCCGCT
|
13
| null | null |
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'G', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'G', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'R', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'D', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'D', '108 ': 'S', '115 ': 'L', '116 ': 'S', '117 ': 'A'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGAGACCACGA-1_contig_1
|
AGCTTCAGCTGTGGGTAGAGAAGACAGGACTCAGGACAATCTCCAGCATGGCCAGCTTCCCTCTCCTCCTCACCCTCCTCACTCACTGTGCAGGGTCCTGGGCCCAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATACTGTAAACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGTAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAATGGTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV1-44*01
| null |
IGLJ3*02
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATACTGTAAACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGTAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAATGGTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATACTGTAAACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGTAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAATGGTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNTVNWYQQLPGTAPKLLIYSNNQRPSGVPDRFSGSKSGTSASLAISGLQSEDEADYYCAAWDDSLNGWVFGGGTKLTVL
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNTVNWYQQLPGTAPKLLIYSNNQRPSGVPDRFSGSKSGTSASLAISGLQSEDEADYYCAAWDDSLNGWVFGGGTKLTVL
|
1
|
294
| null | null |
295
|
331
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATACTGTAAACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGTAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAATGGT
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNTVNWYQQLPGTAPKLLIYSNNQRPSGVPDRFSGSKSGTSASLAISGLQSEDEADYYCAAWDDSLNG
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATACTGTAAACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGTAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAATGGT
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNTVNWYQQLPGTAPKLLIYSNNQRPSGVPDRFSGSKSGTSASLAISGLQSEDEADYYCAAWDDSLNG
| null | null | null | null |
TGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
TGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGC
|
QSVLTQPPSASGTPGQRVTISCSGS
|
AGCTCCAACATCGGAAGTAATACT
|
SSNIGSNT
|
GTAAACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTAT
|
VNWYQQLPGTAPKLLIY
|
AGTAATAAT
|
SNN
|
CAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGT
|
QRPSGVPDRFSGSKSGTSASLAISGLQSEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
GCAGCATGGGATGACAGCCTGAATGGTTGGGTG
|
AAWDDSLNGWV
|
TGTGCAGCATGGGATGACAGCCTGAATGGTTGGGTGTTC
|
39.0
|
CAAWDDSLNGWVF
|
13.0
|
459.921
| null |
71.827
|
104S294M248S2N
| null |
398S1N37M211S
|
2.6770000000000004e-131
| null |
1.506e-16
|
100.0
| null |
100.0
|
105
|
398
|
1
|
294
| null | null | null | null |
399
|
435
|
2
|
38
|
105
|
179
|
180
|
203
|
204
|
254
|
255
|
263
|
264
|
371
|
405.0
|
434.0
|
372.0
|
404.0
| null |
0
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'A', '12 ': 'S', '13 ': 'G', '14 ': 'T', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'S'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'N', '30 ': 'I', '35 ': 'G', '36 ': 'S', '37 ': 'N', '38 ': 'T'}, 'fwl2': {'39 ': 'V', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'L', '46 ': 'P', '47 ': 'G', '48 ': 'T', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'S', '57 ': 'N', '65 ': 'N'}, 'fwl3': {'66 ': 'Q', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'S', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'A', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'A', '106 ': 'A', '107 ': 'W', '108 ': 'D', '109 ': 'D', '110 ': 'S', '113 ': 'L', '114 ': 'N', '115 ': 'G', '116 ': 'W', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGAGACTGGGT-1_contig_1
|
CCACATCCCTCCTCAGAAGCCCCCAGAGCACAACTCCTTACCATGGACTGGACCTGGAGGATCCTCTTTTTGGTGGCAGCAGCCACAGGTGCCCACTCCCAGGTCCAGCTTGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCTTCTGGATACACCTTCACTAGCTATGCTATGCATTGGGTGCGCCAGGCCCCCGGACAAAGGCTTGAGTGGATGGGATGGATCAACGCTGGCAATGGTAACACAAAATATTCACAGAAGTTCCAGGGCAGAGTCACCATTACCAGGGACACATCCGCGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAAGACACGGCTGTGTATTACTGTGCGAGAAGCTCGGACTACGGTGCCGACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-3*01
|
IGHD4-17*01
|
IGHJ6*02
|
CAGGTCCAGCTTGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCTTCTGGATACACCTTCACTAGCTATGCTATGCATTGGGTGCGCCAGGCCCCCGGACAAAGGCTTGAGTGGATGGGATGGATCAACGCTGGCAATGGTAACACAAAATATTCACAGAAGTTCCAGGGCAGAGTCACCATTACCAGGGACACATCCGCGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAAGACACGGCTGTGTATTACTGTGCGAGAAGCTCGGACTACGGTGCCGACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTCCAGCTTGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCTTCTGGATACACCTTCACTAGCTATGCTATGCATTGGGTGCGCCAGGCCCCCGGACAAAGGCTTGAGTGGATGGGATGGATCAACGCTGGCAATGGTAACACAAAATATTCACAGAAGTTCCAGGGCAGAGTCACCATTACCAGGGACACATCCGCGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAAGACACGGCTGTGTATTACTGTGCGAGANNNNNNGACTACGGTGNNNACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRVTITRDTSASTAYMELSSLRSEDTAVYYCARSSDYGADYYYYGMDVWGQGTTVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRVTITRDTSASTAYMELSSLRSEDTAVYYCARXXDYGXXYYYYGMDVWGQGTTVTVSS
|
1
|
294
|
301.0
|
310.0
|
314
|
372
|
CAGGTCCAGCTTGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCTTCTGGATACACCTTCACTAGCTATGCTATGCATTGGGTGCGCCAGGCCCCCGGACAAAGGCTTGAGTGGATGGGATGGATCAACGCTGGCAATGGTAACACAAAATATTCACAGAAGTTCCAGGGCAGAGTCACCATTACCAGGGACACATCCGCGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAAGACACGGCTGTGTATTACTGTGCGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRVTITRDTSASTAYMELSSLRSEDTAVYYCAR
|
CAGGTCCAGCTTGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCTTCTGGATACACCTTCACTAGCTATGCTATGCATTGGGTGCGCCAGGCCCCCGGACAAAGGCTTGAGTGGATGGGATGGATCAACGCTGGCAATGGTAACACAAAATATTCACAGAAGTTCCAGGGCAGAGTCACCATTACCAGGGACACATCCGCGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAAGACACGGCTGTGTATTACTGTGCGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRVTITRDTSASTAYMELSSLRSEDTAVYYCAR
|
GACTACGGTG
|
DYG
|
GACTACGGTG
|
DYG
|
ACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
ACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
CAGGTCCAGCTTGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACTAGCTATGCT
|
GYTFTSYA
|
ATGCATTGGGTGCGCCAGGCCCCCGGACAAAGGCTTGAGTGGATGGGATGG
|
MHWVRQAPGQRLEWMGW
|
ATCAACGCTGGCAATGGTAACACA
|
INAGNGNT
|
AAATATTCACAGAAGTTCCAGGGCAGAGTCACCATTACCAGGGACACATCCGCGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAAGACACGGCTGTGTATTACTGT
|
KYSQKFQGRVTITRDTSASTAYMELSSLRSEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAGAAGCTCGGACTACGGTGCCGACTACTACTACTACGGTATGGACGTC
|
ARSSDYGADYYYYGMDV
|
TGTGCGAGAAGCTCGGACTACGGTGCCGACTACTACTACTACGGTATGGACGTCTGG
|
57.0
|
CARSSDYGADYYYYGMDVW
|
19.0
|
459.921
|
19.914
|
114.126
|
99S294M150S2N
|
399S1N10M134S5N
|
412S3N59M72S
|
2.2430000000000002e-131
|
0.246
|
2.331e-29
|
100.0
|
100.0
|
100.0
|
100
|
393
|
1
|
294
|
400.0
|
409.0
|
2.0
|
11.0
|
413
|
471
|
4
|
62
|
100
|
174
|
175
|
198
|
199
|
249
|
250
|
273
|
274
|
387
|
439.0
|
471.0
|
388.0
|
438.0
|
AGCTCG
|
6
|
CCG
|
3.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'R', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'A', '59 ': 'G', '62 ': 'N', '63 ': 'G', '64 ': 'N', '65 ': 'T'}, 'fwh3': {'66 ': 'K', '67 ': 'Y', '68 ': 'S', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'A', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'S', '108 ': 'S', '109 ': 'D', '110 ': 'Y', '111 ': 'G', '111A': 'A', '111B': 'D', '112B': 'Y', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGAGACTGGGT-1_contig_2
|
GCTGTGCTGTGGGTCCAGGAGGCAGAACTCTGGGTGTCTCACCATGGCCTGGATCCCTCTACTTCTCCCCCTCCTCACTCTCTGCACAGGCTCTGAGGCCTCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAGGTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-25*03
| null |
IGLJ1*01
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGTYVFGTGTKVTVL
|
SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGTYVFGTGTKVTVL
|
1
|
288
| null | null |
289
|
322
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTTAT
|
SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGTY
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTTAT
|
SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGTY
| null | null | null | null |
GTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
VFGTGTKVTVL
|
GTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
VFGTGTKVTVL
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGAT
|
SYELTQPPSVSVSPGQTARITCSGD
|
GCATTGCCAAAGCAATAT
|
ALPKQY
|
GCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATAT
|
AYWYQQKPGQAPVLVIY
|
AAAGACAGT
|
KDS
|
GAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGT
|
ERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYC
|
TTCGGAACTGGGACCAAGGTCACCGTCCTA
|
FGTGTKVTVL
|
CAATCAGCAGACAGCAGTGGTACTTATGTC
|
QSADSSGTYV
|
TGTCAATCAGCAGACAGCAGTGGTACTTATGTCTTC
|
36.0
|
CQSADSSGTYVF
|
12.0
|
450.572
| null |
66.059
|
100S288M245S2N
| null |
388S4N34M211S
|
1.7090000000000002e-128
| null |
8.037e-15
|
100.0
| null |
100.0
|
101
|
388
|
1
|
288
| null | null | null | null |
389
|
422
|
5
|
38
|
101
|
175
|
176
|
193
|
194
|
244
|
245
|
253
|
254
|
361
|
392.0
|
421.0
|
362.0
|
391.0
| null |
0
| null | null |
GTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'E', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'R', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'D'}, 'cdrl1': {'27 ': 'A', '28 ': 'L', '29 ': 'P', '36 ': 'K', '37 ': 'Q', '38 ': 'Y'}, 'fwl2': {'39 ': 'A', '40 ': 'Y', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'K', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'E', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'S', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'T', '87 ': 'V', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'V', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'S', '107 ': 'A', '108 ': 'D', '109 ': 'S', '113 ': 'S', '114 ': 'G', '115 ': 'T', '116 ': 'Y', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'T', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGAGCGTCTAT-1_contig_1
|
AGCTCTGGGAGAGGAGCCCCAGCCTTGGGATTCCCAAGTGTTTTCATTCAGTGATCAGGACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGATTTTCCTTGCTGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGATCTAAGTCTACACCATGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-15*01
|
IGHD4-4*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGATCTAAGTCTACACCATGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGANNNNNNNCTACANNNTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTDLSLHHDYWGQGTLVTVSS
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTXXXLXXDYWGQGTLVTVSS
|
1
|
302
|
310.0
|
314.0
|
318
|
358
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTT
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTT
|
CTACA
|
L
|
CTACA
|
L
|
TGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
TGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVKPGGSLRLSCAAS
|
GGATTCACTTTCAGTAACGCCTGG
|
GFTFSNAW
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGT
|
MSWVRQAPGKGLEWVGR
|
ATTAAAAGCAAAACTGATGGTGGGACAACA
|
IKSKTDGGTT
|
GACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGT
|
DYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
ACCACAGATCTAAGTCTACACCATGACTAC
|
TTDLSLHHDY
|
TGTACCACAGATCTAAGTCTACACCATGACTACTGG
|
36.0
|
CTTDLSLHHDYW
|
12.0
|
472.386
|
10.301
|
79.518
|
137S302M127S
|
446S3N5M115S8N
|
454S7N41M71S
|
4.145e-135
|
201.0
|
6.369e-19
|
100.0
|
100.0
|
100.0
|
138
|
439
|
1
|
302
|
447.0
|
451.0
|
4.0
|
8.0
|
455
|
495
|
8
|
48
|
138
|
212
|
213
|
236
|
237
|
287
|
288
|
317
|
318
|
431
|
462.0
|
494.0
|
432.0
|
461.0
|
TCTAAGT
|
7
|
CCA
|
3.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'N', '37 ': 'A', '38 ': 'W'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'K', '58 ': 'S', '59 ': 'K', '60 ': 'T', '61 ': 'D', '62 ': 'G', '63 ': 'G', '64 ': 'T', '65 ': 'T'}, 'fwh3': {'66 ': 'D', '67 ': 'Y', '68 ': 'A', '69 ': 'A', '70 ': 'P', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'D', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'K', '96 ': 'T', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'T', '106 ': 'T', '107 ': 'D', '108 ': 'L', '109 ': 'S', '113 ': 'L', '114 ': 'H', '115 ': 'H', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGAGCGTCTAT-1_contig_2
|
GTGGGCTCAGGAGGCAGAGCTCTGGGAATCTCACCATGGCCTGGACCCCTCTCCTGCTCCCCCTCCTCACTTTCTGCACAGTCTCTGAGGCCTCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAAACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAAAAATATGCTTATTGGTACCAGCAGAAGTCAGGCCAGGCCCCTGTGCTGGTCATCTATGAGGACAGCAAACGACCCTCCGGGATCCCTGAGAGATTCTCTGGCTCCAGCTCAGGGACAATGGCCACCTTGACTATCAGTGGGGCCCAGGTGGAGGATGAAGCTGACTACTACTGTTACTCAACAGACAGCAGTGGTAATCATTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-10*01
| null |
IGLJ3*02
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAAACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAAAAATATGCTTATTGGTACCAGCAGAAGTCAGGCCAGGCCCCTGTGCTGGTCATCTATGAGGACAGCAAACGACCCTCCGGGATCCCTGAGAGATTCTCTGGCTCCAGCTCAGGGACAATGGCCACCTTGACTATCAGTGGGGCCCAGGTGGAGGATGAAGCTGACTACTACTGTTACTCAACAGACAGCAGTGGTAATCATTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAAACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAAAAATATGCTTATTGGTACCAGCAGAAGTCAGGCCAGGCCCCTGTGCTGGTCATCTATGAGGACAGCAAACGACCCTCCGGGATCCCTGAGAGATTCTCTGGCTCCAGCTCAGGGACAATGGCCACCTTGACTATCAGTGGGGCCCAGGTGGAGGATGAAGCTGACTACTACTGTTACTCAACAGACAGCAGTGGTAATCATTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SYELTQPPSVSVSPGQTARITCSGDALPKKYAYWYQQKSGQAPVLVIYEDSKRPSGIPERFSGSSSGTMATLTISGAQVEDEADYYCYSTDSSGNHWVFGGGTKLTVL
|
SYELTQPPSVSVSPGQTARITCSGDALPKKYAYWYQQKSGQAPVLVIYEDSKRPSGIPERFSGSSSGTMATLTISGAQVEDEADYYCYSTDSSGNHWVFGGGTKLTVL
|
1
|
288
| null | null |
289
|
325
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAAACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAAAAATATGCTTATTGGTACCAGCAGAAGTCAGGCCAGGCCCCTGTGCTGGTCATCTATGAGGACAGCAAACGACCCTCCGGGATCCCTGAGAGATTCTCTGGCTCCAGCTCAGGGACAATGGCCACCTTGACTATCAGTGGGGCCCAGGTGGAGGATGAAGCTGACTACTACTGTTACTCAACAGACAGCAGTGGTAATCAT
|
SYELTQPPSVSVSPGQTARITCSGDALPKKYAYWYQQKSGQAPVLVIYEDSKRPSGIPERFSGSSSGTMATLTISGAQVEDEADYYCYSTDSSGNH
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAAACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAAAAATATGCTTATTGGTACCAGCAGAAGTCAGGCCAGGCCCCTGTGCTGGTCATCTATGAGGACAGCAAACGACCCTCCGGGATCCCTGAGAGATTCTCTGGCTCCAGCTCAGGGACAATGGCCACCTTGACTATCAGTGGGGCCCAGGTGGAGGATGAAGCTGACTACTACTGTTACTCAACAGACAGCAGTGGTAATCAT
|
SYELTQPPSVSVSPGQTARITCSGDALPKKYAYWYQQKSGQAPVLVIYEDSKRPSGIPERFSGSSSGTMATLTISGAQVEDEADYYCYSTDSSGNH
| null | null | null | null |
TGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
TGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAAACGGCCAGGATCACCTGCTCTGGAGAT
|
SYELTQPPSVSVSPGQTARITCSGD
|
GCATTGCCAAAAAAATAT
|
ALPKKY
|
GCTTATTGGTACCAGCAGAAGTCAGGCCAGGCCCCTGTGCTGGTCATCTAT
|
AYWYQQKSGQAPVLVIY
|
GAGGACAGC
|
EDS
|
AAACGACCCTCCGGGATCCCTGAGAGATTCTCTGGCTCCAGCTCAGGGACAATGGCCACCTTGACTATCAGTGGGGCCCAGGTGGAGGATGAAGCTGACTACTACTGT
|
KRPSGIPERFSGSSSGTMATLTISGAQVEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
TACTCAACAGACAGCAGTGGTAATCATTGGGTG
|
YSTDSSGNHWV
|
TGTTACTCAACAGACAGCAGTGGTAATCATTGGGTGTTC
|
39.0
|
CYSTDSSGNHWVF
|
13.0
|
450.572
| null |
71.827
|
92S288M248S2N
| null |
380S1N37M211S
|
1.695e-128
| null |
1.463e-16
|
100.0
| null |
100.0
|
93
|
380
|
1
|
288
| null | null | null | null |
381
|
417
|
2
|
38
|
93
|
167
|
168
|
185
|
186
|
236
|
237
|
245
|
246
|
353
|
387.0
|
416.0
|
354.0
|
386.0
| null |
0
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'E', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'R', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'D'}, 'cdrl1': {'27 ': 'A', '28 ': 'L', '29 ': 'P', '36 ': 'K', '37 ': 'K', '38 ': 'Y'}, 'fwl2': {'39 ': 'A', '40 ': 'Y', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'S', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'E', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'S', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'M', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'A', '95 ': 'Q', '96 ': 'V', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Y', '106 ': 'S', '107 ': 'T', '108 ': 'D', '109 ': 'S', '110 ': 'S', '113 ': 'G', '114 ': 'N', '115 ': 'H', '116 ': 'W', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGAGCTAACAA-1_contig_2
|
AGCTCTGAGAGAGGAGCCCAGCCCTGGGATTTTCAGGTGTTTTCATTTGGTGATCAGGACTGAACAGAGAGAACTCACCATGGAGTTTGGGCTGAGCTGGCTTTTTCTTGTGGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGATCAGAGGTTACTAGAGCAGTGGCTGGCGTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-23*01
|
IGHD6-19*01
|
IGHJ4*02
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGATCAGAGGTTACTAGAGCAGTGGCTGGCGTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGANNNNNNNNNNNNNNAGCAGTGGCTGGNNTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDQRLLEQWLAYFDYWGQGTLVTVSS
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKXXXXXXQWLXYFDYWGQGTLVTVSS
|
1
|
296
|
311.0
|
322.0
|
325
|
370
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
AGCAGTGGCTGG
|
QWL
|
AGCAGTGGCTGG
|
QWL
|
TACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YFDYWGQGTLVTVSS
|
TACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YFDYWGQGTLVTVSS
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLLESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTTAGCAGCTATGCC
|
GFTFSSYA
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCT
|
MSWVRQAPGKGLEWVSA
|
ATTAGTGGTAGTGGTGGTAGCACA
|
ISGSGGST
|
TACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAAAGATCAGAGGTTACTAGAGCAGTGGCTGGCGTACTTTGACTAC
|
AKDQRLLEQWLAYFDY
|
TGTGCGAAAGATCAGAGGTTACTAGAGCAGTGGCTGGCGTACTTTGACTACTGG
|
54.0
|
CAKDQRLLEQWLAYFDYW
|
18.0
|
463.037
|
23.76
|
89.131
|
136S296M145S
|
446S6N12M119S3N
|
460S2N46M71S
|
2.742e-132
|
0.01821
|
8.291999999999999e-22
|
100.0
|
100.0
|
100.0
|
137
|
432
|
1
|
296
|
447.0
|
458.0
|
7.0
|
18.0
|
461
|
506
|
3
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
473.0
|
505.0
|
425.0
|
472.0
|
TCAGAGGTTACTAG
|
14
|
CG
|
2.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'L', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'A'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'G', '59 ': 'S', '62 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'D', '108 ': 'Q', '109 ': 'R', '110 ': 'L', '111 ': 'L', '111A': 'E', '112B': 'Q', '112A': 'W', '112 ': 'L', '113 ': 'A', '114 ': 'Y', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGAGCTAACAA-1_contig_1
|
GGGGGGAGTCAGTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGGCTCCGAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCTGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-39*01
| null |
IGKJ2*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCTGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCTGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTLYTFGQGTKLEIK
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTLYTFGQGTKLEIK
|
1
|
283
| null | null |
284
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYST
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYST
| null | null | null | null |
TGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
TGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGT
|
DIQMTQSPSSLSASVGDRVTITCRAS
|
CAGAGCATTAGCAGCTAT
|
QSISSY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LNWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTTGGCCAGGGGACCAAGCTGGAGATCAAA
|
FGQGTKLEIK
|
CAACAGAGTTACAGTACCCTGTACACT
|
QQSYSTLYT
|
TGTCAACAGAGTTACAGTACCCTGTACACTTTT
|
33.0
|
CQQSYSTLYTF
|
11.0
|
442.782
| null |
75.672
|
96S283M175S4N
| null |
379S39M136S
|
3.307e-126
| null |
8.957e-18
|
100.0
| null |
100.0
|
97
|
379
|
1
|
283
| null | null | null | null |
380
|
418
|
1
|
39
|
97
|
174
|
175
|
192
|
193
|
243
|
244
|
252
|
253
|
360
|
388.0
|
417.0
|
361.0
|
387.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'S', '108 ': 'Y', '109 ': 'S', '114 ': 'T', '115 ': 'L', '116 ': 'Y', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGAGCTGCCCA-1_contig_2
|
AGCTCTGAGAGAGGAGCCCAGCCCTGGGATTTTCAGGTGTTTTCATTTGGTGATCAGGACTGAACAGAGAGAACTCACCATGGAGTTTGGGCTGAGCTGGCTTTTTCTTGTGGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGATAACGACTACAGCTATGGTTTCCCGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-23*01
|
IGHD5-18*01
|
IGHJ4*02
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGATAACGACTACAGCTATGGTTTCCCGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGANNNNNNNTACAGCTATGGTTNNNNNGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDNDYSYGFPDYWGQGTLVTVSS
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKXXXYSYGXXDYWGQGTLVTVSS
|
1
|
296
|
304.0
|
316.0
|
322
|
361
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
TACAGCTATGGTT
|
YSYG
|
TACAGCTATGGTT
|
YSYG
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLLESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTTAGCAGCTATGCC
|
GFTFSSYA
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCT
|
MSWVRQAPGKGLEWVSA
|
ATTAGTGGTAGTGGTGGTAGCACA
|
ISGSGGST
|
TACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAAAGATAACGACTACAGCTATGGTTTCCCGGACTAC
|
AKDNDYSYGFPDY
|
TGTGCGAAAGATAACGACTACAGCTATGGTTTCCCGGACTACTGG
|
45.0
|
CAKDNDYSYGFPDYW
|
15.0
|
463.037
|
25.682
|
77.595
|
136S296M136S
|
439S5N13M116S2N
|
457S8N40M71S
|
2.7120000000000002e-132
|
0.004726
|
2.423e-18
|
100.0
|
100.0
|
100.0
|
137
|
432
|
1
|
296
|
440.0
|
452.0
|
6.0
|
18.0
|
458
|
497
|
9
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
464.0
|
496.0
|
425.0
|
463.0
|
TAACGAC
|
7
|
TCCCG
|
5.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'L', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'A'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'G', '59 ': 'S', '62 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'D', '108 ': 'N', '109 ': 'D', '110 ': 'Y', '111 ': 'S', '112 ': 'Y', '113 ': 'G', '114 ': 'F', '115 ': 'P', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGAGCTGCCCA-1_contig_1
|
AGGAATCAGACCCAGTCAGGACACAGCATGGACATGAGGGTCCTCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGTTTCCCAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCACTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGAGAAAGCCCCTAAGTCCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTACCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1D-16*01
| null |
IGKJ1*01
|
GACATCCAGATGACCCAGTCTCCATCCTCACTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGAGAAAGCCCCTAAGTCCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTACCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCACTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGAGAAAGCCCCTAAGTCCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTACCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCRASQGISSWLAWYQQKPEKAPKSLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYNSYPWTFGQGTKVEIK
|
DIQMTQSPSSLSASVGDRVTITCRASQGISSWLAWYQQKPEKAPKSLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYNSYPWTFGQGTKVEIK
|
1
|
284
| null | null |
285
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCACTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGAGAAAGCCCCTAAGTCCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTACCC
|
DIQMTQSPSSLSASVGDRVTITCRASQGISSWLAWYQQKPEKAPKSLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYNSYP
|
GACATCCAGATGACCCAGTCTCCATCCTCACTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGAGAAAGCCCCTAAGTCCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTACCC
|
DIQMTQSPSSLSASVGDRVTITCRASQGISSWLAWYQQKPEKAPKSLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYNSYP
| null | null | null | null |
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCACTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGT
|
DIQMTQSPSSLSASVGDRVTITCRAS
|
CAGGGTATTAGCAGCTGG
|
QGISSW
|
TTAGCCTGGTATCAGCAGAAACCAGAGAAAGCCCCTAAGTCCCTGATCTAT
|
LAWYQQKPEKAPKSLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGC
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAACAGTATAATAGTTACCCGTGGACG
|
QQYNSYPWT
|
TGCCAACAGTATAATAGTTACCCGTGGACGTTC
|
33.0
|
CQQYNSYPWTF
|
11.0
|
444.34
| null |
73.749
|
93S284M174S3N
| null |
377S38M136S
|
1.117e-126
| null |
3.377e-17
|
100.0
| null |
100.0
|
94
|
377
|
1
|
284
| null | null | null | null |
378
|
415
|
1
|
38
|
94
|
171
|
172
|
189
|
190
|
240
|
241
|
249
|
250
|
357
|
385.0
|
414.0
|
358.0
|
384.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'G', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'W'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'E', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'S', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'N', '109 ': 'S', '114 ': 'Y', '115 ': 'P', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGAGGGATCTG-1_contig_2
|
AGCTCTGGGAGAGGAGCCCCAGCCGTGAGATTCCCAGGAGTTTCCACTTGGTGATCAGCACTGAACACAGACCACCAACCATGGAGTTTGGGCTTAGCTGGGTTTTCCTTGTTGCTATTTTAAAAGGTGTCCAATGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCAGGGCGGTCCCTGAGACTCTCCTGTACAGCTTCTGGATTCACCTTTGGTGATTATGCTATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTAGGTTTCATTAGAAGCAAAGCTTATGGTGGGACAACAGAATACGCCGCGTCTGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCCAAAAGCATCGCCTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACTAGAGGGTTGGTAGGGTGGTATTACTATGATAGTAGCGATGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-49*04
|
IGHD3-22*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCAGGGCGGTCCCTGAGACTCTCCTGTACAGCTTCTGGATTCACCTTTGGTGATTATGCTATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTAGGTTTCATTAGAAGCAAAGCTTATGGTGGGACAACAGAATACGCCGCGTCTGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCCAAAAGCATCGCCTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACTAGAGGGTTGGTAGGGTGGTATTACTATGATAGTAGCGATGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCAGGGCGGTCCCTGAGACTCTCCTGTACAGCTTCTGGATTCACCTTTGGTGATTATGCTATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTAGGTTTCATTAGAAGCAAAGCTTATGGTGGGACAACAGAATACGCCGCGTCTGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCCAAAAGCATCGCCTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACTAGAGNNNNNNNNNNNNNGTATTACTATGATAGTAGNNNTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVQPGRSLRLSCTASGFTFGDYAMSWVRQAPGKGLEWVGFIRSKAYGGTTEYAASVKGRFTISRDDSKSIAYLQMNSLKTEDTAVYYCTRGLVGWYYYDSSDDYWGQGTLVTVSS
|
EVQLVESGGGLVQPGRSLRLSCTASGFTFGDYAMSWVRQAPGKGLEWVGFIRSKAYGGTTEYAASVKGRFTISRDDSKSIAYLQMNSLKTEDTAVYYCTRXXXXXYYYDSXXDYWGQGTLVTVSS
|
1
|
301
|
315.0
|
332.0
|
336
|
376
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCAGGGCGGTCCCTGAGACTCTCCTGTACAGCTTCTGGATTCACCTTTGGTGATTATGCTATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTAGGTTTCATTAGAAGCAAAGCTTATGGTGGGACAACAGAATACGCCGCGTCTGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCCAAAAGCATCGCCTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACTAGAG
|
EVQLVESGGGLVQPGRSLRLSCTASGFTFGDYAMSWVRQAPGKGLEWVGFIRSKAYGGTTEYAASVKGRFTISRDDSKSIAYLQMNSLKTEDTAVYYCTR
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCAGGGCGGTCCCTGAGACTCTCCTGTACAGCTTCTGGATTCACCTTTGGTGATTATGCTATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTAGGTTTCATTAGAAGCAAAGCTTATGGTGGGACAACAGAATACGCCGCGTCTGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCCAAAAGCATCGCCTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACTAGAG
|
EVQLVESGGGLVQPGRSLRLSCTASGFTFGDYAMSWVRQAPGKGLEWVGFIRSKAYGGTTEYAASVKGRFTISRDDSKSIAYLQMNSLKTEDTAVYYCTR
|
GTATTACTATGATAGTAG
|
YYYDS
|
GTATTACTATGATAGTAG
|
YYYDS
|
TGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
TGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCAGGGCGGTCCCTGAGACTCTCCTGTACAGCTTCT
|
EVQLVESGGGLVQPGRSLRLSCTAS
|
GGATTCACCTTTGGTGATTATGCT
|
GFTFGDYA
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTAGGTTTC
|
MSWVRQAPGKGLEWVGF
|
ATTAGAAGCAAAGCTTATGGTGGGACAACA
|
IRSKAYGGTT
|
GAATACGCCGCGTCTGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCCAAAAGCATCGCCTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGT
|
EYAASVKGRFTISRDDSKSIAYLQMNSLKTEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
ACTAGAGGGTTGGTAGGGTGGTATTACTATGATAGTAGCGATGACTAC
|
TRGLVGWYYYDSSDDY
|
TGTACTAGAGGGTTGGTAGGGTGGTATTACTATGATAGTAGCGATGACTACTGG
|
54.0
|
CTRGLVGWYYYDSSDDYW
|
18.0
|
470.828
|
35.296
|
79.518
|
137S301M146S1N
|
451S18M115S13N
|
472S7N41M71S
|
1.254e-134
|
6.206e-06
|
6.576e-19
|
100.0
|
100.0
|
100.0
|
138
|
438
|
1
|
301
|
452.0
|
469.0
|
1.0
|
18.0
|
473
|
513
|
8
|
48
|
138
|
212
|
213
|
236
|
237
|
287
|
288
|
317
|
318
|
431
|
480.0
|
512.0
|
432.0
|
479.0
|
GGTTGGTAGGGTG
|
13
|
CGA
|
3.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'T', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'G', '36 ': 'D', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'G', '55 ': 'F'}, 'cdrh2': {'56 ': 'I', '57 ': 'R', '58 ': 'S', '59 ': 'K', '60 ': 'A', '61 ': 'Y', '62 ': 'G', '63 ': 'G', '64 ': 'T', '65 ': 'T'}, 'fwh3': {'66 ': 'E', '67 ': 'Y', '68 ': 'A', '69 ': 'A', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'D', '83 ': 'S', '84 ': 'K', '85 ': 'S', '86 ': 'I', '87 ': 'A', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'K', '96 ': 'T', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'T', '106 ': 'R', '107 ': 'G', '108 ': 'L', '109 ': 'V', '110 ': 'G', '111 ': 'W', '111A': 'Y', '112B': 'Y', '112A': 'Y', '112 ': 'D', '113 ': 'S', '114 ': 'S', '115 ': 'D', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGAGGGATCTG-1_contig_1
|
GCTGGGGTCTCAGGAGGCAGCGCTCTCAGGACGTCACCACCATGGCCTGGGCTCTGCTCCTCCTCACCCTCCTCACTCAGGGCACAGGGTCCTGGGCCCAGTCTGCCCTGACTCAGCCTCCCTCCGCGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCGTCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCAGCTCATATGCAGGCAGCAACAATAGGGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV2-8*01
| null |
IGLJ2*01
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGCGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCGTCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCAGCTCATATGCAGGCAGCAACAATAGGGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGCGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCGTCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCAGCTCATATGCAGGCAGCAACAATNNNGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYAGSNNRVVFGGGTKLTVL
|
QSALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYAGSNNXVVFGGGTKLTVL
|
1
|
294
| null | null |
298
|
334
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGCGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCGTCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCAGCTCATATGCAGGCAGCAACAAT
|
QSALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYAGSNN
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGCGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCGTCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCAGCTCATATGCAGGCAGCAACAAT
|
QSALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYAGSNN
| null | null | null | null |
GTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
GTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGCGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACC
|
QSALTQPPSASGSPGQSVTISCTGT
|
AGCAGTGACGTTGGTGGTTATAACTAT
|
SSDVGGYNY
|
GTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTAT
|
VSWYQQHPGKAPKLMIY
|
GAGGTCAGT
|
EVS
|
AAGCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCGTCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGC
|
KRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
AGCTCATATGCAGGCAGCAACAATAGGGTGGTA
|
SSYAGSNNRVV
|
TGCAGCTCATATGCAGGCAGCAACAATAGGGTGGTATTC
|
39.0
|
CSSYAGSNNRVVF
|
13.0
|
459.921
| null |
71.827
|
98S294M251S3N
| null |
395S1N37M211S
|
2.6640000000000004e-131
| null |
1.498e-16
|
100.0
| null |
100.0
|
99
|
392
|
1
|
294
| null | null | null | null |
396
|
432
|
2
|
38
|
99
|
173
|
174
|
200
|
201
|
251
|
252
|
260
|
261
|
368
|
402.0
|
431.0
|
369.0
|
401.0
|
AGG
|
3
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'A', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'A', '12 ': 'S', '13 ': 'G', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'S', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'T', '25 ': 'G', '26 ': 'T'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'D', '30 ': 'V', '31 ': 'G', '35 ': 'G', '36 ': 'Y', '37 ': 'N', '38 ': 'Y'}, 'fwl2': {'39 ': 'V', '40 ': 'S', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'H', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'M', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'E', '57 ': 'V', '65 ': 'S'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'T', '91 ': 'V', '92 ': 'S', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'S', '106 ': 'S', '107 ': 'Y', '108 ': 'A', '109 ': 'G', '110 ': 'S', '113 ': 'N', '114 ': 'N', '115 ': 'R', '116 ': 'V', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGCAACTGCTA-1_contig_1
|
ATCACATAACAACCACATTCCTCCTCTAAAGAAGCCCCTGGGAGCACAGCTCATCACCATGGACTGGACCTGGAGGTTCCTCTTTGTGGTGGCAGCAGCTACAGGTGTCCAGTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGCCAGGGGGTCCCGAGGGTGGCTACGATTTGGGTAGACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-69*01
|
IGHD5-12*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGCCAGGGGGTCCCGAGGGTGGCTACGATTTGGGTAGACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGNNNNNNNNNNNNNNNNGTGGCTACGATTNNNNNNNACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCASQGVPRVATIWVDFDYWGQGTLVTVSS
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAXXXXXXVATIXXXFDYWGQGTLVTVSS
|
1
|
293
|
310.0
|
321.0
|
329
|
373
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAG
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCA
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAG
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCA
|
GTGGCTACGATT
|
VATI
|
GTGGCTACGATT
|
VATI
|
ACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
ACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGSSVKVSCKAS
|
GGAGGCACCTTCAGCAGCTATGCT
|
GGTFSSYA
|
ATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGG
|
ISWVRQAPGQGLEWMGG
|
ATCATCCCTATCTTTGGTACAGCA
|
IIPIFGTA
|
AACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGCCAGGGGGTCCCGAGGGTGGCTACGATTTGGGTAGACTTTGACTAC
|
ASQGVPRVATIWVDFDY
|
TGTGCGAGCCAGGGGGTCCCGAGGGTGGCTACGATTTGGGTAGACTTTGACTACTGG
|
57.0
|
CASQGVPRVATIWVDFDYW
|
19.0
|
458.363
|
23.76
|
87.208
|
115S293M151S3N
|
424S9N12M123S2N
|
443S3N45M71S
|
6.810000000000005e-131
|
0.01763
|
3.044e-21
|
100.0
|
100.0
|
100.0
|
116
|
408
|
1
|
293
|
425.0
|
436.0
|
10.0
|
21.0
|
444
|
488
|
4
|
48
|
116
|
190
|
191
|
214
|
215
|
265
|
266
|
289
|
290
|
403
|
455.0
|
487.0
|
404.0
|
454.0
|
CCAGGGGGTCCCGAGG
|
16
|
TGGGTAG
|
7.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'S', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'I', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'G'}, 'cdrh2': {'56 ': 'I', '57 ': 'I', '58 ': 'P', '59 ': 'I', '62 ': 'F', '63 ': 'G', '64 ': 'T', '65 ': 'A'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'T', '80 ': 'A', '81 ': 'D', '82 ': 'E', '83 ': 'S', '84 ': 'T', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'S', '107 ': 'Q', '108 ': 'G', '109 ': 'V', '110 ': 'P', '111 ': 'R', '111A': 'V', '111B': 'A', '112B': 'T', '112A': 'I', '112 ': 'W', '113 ': 'V', '114 ': 'D', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGCAACTGCTA-1_contig_2
|
GATCAGGACTCCTCAGTTCACCTTCTCACAATGAGGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCTCTGGGTCCCAGGATCCAGTGGGGATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCCCTAAAGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV2-30*01
| null |
IGKJ2*01
|
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCCCTAAAGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCNNNNNNGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
DVVMTQSPLSLPVTLGQPASISCRSSQSLVYSDGNTYLNWFQQRPGQSPRRLIYKVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGTHWPLKYTFGQGTKLEIK
|
DVVMTQSPLSLPVTLGQPASISCRSSQSLVYSDGNTYLNWFQQRPGQSPRRLIYKVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGTHWPXXYTFGQGTKLEIK
|
1
|
299
| null | null |
306
|
343
|
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCC
|
DVVMTQSPLSLPVTLGQPASISCRSSQSLVYSDGNTYLNWFQQRPGQSPRRLIYKVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGTHWP
|
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCC
|
DVVMTQSPLSLPVTLGQPASISCRSSQSLVYSDGNTYLNWFQQRPGQSPRRLIYKVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGTHWP
| null | null | null | null |
GTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
GTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGT
|
DVVMTQSPLSLPVTLGQPASISCRSS
|
CAAAGCCTCGTATACAGTGATGGAAACACCTAC
|
QSLVYSDGNTY
|
TTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTAT
|
LNWFQQRPGQSPRRLIY
|
AAGGTTTCT
|
KVS
|
AACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGC
|
NRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC
|
TTTGGCCAGGGGACCAAGCTGGAGATCAAA
|
FGQGTKLEIK
|
ATGCAAGGTACACACTGGCCCCTAAAGTACACT
|
MQGTHWPLKYT
|
TGCATGCAAGGTACACACTGGCCCCTAAAGTACACTTTT
|
39.0
|
CMQGTHWPLKYTF
|
13.0
|
467.712
| null |
73.749
|
90S299M180S3N
| null |
395S1N38M136S
|
1.064e-133
| null |
3.49e-17
|
100.0
| null |
100.0
|
91
|
389
|
1
|
299
| null | null | null | null |
396
|
433
|
2
|
39
|
91
|
168
|
169
|
201
|
202
|
252
|
253
|
261
|
262
|
369
|
403.0
|
432.0
|
370.0
|
402.0
|
CCTAAA
|
6
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'V', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'L', '10 ': 'S', '11 ': 'L', '12 ': 'P', '13 ': 'V', '14 ': 'T', '15 ': 'L', '16 ': 'G', '17 ': 'Q', '18 ': 'P', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'S', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'L', '30 ': 'V', '31 ': 'Y', '32 ': 'S', '34 ': 'D', '35 ': 'G', '36 ': 'N', '37 ': 'T', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'F', '43 ': 'Q', '44 ': 'Q', '45 ': 'R', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'S', '50 ': 'P', '51 ': 'R', '52 ': 'R', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'K', '57 ': 'V', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'D', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'K', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'V', '95 ': 'E', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'V', '100 ': 'G', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'M', '106 ': 'Q', '107 ': 'G', '108 ': 'T', '109 ': 'H', '110 ': 'W', '113 ': 'P', '114 ': 'L', '115 ': 'K', '116 ': 'Y', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGCACGCCAGT-1_contig_2
|
AGCTCTGAGAGAGGAGCCTTAGCCCTGGATTCCAAGGCCTATCCACTTGGTGATCAGCACTGAGCACCGAGGATTCACCATGGAACTGGGGCTCCGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGATAGGGTAGCAGTTTCCCCCCACCGCATGGACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-21*01
|
IGHD6-19*01
|
IGHJ6*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGATAGGGTAGCAGTTTCCCCCCACCGCATGGACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGANNNNNTAGCAGTNNNNNNNNNNNNNNNNNACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARDRVAVSPHRMDYYYGMDVWGQGTTVTVSS
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARXXXAVXXXXXXYYYGMDVWGQGTTVTVSS
|
1
|
296
|
302.0
|
308.0
|
326
|
381
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
TAGCAGT
|
AV
|
TAGCAGT
|
AV
|
ACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYGMDVWGQGTTVTVSS
|
ACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYGMDVWGQGTTVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVKPGGSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATAGC
|
GFTFSSYS
|
ATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCC
|
MNWVRQAPGKGLEWVSS
|
ATTAGTAGTAGTAGTAGTTACATA
|
ISSSSSYI
|
TACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAGAGATAGGGTAGCAGTTTCCCCCCACCGCATGGACTACTACTACGGTATGGACGTC
|
ARDRVAVSPHRMDYYYGMDV
|
TGTGCGAGAGATAGGGTAGCAGTTTCCCCCCACCGCATGGACTACTACTACGGTATGGACGTCTGG
|
66.0
|
CARDRVAVSPHRMDYYYGMDVW
|
22.0
|
463.037
|
14.146
|
108.358
|
136S296M157S
|
437S5N7M145S9N
|
461S6N56M72S
|
2.802e-132
|
14.56
|
1.3800000000000002e-27
|
100.0
|
100.0
|
100.0
|
137
|
432
|
1
|
296
|
438.0
|
444.0
|
6.0
|
12.0
|
462
|
517
|
7
|
62
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
485.0
|
517.0
|
425.0
|
484.0
|
TAGGG
|
5
|
TTCCCCCCACCGCATGG
|
17.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'S'}, 'fwh2': {'39 ': 'M', '40 ': 'N', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'S'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'S', '59 ': 'S', '62 ': 'S', '63 ': 'S', '64 ': 'Y', '65 ': 'I'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'D', '108 ': 'R', '109 ': 'V', '110 ': 'A', '111 ': 'V', '111A': 'S', '111B': 'P', '111C': 'H', '112D': 'R', '112C': 'M', '112B': 'D', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGCACGCCAGT-1_contig_1
|
GGAGGAGTCAGACCCACTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCCCAGGTGCCAGATGTGCCATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTACAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGCACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAAGATTACAATTACCCCTTTACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-6*01
| null |
IGKJ2*01
|
GCCATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTACAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGCACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAAGATTACAATTACCCCTTTACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
GCCATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTACAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGCACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAAGATTACAATTACCCNNNNACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
AIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQDYNYPFTFGQGTKLEIK
|
AIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQDYNYPXTFGQGTKLEIK
|
1
|
284
| null | null |
289
|
322
|
GCCATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTACAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGCACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAAGATTACAATTACCC
|
AIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQDYNYP
|
GCCATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTACAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGCACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAAGATTACAATTACCC
|
AIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQDYNYP
| null | null | null | null |
ACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
TFGQGTKLEIK
|
ACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
TFGQGTKLEIK
|
GCCATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGT
|
AIQMTQSPSSLSASVGDRVTITCRAS
|
CAGGGCATTAGAAATGAT
|
QGIRND
|
TTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LGWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTACAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGCACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTTGGCCAGGGGACCAAGCTGGAGATCAAA
|
FGQGTKLEIK
|
CTACAAGATTACAATTACCCCTTTACT
|
LQDYNYPFT
|
TGTCTACAAGATTACAATTACCCCTTTACTTTT
|
33.0
|
CLQDYNYPFTF
|
11.0
|
444.34
| null |
66.059
|
95S284M174S3N
| null |
383S5N34M136S
|
1.121e-126
| null |
7.003e-15
|
100.0
| null |
100.0
|
96
|
379
|
1
|
284
| null | null | null | null |
384
|
417
|
6
|
39
|
96
|
173
|
174
|
191
|
192
|
242
|
243
|
251
|
252
|
359
|
387.0
|
416.0
|
360.0
|
386.0
|
CTTT
|
4
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'A', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'G', '29 ': 'I', '36 ': 'R', '37 ': 'N', '38 ': 'D'}, 'fwk2': {'39 ': 'L', '40 ': 'G', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'L', '106 ': 'Q', '107 ': 'D', '108 ': 'Y', '109 ': 'N', '114 ': 'Y', '115 ': 'P', '116 ': 'F', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGCAGCCAGAA-1_contig_2
|
ATCATCCAACAACCACATCCCTTCTCTACAGAAGCCTCTGAGAGGAAAGTTCTTCACCATGGACTGGACCTGGAGGGTCTTCTGCTTGCTGGCTGTAGCTCCAGGTGCTCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCTGGATACACCTTCACCAGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAACCCTAGTGGTGGTAGCACAAGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGACACCGATGACCAGCTGCTACGGGCTGCTATGGTGCCGAGGGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-46*01
|
IGHD2-2*01
|
IGHJ6*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCTGGATACACCTTCACCAGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAACCCTAGTGGTGGTAGCACAAGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGACACCGATGACCAGCTGCTACGGGCTGCTATGGTGCCGAGGGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCTGGATACACCTTCACCAGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAACCCTAGTGGTGGTAGCACAAGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGANNNNNNNNACCAGCTGCTANNNNNNNNNNNNNNNNNNNNNGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDTDDQLLRAAMVPRGMDVWGQGTTVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARXXXXQLLXXXXXXXGMDVWGQGTTVTVSS
|
1
|
296
|
305.0
|
315.0
|
337
|
381
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCTGGATACACCTTCACCAGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAACCCTAGTGGTGGTAGCACAAGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCTGGATACACCTTCACCAGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAACCCTAGTGGTGGTAGCACAAGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCAR
|
ACCAGCTGCTA
|
QLL
|
ACCAGCTGCTA
|
QLL
|
GGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
GMDVWGQGTTVTVSS
|
GGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
GMDVWGQGTTVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCAGCTACTAT
|
GYTFTSYY
|
ATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATA
|
MHWVRQAPGQGLEWMGI
|
ATCAACCCTAGTGGTGGTAGCACA
|
INPSGGST
|
AGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
SYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAGAGACACCGATGACCAGCTGCTACGGGCTGCTATGGTGCCGAGGGGTATGGACGTC
|
ARDTDDQLLRAAMVPRGMDV
|
TGTGCGAGAGACACCGATGACCAGCTGCTACGGGCTGCTATGGTGCCGAGGGGTATGGACGTCTGG
|
66.0
|
CARDTDDQLLRAAMVPRGMDVW
|
22.0
|
463.037
|
21.837
|
87.208
|
115S296M157S
|
419S16N11M138S4N
|
451S17N45M72S
|
2.7120000000000002e-132
|
0.06793
|
3.0940000000000002e-21
|
100.0
|
100.0
|
100.0
|
116
|
411
|
1
|
296
|
420.0
|
430.0
|
17.0
|
27.0
|
452
|
496
|
18
|
62
|
116
|
190
|
191
|
214
|
215
|
265
|
266
|
289
|
290
|
403
|
464.0
|
496.0
|
404.0
|
463.0
|
CACCGATG
|
8
|
CGGGCTGCTATGGTGCCGAGG
|
21.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'S', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'I'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'P', '59 ': 'S', '62 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'S', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'T', '85 ': 'S', '86 ': 'T', '87 ': 'V', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'D', '108 ': 'T', '109 ': 'D', '110 ': 'D', '111 ': 'Q', '111A': 'L', '111B': 'L', '111C': 'R', '112D': 'A', '112C': 'A', '112B': 'M', '112A': 'V', '112 ': 'P', '113 ': 'R', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGCAGCCAGAA-1_contig_1
|
GGGAGAGCCCTGGGGAGGAACTGCTCAGTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACCGGAGAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTTCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-11*01
| null |
IGKJ4*01
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTTCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTNNGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPSLTFGGGTKVEIK
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPXLTFGGGTKVEIK
|
1
|
285
| null | null |
288
|
325
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCT
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWP
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCT
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWP
| null | null | null | null |
GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVLTQSPATLSLSPGERATLSCRAS
|
CAGAGTGTTAGCAGCTAC
|
QSVSSY
|
TTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GATGCATCC
|
DAS
|
AACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGT
|
NRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAGCAGCGTAGCAACTGGCCTTCGCTCACT
|
QQRSNWPSLT
|
TGTCAGCAGCGTAGCAACTGGCCTTCGCTCACTTTC
|
36.0
|
CQQRSNWPSLTF
|
12.0
|
445.898
| null |
73.749
|
107S285M176S2N
| null |
394S38M136S
|
3.915e-127
| null |
3.483e-17
|
100.0
| null |
100.0
|
108
|
392
|
1
|
285
| null | null | null | null |
395
|
432
|
1
|
38
|
108
|
185
|
186
|
203
|
204
|
254
|
255
|
263
|
264
|
371
|
402.0
|
431.0
|
372.0
|
401.0
|
TC
|
2
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'A', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'L', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'A', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'E', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'R', '108 ': 'S', '109 ': 'N', '113 ': 'W', '114 ': 'P', '115 ': 'S', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGCAGGCGATA-1_contig_2
|
CGAGCCCAGCACTGGAAGTCGCCGGTGTTTCCATTCGGTGATCATCACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTCCTCGTTGCTCTTTTAAGAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGCCATAGTGGGAGCTACTCTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-30-3*01
|
IGHD1-26*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGCCATAGTGGGAGCTACTCTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGNNATAGTGGGAGCTACTNTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARAIVGATLDYWGQGTLVTVSS
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARXIVGATXDYWGQGTLVTVSS
|
1
|
295
|
298.0
|
312.0
|
314
|
355
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
ATAGTGGGAGCTACT
|
IVGAT
|
ATAGTGGGAGCTACT
|
IVGAT
|
TTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
TTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
QVQLVESGGGVVQPGRSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATGCT
|
GFTFSSYA
|
ATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTT
|
MHWVRQAPGKGLEWVAV
|
ATATCATATGATGGAAGCAATAAA
|
ISYDGSNK
|
TACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGCCATAGTGGGAGCTACTCTTGACTAC
|
ARAIVGATLDY
|
TGTGCGAGAGCCATAGTGGGAGCTACTCTTGACTACTGG
|
39.0
|
CARAIVGATLDYW
|
13.0
|
461.479
|
29.528
|
81.44
|
124S295M131S1N
|
421S3N15M114S2N
|
437S6N42M71S
|
7.721e-132
|
0.0003182
|
1.631e-19
|
100.0
|
100.0
|
100.0
|
125
|
419
|
1
|
295
|
422.0
|
436.0
|
4.0
|
18.0
|
438
|
479
|
7
|
48
|
125
|
199
|
200
|
223
|
224
|
274
|
275
|
298
|
299
|
412
|
446.0
|
478.0
|
413.0
|
445.0
|
CC
|
2
|
C
|
1.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'V', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'Y', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'N', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'A', '108 ': 'I', '109 ': 'V', '110 ': 'G', '113 ': 'A', '114 ': 'T', '115 ': 'L', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGCAGGCGATA-1_contig_1
|
GGGGAGGAACTGCTCAGTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACTGGAGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-15*01
| null |
IGKJ1*01
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPPWTFGQGTKVEIK
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPPWTFGQGTKVEIK
|
1
|
287
| null | null |
288
|
325
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCC
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPP
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCC
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPP
| null | null | null | null |
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVMTQSPATLSVSPGERATLSCRAS
|
CAGAGTGTTAGCAGCAAC
|
QSVSSN
|
TTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GGTGCATCC
|
GAS
|
ACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGT
|
TRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAGCAGTATAATAACTGGCCTCCGTGGACG
|
QQYNNWPPWT
|
TGTCAGCAGTATAATAACTGGCCTCCGTGGACGTTC
|
36.0
|
CQQYNNWPPWTF
|
12.0
|
449.014
| null |
73.749
|
96S287M174S
| null |
383S38M136S
|
4.4230000000000005e-128
| null |
3.415e-17
|
100.0
| null |
100.0
|
97
|
383
|
1
|
287
| null | null | null | null |
384
|
421
|
1
|
38
|
97
|
174
|
175
|
192
|
193
|
243
|
244
|
252
|
253
|
360
|
391.0
|
420.0
|
361.0
|
390.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'A', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '36 ': 'S', '37 ': 'S', '38 ': 'N'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'G', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'A', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'N', '109 ': 'N', '113 ': 'W', '114 ': 'P', '115 ': 'P', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGCAGTGGAGT-1_contig_2
|
ATCACATAACAACCAGATTCCTCCTCTAAAGAAGCCCCTGGGAGCACAGCTCATCACCATGGACTGGACCTGGAGGTTCCTCTTTGTGGTGGCAGCAGCTACAGGTGTCCAGTCCCAGGTCCAGCTGGTGCAATCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATACTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGGGATATTGTAGTAGTACCAGCTGCTTGGAATACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-69*02
|
IGHD2-2*01
|
IGHJ6*02
|
CAGGTCCAGCTGGTGCAATCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATACTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGGGATATTGTAGTAGTACCAGCTGCTTGGAATACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTCCAGCTGGTGCAATCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATACTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGATATTGTAGTAGTACCAGCTGCTNNNNNTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYTISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYCAGYCSSTSCLEYYYYGMDVWGQGTTVTVSS
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYTISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYCARYCSSTSCXXYYYYGMDVWGQGTTVTVSS
|
1
|
294
|
295.0
|
316.0
|
322
|
378
|
CAGGTCCAGCTGGTGCAATCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATACTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGGGA
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYTISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYCAG
|
CAGGTCCAGCTGGTGCAATCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATACTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGA
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYTISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYCAR
|
TATTGTAGTAGTACCAGCTGCT
|
YCSSTSC
|
TATTGTAGTAGTACCAGCTGCT
|
YCSSTSC
|
TACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
TACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
CAGGTCCAGCTGGTGCAATCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGSSVKVSCKAS
|
GGAGGCACCTTCAGCAGCTATACT
|
GGTFSSYT
|
ATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGG
|
ISWVRQAPGQGLEWMGR
|
ATCATCCCTATCCTTGGTATAGCA
|
IIPILGIA
|
AACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGGGATATTGTAGTAGTACCAGCTGCTTGGAATACTACTACTACGGTATGGACGTC
|
AGYCSSTSCLEYYYYGMDV
|
TGTGCGGGATATTGTAGTAGTACCAGCTGCTTGGAATACTACTACTACGGTATGGACGTCTGG
|
63.0
|
CAGYCSSTSCLEYYYYGMDVW
|
21.0
|
456.805
|
42.986
|
110.281
|
115S294M156S
|
409S4N22M134S5N
|
436S5N57M72S
|
2.028e-130
|
2.904e-08
|
3.4890000000000003e-28
|
99.66
|
100.0
|
100.0
|
116
|
409
|
1
|
294
|
410.0
|
431.0
|
5.0
|
26.0
|
437
|
493
|
6
|
62
|
116
|
190
|
191
|
214
|
215
|
265
|
266
|
289
|
290
|
403
|
461.0
|
493.0
|
404.0
|
460.0
| null |
0
|
TGGAA
|
5.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'S', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'T'}, 'fwh2': {'39 ': 'I', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'I', '58 ': 'P', '59 ': 'I', '62 ': 'L', '63 ': 'G', '64 ': 'I', '65 ': 'A'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'T', '80 ': 'A', '81 ': 'D', '82 ': 'K', '83 ': 'S', '84 ': 'T', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'G', '107 ': 'Y', '108 ': 'C', '109 ': 'S', '110 ': 'S', '111 ': 'T', '111A': 'S', '111B': 'C', '111C': 'L', '112C': 'E', '112B': 'Y', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGCAGTGGAGT-1_contig_1
|
GGGGAGGAACTGCTCAGTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACCGGAGAAATTGTGTTGACGCAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCGGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCTGGCGCCCAGGCTCCTCATCTATGATGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCTACGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3D-20*01
| null |
IGKJ1*01
|
GAAATTGTGTTGACGCAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCGGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCTGGCGCCCAGGCTCCTCATCTATGATGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCTACGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GAAATTGTGTTGACGCAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCGGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCTGGCGCCCAGGCTCCTCATCTATGATGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCNNNGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
EIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAPRLLIYDASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSTWTFGQGTKVEIK
|
EIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAPRLLIYDASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSXWTFGQGTKVEIK
|
1
|
284
| null | null |
288
|
325
|
GAAATTGTGTTGACGCAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCGGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCTGGCGCCCAGGCTCCTCATCTATGATGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTC
|
EIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAPRLLIYDASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSS
|
GAAATTGTGTTGACGCAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCGGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCTGGCGCCCAGGCTCCTCATCTATGATGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTC
|
EIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAPRLLIYDASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSS
| null | null | null | null |
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GAAATTGTGTTGACGCAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCGGGGCCAGT
|
EIVLTQSPATLSLSPGERATLSCGAS
|
CAGAGTGTTAGCAGCAGCTAC
|
QSVSSSY
|
TTAGCCTGGTACCAGCAGAAACCTGGCCTGGCGCCCAGGCTCCTCATCTAT
|
LAWYQQKPGLAPRLLIY
|
GATGCATCC
|
DAS
|
AGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGT
|
SRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAGCAGTATGGTAGCTCTACGTGGACG
|
QQYGSSTWT
|
TGTCAGCAGTATGGTAGCTCTACGTGGACGTTC
|
33.0
|
CQQYGSSTWTF
|
11.0
|
444.34
| null |
73.749
|
96S284M177S6N
| null |
383S38M136S
|
1.129e-126
| null |
3.415e-17
|
100.0
| null |
100.0
|
97
|
380
|
1
|
284
| null | null | null | null |
384
|
421
|
1
|
38
|
97
|
174
|
175
|
195
|
196
|
246
|
247
|
255
|
256
|
363
|
391.0
|
420.0
|
364.0
|
390.0
|
TAC
|
3
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'A', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'L', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'G', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '30 ': 'S', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'L', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'L', '95 ': 'E', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'G', '109 ': 'S', '114 ': 'S', '115 ': 'T', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGGTAACGCGA-1_contig_1
|
GTCTTATCTGGGGACTCAACAACCACATCTGTCCTCTAGAGAAAACCCTGTGAGCACAGCTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCTACAAGTGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGCGAATTACTATGATAGTAGTGGTTATTACTTCGTCCGCTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-8*01
|
IGHD3-22*01
|
IGHJ5*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGCGAATTACTATGATAGTAGTGGTTATTACTTCGTCCGCTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGNNNATTACTATGATAGTAGTGGTTATTACTNNNNNNNCTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARANYYDSSGYYFVRWFDPWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARXXYYDSSGYYXXXWFDPWGQGTLVTVSS
|
1
|
295
|
299.0
|
325.0
|
333
|
379
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCAR
|
ATTACTATGATAGTAGTGGTTATTACT
|
YYDSSGYY
|
ATTACTATGATAGTAGTGGTTATTACT
|
YYDSSGYY
|
CTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WFDPWGQGTLVTVSS
|
CTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WFDPWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCAGTTATGAT
|
GYTFTSYD
|
ATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGG
|
INWVRQATGQGLEWMGW
|
ATGAACCCTAACAGTGGTAACACA
|
MNPNSGNT
|
GGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
GYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGCGAATTACTATGATAGTAGTGGTTATTACTTCGTCCGCTGGTTCGACCCC
|
ARANYYDSSGYYFVRWFDP
|
TGTGCGAGAGCGAATTACTATGATAGTAGTGGTTATTACTTCGTCCGCTGGTTCGACCCCTGG
|
63.0
|
CARANYYDSSGYYFVRWFDPW
|
21.0
|
461.479
|
52.6
|
91.054
|
125S295M155S1N
|
423S2N27M125S2N
|
457S4N47M71S
|
8.045000000000001e-132
|
3.774e-11
|
2.1789999999999997e-22
|
100.0
|
100.0
|
100.0
|
126
|
420
|
1
|
295
|
424.0
|
450.0
|
3.0
|
29.0
|
458
|
504
|
5
|
51
|
126
|
200
|
201
|
224
|
225
|
275
|
276
|
299
|
300
|
413
|
471.0
|
503.0
|
414.0
|
470.0
|
CGA
|
3
|
TCGTCCG
|
7.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'S', '37 ': 'Y', '38 ': 'D'}, 'fwh2': {'39 ': 'I', '40 ': 'N', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'T', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'M', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'N', '65 ': 'T'}, 'fwh3': {'66 ': 'G', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'N', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'A', '108 ': 'N', '109 ': 'Y', '110 ': 'Y', '111 ': 'D', '111A': 'S', '111B': 'S', '111C': 'G', '112C': 'Y', '112B': 'Y', '112A': 'F', '112 ': 'V', '113 ': 'R', '114 ': 'W', '115 ': 'F', '116 ': 'D', '117 ': 'P'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGGTAACGCGA-1_contig_2
|
CTGGGCCTCAGGAAGCAGCATCGGAGGTGCCTCAGCCATGGCATGGATCCCTCTCTTCCTCGGCGTCCTTGCTTACTGCACAGGATCCGTGGCCTCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-1*01
| null |
IGLJ2*01
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTVVFGGGTKLTVL
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTVVFGGGTKLTVL
|
1
|
283
| null | null |
284
|
319
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTG
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSST
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTG
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSST
| null | null | null | null |
TGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
TGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGAT
|
SYELTQPPSVSVSPGQTASITCSGD
|
AAATTGGGGGATAAATAT
|
KLGDKY
|
GCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTAT
|
ACWYQQKPGQSPVLVIY
|
CAAGATAGC
|
QDS
|
AAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGT
|
KRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGGCGTGGGACAGCAGCACTGTGGTA
|
QAWDSSTVV
|
TGTCAGGCGTGGGACAGCAGCACTGTGGTATTC
|
33.0
|
CQAWDSSTVVF
|
11.0
|
442.782
| null |
69.904
|
94S283M247S2N
| null |
377S2N36M211S
|
3.727e-126
| null |
5.51e-16
|
100.0
| null |
100.0
|
95
|
377
|
1
|
283
| null | null | null | null |
378
|
413
|
3
|
38
|
95
|
169
|
170
|
187
|
188
|
238
|
239
|
247
|
248
|
355
|
383.0
|
412.0
|
356.0
|
382.0
| null |
0
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'E', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'D'}, 'cdrl1': {'27 ': 'K', '28 ': 'L', '29 ': 'G', '36 ': 'D', '37 ': 'K', '38 ': 'Y'}, 'fwl2': {'39 ': 'A', '40 ': 'C', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'S', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'Q', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'N', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'T', '95 ': 'Q', '96 ': 'A', '97 ': 'M', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'A', '107 ': 'W', '108 ': 'D', '109 ': 'S', '114 ': 'S', '115 ': 'T', '116 ': 'V', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGGTACCGTTA-1_contig_2
|
GGGAGAGGAGCCCAGCACTGGGATTCCGAGGTGTTTCCATTCGGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTTTGGCTGAGCTGGGTTTTCCTTGTTGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAACCGACAGCCTACGATTTTTGGAGTGGTTTGTCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-53*01
|
IGHD3-3*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAACCGACAGCCTACGATTTTTGGAGTGGTTTGTCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGANNNNNNNNNNTACGATTTTTGGAGTGGTTNNNCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARTDSLRFLEWFVFDYWGQGTLVTVSS
|
EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARXXXXRFLEWXXFDYWGQGTLVTVSS
|
1
|
291
|
302.0
|
320.0
|
324
|
367
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGA
|
EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGA
|
EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
TACGATTTTTGGAGTGGTT
|
RFLEW
|
TACGATTTTTGGAGTGGTT
|
RFLEW
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLIQPGGSLRLSCAAS
|
GGGTTCACCGTCAGTAGCAACTAC
|
GFTVSSNY
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTT
|
MSWVRQAPGKGLEWVSV
|
ATTTATAGCGGTGGTAGCACA
|
IYSGGST
|
TACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAACCGACAGCCTACGATTTTTGGAGTGGTTTGTCTTTGACTAC
|
ARTDSLRFLEWFVFDY
|
TGTGCGAGAACCGACAGCCTACGATTTTTGGAGTGGTTTGTCTTTGACTACTGG
|
54.0
|
CARTDSLRFLEWFVFDYW
|
18.0
|
455.247
|
37.218
|
85.286
|
130S291M147S2N
|
431S4N19M118S8N
|
453S4N44M71S
|
6.006e-130
|
1.591e-06
|
1.173e-20
|
100.0
|
100.0
|
100.0
|
131
|
421
|
1
|
291
|
432.0
|
450.0
|
5.0
|
23.0
|
454
|
497
|
5
|
48
|
131
|
205
|
206
|
229
|
230
|
280
|
281
|
301
|
302
|
415
|
464.0
|
496.0
|
416.0
|
463.0
|
ACCGACAGCC
|
10
|
TGT
|
3.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'I', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'V', '35 ': 'S', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'S', '59 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'T', '108 ': 'D', '109 ': 'S', '110 ': 'L', '111 ': 'R', '111A': 'F', '112B': 'L', '112A': 'E', '112 ': 'W', '113 ': 'F', '114 ': 'V', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGGTACCGTTA-1_contig_1
|
GGGGAGGAGTCAGTCCCAACCAGGACACAGCATGGACATGAGGGTCCCTGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCTCAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-33*01
| null |
IGKJ4*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPLTFGGGTKVEIK
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPLTFGGGTKVEIK
|
1
|
286
| null | null |
287
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLP
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLP
| null | null | null | null |
TCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
TFGGGTKVEIK
|
TCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
TFGGGTKVEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGT
|
DIQMTQSPSSLSASVGDRVTITCQAS
|
CAGGACATTAGCAACTAT
|
QDISNY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAC
|
LNWYQQKPGKAPKLLIY
|
GATGCATCC
|
DAS
|
AATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGT
|
NLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAACAGTATGATAATCTCCCTCTCACT
|
QQYDNLPLT
|
TGTCAACAGTATGATAATCTCCCTCTCACTTTC
|
33.0
|
CQQYDNLPLTF
|
11.0
|
447.456
| null |
69.904
|
97S286M172S1N
| null |
383S2N36M136S
|
1.2979999999999998e-127
| null |
4.89e-16
|
100.0
| null |
100.0
|
98
|
383
|
1
|
286
| null | null | null | null |
384
|
419
|
3
|
38
|
98
|
175
|
176
|
193
|
194
|
244
|
245
|
253
|
254
|
361
|
389.0
|
418.0
|
362.0
|
388.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'Q', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'D', '29 ': 'I', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'L', '68 ': 'E', '69 ': 'T', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'F', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'I', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'D', '109 ': 'N', '114 ': 'L', '115 ': 'P', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGGTATATGAG-1_contig_2
|
GGGGAGTGACTCCTGTGCCCCACCATGGACACACTTTGCTCCACGCTCCTGCTGCTGACCATCCCTTCATGGGTCTTGTCCCAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGAATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACACTAAGGTGGCTGGGTCCCCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV2-5*01
|
IGHD6-19*01
|
IGHJ4*02
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGAATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACACTAAGGTGGCTGGGTCCCCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGAATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACANNNNNGTGGCTGGNNNNNNCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QITLKESGPTLVKPTQTLTLTCTFSGFSLSTSGVGVGWIRQPPGKALEWLALIYWNDDKRYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCAHTKVAGSPFDYWGQGTLVTVSS
|
QITLKESGPTLVKPTQTLTLTCTFSGFSLSTSGVGVGWIRQPPGKALEWLALIYWNDDKRYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCAHXXVAGXXFDYWGQGTLVTVSS
|
1
|
298
|
304.0
|
311.0
|
318
|
361
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGAATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACA
|
QITLKESGPTLVKPTQTLTLTCTFSGFSLSTSGVGVGWIRQPPGKALEWLALIYWNDDKRYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCAH
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGAATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACA
|
QITLKESGPTLVKPTQTLTLTCTFSGFSLSTSGVGVGWIRQPPGKALEWLALIYWNDDKRYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCAH
|
GTGGCTGG
|
VAG
|
GTGGCTGG
|
VAG
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCT
|
QITLKESGPTLVKPTQTLTLTCTFS
|
GGGTTCTCACTCAGCACTAGTGGAGTGGGT
|
GFSLSTSGVG
|
GTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTC
|
VGWIRQPPGKALEWLAL
|
ATTTATTGGAATGATGATAAG
|
IYWNDDK
|
CGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGT
|
RYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCACACACTAAGGTGGCTGGGTCCCCCTTTGACTAC
|
AHTKVAGSPFDY
|
TGTGCACACACTAAGGTGGCTGGGTCCCCCTTTGACTACTGG
|
42.0
|
CAHTKVAGSPFDYW
|
14.0
|
466.153
|
16.069
|
85.286
|
81S298M134S3N
|
384S10N8M121S3N
|
398S4N44M71S
|
2.81e-133
|
3.337
|
1.0570000000000001e-20
|
100.0
|
100.0
|
100.0
|
82
|
379
|
1
|
298
|
385.0
|
392.0
|
11.0
|
18.0
|
399
|
442
|
5
|
48
|
82
|
156
|
157
|
186
|
187
|
237
|
238
|
258
|
259
|
372
|
409.0
|
441.0
|
373.0
|
408.0
|
CTAAG
|
5
|
GTCCCC
|
6.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'I', '3 ': 'T', '4 ': 'L', '5 ': 'K', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'T', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'T', '17 ': 'Q', '18 ': 'T', '19 ': 'L', '20 ': 'T', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'F', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'S', '30 ': 'L', '31 ': 'S', '34 ': 'T', '35 ': 'S', '36 ': 'G', '37 ': 'V', '38 ': 'G'}, 'fwh2': {'39 ': 'V', '40 ': 'G', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'L', '54 ': 'A', '55 ': 'L'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'W', '59 ': 'N', '63 ': 'D', '64 ': 'D', '65 ': 'K'}, 'fwh3': {'66 ': 'R', '67 ': 'Y', '68 ': 'S', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'L', '77 ': 'T', '78 ': 'I', '79 ': 'T', '80 ': 'K', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'V', '88 ': 'V', '89 ': 'L', '90 ': 'T', '91 ': 'M', '92 ': 'T', '93 ': 'N', '94 ': 'M', '95 ': 'D', '96 ': 'P', '97 ': 'V', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'H', '107 ': 'T', '108 ': 'K', '109 ': 'V', '110 ': 'A', '112 ': 'G', '113 ': 'S', '114 ': 'P', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGGTATATGAG-1_contig_1
|
GGGGGAGTCAGTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGGCTCCGAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCGAGTATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-39*01
| null |
IGKJ3*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCGAGTATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCNNNNATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTRVFTFGPGTKVDIK
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTXXFTFGPGTKVDIK
|
1
|
283
| null | null |
288
|
325
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYST
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYST
| null | null | null | null |
ATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
FTFGPGTKVDIK
|
ATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
FTFGPGTKVDIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGT
|
DIQMTQSPSSLSASVGDRVTITCRAS
|
CAGAGCATTAGCAGCTAT
|
QSISSY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LNWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTCGGCCCTGGGACCAAAGTGGATATCAAA
|
FGPGTKVDIK
|
CAACAGAGTTACAGTACCCGAGTATTCACT
|
QQSYSTRVFT
|
TGTCAACAGAGTTACAGTACCCGAGTATTCACTTTC
|
36.0
|
CQQSYSTRVFTF
|
12.0
|
442.782
| null |
73.749
|
95S283M178S4N
| null |
382S38M136S
|
3.3199999999999997e-126
| null |
3.408e-17
|
100.0
| null |
100.0
|
96
|
378
|
1
|
283
| null | null | null | null |
383
|
420
|
1
|
38
|
96
|
173
|
174
|
191
|
192
|
242
|
243
|
251
|
252
|
359
|
390.0
|
419.0
|
360.0
|
389.0
|
GAGT
|
4
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'S', '108 ': 'Y', '109 ': 'S', '113 ': 'T', '114 ': 'R', '115 ': 'V', '116 ': 'F', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'P', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'D', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGGTCTAGCGC-1_contig_2
|
AGCTCTGGGAGAGGAGCCCCAGCCCTGAGATTCCCAGGTGTTTCCATTCGGTGATCAGCACTGAACACAGAGAACTCACCATGGAGTTTGGACTGAGCTGGGTTTTCCTTGTTGCTATTTTAAAAGGTGTCCAGTGTGAAGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGTCAAGCTCCAGGGAAGGGTCTGGAGTGGGTCTCTCTTATTAGTGGGGATGGTGGTAGCACATACTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACAGCAAAAACTCCCTGTATCTGCAAATGAACAGTCTGAGAACTGAGGACACCGCCTTGTATTACTGTGCAAAAGATATGGCCCCTGACTACTATGATAGTAGCCCCAAGGGGGGGGGCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-43*02
|
IGHD3-22*01
|
IGHJ4*02
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGTCAAGCTCCAGGGAAGGGTCTGGAGTGGGTCTCTCTTATTAGTGGGGATGGTGGTAGCACATACTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACAGCAAAAACTCCCTGTATCTGCAAATGAACAGTCTGAGAACTGAGGACACCGCCTTGTATTACTGTGCAAAAGATATGGCCCCTGACTACTATGATAGTAGCCCCAAGGGGGGGGGCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGTCAAGCTCCAGGGAAGGGTCTGGAGTGGGTCTCTCTTATTAGTGGGGATGGTGGTAGCACATACTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACAGCAAAAACTCCCTGTATCTGCAAATGAACAGTCTGAGAACTGAGGACACCGCCTTGTATTACTGTGCAAAAGATANNNNNNNNNNNTACTATGATAGTAGNNNNNNNNNNNNNNNCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGVVQPGGSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSLISGDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRTEDTALYYCAKDMAPDYYDSSPKGGGFDYWGQGTLVTVSS
|
EVQLVESGGGVVQPGGSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSLISGDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRTEDTALYYCAKDXXXXYYDSXXXXXXFDYWGQGTLVTVSS
|
1
|
298
|
310.0
|
323.0
|
339
|
382
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGTCAAGCTCCAGGGAAGGGTCTGGAGTGGGTCTCTCTTATTAGTGGGGATGGTGGTAGCACATACTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACAGCAAAAACTCCCTGTATCTGCAAATGAACAGTCTGAGAACTGAGGACACCGCCTTGTATTACTGTGCAAAAGATA
|
EVQLVESGGGVVQPGGSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSLISGDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRTEDTALYYCAKD
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGTCAAGCTCCAGGGAAGGGTCTGGAGTGGGTCTCTCTTATTAGTGGGGATGGTGGTAGCACATACTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACAGCAAAAACTCCCTGTATCTGCAAATGAACAGTCTGAGAACTGAGGACACCGCCTTGTATTACTGTGCAAAAGATA
|
EVQLVESGGGVVQPGGSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSLISGDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRTEDTALYYCAKD
|
TACTATGATAGTAG
|
YYDS
|
TACTATGATAGTAG
|
YYDS
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGVVQPGGSLRLSCAAS
|
GGATTCACCTTTGATGATTATGCC
|
GFTFDDYA
|
ATGCACTGGGTCCGTCAAGCTCCAGGGAAGGGTCTGGAGTGGGTCTCTCTT
|
MHWVRQAPGKGLEWVSL
|
ATTAGTGGGGATGGTGGTAGCACA
|
ISGDGGST
|
TACTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACAGCAAAAACTCCCTGTATCTGCAAATGAACAGTCTGAGAACTGAGGACACCGCCTTGTATTACTGT
|
YYADSVKGRFTISRDNSKNSLYLQMNSLRTEDTALYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCAAAAGATATGGCCCCTGACTACTATGATAGTAGCCCCAAGGGGGGGGGCTTTGACTAC
|
AKDMAPDYYDSSPKGGGFDY
|
TGTGCAAAAGATATGGCCCCTGACTACTATGATAGTAGCCCCAAGGGGGGGGGCTTTGACTACTGG
|
66.0
|
CAKDMAPDYYDSSPKGGGFDYW
|
22.0
|
466.153
|
27.605
|
85.286
|
137S298M155S
|
446S4N14M130S13N
|
475S4N44M71S
|
3.2369999999999998e-133
|
0.001296
|
1.2190000000000001e-20
|
100.0
|
100.0
|
100.0
|
138
|
435
|
1
|
298
|
447.0
|
460.0
|
5.0
|
18.0
|
476
|
519
|
5
|
48
|
138
|
212
|
213
|
236
|
237
|
287
|
288
|
311
|
312
|
425
|
486.0
|
518.0
|
426.0
|
485.0
|
TGGCCCCTGAC
|
11
|
CCCCAAGGGGGGGGG
|
15.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'V', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'D', '36 ': 'D', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'L'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'G', '59 ': 'D', '62 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'T', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'L', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'D', '108 ': 'M', '109 ': 'A', '110 ': 'P', '111 ': 'D', '111A': 'Y', '111B': 'Y', '111C': 'D', '112D': 'S', '112C': 'S', '112B': 'P', '112A': 'K', '112 ': 'G', '113 ': 'G', '114 ': 'G', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGGTCTAGCGC-1_contig_1
|
GGGAGAGCCCTGGGGAGGAACTGCTCAGTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACCGGAGAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGCCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-11*01
| null |
IGKJ1*01
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGCCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNCPWTFGQGTKVEIK
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPWTFGQGTKVEIK
|
1
|
284
| null | null |
285
|
322
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGCCC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNCP
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWP
| null | null | null | null |
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVLTQSPATLSLSPGERATLSCRAS
|
CAGAGTGTTAGCAGCTAC
|
QSVSSY
|
TTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GATGCATCC
|
DAS
|
AACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGT
|
NRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAGCAGCGTAGCAACTGCCCGTGGACG
|
QQRSNCPWT
|
TGTCAGCAGCGTAGCAACTGCCCGTGGACGTTC
|
33.0
|
CQQRSNCPWTF
|
11.0
|
441.224
| null |
73.749
|
107S284M174S3N
| null |
391S38M136S
|
9.942e-126
| null |
3.465e-17
|
99.648
| null |
100.0
|
108
|
391
|
1
|
284
| null | null | null | null |
392
|
429
|
1
|
38
|
108
|
185
|
186
|
203
|
204
|
254
|
255
|
263
|
264
|
371
|
399.0
|
428.0
|
372.0
|
398.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'A', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'L', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'A', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'E', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'R', '108 ': 'S', '109 ': 'N', '114 ': 'C', '115 ': 'P', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGGTGAGGGTT-1_contig_2
|
AGCTCTGAGAGAGGAGCCCAGCCCTGGGATTTTCAGGTGTTTTCATTTGGTGATCAGGACTGAACAGAGAGAACTCACCATGGAGTTTGGGCTGAGCTGGCTTTTTCTTGTGGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGCGTTCCCCGGGGAGCTACTCCTTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-23*01
|
IGHD1-26*01
|
IGHJ4*02
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGCGTTCCCCGGGGAGCTACTCCTTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGNNNNNNNNNGGGAGCTACTNNNNTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKAFPGELLLFDYWGQGTLVTVSS
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKXXXXELLXFDYWGQGTLVTVSS
|
1
|
295
|
305.0
|
314.0
|
319
|
361
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAG
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAG
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
GGGAGCTACT
|
ELL
|
GGGAGCTACT
|
ELL
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLLESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTTAGCAGCTATGCC
|
GFTFSSYA
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCT
|
MSWVRQAPGKGLEWVSA
|
ATTAGTGGTAGTGGTGGTAGCACA
|
ISGSGGST
|
TACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAAAGCGTTCCCCGGGGAGCTACTCCTTTTTGACTAC
|
AKAFPGELLLFDY
|
TGTGCGAAAGCGTTCCCCGGGGAGCTACTCCTTTTTGACTACTGG
|
45.0
|
CAKAFPGELLLFDYW
|
15.0
|
461.479
|
19.914
|
83.363
|
136S295M137S1N
|
440S8N10M118S2N
|
454S5N43M71S
|
7.987000000000001e-132
|
0.2575
|
4.4470000000000005e-20
|
100.0
|
100.0
|
100.0
|
137
|
431
|
1
|
295
|
441.0
|
450.0
|
9.0
|
18.0
|
455
|
497
|
6
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
464.0
|
496.0
|
425.0
|
463.0
|
CGTTCCCCG
|
9
|
CCTT
|
4.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'L', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'A'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'G', '59 ': 'S', '62 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'A', '108 ': 'F', '109 ': 'P', '110 ': 'G', '111 ': 'E', '112 ': 'L', '113 ': 'L', '114 ': 'L', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGGTGAGGGTT-1_contig_1
|
AGGAGTCAGACCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCCCAGGTGCCAAATGTGACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCTCCGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-5*03
| null |
IGKJ1*01
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCTCCGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCTCCGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYSPTFGQGTKVEIK
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYSPTFGQGTKVEIK
|
1
|
287
| null | null |
288
|
322
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCTCC
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYSP
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCTCC
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYSP
| null | null | null | null |
GACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
GACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGT
|
DIQMTQSPSTLSASVGDRVTITCRAS
|
CAGAGTATTAGTAGCTGG
|
QSISSW
|
TTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LAWYQQKPGKAPKLLIY
|
AAGGCGTCT
|
KAS
|
AGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGC
|
SLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAACAGTATAATAGTTATTCTCCGACG
|
QQYNSYSPT
|
TGCCAACAGTATAATAGTTATTCTCCGACGTTC
|
33.0
|
CQQYNSYSPTF
|
11.0
|
449.014
| null |
67.981
|
93S287M171S
| null |
380S3N35M136S
|
4.3730000000000004e-128
| null |
1.84e-15
|
100.0
| null |
100.0
|
94
|
380
|
1
|
287
| null | null | null | null |
381
|
415
|
4
|
38
|
94
|
171
|
172
|
189
|
190
|
240
|
241
|
249
|
250
|
357
|
385.0
|
414.0
|
358.0
|
384.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'W'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'K', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'E', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'D', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'N', '109 ': 'S', '114 ': 'Y', '115 ': 'S', '116 ': 'P', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGGTGTAACGG-1_contig_2
|
AGCTCTGAGAGAGGAGCCCAGCCCTGGGATTTTCAGGTGTTTTCATTTGGTGATCAGGACTGAACAGAGAGAACTCACCATGGAGTTTGGGCTGAGCTGGCTTTTTCTTGTGGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAACCGAATTTTTTACTATGATAGTAGTGGCGAGGGGTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-23*01
|
IGHD3-22*01
|
IGHJ4*02
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAACCGAATTTTTTACTATGATAGTAGTGGCGAGGGGTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAANNNNNNNNNTTACTATGATAGTAGTGGNNNNNNNTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCANRIFYYDSSGEGYWGQGTLVTVSS
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAXXXXYYDSSGXXYWGQGTLVTVSS
|
1
|
293
|
303.0
|
320.0
|
328
|
364
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAA
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCA
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAA
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCA
|
TTACTATGATAGTAGTGG
|
YYDSSG
|
TTACTATGATAGTAGTGG
|
YYDSSG
|
TACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YWGQGTLVTVSS
|
TACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YWGQGTLVTVSS
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLLESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTTAGCAGCTATGCC
|
GFTFSSYA
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCT
|
MSWVRQAPGKGLEWVSA
|
ATTAGTGGTAGTGGTGGTAGCACA
|
ISGSGGST
|
TACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAACCGAATTTTTTACTATGATAGTAGTGGCGAGGGGTAC
|
ANRIFYYDSSGEGY
|
TGTGCGAACCGAATTTTTTACTATGATAGTAGTGGCGAGGGGTACTGG
|
48.0
|
CANRIFYYDSSGEGYW
|
16.0
|
458.363
|
35.296
|
71.827
|
136S293M142S3N
|
438S3N18M115S10N
|
463S11N37M71S
|
6.964000000000005e-131
|
6.065e-06
|
1.328e-16
|
100.0
|
100.0
|
100.0
|
137
|
429
|
1
|
293
|
439.0
|
456.0
|
4.0
|
21.0
|
464
|
500
|
12
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
467.0
|
499.0
|
425.0
|
466.0
|
CCGAATTTT
|
9
|
CGAGGGG
|
7.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'L', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'A'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'G', '59 ': 'S', '62 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'N', '107 ': 'R', '108 ': 'I', '109 ': 'F', '110 ': 'Y', '111 ': 'Y', '112A': 'D', '112 ': 'S', '113 ': 'S', '114 ': 'G', '115 ': 'E', '116 ': 'G', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGGTGTAACGG-1_contig_1
|
AGGAGTCAGACCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGTTCCCAGGTTCCAGATGCGACATCCAGATGACCCAGTCTCCATCTTCTGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACTATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCCCTAACTTTCGGCCCTGGGACCAAAGTGGATATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1D-12*01
| null |
IGKJ3*01
|
GACATCCAGATGACCCAGTCTCCATCTTCTGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACTATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCCCTAACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCTTCTGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACTATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCNNNNACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFPLTFGPGTKVDIK
|
DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFPXTFGPGTKVDIK
|
1
|
284
| null | null |
289
|
322
|
GACATCCAGATGACCCAGTCTCCATCTTCTGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACTATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCC
|
DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFP
|
GACATCCAGATGACCCAGTCTCCATCTTCTGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACTATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCC
|
DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFP
| null | null | null | null |
ACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
TFGPGTKVDIK
|
ACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
TFGPGTKVDIK
|
GACATCCAGATGACCCAGTCTCCATCTTCTGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGT
|
DIQMTQSPSSVSASVGDRVTITCRAS
|
CAGGGTATTAGCAGCTGG
|
QGISSW
|
TTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LAWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACTATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTCGGCCCTGGGACCAAAGTGGATATCAAA
|
FGPGTKVDIK
|
CAACAGGCTAACAGTTTCCCCCTAACT
|
QQANSFPLT
|
TGTCAACAGGCTAACAGTTTCCCCCTAACTTTC
|
33.0
|
CQQANSFPLTF
|
11.0
|
444.34
| null |
66.059
|
93S284M174S3N
| null |
381S4N34M136S
|
1.117e-126
| null |
6.977e-15
|
100.0
| null |
100.0
|
94
|
377
|
1
|
284
| null | null | null | null |
382
|
415
|
5
|
38
|
94
|
171
|
172
|
189
|
190
|
240
|
241
|
249
|
250
|
357
|
385.0
|
414.0
|
358.0
|
384.0
|
CCTA
|
4
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'G', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'W'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'A', '108 ': 'N', '109 ': 'S', '114 ': 'F', '115 ': 'P', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'P', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'D', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGGTGTATGGG-1_contig_1
|
GAGCTCTGGGAGAGGAGCCCAGCACTAGAAGTCGGCGGTGTTTCCATTCGGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTCCTCGTTGCTCTTTTAAGAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAGTCCGGGGCTTAGGGGAATTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-30*18
|
IGHD3-10*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAGTCCGGGGCTTAGGGGAATTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAGNNCGGGGNNNNNNNNNNTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVRGLGEFDYWGQGTLVTVSS
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKXRGXXXFDYWGQGTLVTVSS
|
1
|
295
|
298.0
|
302.0
|
313
|
355
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
CGGGG
|
RG
|
CGGGG
|
RG
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
QVQLVESGGGVVQPGRSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATGGC
|
GFTFSSYG
|
ATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTT
|
MHWVRQAPGKGLEWVAV
|
ATATCATATGATGGAAGTAATAAA
|
ISYDGSNK
|
TACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAAAGTCCGGGGCTTAGGGGAATTTGACTAC
|
AKVRGLGEFDY
|
TGTGCGAAAGTCCGGGGCTTAGGGGAATTTGACTACTGG
|
39.0
|
CAKVRGLGEFDYW
|
13.0
|
461.479
|
10.301
|
83.363
|
137S295M131S1N
|
434S14N5M124S12N
|
449S5N43M71S
|
7.913000000000001e-132
|
199.9
|
4.4070000000000004e-20
|
100.0
|
100.0
|
100.0
|
138
|
432
|
1
|
295
|
435.0
|
439.0
|
15.0
|
19.0
|
450
|
492
|
6
|
48
|
138
|
212
|
213
|
236
|
237
|
287
|
288
|
311
|
312
|
425
|
459.0
|
491.0
|
426.0
|
458.0
|
TC
|
2
|
CTTAGGGGAA
|
10.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'V', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'G'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'Y', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'N', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'V', '108 ': 'R', '109 ': 'G', '110 ': 'L', '113 ': 'G', '114 ': 'E', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGGTGTATGGG-1_contig_2
|
AGTCCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCCCAGGTGCCAGATGTGACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTCTATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-9*01
| null |
IGKJ3*01
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTCTATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTNNATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSLFTFGPGTKVDIK
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSXFTFGPGTKVDIK
|
1
|
279
| null | null |
282
|
319
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGT
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNS
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGT
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNS
| null | null | null | null |
ATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
FTFGPGTKVDIK
|
ATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
FTFGPGTKVDIK
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGT
|
DIQLTQSPSFLSASVGDRVTITCRAS
|
CAGGGCATTAGCAGTTAT
|
QGISSY
|
TTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LAWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
ACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGT
|
TLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYC
|
TTCGGCCCTGGGACCAAAGTGGATATCAAA
|
FGPGTKVDIK
|
CAACAGCTTAATAGTCTATTCACT
|
QQLNSLFT
|
TGTCAACAGCTTAATAGTCTATTCACTTTC
|
30.0
|
CQQLNSLFTF
|
10.0
|
436.549
| null |
73.749
|
86S279M176S8N
| null |
367S38M136S
|
2.4250000000000003e-124
| null |
3.314e-17
|
100.0
| null |
100.0
|
87
|
365
|
1
|
279
| null | null | null | null |
368
|
405
|
1
|
38
|
87
|
164
|
165
|
182
|
183
|
233
|
234
|
242
|
243
|
350
|
375.0
|
404.0
|
351.0
|
374.0
|
CT
|
2
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'F', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'G', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'L', '108 ': 'N', '114 ': 'S', '115 ': 'L', '116 ': 'F', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'P', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'D', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGTCAGAAATG-1_contig_1
|
GGGGAGGGTCCTGCTCACATGGGAAATACTTTCTGAGAGTCCTGGACCTCCTGTGCAAGAACATGAAACACCTGTGGTTCTTCCTCCTGCTGGTGGCAGCTCCCAGATGGGTCCTGTCCCAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGGTTACTACTGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGTGCGAGAGCCCCGTATTACGATTTTTGGAGTGGTCCCGATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-31*03
|
IGHD3-3*01
|
IGHJ6*02
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGGTTACTACTGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGTGCGAGAGCCCCGTATTACGATTTTTGGAGTGGTCCCGATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGGTTACTACTGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGTGCGAGAGNNNNGTATTACGATTTTTGGAGTGGTNNNNATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGGYYWSWIRQHPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARAPYYDFWSGPDYYYYYGMDVWGQGTTVTVSS
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGGYYWSWIRQHPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARXXYYDFWSGXXYYYYYGMDVWGQGTTVTVSS
|
1
|
298
|
303.0
|
324.0
|
329
|
390
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGGTTACTACTGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGGYYWSWIRQHPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGGTTACTACTGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGGYYWSWIRQHPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
GTATTACGATTTTTGGAGTGGT
|
YYDFWSG
|
GTATTACGATTTTTGGAGTGGT
|
YYDFWSG
|
ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYYGMDVWGQGTTVTVSS
|
ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYYGMDVWGQGTTVTVSS
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QVQLQESGPGLVKPSQTLSLTCTVS
|
GGTGGCTCCATCAGCAGTGGTGGTTACTAC
|
GGSISSGGYY
|
TGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTAC
|
WSWIRQHPGKGLEWIGY
|
ATCTATTACAGTGGGAGCACC
|
IYYSGST
|
TACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGT
|
YYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAGAGCCCCGTATTACGATTTTTGGAGTGGTCCCGATTACTACTACTACTACGGTATGGACGTC
|
ARAPYYDFWSGPDYYYYYGMDV
|
TGTGCGAGAGCCCCGTATTACGATTTTTGGAGTGGTCCCGATTACTACTACTACTACGGTATGGACGTCTGG
|
72.0
|
CARAPYYDFWSGPDYYYYYGMDVW
|
24.0
|
466.153
|
42.986
|
119.894
|
119S298M164S1N
|
421S22M138S9N
|
447S62M72S
|
3.1859999999999998e-133
|
2.988e-08
|
4.583000000000001e-31
|
100.0
|
100.0
|
100.0
|
120
|
417
|
1
|
298
|
422.0
|
443.0
|
1.0
|
22.0
|
448
|
509
|
1
|
62
|
120
|
194
|
195
|
224
|
225
|
275
|
276
|
296
|
297
|
410
|
477.0
|
509.0
|
411.0
|
476.0
|
CCCC
|
4
|
CCCG
|
4.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'Q', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '34 ': 'S', '35 ': 'G', '36 ': 'G', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'S', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'H', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'Y'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'Y', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'A', '108 ': 'P', '109 ': 'Y', '110 ': 'Y', '111 ': 'D', '111A': 'F', '111B': 'W', '111C': 'S', '111D': 'G', '112E': 'P', '112D': 'D', '112C': 'Y', '112B': 'Y', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGTCAGAAATG-1_contig_2
|
GATCAGGACTTCTCAGTTCATCTTCTCACCATGAGGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCTCTGGATACCTGGATCCAGTGCAGATATTGTGATGACCCAGACTCCACTCTCTCTGTCCGTCACCCCTGGACAGCCGGCCTCCATCTCCTGCAAGTCTAGTCAGAGCCTCCTGCATAGTGATGGAAAGACCTATTTGTATTGGTACCTGCAGAAGCCAGGCCAGCCTCCACAGCTCCTGATCTATGAAGTTTCCAACCGGTTCTCTGGAGTGCCAGATAGGTTCAGTGGCAGCGGGTCAGGGACAGATTTCACACTGAAAATCAGCCGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAAGTATACAGCTTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV2D-29*01
| null |
IGKJ4*01
|
GATATTGTGATGACCCAGACTCCACTCTCTCTGTCCGTCACCCCTGGACAGCCGGCCTCCATCTCCTGCAAGTCTAGTCAGAGCCTCCTGCATAGTGATGGAAAGACCTATTTGTATTGGTACCTGCAGAAGCCAGGCCAGCCTCCACAGCTCCTGATCTATGAAGTTTCCAACCGGTTCTCTGGAGTGCCAGATAGGTTCAGTGGCAGCGGGTCAGGGACAGATTTCACACTGAAAATCAGCCGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAAGTATACAGCTTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GATATTGTGATGACCCAGACTCCACTCTCTCTGTCCGTCACCCCTGGACAGCCGGCCTCCATCTCCTGCAAGTCTAGTCAGAGCCTCCTGCATAGTGATGGAAAGACCTATTTGTATTGGTACCTGCAGAAGCCAGGCCAGCCTCCACAGCTCCTGATCTATGAAGTTTCCAACCGGTTCTCTGGAGTGCCAGATAGGTTCAGTGGCAGCGGGTCAGGGACAGATTTCACACTGAAAATCAGCCGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAAGTATACAGCTTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
DIVMTQTPLSLSVTPGQPASISCKSSQSLLHSDGKTYLYWYLQKPGQPPQLLIYEVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSIQLPLTFGGGTKVEIK
|
DIVMTQTPLSLSVTPGQPASISCKSSQSLLHSDGKTYLYWYLQKPGQPPQLLIYEVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSIQLPLTFGGGTKVEIK
|
1
|
299
| null | null |
300
|
337
|
GATATTGTGATGACCCAGACTCCACTCTCTCTGTCCGTCACCCCTGGACAGCCGGCCTCCATCTCCTGCAAGTCTAGTCAGAGCCTCCTGCATAGTGATGGAAAGACCTATTTGTATTGGTACCTGCAGAAGCCAGGCCAGCCTCCACAGCTCCTGATCTATGAAGTTTCCAACCGGTTCTCTGGAGTGCCAGATAGGTTCAGTGGCAGCGGGTCAGGGACAGATTTCACACTGAAAATCAGCCGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAAGTATACAGCTTCC
|
DIVMTQTPLSLSVTPGQPASISCKSSQSLLHSDGKTYLYWYLQKPGQPPQLLIYEVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSIQLP
|
GATATTGTGATGACCCAGACTCCACTCTCTCTGTCCGTCACCCCTGGACAGCCGGCCTCCATCTCCTGCAAGTCTAGTCAGAGCCTCCTGCATAGTGATGGAAAGACCTATTTGTATTGGTACCTGCAGAAGCCAGGCCAGCCTCCACAGCTCCTGATCTATGAAGTTTCCAACCGGTTCTCTGGAGTGCCAGATAGGTTCAGTGGCAGCGGGTCAGGGACAGATTTCACACTGAAAATCAGCCGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAAGTATACAGCTTCC
|
DIVMTQTPLSLSVTPGQPASISCKSSQSLLHSDGKTYLYWYLQKPGQPPQLLIYEVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSIQLP
| null | null | null | null |
GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GATATTGTGATGACCCAGACTCCACTCTCTCTGTCCGTCACCCCTGGACAGCCGGCCTCCATCTCCTGCAAGTCTAGT
|
DIVMTQTPLSLSVTPGQPASISCKSS
|
CAGAGCCTCCTGCATAGTGATGGAAAGACCTAT
|
QSLLHSDGKTY
|
TTGTATTGGTACCTGCAGAAGCCAGGCCAGCCTCCACAGCTCCTGATCTAT
|
LYWYLQKPGQPPQLLIY
|
GAAGTTTCC
|
EVS
|
AACCGGTTCTCTGGAGTGCCAGATAGGTTCAGTGGCAGCGGGTCAGGGACAGATTTCACACTGAAAATCAGCCGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGC
|
NRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
ATGCAAAGTATACAGCTTCCGCTCACT
|
MQSIQLPLT
|
TGCATGCAAAGTATACAGCTTCCGCTCACTTTC
|
33.0
|
CMQSIQLPLTF
|
11.0
|
467.712
| null |
73.749
|
90S299M174S3N
| null |
389S38M136S
|
1.052e-133
| null |
3.452e-17
|
100.0
| null |
100.0
|
91
|
389
|
1
|
299
| null | null | null | null |
390
|
427
|
1
|
38
|
91
|
168
|
169
|
201
|
202
|
252
|
253
|
261
|
262
|
369
|
397.0
|
426.0
|
370.0
|
396.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'T', '8 ': 'P', '9 ': 'L', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'V', '14 ': 'T', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'P', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'S', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'L', '30 ': 'L', '31 ': 'H', '32 ': 'S', '34 ': 'D', '35 ': 'G', '36 ': 'K', '37 ': 'T', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'Y', '41 ': 'W', '42 ': 'Y', '43 ': 'L', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'P', '50 ': 'P', '51 ': 'Q', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'E', '57 ': 'V', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'F', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'K', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'V', '95 ': 'E', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'V', '100 ': 'G', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'M', '106 ': 'Q', '107 ': 'S', '108 ': 'I', '109 ': 'Q', '114 ': 'L', '115 ': 'P', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGTCGGTCCGA-1_contig_1
|
AGGTCTCAGAGAGGAGCCTTAGCCCTGGACTCCAAGGCCTTTCCACTTGGTGATCAGCACTGAGCACAGAGGACTCACCATGGAATTGGGGCTGAGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGACCTACGGTGATAATGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-7*01
|
IGHD4-17*01
|
IGHJ3*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGACCTACGGTGATAATGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGANCTACGGTGANNNTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCATYGDNDAFDIWGQGTMVTVSS
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAXYGXXDAFDIWGQGTMVTVSS
|
1
|
292
|
294.0
|
302.0
|
306
|
355
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCA
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCA
|
CTACGGTGA
|
YG
|
CTACGGTGA
|
YG
|
TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTTAGTAGCTATTGG
|
GFTFSSYW
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAAC
|
MSWVRQAPGKGLEWVAN
|
ATAAAGCAAGATGGAAGTGAGAAA
|
IKQDGSEK
|
TACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGT
|
YYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
GCGACCTACGGTGATAATGATGCTTTTGATATC
|
ATYGDNDAFDI
|
TGTGCGACCTACGGTGATAATGATGCTTTTGATATCTGG
|
39.0
|
CATYGDNDAFDIW
|
13.0
|
456.805
|
17.992
|
96.822
|
136S292M134S4N
|
429S3N9M124S4N
|
441S50M71S
|
2.017e-130
|
0.9658
|
3.907e-24
|
100.0
|
100.0
|
100.0
|
137
|
428
|
1
|
292
|
430.0
|
438.0
|
4.0
|
12.0
|
442
|
491
|
1
|
50
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
458.0
|
490.0
|
425.0
|
457.0
|
C
|
1
|
TAA
|
3.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'W'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'N'}, 'cdrh2': {'56 ': 'I', '57 ': 'K', '58 ': 'Q', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'E', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'V', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'T', '107 ': 'Y', '108 ': 'G', '109 ': 'D', '110 ': 'N', '113 ': 'D', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGTCGGTCCGA-1_contig_2
|
ATCTCCTCCAGCAGCAGCCTCTGACTCTGCTGATTTGCATCATGGGCCGCTCTCTCCAGCAAGGGGATAAGAGAGGCCTGGGAGGAACCTGCTCAGTCTGGGCCTAAGGAAGCAGCACTGGTGGTGCCTCAGCCATGGCCTGGACCGTTCTCCTCCTCGGCCTCCTCTCTCACTGCACAGGCTCTGTGACCTCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCTTTCTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-21*02
| null |
IGLJ3*02
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCTTTCTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCNNNNTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDLSWVFGGGTKLTVL
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDXXWVFGGGTKLTVL
|
1
|
286
| null | null |
291
|
328
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATC
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSD
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATC
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSD
| null | null | null | null |
TTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
TTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAAC
|
SYVLTQPPSVSVAPGQTARITCGGN
|
AACATTGGAAGTAAAAGT
|
NIGSKS
|
GTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTAT
|
VHWYQQKPGQAPVLVVY
|
GATGATAGC
|
DDS
|
GACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGT
|
DRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGGTGTGGGATAGTAGTAGTGATCTTTCTTGGGTG
|
QVWDSSSDLSWV
|
TGTCAGGTGTGGGATAGTAGTAGTGATCTTTCTTGGGTGTTC
|
42.0
|
CQVWDSSSDLSWVF
|
14.0
|
447.456
| null |
73.749
|
191S286M253S4N
| null |
481S38M211S
|
1.72e-127
| null |
4.496e-17
|
100.0
| null |
100.0
|
192
|
477
|
1
|
286
| null | null | null | null |
482
|
519
|
1
|
38
|
192
|
266
|
267
|
284
|
285
|
335
|
336
|
344
|
345
|
452
|
489.0
|
518.0
|
453.0
|
488.0
|
TTTC
|
4
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'A', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'R', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'G', '25 ': 'G', '26 ': 'N'}, 'cdrl1': {'27 ': 'N', '28 ': 'I', '29 ': 'G', '36 ': 'S', '37 ': 'K', '38 ': 'S'}, 'fwl2': {'39 ': 'V', '40 ': 'H', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'V', '55 ': 'Y'}, 'cdrl2': {'56 ': 'D', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'D', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'N', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'V', '95 ': 'E', '96 ': 'A', '97 ': 'G', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'V', '107 ': 'W', '108 ': 'D', '109 ': 'S', '110 ': 'S', '112 ': 'S', '113 ': 'D', '114 ': 'L', '115 ': 'S', '116 ': 'W', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGTCTAGCACA-1_contig_2
|
GAGCTCTGGGAGAGGAGCCCAGCACTAGAAGTCGGCGGTGTTTCCATTCGGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTCCTCGTTGCTCTTTTAAGAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGGACGGTAAAGTGGGAGCTACCAATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-33*01
|
IGHD1-26*01
|
IGHJ6*02
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGGACGGTAAAGTGGGAGCTACCAATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGANNNNGGTATAGTGGGAGCTACNNATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREDGKVGATNYYYYYGMDVWGQGTTVTVSS
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARXXGIVGATXYYYYYGMDVWGQGTTVTVSS
|
1
|
296
|
301.0
|
317.0
|
320
|
381
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
GGTAAAGTGGGAGCTAC
|
GKVGAT
|
GGTATAGTGGGAGCTAC
|
GIVGAT
|
ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYYGMDVWGQGTTVTVSS
|
ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYYGMDVWGQGTTVTVSS
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCT
|
QVQLVESGGGVVQPGRSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATGGC
|
GFTFSSYG
|
ATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTT
|
MHWVRQAPGKGLEWVAV
|
ATATGGTATGATGGAAGTAATAAA
|
IWYDGSNK
|
TACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAGAGAGGACGGTAAAGTGGGAGCTACCAATTACTACTACTACTACGGTATGGACGTC
|
AREDGKVGATNYYYYYGMDV
|
TGTGCGAGAGAGGACGGTAAAGTGGGAGCTACCAATTACTACTACTACTACGGTATGGACGTCTGG
|
66.0
|
CAREDGKVGATNYYYYYGMDVW
|
22.0
|
463.037
|
27.605
|
119.894
|
137S296M157S
|
437S17M136S3N
|
456S62M72S
|
2.807e-132
|
0.001296
|
4.655e-31
|
100.0
|
94.118
|
100.0
|
138
|
433
|
1
|
296
|
438.0
|
454.0
|
1.0
|
17.0
|
457
|
518
|
1
|
62
|
138
|
212
|
213
|
236
|
237
|
287
|
288
|
311
|
312
|
425
|
486.0
|
518.0
|
426.0
|
485.0
|
GGAC
|
4
|
CA
|
2.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'V', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'G'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'W', '58 ': 'Y', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'N', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'E', '108 ': 'D', '109 ': 'G', '110 ': 'K', '111 ': 'V', '111A': 'G', '111B': 'A', '111C': 'T', '112D': 'N', '112C': 'Y', '112B': 'Y', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGTCTAGCACA-1_contig_1
|
CTGGGCCTCAGGAAGCAGCATCGGAGGTGCCTCAGCCATGGCATGGATCCCTCTCTTCCTCGGCGTCCTTGCTTACTGCACAGGTTCCGTGGCCTCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACCGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-1*01
| null |
IGLJ2*01
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACCGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACNGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTVVFGGGTKLTVL
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTVVFGGGTKLTVL
|
1
|
281
| null | null |
283
|
319
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCAC
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSST
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCAC
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSST
| null | null | null | null |
GTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
GTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGAT
|
SYELTQPPSVSVSPGQTASITCSGD
|
AAATTGGGGGATAAATAT
|
KLGDKY
|
GCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTAT
|
ACWYQQKPGQSPVLVIY
|
CAAGATAGC
|
QDS
|
AAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGT
|
KRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGGCGTGGGACAGCAGCACCGTGGTA
|
QAWDSSTVV
|
TGTCAGGCGTGGGACAGCAGCACCGTGGTATTC
|
33.0
|
CQAWDSSTVVF
|
11.0
|
439.666
| null |
71.827
|
94S281M249S4N
| null |
376S1N37M211S
|
3.2319999999999997e-125
| null |
1.453e-16
|
100.0
| null |
100.0
|
95
|
375
|
1
|
281
| null | null | null | null |
377
|
413
|
2
|
38
|
95
|
169
|
170
|
187
|
188
|
238
|
239
|
247
|
248
|
355
|
383.0
|
412.0
|
356.0
|
382.0
|
C
|
1
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'E', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'D'}, 'cdrl1': {'27 ': 'K', '28 ': 'L', '29 ': 'G', '36 ': 'D', '37 ': 'K', '38 ': 'Y'}, 'fwl2': {'39 ': 'A', '40 ': 'C', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'S', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'Q', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'N', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'T', '95 ': 'Q', '96 ': 'A', '97 ': 'M', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'A', '107 ': 'W', '108 ': 'D', '109 ': 'S', '114 ': 'S', '115 ': 'T', '116 ': 'V', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACCTGTCTGTTTGT-1_contig_2
|
AGCTCTGGGAGAGGAGCCCCAGCCTTGGGATTCCCAAGTGTTTTCATTCAGTGATCAGGACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGATTTTCCTTGCTGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGATGTGCAGCAGCAGCTGGTGGGCCCCCTCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-15*01
|
IGHD6-13*01
|
IGHJ6*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGATGTGCAGCAGCAGCTGGTGGGCCCCCTCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGANNNNNAGCAGCAGCTGGTNNNNNNNNNCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTDVQQQLVGPLYYYYGMDVWGQGTTVTVSS
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTXXXQQLVXXXYYYYGMDVWGQGTTVTVSS
|
1
|
302
|
308.0
|
320.0
|
330
|
387
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTT
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTT
|
AGCAGCAGCTGGT
|
QQLV
|
AGCAGCAGCTGGT
|
QQLV
|
CTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
CTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVKPGGSLRLSCAAS
|
GGATTCACTTTCAGTAACGCCTGG
|
GFTFSNAW
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGT
|
MSWVRQAPGKGLEWVGR
|
ATTAAAAGCAAAACTGATGGTGGGACAACA
|
IKSKTDGGTT
|
GACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGT
|
DYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
ACCACAGATGTGCAGCAGCAGCTGGTGGGCCCCCTCTACTACTACTACGGTATGGACGTC
|
TTDVQQQLVGPLYYYYGMDV
|
TGTACCACAGATGTGCAGCAGCAGCTGGTGGGCCCCCTCTACTACTACTACGGTATGGACGTCTGG
|
66.0
|
CTTDVQQQLVGPLYYYYGMDVW
|
22.0
|
472.386
|
25.682
|
112.203
|
137S302M157S
|
444S6N13M139S2N
|
466S4N58M72S
|
4.3519999999999996e-135
|
0.004963
|
9.717999999999999e-29
|
100.0
|
100.0
|
100.0
|
138
|
439
|
1
|
302
|
445.0
|
457.0
|
7.0
|
19.0
|
467
|
524
|
5
|
62
|
138
|
212
|
213
|
236
|
237
|
287
|
288
|
317
|
318
|
431
|
492.0
|
524.0
|
432.0
|
491.0
|
TGTGC
|
5
|
GGGCCCCCT
|
9.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'N', '37 ': 'A', '38 ': 'W'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'K', '58 ': 'S', '59 ': 'K', '60 ': 'T', '61 ': 'D', '62 ': 'G', '63 ': 'G', '64 ': 'T', '65 ': 'T'}, 'fwh3': {'66 ': 'D', '67 ': 'Y', '68 ': 'A', '69 ': 'A', '70 ': 'P', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'D', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'K', '96 ': 'T', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'T', '106 ': 'T', '107 ': 'D', '108 ': 'V', '109 ': 'Q', '110 ': 'Q', '111 ': 'Q', '111A': 'L', '111B': 'V', '111C': 'G', '112D': 'P', '112C': 'L', '112B': 'Y', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACCTGTCTGTTTGT-1_contig_1
|
GATCAGGACTCCTCAGTTCACCTTCTCACAATGAGGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCTCTGGGTCTCTGGATCCAGTGGGGATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCGCACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV2-28*01
| null |
IGKJ2*01
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCGCACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCNNACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTPHTFGQGTKLEIK
|
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTPXTFGQGTKLEIK
|
1
|
299
| null | null |
302
|
337
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCC
|
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTP
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCC
|
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTP
| null | null | null | null |
ACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
TFGQGTKLEIK
|
ACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
TFGQGTKLEIK
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGT
|
DIVMTQSPLSLPVTPGEPASISCRSS
|
CAGAGCCTCCTGCATAGTAATGGATACAACTAT
|
QSLLHSNGYNY
|
TTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTAT
|
LDWYLQKPGQSPQLLIY
|
TTGGGTTCT
|
LGS
|
AATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGC
|
NRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC
|
TTTGGCCAGGGGACCAAGCTGGAGATCAAA
|
FGQGTKLEIK
|
ATGCAAGCTCTACAAACTCCGCACACT
|
MQALQTPHT
|
TGCATGCAAGCTCTACAAACTCCGCACACTTTT
|
33.0
|
CMQALQTPHTF
|
11.0
|
467.712
| null |
69.904
|
90S299M174S3N
| null |
391S3N36M136S
|
1.052e-133
| null |
4.962e-16
|
100.0
| null |
100.0
|
91
|
389
|
1
|
299
| null | null | null | null |
392
|
427
|
4
|
39
|
91
|
168
|
169
|
201
|
202
|
252
|
253
|
261
|
262
|
369
|
397.0
|
426.0
|
370.0
|
396.0
|
GC
|
2
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'L', '10 ': 'S', '11 ': 'L', '12 ': 'P', '13 ': 'V', '14 ': 'T', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'P', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'S', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'L', '30 ': 'L', '31 ': 'H', '32 ': 'S', '34 ': 'N', '35 ': 'G', '36 ': 'Y', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'D', '41 ': 'W', '42 ': 'Y', '43 ': 'L', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'S', '50 ': 'P', '51 ': 'Q', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'L', '57 ': 'G', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'A', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'K', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'V', '95 ': 'E', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'V', '100 ': 'G', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'M', '106 ': 'Q', '107 ': 'A', '108 ': 'L', '109 ': 'Q', '114 ': 'T', '115 ': 'P', '116 ': 'H', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGAGAAACCGC-1_contig_2
|
TGGGGACTCAACAACCACATCTGTCCTCTAGAGAAAACCCTGTGAGCACAGCTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCTACAAGTGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGGGGGTGTACTCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-8*01
|
IGHD2-8*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGGGGGTGTACTCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGGGGTGTACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARGVYSWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARGVYYWGQGTLVTVSS
|
1
|
296
|
297.0
|
301.0
|
302
|
340
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGGG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARG
|
GGTGT
|
V
|
GGTGT
|
V
|
ACTCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
SWGQGTLVTVSS
|
ACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCAGTTATGAT
|
GYTFTSYD
|
ATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGG
|
INWVRQATGQGLEWMGW
|
ATGAACCCTAACAGTGGTAACACA
|
MNPNSGNT
|
GGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
GYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGGGGGGTGTACTCC
|
ARGVYS
|
TGTGCGAGGGGGGTGTACTCCTGG
|
24.0
|
CARGVYSW
|
8.0
|
459.921
|
10.301
|
69.904
|
117S296M115S
|
413S16N5M110S10N
|
418S9N39M71S
|
2.178e-131
|
187.3
|
4.647e-16
|
99.662
|
100.0
|
97.436
|
118
|
413
|
1
|
296
|
414.0
|
418.0
|
17.0
|
21.0
|
419
|
457
|
10
|
48
|
118
|
192
|
193
|
216
|
217
|
267
|
268
|
291
|
292
|
405
|
424.0
|
456.0
|
406.0
|
423.0
| null |
0
| null |
0.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'S', '37 ': 'Y', '38 ': 'D'}, 'fwh2': {'39 ': 'I', '40 ': 'N', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'T', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'M', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'N', '65 ': 'T'}, 'fwh3': {'66 ': 'G', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'N', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '115 ': 'V', '116 ': 'Y', '117 ': 'S'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGAGAAACCGC-1_contig_1
|
GGAGGAGTCAGACCCACTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCCCAGGTGCCAGATGTGCCATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTACAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGCACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAAGATTACAATTACCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-6*01
| null |
IGKJ2*01
|
GCCATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTACAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGCACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAAGATTACAATTACCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
GCCATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTACAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGCACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAAGATTACAATTACCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
AIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQDYNYPYTFGQGTKLEIK
|
AIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQDYNYPYTFGQGTKLEIK
|
1
|
284
| null | null |
285
|
322
|
GCCATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTACAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGCACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAAGATTACAATTACCC
|
AIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQDYNYP
|
GCCATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTACAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGCACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAAGATTACAATTACCC
|
AIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQDYNYP
| null | null | null | null |
GTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
GTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
GCCATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGT
|
AIQMTQSPSSLSASVGDRVTITCRAS
|
CAGGGCATTAGAAATGAT
|
QGIRND
|
TTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LGWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTACAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGCACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTTGGCCAGGGGACCAAGCTGGAGATCAAA
|
FGQGTKLEIK
|
CTACAAGATTACAATTACCCGTACACT
|
LQDYNYPYT
|
TGTCTACAAGATTACAATTACCCGTACACTTTT
|
33.0
|
CLQDYNYPYTF
|
11.0
|
444.34
| null |
73.749
|
95S284M174S3N
| null |
379S1N38M136S
|
1.121e-126
| null |
3.39e-17
|
100.0
| null |
100.0
|
96
|
379
|
1
|
284
| null | null | null | null |
380
|
417
|
2
|
39
|
96
|
173
|
174
|
191
|
192
|
242
|
243
|
251
|
252
|
359
|
387.0
|
416.0
|
360.0
|
386.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'A', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'G', '29 ': 'I', '36 ': 'R', '37 ': 'N', '38 ': 'D'}, 'fwk2': {'39 ': 'L', '40 ': 'G', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'L', '106 ': 'Q', '107 ': 'D', '108 ': 'Y', '109 ': 'N', '114 ': 'Y', '115 ': 'P', '116 ': 'Y', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGAGGGCTTCC-1_contig_2
|
AGCTCTGGGAGAGGAGCCCAGCACTGGGATTCCGAGGTGTTTCCATTCAGTGATCTGCACTGAACACAGAGGACTCGCCATGGAGTTTGGGCTGAGCTGGGTTTTCCTTGTTGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGAGGCGTATAGCAGCAGCTGGGATGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-66*02
|
IGHD6-13*01
|
IGHJ3*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGAGGCGTATAGCAGCAGCTGGGATGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGANNNNNGTATAGCAGCAGCTGGNNTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
EVQLVESGGGLVQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREAYSSSWDDAFDIWGQGTMVTVSS
|
EVQLVESGGGLVQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARXXYSSSWXDAFDIWGQGTMVTVSS
|
1
|
291
|
297.0
|
312.0
|
315
|
364
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
GTATAGCAGCAGCTGG
|
YSSSW
|
GTATAGCAGCAGCTGG
|
YSSSW
|
TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGGSLRLSCAAS
|
GGATTCACCGTCAGTAGCAACTAC
|
GFTVSSNY
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTT
|
MSWVRQAPGKGLEWVSV
|
ATTTATAGCGGTGGTAGCACA
|
IYSGGST
|
TACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
GCGAGAGAGGCGTATAGCAGCAGCTGGGATGATGCTTTTGATATC
|
AREAYSSSWDDAFDI
|
TGTGCGAGAGAGGCGTATAGCAGCAGCTGGGATGATGCTTTTGATATCTGG
|
51.0
|
CAREAYSSSWDDAFDIW
|
17.0
|
455.247
|
31.45
|
96.822
|
136S291M144S
|
432S2N16M123S3N
|
450S50M71S
|
6.039e-130
|
8.718e-05
|
3.9709999999999996e-24
|
100.0
|
100.0
|
100.0
|
137
|
427
|
1
|
291
|
433.0
|
448.0
|
3.0
|
18.0
|
451
|
500
|
1
|
50
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
307
|
308
|
421
|
467.0
|
499.0
|
422.0
|
466.0
|
GAGGC
|
5
|
GA
|
2.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'V', '35 ': 'S', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'S', '59 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'E', '108 ': 'A', '109 ': 'Y', '110 ': 'S', '111 ': 'S', '111A': 'S', '112A': 'W', '112 ': 'D', '113 ': 'D', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGAGGGCTTCC-1_contig_1
|
AGCTGTGGGCTCAGAAGCAGAGTTCTGGGGTGTCTCCACCATGGCCTGGACCCCTCTCTGGCTCACTCTCCTCACTCTTTGCATAGGTTCTGTGGTTTCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCTAGGAGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-19*01
| null |
IGLJ2*01
|
TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCTAGGAGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCTNNNNGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SSELTQDPAVSVALGQTVRITCQGDSLRSYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSGNTASLTITGAQAEDEADYYCNSRDSSGNHLGVFGGGTKLTVL
|
SSELTQDPAVSVALGQTVRITCQGDSLRSYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSGNTASLTITGAQAEDEADYYCNSRDSSGNHLXVFGGGTKLTVL
|
1
|
290
| null | null |
295
|
328
|
TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCT
|
SSELTQDPAVSVALGQTVRITCQGDSLRSYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSGNTASLTITGAQAEDEADYYCNSRDSSGNHL
|
TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCT
|
SSELTQDPAVSVALGQTVRITCQGDSLRSYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSGNTASLTITGAQAEDEADYYCNSRDSSGNHL
| null | null | null | null |
GTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
GTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGAC
|
SSELTQDPAVSVALGQTVRITCQGD
|
AGCCTCAGAAGCTATTAT
|
SLRSYY
|
GCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTAT
|
ASWYQQKPGQAPVLVIY
|
GGTAAAAAC
|
GKN
|
AACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGT
|
NRPSGIPDRFSGSSSGNTASLTITGAQAEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
AACTCCCGGGACAGCAGTGGTAACCATCTAGGAGTA
|
NSRDSSGNHLGV
|
TGTAACTCCCGGGACAGCAGTGGTAACCATCTAGGAGTATTC
|
42.0
|
CNSRDSSGNHLGVF
|
14.0
|
453.689
| null |
66.059
|
97S290M249S
| null |
391S4N34M211S
|
1.98e-129
| null |
8.075e-15
|
100.0
| null |
100.0
|
98
|
387
|
1
|
290
| null | null | null | null |
392
|
425
|
5
|
38
|
98
|
172
|
173
|
190
|
191
|
241
|
242
|
250
|
251
|
358
|
395.0
|
424.0
|
359.0
|
394.0
|
AGGA
|
4
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'S', '3 ': 'E', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'D', '8 ': 'P', '9 ': 'A', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'A', '15 ': 'L', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'V', '20 ': 'R', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'Q', '25 ': 'G', '26 ': 'D'}, 'cdrl1': {'27 ': 'S', '28 ': 'L', '29 ': 'R', '36 ': 'S', '37 ': 'Y', '38 ': 'Y'}, 'fwl2': {'39 ': 'A', '40 ': 'S', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'G', '57 ': 'K', '65 ': 'N'}, 'fwl3': {'66 ': 'N', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'S', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'T', '93 ': 'G', '94 ': 'A', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'N', '106 ': 'S', '107 ': 'R', '108 ': 'D', '109 ': 'S', '110 ': 'S', '112 ': 'G', '113 ': 'N', '114 ': 'H', '115 ': 'L', '116 ': 'G', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGAGGGTGTGT-1_contig_2
|
ACTTTCTGAGAGTCCTGGACCTCCTGTGCAAGAACATGAAACATCTGTGGTTCTTCCTCCTCCTGGTGGCAGCTCCCAGATGGGTCCTGTCCCAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTAGTTACTACTGGAGCTGGATCCGGCAGCCCGCCGGGAAGGGACTGGAGTGGATTGGGCGTATCTATACCAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGAGGTCGTGGGATGGCTACAATAGTTGATCACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-61*02
|
IGHD5-12*01
|
IGHJ4*02
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTAGTTACTACTGGAGCTGGATCCGGCAGCCCGCCGGGAAGGGACTGGAGTGGATTGGGCGTATCTATACCAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGAGGTCGTGGGATGGCTACAATAGTTGATCACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTAGTTACTACTGGAGCTGGATCCGGCAGCCCGCCGGGAAGGGACTGGAGTGGATTGGGCGTATCTATACCAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGAGNNNNNNNNNTGGCTACNNNNNNNNNNNACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGSYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARGRGMATIVDHWGQGTLVTVSS
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGSYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARXXXXATXXXXWGQGTLVTVSS
|
1
|
298
|
308.0
|
314.0
|
326
|
361
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTAGTTACTACTGGAGCTGGATCCGGCAGCCCGCCGGGAAGGGACTGGAGTGGATTGGGCGTATCTATACCAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGSYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTAGTTACTACTGGAGCTGGATCCGGCAGCCCGCCGGGAAGGGACTGGAGTGGATTGGGCGTATCTATACCAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGSYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
TGGCTAC
|
AT
|
TGGCTAC
|
AT
|
ACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WGQGTLVTVSS
|
ACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WGQGTLVTVSS
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QVQLQESGPGLVKPSQTLSLTCTVS
|
GGTGGCTCCATCAGCAGTGGTAGTTACTAC
|
GGSISSGSYY
|
TGGAGCTGGATCCGGCAGCCCGCCGGGAAGGGACTGGAGTGGATTGGGCGT
|
WSWIRQPAGKGLEWIGR
|
ATCTATACCAGTGGGAGCACC
|
IYTSGST
|
AACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGT
|
NYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGGTCGTGGGATGGCTACAATAGTTGATCAC
|
ARGRGMATIVDH
|
TGTGCGAGAGGTCGTGGGATGGCTACAATAGTTGATCACTGG
|
42.0
|
CARGRGMATIVDHW
|
14.0
|
466.153
|
14.146
|
69.904
|
92S298M134S1N
|
399S10N7M118S6N
|
417S12N36M71S
|
2.873e-133
|
12.93
|
4.611e-16
|
100.0
|
100.0
|
100.0
|
93
|
390
|
1
|
298
|
400.0
|
406.0
|
11.0
|
17.0
|
418
|
453
|
13
|
48
|
93
|
167
|
168
|
197
|
198
|
248
|
249
|
269
|
270
|
383
|
420.0
|
452.0
|
384.0
|
419.0
|
GTCGTGGGA
|
9
|
AATAGTTGATC
|
11.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'Q', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '34 ': 'S', '35 ': 'G', '36 ': 'S', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'S', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'A', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'T', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'R', '109 ': 'G', '110 ': 'M', '112 ': 'A', '113 ': 'T', '114 ': 'I', '115 ': 'V', '116 ': 'D', '117 ': 'H'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGAGGGTGTGT-1_contig_1
|
AGGAGTCAGACCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCCCAGGTGCCAAATGTGACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACACCAGGGTTTCGGCCCTGGGACCAAAGTGGATATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-5*03
| null |
IGKJ3*01
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACACCAGGGTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACANNNNNNTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQHQGFGPGTKVDIK
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQXXXFGPGTKVDIK
|
1
|
269
| null | null |
276
|
307
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACA
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQ
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACA
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQ
| null | null | null | null |
TTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
FGPGTKVDIK
|
TTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
FGPGTKVDIK
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGT
|
DIQMTQSPSTLSASVGDRVTITCRAS
|
CAGAGTATTAGTAGCTGG
|
QSISSW
|
TTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LAWYQQKPGKAPKLLIY
|
AAGGCGTCT
|
KAS
|
AGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGC
|
SLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYC
|
TTCGGCCCTGGGACCAAAGTGGATATCAAA
|
FGPGTKVDIK
|
CAACACCAGGGT
|
QHQG
|
TGCCAACACCAGGGTTTC
|
18.0
|
CQHQGF
|
6.0
|
420.968
| null |
62.213
|
93S269M174S18N
| null |
368S6N32M136S
|
1.177e-119
| null |
9.75e-14
|
100.0
| null |
100.0
|
94
|
362
|
1
|
269
| null | null | null | null |
369
|
400
|
7
|
38
|
94
|
171
|
172
|
189
|
190
|
240
|
241
|
249
|
250
|
357
|
370.0
|
399.0
|
358.0
|
369.0
|
CCAGGG
|
6
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'W'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'K', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'E', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'D', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'H', '116 ': 'Q', '117 ': 'G'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'P', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'D', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGAGTTAAGTG-1_contig_1
|
TGGGATCACTCAACAACCACATCTGTCCTCTAGAGAAAACCCTGTGAGCACAGCTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCTACAAGTGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGGAAGGGCGGGCGGATACAGCTATGGTTACTGGGGCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-8*01
|
IGHD5-18*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGGAAGGGCGGGCGGATACAGCTATGGTTACTGGGGCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGGNNNNNNNNNNGGATACAGCTATGGTTACNNNNNCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARGRAGGYSYGYWGYWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARGXXXGYSYGYXXYWGQGTLVTVSS
|
1
|
296
|
307.0
|
324.0
|
330
|
367
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARG
|
GGATACAGCTATGGTTAC
|
GYSYGY
|
GGATACAGCTATGGTTAC
|
GYSYGY
|
CTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YWGQGTLVTVSS
|
CTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCAGTTATGAT
|
GYTFTSYD
|
ATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGG
|
INWVRQATGQGLEWMGW
|
ATGAACCCTAACAGTGGTAACACA
|
MNPNSGNT
|
GGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
GYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGGAAGGGCGGGCGGATACAGCTATGGTTACTGGGGCTAC
|
ARGRAGGYSYGYWGY
|
TGTGCGAGAGGAAGGGCGGGCGGATACAGCTATGGTTACTGGGGCTACTGG
|
51.0
|
CARGRAGGYSYGYWGYW
|
17.0
|
463.037
|
35.296
|
73.749
|
119S296M142S
|
425S2N18M114S
|
448S10N38M71S
|
2.657e-132
|
5.914e-06
|
3.415e-17
|
100.0
|
100.0
|
100.0
|
120
|
415
|
1
|
296
|
426.0
|
443.0
|
3.0
|
20.0
|
449
|
486
|
11
|
48
|
120
|
194
|
195
|
218
|
219
|
269
|
270
|
293
|
294
|
407
|
453.0
|
485.0
|
408.0
|
452.0
|
AAGGGCGGGC
|
10
|
TGGGG
|
5.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'S', '37 ': 'Y', '38 ': 'D'}, 'fwh2': {'39 ': 'I', '40 ': 'N', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'T', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'M', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'N', '65 ': 'T'}, 'fwh3': {'66 ': 'G', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'N', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'R', '109 ': 'A', '110 ': 'G', '111 ': 'G', '111A': 'Y', '112A': 'S', '112 ': 'Y', '113 ': 'G', '114 ': 'Y', '115 ': 'W', '116 ': 'G', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGAGTTAAGTG-1_contig_2
|
GAGCTACAACAGGCAGGCAGGGGCAGCAAGATGGTGTTGCAGACCCAGGTCTTCATTTCTCTGTTGCTCTGGATCTCTGGTGCCTACGGGGACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCTGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV4-1*01
| null |
IGKJ2*01
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCTGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCTGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPLYTFGQGTKLEIK
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPLYTFGQGTKLEIK
|
1
|
304
| null | null |
305
|
343
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTP
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTP
| null | null | null | null |
TGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
TGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGC
|
DIVMTQSPDSLAVSLGERATINCKSS
|
CAGAGTGTTTTATACAGCTCCAACAATAAGAACTAC
|
QSVLYSSNNKNY
|
TTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTAC
|
LAWYQQKPGQPPKLLIY
|
TGGGCATCT
|
WAS
|
ACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGT
|
TRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYC
|
TTTGGCCAGGGGACCAAGCTGGAGATCAAA
|
FGQGTKLEIK
|
CAGCAATATTATAGTACTCCTCTGTACACT
|
QQYYSTPLYT
|
TGTCAGCAATATTATAGTACTCCTCTGTACACTTTT
|
36.0
|
CQQYYSTPLYTF
|
12.0
|
475.502
| null |
75.672
|
90S304M175S1N
| null |
394S39M136S
|
4.8069999999999996e-136
| null |
9.204e-18
|
100.0
| null |
100.0
|
91
|
394
|
1
|
304
| null | null | null | null |
395
|
433
|
1
|
39
|
91
|
168
|
169
|
204
|
205
|
255
|
256
|
264
|
265
|
372
|
403.0
|
432.0
|
373.0
|
402.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'D', '10 ': 'S', '11 ': 'L', '12 ': 'A', '13 ': 'V', '14 ': 'S', '15 ': 'L', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'I', '22 ': 'N', '23 ': 'C', '24 ': 'K', '25 ': 'S', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '30 ': 'L', '31 ': 'Y', '32 ': 'S', '33 ': 'S', '34 ': 'N', '35 ': 'N', '36 ': 'K', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'P', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'W', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'R', '68 ': 'E', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'V', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'Y', '109 ': 'S', '113 ': 'T', '114 ': 'P', '115 ': 'L', '116 ': 'Y', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGCAAAGGTGC-1_contig_1
|
GGGAGCATCACCCAGCAACCACATCTGTCCTCTAGAGAATCCCCTGAGAGCTCCGTTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCCACAGGAGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGGGGGAACTGGAACTCACAGCCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-2*06
|
IGHD1-7*01
|
IGHJ5*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGGGGGAACTGGAACTCACAGCCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGNNNNAACTGGAACTNNNNNCCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARGGTGTHSPWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARXXTGTXXPWGQGTLVTVSS
|
1
|
295
|
300.0
|
309.0
|
315
|
352
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
AACTGGAACT
|
TGT
|
AACTGGAACT
|
TGT
|
CCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
PWGQGTLVTVSS
|
CCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
PWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCGGCTACTAT
|
GYTFTGYY
|
ATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGG
|
MHWVRQAPGQGLEWMGR
|
ATCAACCCTAACAGTGGTGGCACA
|
INPNSGGT
|
AACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGGGGGAACTGGAACTCACAGCCCC
|
ARGGTGTHSP
|
TGTGCGAGAGGGGGAACTGGAACTCACAGCCCCTGG
|
36.0
|
CARGGTGTHSPW
|
12.0
|
461.479
|
19.914
|
73.749
|
121S295M128S1N
|
420S5N10M114S2N
|
435S13N38M71S
|
7.632e-132
|
0.2464
|
3.333e-17
|
100.0
|
100.0
|
100.0
|
122
|
416
|
1
|
295
|
421.0
|
430.0
|
6.0
|
15.0
|
436
|
473
|
14
|
51
|
122
|
196
|
197
|
220
|
221
|
271
|
272
|
295
|
296
|
409
|
440.0
|
472.0
|
410.0
|
439.0
|
GGGG
|
4
|
CACAG
|
5.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'G', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'G', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'R', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'D', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'G', '109 ': 'T', '113 ': 'G', '114 ': 'T', '115 ': 'H', '116 ': 'S', '117 ': 'P'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGCAAAGGTGC-1_contig_2
|
GAGGAATCAGTCCCACTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGTTCCCAGGTGCCAGGTGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCGCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAGCATAATAGTTACGTGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-17*01
| null |
IGKJ1*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCGCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAGCATAATAGTTACGTGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCGCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAGCATAATAGTTACNNGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKRLIYAASSLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCLQHNSYVWTFGQGTKVEIK
|
DIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKRLIYAASSLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCLQHNSYXWTFGQGTKVEIK
|
1
|
282
| null | null |
285
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCGCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAGCATAATAGTTAC
|
DIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKRLIYAASSLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCLQHNSY
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGAAATGATTTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCGCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCTACAGCATAATAGTTAC
|
DIQMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPKRLIYAASSLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCLQHNSY
| null | null | null | null |
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGT
|
DIQMTQSPSSLSASVGDRVTITCRAS
|
CAGGGCATTAGAAATGAT
|
QGIRND
|
TTAGGCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCGCCTGATCTAT
|
LGWYQQKPGKAPKRLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGT
|
SLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CTACAGCATAATAGTTACGTGTGGACG
|
LQHNSYVWT
|
TGTCTACAGCATAATAGTTACGTGTGGACGTTC
|
33.0
|
CLQHNSYVWTF
|
11.0
|
441.224
| null |
73.749
|
94S282M176S5N
| null |
378S38M136S
|
9.701e-126
| null |
3.383e-17
|
100.0
| null |
100.0
|
95
|
376
|
1
|
282
| null | null | null | null |
379
|
416
|
1
|
38
|
95
|
172
|
173
|
190
|
191
|
241
|
242
|
250
|
251
|
358
|
386.0
|
415.0
|
359.0
|
385.0
|
GT
|
2
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'G', '29 ': 'I', '36 ': 'R', '37 ': 'N', '38 ': 'D'}, 'fwk2': {'39 ': 'L', '40 ': 'G', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'R', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'L', '106 ': 'Q', '107 ': 'H', '108 ': 'N', '109 ': 'S', '114 ': 'Y', '115 ': 'V', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGCAAGAGGCT-1_contig_2
|
AGCTCTGAGAGAGGAGCCCAGCCCTGGGATTTTCAGGTGTTTTCATTTGGTGATCAGGACTGAACAGAGAGAACTCACCATGGAGTTTGGGCTGAGCTGGCTTTTTCTTGTGGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGATCGGATCCCAATCCGTGGATACAGCTATGGTTACTTTGGCTACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-23*01
|
IGHD5-18*01
|
IGHJ4*02
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGATCGGATCCCAATCCGTGGATACAGCTATGGTTACTTTGGCTACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGANNNNNNNNNNNNNNGTGGATACAGCTATGGTTACNNNNNNNACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDRIPIRGYSYGYFGYYFDYWGQGTLVTVSS
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKXXXXXXGYSYGYXXXYFDYWGQGTLVTVSS
|
1
|
296
|
311.0
|
330.0
|
338
|
385
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
GTGGATACAGCTATGGTTAC
|
GYSYGY
|
GTGGATACAGCTATGGTTAC
|
GYSYGY
|
ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YFDYWGQGTLVTVSS
|
ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YFDYWGQGTLVTVSS
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLLESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTTAGCAGCTATGCC
|
GFTFSSYA
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCT
|
MSWVRQAPGKGLEWVSA
|
ATTAGTGGTAGTGGTGGTAGCACA
|
ISGSGGST
|
TACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAAAGATCGGATCCCAATCCGTGGATACAGCTATGGTTACTTTGGCTACTACTTTGACTAC
|
AKDRIPIRGYSYGYFGYYFDY
|
TGTGCGAAAGATCGGATCCCAATCCGTGGATACAGCTATGGTTACTTTGGCTACTACTTTGACTACTGG
|
69.0
|
CAKDRIPIRGYSYGYFGYYFDYW
|
23.0
|
463.037
|
39.141
|
92.976
|
136S296M160S
|
446S20M126S
|
473S48M71S
|
2.817e-132
|
4.378e-07
|
5.922e-23
|
100.0
|
100.0
|
100.0
|
137
|
432
|
1
|
296
|
447.0
|
466.0
|
1.0
|
20.0
|
474
|
521
|
1
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
488.0
|
520.0
|
425.0
|
487.0
|
TCGGATCCCAATCC
|
14
|
TTTGGCT
|
7.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'L', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'A'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'G', '59 ': 'S', '62 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'D', '108 ': 'R', '109 ': 'I', '110 ': 'P', '111 ': 'I', '111A': 'R', '111B': 'G', '111C': 'Y', '111D': 'S', '112D': 'Y', '112C': 'G', '112B': 'Y', '112A': 'F', '112 ': 'G', '113 ': 'Y', '114 ': 'Y', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGCAAGAGGCT-1_contig_1
|
GGGGAGGAGTCAGTCCCAACCAGGACACAGCATGGACATGAGGGTCCCTGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCTCAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCGTGGACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-33*01
| null |
IGKJ2*02
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCGTGGACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCGTGCACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPWTFGQGTKLEIK
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPCTFGQGTKLEIK
|
1
|
284
| null | null |
285
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLP
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLP
| null | null | null | null |
GTGGACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
WTFGQGTKLEIK
|
GTGCACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
CTFGQGTKLEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGT
|
DIQMTQSPSSLSASVGDRVTITCQAS
|
CAGGACATTAGCAACTAT
|
QDISNY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAC
|
LNWYQQKPGKAPKLLIY
|
GATGCATCC
|
DAS
|
AATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGT
|
NLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYC
|
TTTGGCCAGGGGACCAAGCTGGAGATCAAA
|
FGQGTKLEIK
|
CAACAGTATGATAATCTCCCGTGGACT
|
QQYDNLPWT
|
TGTCAACAGTATGATAATCTCCCGTGGACTTTT
|
33.0
|
CQQYDNLPWTF
|
11.0
|
444.34
| null |
67.981
|
97S284M174S3N
| null |
381S38M136S
|
1.125e-126
| null |
1.854e-15
|
100.0
| null |
97.368
|
98
|
381
|
1
|
284
| null | null | null | null |
382
|
419
|
1
|
38
|
98
|
175
|
176
|
193
|
194
|
244
|
245
|
253
|
254
|
361
|
389.0
|
418.0
|
362.0
|
388.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'Q', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'D', '29 ': 'I', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'L', '68 ': 'E', '69 ': 'T', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'F', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'I', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'D', '109 ': 'N', '114 ': 'L', '115 ': 'P', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGCAATACGCT-1_contig_2
|
CGAGCCCAGCACTGGAAGTCGCCGGTGTTTCCATTCGGTGATCATCACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTCCTCGTTGCTCTTTTAAGAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGGGCAGGATACAGCTATGGTACCCATCCTCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-30-3*01
|
IGHD5-18*01
|
IGHJ6*02
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGGGCAGGATACAGCTATGGTACCCATCCTCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGNNNNGGATACAGCTATGGTNNNNNNNNNCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGQDTAMVPILYYYYGMDVWGQGTTVTVSS
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARXXDTAMVXXXYYYYGMDVWGQGTTVTVSS
|
1
|
295
|
300.0
|
314.0
|
324
|
381
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
GGATACAGCTATGGT
|
DTAMV
|
GGATACAGCTATGGT
|
DTAMV
|
CTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
CTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
QVQLVESGGGVVQPGRSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATGCT
|
GFTFSSYA
|
ATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTT
|
MHWVRQAPGKGLEWVAV
|
ATATCATATGATGGAAGCAATAAA
|
ISYDGSNK
|
TACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAGAGGGCAGGATACAGCTATGGTACCCATCCTCTACTACTACTACGGTATGGACGTC
|
ARGQDTAMVPILYYYYGMDV
|
TGTGCGAGAGGGCAGGATACAGCTATGGTACCCATCCTCTACTACTACTACGGTATGGACGTCTGG
|
66.0
|
CARGQDTAMVPILYYYYGMDVW
|
22.0
|
461.479
|
29.528
|
112.203
|
124S295M158S1N
|
423S2N15M139S3N
|
447S4N58M72S
|
8.075e-132
|
0.0003341
|
9.401999999999999e-29
|
100.0
|
100.0
|
100.0
|
125
|
419
|
1
|
295
|
424.0
|
438.0
|
3.0
|
17.0
|
448
|
505
|
5
|
62
|
125
|
199
|
200
|
223
|
224
|
274
|
275
|
298
|
299
|
412
|
473.0
|
505.0
|
413.0
|
472.0
|
GGCA
|
4
|
ACCCATCCT
|
9.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'V', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'Y', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'N', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'Q', '109 ': 'D', '110 ': 'T', '111 ': 'A', '111A': 'M', '111B': 'V', '111C': 'P', '112D': 'I', '112C': 'L', '112B': 'Y', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGCAATACGCT-1_contig_1
|
AGCTTCAGCTGTGGTAGAGAAGACAGGATTCAGGACAATCTCCAGCATGGCCGGCTTCCCTCTCCTCCTCACCCTCCTCACTCACTGTGCAGGGTCCTGGGCCCAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGGTCAAGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV1-47*01
| null |
IGLJ3*02
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGGTCAAGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGGTCNNGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSGQVFGGGTKLTVL
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSGXVFGGGTKLTVL
|
1
|
295
| null | null |
298
|
331
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGGTC
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSG
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGGTC
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSG
| null | null | null | null |
GTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
GTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGC
|
QSVLTQPPSASGTPGQRVTISCSGS
|
AGCTCCAACATCGGAAGTAATTAT
|
SSNIGSNY
|
GTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTAT
|
VYWYQQLPGTAPKLLIY
|
AGGAATAAT
|
RNN
|
CAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGT
|
QRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
GCAGCATGGGATGACAGCCTGAGTGGTCAAGTG
|
AAWDDSLSGQV
|
TGTGCAGCATGGGATGACAGCCTGAGTGGTCAAGTGTTC
|
39.0
|
CAAWDDSLSGQVF
|
13.0
|
461.479
| null |
66.059
|
103S295M247S1N
| null |
400S4N34M211S
|
9.077e-132
| null |
8.192e-15
|
100.0
| null |
100.0
|
104
|
398
|
1
|
295
| null | null | null | null |
401
|
434
|
5
|
38
|
104
|
178
|
179
|
202
|
203
|
253
|
254
|
262
|
263
|
370
|
404.0
|
433.0
|
371.0
|
403.0
|
AA
|
2
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'A', '12 ': 'S', '13 ': 'G', '14 ': 'T', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'S'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'N', '30 ': 'I', '35 ': 'G', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwl2': {'39 ': 'V', '40 ': 'Y', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'L', '46 ': 'P', '47 ': 'G', '48 ': 'T', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'R', '57 ': 'N', '65 ': 'N'}, 'fwl3': {'66 ': 'Q', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'S', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'A', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'A', '106 ': 'A', '107 ': 'W', '108 ': 'D', '109 ': 'D', '110 ': 'S', '113 ': 'L', '114 ': 'S', '115 ': 'G', '116 ': 'Q', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGCACGGTTTA-1_contig_2
|
TGGGGACCCAAAAACCACACCCCTCCTTGGGAGAATCCCCTAGATCACAGCTCCTCACCATGGACTGGACCTGGAGCATCCTTTTCTTGGTGGCAGCAGCAACAGGTGCCCACTCCCAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGGCGCGGTGACCTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-18*01
|
IGHD4-17*01
|
IGHJ6*02
|
CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGGCGCGGTGACCTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGNNNCGGTGACCTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGISWVRQAPGQGLEWMGWISAYNGNTNYAQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARGAVTYYGMDVWGQGTTVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGISWVRQAPGQGLEWMGWISAYNGNTNYAQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARXXVTYYGMDVWGQGTTVTVSS
|
1
|
295
|
299.0
|
305.0
|
306
|
357
|
CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGISWVRQAPGQGLEWMGWISAYNGNTNYAQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCAR
|
CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGISWVRQAPGQGLEWMGWISAYNGNTNYAQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCAR
|
CGGTGAC
|
VT
|
CGGTGAC
|
VT
|
CTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYGMDVWGQGTTVTVSS
|
CTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYGMDVWGQGTTVTVSS
|
CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGTTACACCTTTACCAGCTATGGT
|
GYTFTSYG
|
ATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGG
|
ISWVRQAPGQGLEWMGW
|
ATCAGCGCTTACAATGGTAACACA
|
ISAYNGNT
|
AACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGT
|
NYAQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAGAGGCGCGGTGACCTACTACGGTATGGACGTC
|
ARGAVTYYGMDV
|
TGTGCGAGAGGCGCGGTGACCTACTACGGTATGGACGTCTGG
|
42.0
|
CARGAVTYYGMDVW
|
14.0
|
461.479
|
14.146
|
100.667
|
116S295M134S1N
|
414S6N7M124S3N
|
421S10N52M72S
|
7.647e-132
|
13.46
|
2.634e-25
|
100.0
|
100.0
|
100.0
|
117
|
411
|
1
|
295
|
415.0
|
421.0
|
7.0
|
13.0
|
422
|
473
|
11
|
62
|
117
|
191
|
192
|
215
|
216
|
266
|
267
|
290
|
291
|
404
|
441.0
|
473.0
|
405.0
|
440.0
|
GCG
|
3
| null |
0.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'S', '37 ': 'Y', '38 ': 'G'}, 'fwh2': {'39 ': 'I', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'A', '59 ': 'Y', '62 ': 'N', '63 ': 'G', '64 ': 'N', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'L', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'T', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'T', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'R', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'D', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'A', '109 ': 'V', '110 ': 'T', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGCACGGTTTA-1_contig_1
|
AGGAGTCAGACCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCCCAGGTGCCAAATGTGACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-5*03
| null |
IGKJ1*01
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATNNGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYPWTFGQGTKVEIK
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYXWTFGQGTKVEIK
|
1
|
282
| null | null |
285
|
322
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTAT
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSY
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTAT
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSY
| null | null | null | null |
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGT
|
DIQMTQSPSTLSASVGDRVTITCRAS
|
CAGAGTATTAGTAGCTGG
|
QSISSW
|
TTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LAWYQQKPGKAPKLLIY
|
AAGGCGTCT
|
KAS
|
AGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGC
|
SLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAACAGTATAATAGTTATCCGTGGACG
|
QQYNSYPWT
|
TGCCAACAGTATAATAGTTATCCGTGGACGTTC
|
33.0
|
CQQYNSYPWTF
|
11.0
|
441.224
| null |
73.749
|
93S282M176S5N
| null |
377S38M136S
|
9.683e-126
| null |
3.377e-17
|
100.0
| null |
100.0
|
94
|
375
|
1
|
282
| null | null | null | null |
378
|
415
|
1
|
38
|
94
|
171
|
172
|
189
|
190
|
240
|
241
|
249
|
250
|
357
|
385.0
|
414.0
|
358.0
|
384.0
|
CC
|
2
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'W'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'K', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'E', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'D', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'N', '109 ': 'S', '114 ': 'Y', '115 ': 'P', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGCAGTAAGCG-1_contig_2
|
GGGGACTTTCTGAGAGTCCTGGACCTCCTGCACAAGAACATGAAACACCTGTGGTTCTTCCTCCTCCTGGTGGCAGCTCCCAGATGGGTCCTGTCTCAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGGCTCCATCAGCAGTAGTAACTGGTGGAGTTGGGTCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCTATCATAGTGGGAGCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACAAGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCGGACACGGCCGTGTATTACTGTGCGAGCTATTACTATGATAGTAGTGGTTACCGATTGGGTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-4*02
|
IGHD3-22*01
|
IGHJ3*02
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGGCTCCATCAGCAGTAGTAACTGGTGGAGTTGGGTCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCTATCATAGTGGGAGCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACAAGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCGGACACGGCCGTGTATTACTGTGCGAGCTATTACTATGATAGTAGTGGTTACCGATTGGGTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGGCTCCATCAGCAGTAGTAACTGGTGGAGTTGGGTCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCTATCATAGTGGGAGCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACAAGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCGGACACGGCCGTGTATTACTGTGCGAGNTATTACTATGATAGTAGTGGTTANNNNNNNNNTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
QVQLQESGPGLVKPSGTLSLTCAVSGGSISSSNWWSWVRQPPGKGLEWIGEIYHSGSTNYNPSLKSRVTISVDKSKNQFSLKLSSVTAADTAVYYCASYYYDSSGYRLGDAFDIWGQGTMVTVSS
|
QVQLQESGPGLVKPSGTLSLTCAVSGGSISSSNWWSWVRQPPGKGLEWIGEIYHSGSTNYNPSLKSRVTISVDKSKNQFSLKLSSVTAADTAVYYCAXYYYDSSGXXXXDAFDIWGQGTMVTVSS
|
1
|
293
|
295.0
|
317.0
|
327
|
376
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGGCTCCATCAGCAGTAGTAACTGGTGGAGTTGGGTCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCTATCATAGTGGGAGCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACAAGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCGGACACGGCCGTGTATTACTGTGCGAG
|
QVQLQESGPGLVKPSGTLSLTCAVSGGSISSSNWWSWVRQPPGKGLEWIGEIYHSGSTNYNPSLKSRVTISVDKSKNQFSLKLSSVTAADTAVYYCA
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGGCTCCATCAGCAGTAGTAACTGGTGGAGTTGGGTCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCTATCATAGTGGGAGCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACAAGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCGGACACGGCCGTGTATTACTGTGCGAG
|
QVQLQESGPGLVKPSGTLSLTCAVSGGSISSSNWWSWVRQPPGKGLEWIGEIYHSGSTNYNPSLKSRVTISVDKSKNQFSLKLSSVTAADTAVYYCA
|
TATTACTATGATAGTAGTGGTTA
|
YYYDSSG
|
TATTACTATGATAGTAGTGGTTA
|
YYYDSSG
|
TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCT
|
QVQLQESGPGLVKPSGTLSLTCAVS
|
GGTGGCTCCATCAGCAGTAGTAACTGG
|
GGSISSSNW
|
TGGAGTTGGGTCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAA
|
WSWVRQPPGKGLEWIGE
|
ATCTATCATAGTGGGAGCACC
|
IYHSGST
|
AACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACAAGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCGGACACGGCCGTGTATTACTGT
|
NYNPSLKSRVTISVDKSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
GCGAGCTATTACTATGATAGTAGTGGTTACCGATTGGGTGATGCTTTTGATATC
|
ASYYYDSSGYRLGDAFDI
|
TGTGCGAGCTATTACTATGATAGTAGTGGTTACCGATTGGGTGATGCTTTTGATATCTGG
|
60.0
|
CASYYYDSSGYRLGDAFDIW
|
20.0
|
458.363
|
44.909
|
96.822
|
96S293M154S3N
|
390S1N23M130S7N
|
422S50M71S
|
6.605000000000005e-131
|
7.357e-09
|
3.7719999999999996e-24
|
100.0
|
100.0
|
100.0
|
97
|
389
|
1
|
293
|
391.0
|
413.0
|
2.0
|
24.0
|
423
|
472
|
1
|
50
|
97
|
171
|
172
|
198
|
199
|
249
|
250
|
270
|
271
|
384
|
439.0
|
471.0
|
385.0
|
438.0
|
C
|
1
|
CCGATTGGG
|
9.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'G', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'A', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '35 ': 'S', '36 ': 'S', '37 ': 'N', '38 ': 'W'}, 'fwh2': {'39 ': 'W', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'E'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'H', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'K', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'S', '107 ': 'Y', '108 ': 'Y', '109 ': 'Y', '110 ': 'D', '111 ': 'S', '111A': 'S', '111B': 'G', '112C': 'Y', '112B': 'R', '112A': 'L', '112 ': 'G', '113 ': 'D', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGCAGTAAGCG-1_contig_1
|
AGGAATCAGACCCAGTCAGGACACAGCATGGACATGAGAGTCCTCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGTTTCCCAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCACTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGCATTAGCAATTATTTAGCCTGGTTTCAGCAGAAACCAGGGAAAGCCCCTAAGTCCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAAGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTACCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-16*02
| null |
IGKJ4*01
|
GACATCCAGATGACCCAGTCTCCATCCTCACTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGCATTAGCAATTATTTAGCCTGGTTTCAGCAGAAACCAGGGAAAGCCCCTAAGTCCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAAGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTACCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCACTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGCATTAGCAATTATTTAGCCTGGTTTCAGCAGAAACCAGGGAAAGCCCCTAAGTCCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAAGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTACCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCRASQGISNYLAWFQQKPGKAPKSLIYAASSLQSGVPSKFSGSGSGTDFTLTISSLQPEDFATYYCQQYNSYPLTFGGGTKVEIK
|
DIQMTQSPSSLSASVGDRVTITCRASQGISNYLAWFQQKPGKAPKSLIYAASSLQSGVPSKFSGSGSGTDFTLTISSLQPEDFATYYCQQYNSYPLTFGGGTKVEIK
|
1
|
286
| null | null |
287
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCACTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGCATTAGCAATTATTTAGCCTGGTTTCAGCAGAAACCAGGGAAAGCCCCTAAGTCCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAAGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTACCCTC
|
DIQMTQSPSSLSASVGDRVTITCRASQGISNYLAWFQQKPGKAPKSLIYAASSLQSGVPSKFSGSGSGTDFTLTISSLQPEDFATYYCQQYNSYP
|
GACATCCAGATGACCCAGTCTCCATCCTCACTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGCATTAGCAATTATTTAGCCTGGTTTCAGCAGAAACCAGGGAAAGCCCCTAAGTCCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAAGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTACCCTC
|
DIQMTQSPSSLSASVGDRVTITCRASQGISNYLAWFQQKPGKAPKSLIYAASSLQSGVPSKFSGSGSGTDFTLTISSLQPEDFATYYCQQYNSYP
| null | null | null | null |
TCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
TFGGGTKVEIK
|
TCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
TFGGGTKVEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCACTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGT
|
DIQMTQSPSSLSASVGDRVTITCRAS
|
CAGGGCATTAGCAATTAT
|
QGISNY
|
TTAGCCTGGTTTCAGCAGAAACCAGGGAAAGCCCCTAAGTCCCTGATCTAT
|
LAWFQQKPGKAPKSLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAAGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGC
|
SLQSGVPSKFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAACAGTATAATAGTTACCCTCTCACT
|
QQYNSYPLT
|
TGCCAACAGTATAATAGTTACCCTCTCACTTTC
|
33.0
|
CQQYNSYPLTF
|
11.0
|
447.456
| null |
69.904
|
93S286M172S1N
| null |
379S2N36M136S
|
1.288e-127
| null |
4.854e-16
|
100.0
| null |
100.0
|
94
|
379
|
1
|
286
| null | null | null | null |
380
|
415
|
3
|
38
|
94
|
171
|
172
|
189
|
190
|
240
|
241
|
249
|
250
|
357
|
385.0
|
414.0
|
358.0
|
384.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'G', '29 ': 'I', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'F', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'S', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'K', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'N', '109 ': 'S', '114 ': 'Y', '115 ': 'P', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGCATGGTTGT-1_contig_2
|
AGCTCTGAGAGAGGAGCCTTAGCCCTGGATTCCAAGGCCTATCCACTTGGTGATCAGCACTGAGCACCGAGGATTCACCATGGAACTGGGGCTCCGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGTGTCGGATATTGTAGTAGTACCAGCTGAACGACACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-21*01
|
IGHD2-2*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGTGTCGGATATTGTAGTAGTACCAGCTGAACGACACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGNNNNGGATATTGTAGTAGTACCAGCTGNNNNNNACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARVSDIVVVPAERHFDYWGQGTLVTVSS
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARXXDIVVVPAXXXFDYWGQGTLVTVSS
|
1
|
295
|
300.0
|
322.0
|
329
|
373
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
GGATATTGTAGTAGTACCAGCTG
|
DIVVVPA
|
GGATATTGTAGTAGTACCAGCTG
|
DIVVVPA
|
ACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
ACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVKPGGSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATAGC
|
GFTFSSYS
|
ATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCC
|
MNWVRQAPGKGLEWVSS
|
ATTAGTAGTAGTAGTAGTTACATA
|
ISSSSSYI
|
TACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGTGTCGGATATTGTAGTAGTACCAGCTGAACGACACTTTGACTAC
|
ARVSDIVVVPAERHFDY
|
TGTGCGAGAGTGTCGGATATTGTAGTAGTACCAGCTGAACGACACTTTGACTACTGG
|
57.0
|
CARVSDIVVVPAERHFDYW
|
19.0
|
461.479
|
44.909
|
87.208
|
136S295M149S1N
|
435S1N23M122S7N
|
464S3N45M71S
|
8.119000000000001e-132
|
7.867e-09
|
3.160000000000001e-21
|
100.0
|
100.0
|
100.0
|
137
|
431
|
1
|
295
|
436.0
|
458.0
|
2.0
|
24.0
|
465
|
509
|
4
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
476.0
|
508.0
|
425.0
|
475.0
|
TGTC
|
4
|
AACGAC
|
6.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'S'}, 'fwh2': {'39 ': 'M', '40 ': 'N', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'S'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'S', '59 ': 'S', '62 ': 'S', '63 ': 'S', '64 ': 'Y', '65 ': 'I'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'V', '108 ': 'S', '109 ': 'D', '110 ': 'I', '111 ': 'V', '111A': 'V', '111B': 'V', '112B': 'P', '112A': 'A', '112 ': 'E', '113 ': 'R', '114 ': 'H', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGCATGGTTGT-1_contig_1
|
GCTGTGCTGTGGGTCCAGGAGGCAGAACTCTGGGTGTCTCACCATGGCCTGGATCCCTCTACTTCTCCCCCTCCTCACTCTCTGCACAGGCTCTGAGGCCTCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTTTCTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-25*03
| null |
IGLJ2*01
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTTTCTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTTNNTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGTFFGGGTKLTVL
|
SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGTXFGGGTKLTVL
|
1
|
286
| null | null |
289
|
319
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTT
|
SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGT
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTT
|
SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGT
| null | null | null | null |
TTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
FGGGTKLTVL
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
FGGGTKLTVL
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGAT
|
SYELTQPPSVSVSPGQTARITCSGD
|
GCATTGCCAAAGCAATAT
|
ALPKQY
|
GCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATAT
|
AYWYQQKPGQAPVLVIY
|
AAAGACAGT
|
KDS
|
GAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGT
|
ERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAATCAGCAGACAGCAGTGGTACTTTC
|
QSADSSGTF
|
TGTCAATCAGCAGACAGCAGTGGTACTTTCTTC
|
33.0
|
CQSADSSGTFF
|
11.0
|
447.456
| null |
60.291
|
100S286M244S4N
| null |
388S7N31M211S
|
1.4739999999999999e-127
| null |
4.358e-13
|
100.0
| null |
100.0
|
101
|
386
|
1
|
286
| null | null | null | null |
389
|
419
|
8
|
38
|
101
|
175
|
176
|
193
|
194
|
244
|
245
|
253
|
254
|
361
|
389.0
|
418.0
|
362.0
|
388.0
|
TC
|
2
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'E', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'R', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'D'}, 'cdrl1': {'27 ': 'A', '28 ': 'L', '29 ': 'P', '36 ': 'K', '37 ': 'Q', '38 ': 'Y'}, 'fwl2': {'39 ': 'A', '40 ': 'Y', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'K', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'E', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'S', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'T', '87 ': 'V', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'V', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'S', '107 ': 'A', '108 ': 'D', '109 ': 'S', '114 ': 'S', '115 ': 'G', '116 ': 'T', '117 ': 'F'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGCATTGCGGC-1_contig_2
|
AGCTCTGAGAGAGGAGCCTTAGCCCTGGATTCCAAGGCCTATCCACTTGGTGATCAGCACTGAGCACCGAGGATTCACCATGGAACTGGGGCTCCGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGTGTGGTGGTGACTGCTATTACTTGGATAGAGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-21*01
|
IGHD2-21*02
|
IGHJ3*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGTGTGGTGGTGACTGCTATTACTTGGATAGAGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGANTGTGGTGGTGACTGCTATTNNNNNNNNNNNGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARECGGDCYYLDRDAFDIWGQGTMVTVSS
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARXCGGDCYXXXXDAFDIWGQGTMVTVSS
|
1
|
296
|
298.0
|
316.0
|
328
|
376
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
TGTGGTGGTGACTGCTATT
|
CGGDCY
|
TGTGGTGGTGACTGCTATT
|
CGGDCY
|
GATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
GATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVKPGGSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATAGC
|
GFTFSSYS
|
ATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCC
|
MNWVRQAPGKGLEWVSS
|
ATTAGTAGTAGTAGTAGTTACATA
|
ISSSSSYI
|
TACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
GCGAGAGAGTGTGGTGGTGACTGCTATTACTTGGATAGAGATGCTTTTGATATC
|
ARECGGDCYYLDRDAFDI
|
TGTGCGAGAGAGTGTGGTGGTGACTGCTATTACTTGGATAGAGATGCTTTTGATATCTGG
|
60.0
|
CARECGGDCYYLDRDAFDIW
|
20.0
|
463.037
|
37.218
|
94.899
|
136S296M151S
|
433S7N19M131S2N
|
463S1N49M71S
|
2.772e-132
|
1.634e-06
|
1.5379999999999998e-23
|
100.0
|
100.0
|
100.0
|
137
|
432
|
1
|
296
|
434.0
|
452.0
|
8.0
|
26.0
|
464
|
512
|
2
|
50
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
479.0
|
511.0
|
425.0
|
478.0
|
G
|
1
|
ACTTGGATAGA
|
11.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'S'}, 'fwh2': {'39 ': 'M', '40 ': 'N', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'S'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'S', '59 ': 'S', '62 ': 'S', '63 ': 'S', '64 ': 'Y', '65 ': 'I'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'E', '108 ': 'C', '109 ': 'G', '110 ': 'G', '111 ': 'D', '111A': 'C', '111B': 'Y', '112C': 'Y', '112B': 'L', '112A': 'D', '112 ': 'R', '113 ': 'D', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGCATTGCGGC-1_contig_1
|
AGGAGTCAGACCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGTTCCCAGGTTCCAGATGCGACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-12*01
| null |
IGKJ2*01
|
GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFPYTFGQGTKLEIK
|
DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFPYTFGQGTKLEIK
|
1
|
284
| null | null |
285
|
322
|
GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCC
|
DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFP
|
GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCC
|
DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFP
| null | null | null | null |
GTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
GTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGT
|
DIQMTQSPSSVSASVGDRVTITCRAS
|
CAGGGTATTAGCAGCTGG
|
QGISSW
|
TTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LAWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTTGGCCAGGGGACCAAGCTGGAGATCAAA
|
FGQGTKLEIK
|
CAACAGGCTAACAGTTTCCCGTACACT
|
QQANSFPYT
|
TGTCAACAGGCTAACAGTTTCCCGTACACTTTT
|
33.0
|
CQQANSFPYTF
|
11.0
|
444.34
| null |
73.749
|
93S284M174S3N
| null |
377S1N38M136S
|
1.117e-126
| null |
3.377e-17
|
100.0
| null |
100.0
|
94
|
377
|
1
|
284
| null | null | null | null |
378
|
415
|
2
|
39
|
94
|
171
|
172
|
189
|
190
|
240
|
241
|
249
|
250
|
357
|
385.0
|
414.0
|
358.0
|
384.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'G', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'W'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'A', '108 ': 'N', '109 ': 'S', '114 ': 'F', '115 ': 'P', '116 ': 'Y', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGGTCAAAGCG-1_contig_2
|
GGGAGAGGAGCCCAGCACTGGGATTCCGAGGTGTTTCCATTCGGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTTTGGCTGAGCTGGGTTTTCCTTGTTGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAATTGTGGGAGCTACTATGAGGGAGAGGGGGGTTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-53*01
|
IGHD1-26*01
|
IGHJ3*02
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAATTGTGGGAGCTACTATGAGGGAGAGGGGGGTTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGANNNGTGGGAGCTACTANNNNNNNNNNNNNNNNTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARIVGATMRERGVFDIWGQGTMVTVSS
|
EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARXVGATXXXXXXFDIWGQGTMVTVSS
|
1
|
291
|
295.0
|
307.0
|
324
|
367
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGA
|
EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGA
|
EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
GTGGGAGCTACTA
|
VGAT
|
GTGGGAGCTACTA
|
VGAT
|
TTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
FDIWGQGTMVTVSS
|
TTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
FDIWGQGTMVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLIQPGGSLRLSCAAS
|
GGGTTCACCGTCAGTAGCAACTAC
|
GFTVSSNY
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTT
|
MSWVRQAPGKGLEWVSV
|
ATTTATAGCGGTGGTAGCACA
|
IYSGGST
|
TACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
GCGAGAATTGTGGGAGCTACTATGAGGGAGAGGGGGGTTTTTGATATC
|
ARIVGATMRERGVFDI
|
TGTGCGAGAATTGTGGGAGCTACTATGAGGGAGAGGGGGGTTTTTGATATCTGG
|
54.0
|
CARIVGATMRERGVFDIW
|
18.0
|
455.247
|
25.682
|
85.286
|
130S291M147S2N
|
424S6N13M131S1N
|
453S6N44M71S
|
6.006e-130
|
0.004726
|
1.173e-20
|
100.0
|
100.0
|
100.0
|
131
|
421
|
1
|
291
|
425.0
|
437.0
|
7.0
|
19.0
|
454
|
497
|
7
|
50
|
131
|
205
|
206
|
229
|
230
|
280
|
281
|
301
|
302
|
415
|
464.0
|
496.0
|
416.0
|
463.0
|
ATT
|
3
|
TGAGGGAGAGGGGGGT
|
16.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'I', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'V', '35 ': 'S', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'S', '59 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'I', '108 ': 'V', '109 ': 'G', '110 ': 'A', '111 ': 'T', '111A': 'M', '112B': 'R', '112A': 'E', '112 ': 'R', '113 ': 'G', '114 ': 'V', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGGTCAAAGCG-1_contig_1
|
AGGAGTCAGACCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCCCAGGTGCCAAATGTGACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCTTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-5*03
| null |
IGKJ2*01
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCTTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCTTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYSYTFGQGTKLEIK
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYSYTFGQGTKLEIK
|
1
|
285
| null | null |
286
|
322
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCT
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYS
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCT
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYS
| null | null | null | null |
TACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
TACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGT
|
DIQMTQSPSTLSASVGDRVTITCRAS
|
CAGAGTATTAGTAGCTGG
|
QSISSW
|
TTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LAWYQQKPGKAPKLLIY
|
AAGGCGTCT
|
KAS
|
AGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGC
|
SLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYC
|
TTTGGCCAGGGGACCAAGCTGGAGATCAAA
|
FGQGTKLEIK
|
CAACAGTATAATAGTTATTCTTACACT
|
QQYNSYSYT
|
TGCCAACAGTATAATAGTTATTCTTACACTTTT
|
33.0
|
CQQYNSYSYTF
|
11.0
|
445.898
| null |
71.827
|
93S285M173S2N
| null |
378S2N37M136S
|
3.792e-127
| null |
1.28e-16
|
100.0
| null |
100.0
|
94
|
378
|
1
|
285
| null | null | null | null |
379
|
415
|
3
|
39
|
94
|
171
|
172
|
189
|
190
|
240
|
241
|
249
|
250
|
357
|
385.0
|
414.0
|
358.0
|
384.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'W'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'K', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'E', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'D', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'N', '109 ': 'S', '114 ': 'Y', '115 ': 'S', '116 ': 'Y', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGGTCAATACC-1_contig_1
|
ATCACATAACAACCAGATTCCTCCTCTAAAGAAGCCCCTGGGAGCACAGCTCATCACCATGGACTGGACCTGGAGGTTCCTCTTTGTGGTGGCAGCAGCTACAGGTGTCCAGTCCCAGGTCCAGCTGGTGCAATCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATACTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGTGATCTATGATAGTAGTGGTGCTCTCGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-69*02
|
IGHD3-22*01
|
IGHJ4*02
|
CAGGTCCAGCTGGTGCAATCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATACTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGTGATCTATGATAGTAGTGGTGCTCTCGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTCCAGCTGGTGCAATCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATACTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGANNNNNCTATGATAGTAGTGGTNNNNNNGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYTISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYCARVIYDSSGALDYWGQGTLVTVSS
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYTISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYCARXXYDSSGXXDYWGQGTLVTVSS
|
1
|
294
|
300.0
|
315.0
|
322
|
361
|
CAGGTCCAGCTGGTGCAATCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATACTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGA
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYTISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYCAR
|
CAGGTCCAGCTGGTGCAATCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATACTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGA
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYTISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYCAR
|
CTATGATAGTAGTGGT
|
YDSSG
|
CTATGATAGTAGTGGT
|
YDSSG
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
CAGGTCCAGCTGGTGCAATCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGSSVKVSCKAS
|
GGAGGCACCTTCAGCAGCTATACT
|
GGTFSSYT
|
ATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGG
|
ISWVRQAPGQGLEWMGR
|
ATCATCCCTATCCTTGGTATAGCA
|
IIPILGIA
|
AACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGTGATCTATGATAGTAGTGGTGCTCTCGACTAC
|
ARVIYDSSGALDY
|
TGTGCGAGAGTGATCTATGATAGTAGTGGTGCTCTCGACTACTGG
|
45.0
|
CARVIYDSSGALDYW
|
15.0
|
459.921
|
31.45
|
77.595
|
115S294M138S
|
414S6N16M117S9N
|
436S8N40M71S
|
2.2610000000000003e-131
|
8.345e-05
|
2.332e-18
|
100.0
|
100.0
|
100.0
|
116
|
409
|
1
|
294
|
415.0
|
430.0
|
7.0
|
22.0
|
437
|
476
|
9
|
48
|
116
|
190
|
191
|
214
|
215
|
265
|
266
|
289
|
290
|
403
|
443.0
|
475.0
|
404.0
|
442.0
|
GTGAT
|
5
|
GCTCTC
|
6.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'S', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'T'}, 'fwh2': {'39 ': 'I', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'I', '58 ': 'P', '59 ': 'I', '62 ': 'L', '63 ': 'G', '64 ': 'I', '65 ': 'A'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'T', '80 ': 'A', '81 ': 'D', '82 ': 'K', '83 ': 'S', '84 ': 'T', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'V', '108 ': 'I', '109 ': 'Y', '110 ': 'D', '111 ': 'S', '112 ': 'S', '113 ': 'G', '114 ': 'A', '115 ': 'L', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGGTCAATACC-1_contig_2
|
GGGAGAGCCCTGGGGAGGAACTGCTCAGTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACCGGAGAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-11*01
| null |
IGKJ1*01
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWTFGQGTKVEIK
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWTFGQGTKVEIK
|
1
|
282
| null | null |
283
|
316
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGG
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNW
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGG
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNW
| null | null | null | null |
ACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
ACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVLTQSPATLSLSPGERATLSCRAS
|
CAGAGTGTTAGCAGCTAC
|
QSVSSY
|
TTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GATGCATCC
|
DAS
|
AACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGT
|
NRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAGCAGCGTAGCAACTGGACG
|
QQRSNWT
|
TGTCAGCAGCGTAGCAACTGGACGTTC
|
27.0
|
CQQRSNWTF
|
9.0
|
441.224
| null |
66.059
|
107S282M170S5N
| null |
389S4N34M136S
|
9.831e-126
| null |
7.081e-15
|
100.0
| null |
100.0
|
108
|
389
|
1
|
282
| null | null | null | null |
390
|
423
|
5
|
38
|
108
|
185
|
186
|
203
|
204
|
254
|
255
|
263
|
264
|
371
|
393.0
|
422.0
|
372.0
|
392.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'A', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'L', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'A', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'E', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'R', '108 ': 'S', '115 ': 'N', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGGTCCAGTGC-1_contig_1
|
ATCACATAACAACCACATTCCTCCTCTAAAGAAGCCCCTGGGAGCACAGCTCATCACCATGGACTGGACCTGGAGGTTCCTCTTTGTGGTGGCAGCAGCTACAGGTGTCCAGTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGTTGCGTATTACTATGATAGTAGTGGTTATCCCGCCCAGGTTTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-69*01
|
IGHD3-22*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGTTGCGTATTACTATGATAGTAGTGGTTATCCCGCCCAGGTTTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGNNNNGTATTACTATGATAGTAGTGGTTATNNNNNNNNNNNNTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARVAYYYDSSGYPAQVYFDYWGQGTLVTVSS
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARXXYYYDSSGYXXXXYFDYWGQGTLVTVSS
|
1
|
295
|
300.0
|
324.0
|
337
|
382
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAR
|
GTATTACTATGATAGTAGTGGTTAT
|
YYYDSSGY
|
GTATTACTATGATAGTAGTGGTTAT
|
YYYDSSGY
|
TACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YFDYWGQGTLVTVSS
|
TACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YFDYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGSSVKVSCKAS
|
GGAGGCACCTTCAGCAGCTATGCT
|
GGTFSSYA
|
ATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGG
|
ISWVRQAPGQGLEWMGG
|
ATCATCCCTATCTTTGGTACAGCA
|
IIPIFGTA
|
AACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGTTGCGTATTACTATGATAGTAGTGGTTATCCCGCCCAGGTTTACTTTGACTAC
|
ARVAYYYDSSGYPAQVYFDY
|
TGTGCGAGAGTTGCGTATTACTATGATAGTAGTGGTTATCCCGCCCAGGTTTACTTTGACTACTGG
|
66.0
|
CARVAYYYDSSGYPAQVYFDYW
|
22.0
|
461.479
|
48.755
|
89.131
|
115S295M158S1N
|
414S25M129S6N
|
451S2N46M71S
|
7.987000000000001e-132
|
5.358e-10
|
8.159999999999999e-22
|
100.0
|
100.0
|
100.0
|
116
|
410
|
1
|
295
|
415.0
|
439.0
|
1.0
|
25.0
|
452
|
497
|
3
|
48
|
116
|
190
|
191
|
214
|
215
|
265
|
266
|
289
|
290
|
403
|
464.0
|
496.0
|
404.0
|
463.0
|
TTGC
|
4
|
CCCGCCCAGGTT
|
12.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'S', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'I', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'G'}, 'cdrh2': {'56 ': 'I', '57 ': 'I', '58 ': 'P', '59 ': 'I', '62 ': 'F', '63 ': 'G', '64 ': 'T', '65 ': 'A'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'T', '80 ': 'A', '81 ': 'D', '82 ': 'E', '83 ': 'S', '84 ': 'T', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'V', '108 ': 'A', '109 ': 'Y', '110 ': 'Y', '111 ': 'Y', '111A': 'D', '111B': 'S', '111C': 'S', '112D': 'G', '112C': 'Y', '112B': 'P', '112A': 'A', '112 ': 'Q', '113 ': 'V', '114 ': 'Y', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGGTCCAGTGC-1_contig_2
|
GAGCTACAACAGGCAGGCAGGGGCAGCAAGATGGTGTTGCAGACCCAGGTCTTCATTTCTCTGTTGCTCTGGATCTCTGGTGCCTACGGGGACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV4-1*01
| null |
IGKJ4*01
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPLTFGGGTKVEIK
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPLTFGGGTKVEIK
|
1
|
302
| null | null |
303
|
340
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTP
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTP
| null | null | null | null |
GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGC
|
DIVMTQSPDSLAVSLGERATINCKSS
|
CAGAGTGTTTTATACAGCTCCAACAATAAGAACTAC
|
QSVLYSSNNKNY
|
TTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTAC
|
LAWYQQKPGQPPKLLIY
|
TGGGCATCT
|
WAS
|
ACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGT
|
TRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAGCAATATTATAGTACTCCGCTCACT
|
QQYYSTPLT
|
TGTCAGCAATATTATAGTACTCCGCTCACTTTC
|
33.0
|
CQQYYSTPLTF
|
11.0
|
472.386
| null |
73.749
|
90S302M174S3N
| null |
392S38M136S
|
4.145e-135
| null |
3.471e-17
|
100.0
| null |
100.0
|
91
|
392
|
1
|
302
| null | null | null | null |
393
|
430
|
1
|
38
|
91
|
168
|
169
|
204
|
205
|
255
|
256
|
264
|
265
|
372
|
400.0
|
429.0
|
373.0
|
399.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'D', '10 ': 'S', '11 ': 'L', '12 ': 'A', '13 ': 'V', '14 ': 'S', '15 ': 'L', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'I', '22 ': 'N', '23 ': 'C', '24 ': 'K', '25 ': 'S', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '30 ': 'L', '31 ': 'Y', '32 ': 'S', '33 ': 'S', '34 ': 'N', '35 ': 'N', '36 ': 'K', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'P', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'W', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'R', '68 ': 'E', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'V', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'Y', '109 ': 'S', '114 ': 'T', '115 ': 'P', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGGTTGAGGTG-1_contig_2
|
AGCTCTGGGAGAGGAGCTCCAGCCTTGGGATTCCCAGCTGTCTCCACTCGGTGATCGGCACTGAATACAGGAGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTCCTTGTTGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCCGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAAACTCTCCTGTGCAGCCTCTGGGTTCACCTTCAGTGGCTCTGCTATGCACTGGGTCCGCCAGGCTTCCGGGAAAGGGCTGGAGTGGGTTGGCCGTATTAGAAGCAAAGCTAACAGTTACGCGACAGCATATGCTGCGTCGGTGAAAGGCAGGTTCACCATCTCCAGAGATGATTCAAAGAACACGGCGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACGGCCGTGTATTACTGTACTAGACCTCTACATGGCTACAATTGGGGGCCGTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-73*02
|
IGHD5-12*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCCGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAAACTCTCCTGTGCAGCCTCTGGGTTCACCTTCAGTGGCTCTGCTATGCACTGGGTCCGCCAGGCTTCCGGGAAAGGGCTGGAGTGGGTTGGCCGTATTAGAAGCAAAGCTAACAGTTACGCGACAGCATATGCTGCGTCGGTGAAAGGCAGGTTCACCATCTCCAGAGATGATTCAAAGAACACGGCGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACGGCCGTGTATTACTGTACTAGACCTCTACATGGCTACAATTGGGGGCCGTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCCGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAAACTCTCCTGTGCAGCCTCTGGGTTCACCTTCAGTGGCTCTGCTATGCACTGGGTCCGCCAGGCTTCCGGGAAAGGGCTGGAGTGGGTTGGCCGTATTAGAAGCAAAGCTAACAGTTACGCGACAGCATATGCTGCGTCGGTGAAAGGCAGGTTCACCATCTCCAGAGATGATTCAAAGAACACGGCGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACGGCCGTGTATTACTGTACTAGACNNNNNNNTGGCTACGATTNNNNNNNNTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVQPGGSLKLSCAASGFTFSGSAMHWVRQASGKGLEWVGRIRSKANSYATAYAASVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCTRPLHGYNWGPFDYWGQGTLVTVSS
|
EVQLVESGGGLVQPGGSLKLSCAASGFTFSGSAMHWVRQASGKGLEWVGRIRSKANSYATAYAASVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCTRXXXGYDXXXFDYWGQGTLVTVSS
|
1
|
301
|
309.0
|
319.0
|
328
|
370
|
GAGGTGCAGCTGGTGGAGTCCGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAAACTCTCCTGTGCAGCCTCTGGGTTCACCTTCAGTGGCTCTGCTATGCACTGGGTCCGCCAGGCTTCCGGGAAAGGGCTGGAGTGGGTTGGCCGTATTAGAAGCAAAGCTAACAGTTACGCGACAGCATATGCTGCGTCGGTGAAAGGCAGGTTCACCATCTCCAGAGATGATTCAAAGAACACGGCGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACGGCCGTGTATTACTGTACTAGAC
|
EVQLVESGGGLVQPGGSLKLSCAASGFTFSGSAMHWVRQASGKGLEWVGRIRSKANSYATAYAASVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCTR
|
GAGGTGCAGCTGGTGGAGTCCGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAAACTCTCCTGTGCAGCCTCTGGGTTCACCTTCAGTGGCTCTGCTATGCACTGGGTCCGCCAGGCTTCCGGGAAAGGGCTGGAGTGGGTTGGCCGTATTAGAAGCAAAGCTAACAGTTACGCGACAGCATATGCTGCGTCGGTGAAAGGCAGGTTCACCATCTCCAGAGATGATTCAAAGAACACGGCGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACGGCCGTGTATTACTGTACTAGAC
|
EVQLVESGGGLVQPGGSLKLSCAASGFTFSGSAMHWVRQASGKGLEWVGRIRSKANSYATAYAASVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCTR
|
TGGCTACAATT
|
GYN
|
TGGCTACGATT
|
GYD
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCCGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAAACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGGSLKLSCAAS
|
GGGTTCACCTTCAGTGGCTCTGCT
|
GFTFSGSA
|
ATGCACTGGGTCCGCCAGGCTTCCGGGAAAGGGCTGGAGTGGGTTGGCCGT
|
MHWVRQASGKGLEWVGR
|
ATTAGAAGCAAAGCTAACAGTTACGCGACA
|
IRSKANSYAT
|
GCATATGCTGCGTCGGTGAAAGGCAGGTTCACCATCTCCAGAGATGATTCAAAGAACACGGCGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACGGCCGTGTATTACTGT
|
AYAASVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
ACTAGACCTCTACATGGCTACAATTGGGGGCCGTTTGACTAC
|
TRPLHGYNWGPFDY
|
TGTACTAGACCTCTACATGGCTACAATTGGGGGCCGTTTGACTACTGG
|
48.0
|
CTRPLHGYNWGPFDYW
|
16.0
|
470.828
|
16.069
|
83.363
|
137S301M140S1N
|
445S10N11M122S2N
|
464S5N43M71S
|
1.241e-134
|
3.768
|
4.527e-20
|
100.0
|
90.909
|
100.0
|
138
|
438
|
1
|
301
|
446.0
|
456.0
|
11.0
|
21.0
|
465
|
507
|
6
|
48
|
138
|
212
|
213
|
236
|
237
|
287
|
288
|
317
|
318
|
431
|
474.0
|
506.0
|
432.0
|
473.0
|
CTCTACA
|
7
|
GGGGGCCG
|
8.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'K', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'G', '37 ': 'S', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'S', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'R', '58 ': 'S', '59 ': 'K', '60 ': 'A', '61 ': 'N', '62 ': 'S', '63 ': 'Y', '64 ': 'A', '65 ': 'T'}, 'fwh3': {'66 ': 'A', '67 ': 'Y', '68 ': 'A', '69 ': 'A', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'D', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'K', '96 ': 'T', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'T', '106 ': 'R', '107 ': 'P', '108 ': 'L', '109 ': 'H', '110 ': 'G', '111 ': 'Y', '112A': 'N', '112 ': 'W', '113 ': 'G', '114 ': 'P', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGGTTGAGGTG-1_contig_1
|
GAGCTACAACAGGCAGGCAGGGGCAGCAAGATGGTGTTGCAGACCCAGGTCTTCATTTCTCTGTTGCTCTGGATCTCTGGTGCCTACGGGGACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCAGACTTTCGGCCCTGGGACCAAAGTGGATATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV4-1*01
| null |
IGKJ3*01
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCAGACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCNNACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPQTFGPGTKVDIK
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPXTFGPGTKVDIK
|
1
|
304
| null | null |
307
|
340
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTP
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTP
| null | null | null | null |
ACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
TFGPGTKVDIK
|
ACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
TFGPGTKVDIK
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGC
|
DIVMTQSPDSLAVSLGERATINCKSS
|
CAGAGTGTTTTATACAGCTCCAACAATAAGAACTAC
|
QSVLYSSNNKNY
|
TTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTAC
|
LAWYQQKPGQPPKLLIY
|
TGGGCATCT
|
WAS
|
ACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGT
|
TRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYC
|
TTCGGCCCTGGGACCAAAGTGGATATCAAA
|
FGPGTKVDIK
|
CAGCAATATTATAGTACTCCTCAGACT
|
QQYYSTPQT
|
TGTCAGCAATATTATAGTACTCCTCAGACTTTC
|
33.0
|
CQQYYSTPQTF
|
11.0
|
475.502
| null |
66.059
|
90S304M172S1N
| null |
396S4N34M136S
|
4.78e-136
| null |
7.171e-15
|
100.0
| null |
100.0
|
91
|
394
|
1
|
304
| null | null | null | null |
397
|
430
|
5
|
38
|
91
|
168
|
169
|
204
|
205
|
255
|
256
|
264
|
265
|
372
|
400.0
|
429.0
|
373.0
|
399.0
|
AG
|
2
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'D', '10 ': 'S', '11 ': 'L', '12 ': 'A', '13 ': 'V', '14 ': 'S', '15 ': 'L', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'I', '22 ': 'N', '23 ': 'C', '24 ': 'K', '25 ': 'S', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '30 ': 'L', '31 ': 'Y', '32 ': 'S', '33 ': 'S', '34 ': 'N', '35 ': 'N', '36 ': 'K', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'P', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'W', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'R', '68 ': 'E', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'V', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'Y', '109 ': 'S', '114 ': 'T', '115 ': 'P', '116 ': 'Q', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'P', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'D', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGGTTTGGGCC-1_contig_1
|
ATCACATAACAACCACATTCCTCCTCTAAAGAAGCCCCTGGGAGCACAGCTCATCACCATGGACTGGACCTGGAGGTTCCTCTTTGTGGTGGCAGCAGCTACAGGTGTCCAGTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGAGGCTGTAGTAGTACCACCTACACCGAATGGTGTACCCTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-69*01
|
IGHD2-2*01
|
IGHJ6*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGAGGCTGTAGTAGTACCACCTACACCGAATGGTGTACCCTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGANNNTGTAGTAGTACCANNNNNNNNNNNNNNNNNNNNCTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAREAVVVPPTPNGVPYYYGMDVWGQGTTVTVSS
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARXXVVVPXXXXXXXYYYGMDVWGQGTTVTVSS
|
1
|
296
|
300.0
|
312.0
|
333
|
387
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAR
|
TGTAGTAGTACCA
|
VVVP
|
TGTAGTAGTACCA
|
VVVP
|
CTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYGMDVWGQGTTVTVSS
|
CTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYGMDVWGQGTTVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGSSVKVSCKAS
|
GGAGGCACCTTCAGCAGCTATGCT
|
GGTFSSYA
|
ATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGG
|
ISWVRQAPGQGLEWMGG
|
ATCATCCCTATCTTTGGTACAGCA
|
IIPIFGTA
|
AACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAGAGAGGCTGTAGTAGTACCACCTACACCGAATGGTGTACCCTACTACTACGGTATGGACGTC
|
AREAVVVPPTPNGVPYYYGMDV
|
TGTGCGAGAGAGGCTGTAGTAGTACCACCTACACCGAATGGTGTACCCTACTACTACGGTATGGACGTCTGG
|
72.0
|
CAREAVVVPPTPNGVPYYYGMDVW
|
24.0
|
463.037
|
25.682
|
106.435
|
115S296M163S
|
414S7N13M147S11N
|
447S7N55M72S
|
2.727e-132
|
0.004776
|
5.096e-27
|
100.0
|
100.0
|
100.0
|
116
|
411
|
1
|
296
|
415.0
|
427.0
|
8.0
|
20.0
|
448
|
502
|
8
|
62
|
116
|
190
|
191
|
214
|
215
|
265
|
266
|
289
|
290
|
403
|
470.0
|
502.0
|
404.0
|
469.0
|
GGC
|
3
|
CCTACACCGAATGGTGTACC
|
20.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'S', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'I', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'G'}, 'cdrh2': {'56 ': 'I', '57 ': 'I', '58 ': 'P', '59 ': 'I', '62 ': 'F', '63 ': 'G', '64 ': 'T', '65 ': 'A'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'T', '80 ': 'A', '81 ': 'D', '82 ': 'E', '83 ': 'S', '84 ': 'T', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'E', '108 ': 'A', '109 ': 'V', '110 ': 'V', '111 ': 'V', '111A': 'P', '111B': 'P', '111C': 'T', '111D': 'P', '112E': 'N', '112D': 'G', '112C': 'V', '112B': 'P', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGGTTTGGGCC-1_contig_2
|
AGAGCTCTGGGGAGGAACTGCTCAGTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACTGGAGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCGAACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-15*01
| null |
IGKJ1*01
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCGAACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCNNACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPRTFGQGTKVEIK
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPXTFGQGTKVEIK
|
1
|
286
| null | null |
289
|
322
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTC
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWP
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTC
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWP
| null | null | null | null |
ACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
ACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVMTQSPATLSVSPGERATLSCRAS
|
CAGAGTGTTAGCAGCAAC
|
QSVSSN
|
TTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GGTGCATCC
|
GAS
|
ACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGT
|
TRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAGCAGTATAATAACTGGCCTCGAACG
|
QQYNNWPRT
|
TGTCAGCAGTATAATAACTGGCCTCGAACGTTC
|
33.0
|
CQQYNNWPRTF
|
11.0
|
447.456
| null |
66.059
|
104S286M172S1N
| null |
392S4N34M136S
|
1.315e-127
| null |
7.119e-15
|
100.0
| null |
100.0
|
105
|
390
|
1
|
286
| null | null | null | null |
393
|
426
|
5
|
38
|
105
|
182
|
183
|
200
|
201
|
251
|
252
|
260
|
261
|
368
|
396.0
|
425.0
|
369.0
|
395.0
|
GA
|
2
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'A', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '36 ': 'S', '37 ': 'S', '38 ': 'N'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'G', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'A', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'N', '109 ': 'N', '114 ': 'W', '115 ': 'P', '116 ': 'R', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGTCAAGAAGT-1_contig_2
|
AGCTCTGGGAGAGGAGCCCCAGCCTTGGGATTCCCAAGTGTTTTCATTCAGTGATCAGGACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGATTTTCCTTGCTGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGAGCAAATCCGCCGGGGATACAGCTATGGTTTAGGTGTGGCTATGGCTGCGTGGGCCCCCAATGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-15*01
|
IGHD5-18*01
|
IGHJ3*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGAGCAAATCCGCCGGGGATACAGCTATGGTTTAGGTGTGGCTATGGCTGCGTGGGCCCCCAATGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGANNNNNNNNNNNNNGGATACAGCTATGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTEQIRRGYSYGLGVAMAAWAPNDAFDIWGQGTMVTVSS
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTXXXXXGYSYGXXXXXXXXXXXDAFDIWGQGTMVTVSS
|
1
|
302
|
316.0
|
331.0
|
363
|
412
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTT
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTT
|
GGATACAGCTATGGTT
|
GYSYG
|
GGATACAGCTATGGTT
|
GYSYG
|
TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVKPGGSLRLSCAAS
|
GGATTCACTTTCAGTAACGCCTGG
|
GFTFSNAW
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGT
|
MSWVRQAPGKGLEWVGR
|
ATTAAAAGCAAAACTGATGGTGGGACAACA
|
IKSKTDGGTT
|
GACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGT
|
DYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
ACCACAGAGCAAATCCGCCGGGGATACAGCTATGGTTTAGGTGTGGCTATGGCTGCGTGGGCCCCCAATGATGCTTTTGATATC
|
TTEQIRRGYSYGLGVAMAAWAPNDAFDI
|
TGTACCACAGAGCAAATCCGCCGGGGATACAGCTATGGTTTAGGTGTGGCTATGGCTGCGTGGGCCCCCAATGATGCTTTTGATATCTGG
|
90.0
|
CTTEQIRRGYSYGLGVAMAAWAPNDAFDIW
|
30.0
|
472.386
|
31.45
|
96.822
|
137S302M181S
|
452S2N16M152S2N
|
499S50M71S
|
4.536e-135
|
9.48e-05
|
4.318e-24
|
100.0
|
100.0
|
100.0
|
138
|
439
|
1
|
302
|
453.0
|
468.0
|
3.0
|
18.0
|
500
|
549
|
1
|
50
|
138
|
212
|
213
|
236
|
237
|
287
|
288
|
317
|
318
|
431
|
516.0
|
548.0
|
432.0
|
515.0
|
GCAAATCCGCCGG
|
13
|
TAGGTGTGGCTATGGCTGCGTGGGCCCCCAA
|
31.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'N', '37 ': 'A', '38 ': 'W'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'K', '58 ': 'S', '59 ': 'K', '60 ': 'T', '61 ': 'D', '62 ': 'G', '63 ': 'G', '64 ': 'T', '65 ': 'T'}, 'fwh3': {'66 ': 'D', '67 ': 'Y', '68 ': 'A', '69 ': 'A', '70 ': 'P', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'D', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'K', '96 ': 'T', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'T', '106 ': 'T', '107 ': 'E', '108 ': 'Q', '109 ': 'I', '110 ': 'R', '111 ': 'R', '111A': 'G', '111B': 'Y', '111C': 'S', '111D': 'Y', '111E': 'G', '111F': 'L', '111G': 'G', '112H': 'V', '112G': 'A', '112F': 'M', '112E': 'A', '112D': 'A', '112C': 'W', '112B': 'A', '112A': 'P', '112 ': 'N', '113 ': 'D', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGTCAAGAAGT-1_contig_1
|
TCTGAGGATACGCGTGACAGATAAGAAGGGCTGGTGGGATCAGTCCTGGTGGTAGCTCAGGAAGCAGAGCCTGGAGCATCTCCACTATGGCCTGGGCTCCACTACTTCTCACCCTCCTCGCTCACTGCACAGGTTCTTGGGCCAATTTTATGCTGACTCAGCCCCACTCTGTGTCGGAGTCTCCGGGGAAGACGGTAACCATCTCCTGCACCCGCAGCAGTGGCAGCATTGCCAGCAACTATGTGCAGTGGTACCAGCAGCGCCCGGGCAGTTCCCCCACCACTGTGATCTATGAGGATAACCAAAGACCCTCTGGGGTCCCTGATCGGTTCTCTGGCTCCATCGACAGCTCCTCCAACTCTGCCTCCCTCACCATCTCTGGACTGAAGACTGAGGACGAGGCTGACTACTACTGTCAGTCTTATGATAGCAGCATCTATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV6-57*01
| null |
IGLJ2*01
|
AATTTTATGCTGACTCAGCCCCACTCTGTGTCGGAGTCTCCGGGGAAGACGGTAACCATCTCCTGCACCCGCAGCAGTGGCAGCATTGCCAGCAACTATGTGCAGTGGTACCAGCAGCGCCCGGGCAGTTCCCCCACCACTGTGATCTATGAGGATAACCAAAGACCCTCTGGGGTCCCTGATCGGTTCTCTGGCTCCATCGACAGCTCCTCCAACTCTGCCTCCCTCACCATCTCTGGACTGAAGACTGAGGACGAGGCTGACTACTACTGTCAGTCTTATGATAGCAGCATCTATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
AATTTTATGCTGACTCAGCCCCACTCTGTGTCGGAGTCTCCGGGGAAGACGGTAACCATCTCCTGCACCCGCAGCAGTGGCAGCATTGCCAGCAACTATGTGCAGTGGTACCAGCAGCGCCCGGGCAGTTCCCCCACCACTGTGATCTATGAGGATAACCAAAGACCCTCTGGGGTCCCTGATCGGTTCTCTGGCTCCATCGACAGCTCCTCCAACTCTGCCTCCCTCACCATCTCTGGACTGAAGACTGAGGACGAGGCTGACTACTACTGTCAGTCTTATGATAGCAGCANNNNTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
NFMLTQPHSVSESPGKTVTISCTRSSGSIASNYVQWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDSSIYVVFGGGTKLTVL
|
NFMLTQPHSVSESPGKTVTISCTRSSGSIASNYVQWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDSSXXVVFGGGTKLTVL
|
1
|
292
| null | null |
297
|
334
|
AATTTTATGCTGACTCAGCCCCACTCTGTGTCGGAGTCTCCGGGGAAGACGGTAACCATCTCCTGCACCCGCAGCAGTGGCAGCATTGCCAGCAACTATGTGCAGTGGTACCAGCAGCGCCCGGGCAGTTCCCCCACCACTGTGATCTATGAGGATAACCAAAGACCCTCTGGGGTCCCTGATCGGTTCTCTGGCTCCATCGACAGCTCCTCCAACTCTGCCTCCCTCACCATCTCTGGACTGAAGACTGAGGACGAGGCTGACTACTACTGTCAGTCTTATGATAGCAGCA
|
NFMLTQPHSVSESPGKTVTISCTRSSGSIASNYVQWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDSS
|
AATTTTATGCTGACTCAGCCCCACTCTGTGTCGGAGTCTCCGGGGAAGACGGTAACCATCTCCTGCACCCGCAGCAGTGGCAGCATTGCCAGCAACTATGTGCAGTGGTACCAGCAGCGCCCGGGCAGTTCCCCCACCACTGTGATCTATGAGGATAACCAAAGACCCTCTGGGGTCCCTGATCGGTTCTCTGGCTCCATCGACAGCTCCTCCAACTCTGCCTCCCTCACCATCTCTGGACTGAAGACTGAGGACGAGGCTGACTACTACTGTCAGTCTTATGATAGCAGCA
|
NFMLTQPHSVSESPGKTVTISCTRSSGSIASNYVQWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYCQSYDSS
| null | null | null | null |
TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
AATTTTATGCTGACTCAGCCCCACTCTGTGTCGGAGTCTCCGGGGAAGACGGTAACCATCTCCTGCACCCGCAGC
|
NFMLTQPHSVSESPGKTVTISCTRS
|
AGTGGCAGCATTGCCAGCAACTAT
|
SGSIASNY
|
GTGCAGTGGTACCAGCAGCGCCCGGGCAGTTCCCCCACCACTGTGATCTAT
|
VQWYQQRPGSSPTTVIY
|
GAGGATAAC
|
EDN
|
CAAAGACCCTCTGGGGTCCCTGATCGGTTCTCTGGCTCCATCGACAGCTCCTCCAACTCTGCCTCCCTCACCATCTCTGGACTGAAGACTGAGGACGAGGCTGACTACTACTGT
|
QRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGTCTTATGATAGCAGCATCTATGTGGTA
|
QSYDSSIYVV
|
TGTCAGTCTTATGATAGCAGCATCTATGTGGTATTC
|
36.0
|
CQSYDSSIYVVF
|
12.0
|
456.805
| null |
73.749
|
143S292M253S4N
| null |
439S38M211S
|
2.479e-130
| null |
4.234e-17
|
100.0
| null |
100.0
|
144
|
435
|
1
|
292
| null | null | null | null |
440
|
477
|
1
|
38
|
144
|
218
|
219
|
242
|
243
|
293
|
294
|
302
|
303
|
416
|
447.0
|
476.0
|
417.0
|
446.0
|
TCTA
|
4
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'N', '2 ': 'F', '3 ': 'M', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'H', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'E', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'K', '18 ': 'T', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'T', '25 ': 'R', '26 ': 'S'}, 'cdrl1': {'27 ': 'S', '28 ': 'G', '29 ': 'S', '30 ': 'I', '35 ': 'A', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwl2': {'39 ': 'V', '40 ': 'Q', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'R', '46 ': 'P', '47 ': 'G', '48 ': 'S', '49 ': 'S', '50 ': 'P', '51 ': 'T', '52 ': 'T', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'E', '57 ': 'D', '65 ': 'N'}, 'fwl3': {'66 ': 'Q', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'I', '81 ': 'D', '82 ': 'S', '83 ': 'S', '84 ': 'S', '85 ': 'N', '86 ': 'S', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'L', '95 ': 'K', '96 ': 'T', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'S', '107 ': 'Y', '108 ': 'D', '109 ': 'S', '113 ': 'S', '114 ': 'I', '115 ': 'Y', '116 ': 'V', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGTCCAAACAC-1_contig_2
|
AGCTCTCAGAGAGGTGCCTTAGCCCTGGATTCCAAGGCATTTCCACTTGGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTGGGGCTGTGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGTTATGAAATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGAGATCTAAGCAGCTCGTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-48*03
|
IGHD6-6*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGTTATGAAATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGAGATCTAAGCAGCTCGTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGTTATGAAATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGAGANNNNAGCAGCTCGTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYEMNWVRQAPGKGLEWVSYISSSGSTIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARDLSSSFDYWGQGTLVTVSS
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYEMNWVRQAPGKGLEWVSYISSSGSTIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARXXSSSFDYWGQGTLVTVSS
|
1
|
296
|
301.0
|
309.0
|
310
|
352
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGTTATGAAATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGAGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYEMNWVRQAPGKGLEWVSYISSSGSTIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGTTATGAAATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGAGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYEMNWVRQAPGKGLEWVSYISSSGSTIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
AGCAGCTCG
|
SSS
|
AGCAGCTCG
|
SSS
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTCAGTAGTTATGAA
|
GFTFSSYE
|
ATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATAC
|
MNWVRQAPGKGLEWVSY
|
ATTAGTAGTAGTGGTAGTACCATA
|
ISSSGSTI
|
TACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGT
|
YYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGATCTAAGCAGCTCGTTTGACTAC
|
ARDLSSSFDY
|
TGTGCGAGAGATCTAAGCAGCTCGTTTGACTACTGG
|
36.0
|
CARDLSSSFDYW
|
12.0
|
463.037
|
17.992
|
83.363
|
136S296M127S
|
436S6N9M114S3N
|
445S5N43M71S
|
2.6670000000000002e-132
|
0.9606
|
4.375e-20
|
100.0
|
100.0
|
100.0
|
137
|
432
|
1
|
296
|
437.0
|
445.0
|
7.0
|
15.0
|
446
|
488
|
6
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
455.0
|
487.0
|
425.0
|
454.0
|
TCTA
|
4
| null |
0.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'E'}, 'fwh2': {'39 ': 'M', '40 ': 'N', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'Y'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'S', '59 ': 'S', '62 ': 'G', '63 ': 'S', '64 ': 'T', '65 ': 'I'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'D', '108 ': 'L', '109 ': 'S', '113 ': 'S', '114 ': 'S', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGTCCAAACAC-1_contig_1
|
TGGGGGAGTCAGTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGGCTCCGAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCGAACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-39*01
| null |
IGKJ1*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCGAACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCNNACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPRTFGQGTKVEIK
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPXTFGQGTKVEIK
|
1
|
286
| null | null |
289
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTP
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTP
| null | null | null | null |
ACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
ACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGT
|
DIQMTQSPSSLSASVGDRVTITCRAS
|
CAGAGCATTAGCAGCTAT
|
QSISSY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LNWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAACAGAGTTACAGTACCCCTCGAACG
|
QQSYSTPRT
|
TGTCAACAGAGTTACAGTACCCCTCGAACGTTC
|
33.0
|
CQQSYSTPRTF
|
11.0
|
447.456
| null |
66.059
|
96S286M172S1N
| null |
384S4N34M136S
|
1.2949999999999999e-127
| null |
7.016e-15
|
100.0
| null |
100.0
|
97
|
382
|
1
|
286
| null | null | null | null |
385
|
418
|
5
|
38
|
97
|
174
|
175
|
192
|
193
|
243
|
244
|
252
|
253
|
360
|
388.0
|
417.0
|
361.0
|
387.0
|
GA
|
2
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'S', '108 ': 'Y', '109 ': 'S', '114 ': 'T', '115 ': 'P', '116 ': 'R', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGTCCTTTACA-1_contig_1
|
GCAGAGCCTGCTGAATTCTGGCTGACCAGGGCAGTCACCAGAGCTCCAGACAATGTCTGTCTCCTTCCTCATCTTCCTGCCCGTGCTGGGCCTCCCATGGGGTGTCCTGTCACAGGTACAGCTGCAGCAGTCAGGTCCAGGACTGGTGAAGCCCTCGCAGACCCTCTCACTCACCTGTGCCATCTCCGGGGACAGTGTCTCTAGCAACAGTGCTGCTTGGAACTGGATCAGGCAGTCCCCATCGAGAGGCCTTGAGTGGCTGGGAAGGACATACTACAGGTCCAAGTGGTATAATGATTATGCAGTATCTGTGAAAAGTCGAATAACCATCAACCCAGACACATCCAAGAACCAGTTCTCCCTGCAGCTGAACTCTGTGACTCCCGAGGACACGGCTGTGTATTACTGTGCAAGAGGCCGCAGAAGCGTACATTACTATGATAGTAGTGGTTATAGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV6-1*01
|
IGHD3-22*01
|
IGHJ3*02
|
CAGGTACAGCTGCAGCAGTCAGGTCCAGGACTGGTGAAGCCCTCGCAGACCCTCTCACTCACCTGTGCCATCTCCGGGGACAGTGTCTCTAGCAACAGTGCTGCTTGGAACTGGATCAGGCAGTCCCCATCGAGAGGCCTTGAGTGGCTGGGAAGGACATACTACAGGTCCAAGTGGTATAATGATTATGCAGTATCTGTGAAAAGTCGAATAACCATCAACCCAGACACATCCAAGAACCAGTTCTCCCTGCAGCTGAACTCTGTGACTCCCGAGGACACGGCTGTGTATTACTGTGCAAGAGGCCGCAGAAGCGTACATTACTATGATAGTAGTGGTTATAGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
CAGGTACAGCTGCAGCAGTCAGGTCCAGGACTGGTGAAGCCCTCGCAGACCCTCTCACTCACCTGTGCCATCTCCGGGGACAGTGTCTCTAGCAACAGTGCTGCTTGGAACTGGATCAGGCAGTCCCCATCGAGAGGCCTTGAGTGGCTGGGAAGGACATACTACAGGTCCAAGTGGTATAATGATTATGCAGTATCTGTGAAAAGTCGAATAACCATCAACCCAGACACATCCAAGAACCAGTTCTCCCTGCAGCTGAACTCTGTGACTCCCGAGGACACGGCTGTGTATTACTGTGCAAGAGNNNNNNNNNNNNNNNATTACTATGATAGTAGTGGTTATNNTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSNSAAWNWIRQSPSRGLEWLGRTYYRSKWYNDYAVSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYCARGRRSVHYYDSSGYSAFDIWGQGTMVTVSS
|
QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSNSAAWNWIRQSPSRGLEWLGRTYYRSKWYNDYAVSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYCARXXXXXXYYDSSGYXAFDIWGQGTMVTVSS
|
1
|
304
|
320.0
|
342.0
|
345
|
391
|
CAGGTACAGCTGCAGCAGTCAGGTCCAGGACTGGTGAAGCCCTCGCAGACCCTCTCACTCACCTGTGCCATCTCCGGGGACAGTGTCTCTAGCAACAGTGCTGCTTGGAACTGGATCAGGCAGTCCCCATCGAGAGGCCTTGAGTGGCTGGGAAGGACATACTACAGGTCCAAGTGGTATAATGATTATGCAGTATCTGTGAAAAGTCGAATAACCATCAACCCAGACACATCCAAGAACCAGTTCTCCCTGCAGCTGAACTCTGTGACTCCCGAGGACACGGCTGTGTATTACTGTGCAAGAG
|
QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSNSAAWNWIRQSPSRGLEWLGRTYYRSKWYNDYAVSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYCAR
|
CAGGTACAGCTGCAGCAGTCAGGTCCAGGACTGGTGAAGCCCTCGCAGACCCTCTCACTCACCTGTGCCATCTCCGGGGACAGTGTCTCTAGCAACAGTGCTGCTTGGAACTGGATCAGGCAGTCCCCATCGAGAGGCCTTGAGTGGCTGGGAAGGACATACTACAGGTCCAAGTGGTATAATGATTATGCAGTATCTGTGAAAAGTCGAATAACCATCAACCCAGACACATCCAAGAACCAGTTCTCCCTGCAGCTGAACTCTGTGACTCCCGAGGACACGGCTGTGTATTACTGTGCAAGAG
|
QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSNSAAWNWIRQSPSRGLEWLGRTYYRSKWYNDYAVSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYCAR
|
ATTACTATGATAGTAGTGGTTAT
|
YYDSSGY
|
ATTACTATGATAGTAGTGGTTAT
|
YYDSSGY
|
TGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
AFDIWGQGTMVTVSS
|
TGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
AFDIWGQGTMVTVSS
|
CAGGTACAGCTGCAGCAGTCAGGTCCAGGACTGGTGAAGCCCTCGCAGACCCTCTCACTCACCTGTGCCATCTCC
|
QVQLQQSGPGLVKPSQTLSLTCAIS
|
GGGGACAGTGTCTCTAGCAACAGTGCTGCT
|
GDSVSSNSAA
|
TGGAACTGGATCAGGCAGTCCCCATCGAGAGGCCTTGAGTGGCTGGGAAGG
|
WNWIRQSPSRGLEWLGR
|
ACATACTACAGGTCCAAGTGGTATAAT
|
TYYRSKWYN
|
GATTATGCAGTATCTGTGAAAAGTCGAATAACCATCAACCCAGACACATCCAAGAACCAGTTCTCCCTGCAGCTGAACTCTGTGACTCCCGAGGACACGGCTGTGTATTACTGT
|
DYAVSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
GCAAGAGGCCGCAGAAGCGTACATTACTATGATAGTAGTGGTTATAGTGCTTTTGATATC
|
ARGRRSVHYYDSSGYSAFDI
|
TGTGCAAGAGGCCGCAGAAGCGTACATTACTATGATAGTAGTGGTTATAGTGCTTTTGATATCTGG
|
66.0
|
CARGRRSVHYYDSSGYSAFDIW
|
22.0
|
475.502
|
44.909
|
91.054
|
112S304M158S1N
|
431S2N23M120S6N
|
456S3N47M71S
|
4.824e-136
|
7.785e-09
|
2.176e-22
|
100.0
|
100.0
|
100.0
|
113
|
416
|
1
|
304
|
432.0
|
454.0
|
3.0
|
25.0
|
457
|
503
|
4
|
50
|
113
|
187
|
188
|
217
|
218
|
268
|
269
|
295
|
296
|
409
|
470.0
|
502.0
|
410.0
|
469.0
|
GCCGCAGAAGCGTAC
|
15
|
AG
|
2.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'Q', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'A', '25 ': 'I', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'D', '29 ': 'S', '30 ': 'V', '31 ': 'S', '34 ': 'S', '35 ': 'N', '36 ': 'S', '37 ': 'A', '38 ': 'A'}, 'fwh2': {'39 ': 'W', '40 ': 'N', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'S', '46 ': 'P', '47 ': 'S', '48 ': 'R', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'L', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'T', '57 ': 'Y', '58 ': 'Y', '59 ': 'R', '60 ': 'S', '62 ': 'K', '63 ': 'W', '64 ': 'Y', '65 ': 'N'}, 'fwh3': {'66 ': 'D', '67 ': 'Y', '68 ': 'A', '69 ': 'V', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'I', '77 ': 'T', '78 ': 'I', '79 ': 'N', '80 ': 'P', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'Q', '91 ': 'L', '92 ': 'N', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'R', '109 ': 'R', '110 ': 'S', '111 ': 'V', '111A': 'H', '111B': 'Y', '111C': 'Y', '112D': 'D', '112C': 'S', '112B': 'S', '112A': 'G', '112 ': 'Y', '113 ': 'S', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGTCCTTTACA-1_contig_2
|
GGGGAGGAGTCAGTCCCAACCAGGACACAGCATGGACATGAGGGTCCCTGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCTCAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-33*01
| null |
IGKJ4*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPLTFGGGTKVEIK
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPLTFGGGTKVEIK
|
1
|
284
| null | null |
285
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLP
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLP
| null | null | null | null |
GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGT
|
DIQMTQSPSSLSASVGDRVTITCQAS
|
CAGGACATTAGCAACTAT
|
QDISNY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAC
|
LNWYQQKPGKAPKLLIY
|
GATGCATCC
|
DAS
|
AATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGT
|
NLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAACAGTATGATAATCTCCCGCTCACT
|
QQYDNLPLT
|
TGTCAACAGTATGATAATCTCCCGCTCACTTTC
|
33.0
|
CQQYDNLPLTF
|
11.0
|
444.34
| null |
73.749
|
97S284M174S3N
| null |
381S38M136S
|
1.125e-126
| null |
3.402e-17
|
100.0
| null |
100.0
|
98
|
381
|
1
|
284
| null | null | null | null |
382
|
419
|
1
|
38
|
98
|
175
|
176
|
193
|
194
|
244
|
245
|
253
|
254
|
361
|
389.0
|
418.0
|
362.0
|
388.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'Q', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'D', '29 ': 'I', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'L', '68 ': 'E', '69 ': 'T', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'F', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'I', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'D', '109 ': 'N', '114 ': 'L', '115 ': 'P', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGTCGAGAACG-1_contig_2
|
AGTGACTCCTGTGCCCCACCATGGACACACTTTGCTCCACGCTCCTGCTGCTGACCATCCCTTCATGGGTCTTGTCCCAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACACTGATCGGGTGGTAGCTGCCCCACTAGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV2-5*02
|
IGHD2-15*01
|
IGHJ5*02
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACACTGATCGGGTGGTAGCTGCCCCACTAGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACANNNNNNNGGTGGTAGCTGCNNNNNNNGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QITLKESGPTLVKPTQTLTLTCTFSGFSLSTSGVGVGWIRQPPGKALEWLALIYWDDDKRYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCAHTDRVVAAPLDPWGQGTLVTVSS
|
QITLKESGPTLVKPTQTLTLTCTFSGFSLSTSGVGVGWIRQPPGKALEWLALIYWDDDKRYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCAHXXXVVAAXXDPWGQGTLVTVSS
|
1
|
298
|
306.0
|
317.0
|
325
|
364
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACA
|
QITLKESGPTLVKPTQTLTLTCTFSGFSLSTSGVGVGWIRQPPGKALEWLALIYWDDDKRYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCAH
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACA
|
QITLKESGPTLVKPTQTLTLTCTFSGFSLSTSGVGVGWIRQPPGKALEWLALIYWDDDKRYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCAH
|
GGTGGTAGCTGC
|
VVAA
|
GGTGGTAGCTGC
|
VVAA
|
GACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DPWGQGTLVTVSS
|
GACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DPWGQGTLVTVSS
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCT
|
QITLKESGPTLVKPTQTLTLTCTFS
|
GGGTTCTCACTCAGCACTAGTGGAGTGGGT
|
GFSLSTSGVG
|
GTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTC
|
VGWIRQPPGKALEWLAL
|
ATTTATTGGGATGATGATAAG
|
IYWDDDK
|
CGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGT
|
RYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCACACACTGATCGGGTGGTAGCTGCCCCACTAGACCCC
|
AHTDRVVAAPLDP
|
TGTGCACACACTGATCGGGTGGTAGCTGCCCCACTAGACCCCTGG
|
45.0
|
CAHTDRVVAAPLDPW
|
15.0
|
466.153
|
23.76
|
77.595
|
77S298M137S3N
|
382S13N12M118S6N
|
401S11N40M71S
|
2.8039999999999997e-133
|
0.01612
|
2.18e-18
|
100.0
|
100.0
|
100.0
|
78
|
375
|
1
|
298
|
383.0
|
394.0
|
14.0
|
25.0
|
402
|
441
|
12
|
51
|
78
|
152
|
153
|
182
|
183
|
233
|
234
|
254
|
255
|
368
|
408.0
|
440.0
|
369.0
|
407.0
|
CTGATCG
|
7
|
CCCACTA
|
7.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'I', '3 ': 'T', '4 ': 'L', '5 ': 'K', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'T', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'T', '17 ': 'Q', '18 ': 'T', '19 ': 'L', '20 ': 'T', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'F', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'S', '30 ': 'L', '31 ': 'S', '34 ': 'T', '35 ': 'S', '36 ': 'G', '37 ': 'V', '38 ': 'G'}, 'fwh2': {'39 ': 'V', '40 ': 'G', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'L', '54 ': 'A', '55 ': 'L'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'W', '59 ': 'D', '63 ': 'D', '64 ': 'D', '65 ': 'K'}, 'fwh3': {'66 ': 'R', '67 ': 'Y', '68 ': 'S', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'L', '77 ': 'T', '78 ': 'I', '79 ': 'T', '80 ': 'K', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'V', '88 ': 'V', '89 ': 'L', '90 ': 'T', '91 ': 'M', '92 ': 'T', '93 ': 'N', '94 ': 'M', '95 ': 'D', '96 ': 'P', '97 ': 'V', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'H', '107 ': 'T', '108 ': 'D', '109 ': 'R', '110 ': 'V', '111 ': 'V', '112 ': 'A', '113 ': 'A', '114 ': 'P', '115 ': 'L', '116 ': 'D', '117 ': 'P'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGTCGAGAACG-1_contig_1
|
GGGAGTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGGCTCCGAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTGGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-39*01
| null |
IGKJ1*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTGGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTNGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPGTFGQGTKVEIK
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPXTFGQGTKVEIK
|
1
|
285
| null | null |
287
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCT
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTP
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCT
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTP
| null | null | null | null |
GGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
GGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGT
|
DIQMTQSPSSLSASVGDRVTITCRAS
|
CAGAGCATTAGCAGCTAT
|
QSISSY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LNWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAACAGAGTTACAGTACCCCTGGGACG
|
QQSYSTPGT
|
TGTCAACAGAGTTACAGTACCCCTGGGACGTTC
|
33.0
|
CQQSYSTPGTF
|
11.0
|
445.898
| null |
69.904
|
89S285M173S2N
| null |
375S2N36M136S
|
3.763e-127
| null |
4.818e-16
|
100.0
| null |
100.0
|
90
|
374
|
1
|
285
| null | null | null | null |
376
|
411
|
3
|
38
|
90
|
167
|
168
|
185
|
186
|
236
|
237
|
245
|
246
|
353
|
381.0
|
410.0
|
354.0
|
380.0
|
G
|
1
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'S', '108 ': 'Y', '109 ': 'S', '114 ': 'T', '115 ': 'P', '116 ': 'G', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAACGGGTCGTCACGG-1_contig_1
|
CGAGCCCAGCACTGGAAGTCGCCGGTGTTTCCATTCGGTGATCATCACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTCCTCGTTGCTCTTTTAAGAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGAGGGATGTAGTAGTACCAGCTGCTATGAACTAATGCCAAAGGCCAAGGGGGACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-30-3*01
|
IGHD2-2*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGAGGGATGTAGTAGTACCAGCTGCTATGAACTAATGCCAAAGGCCAAGGGGGACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGANNNNTGTAGTAGTACCAGCTGCTATGNNNNNNNNNNNNNNNNNNNNNNNNACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREGCSSTSCYELMPKAKGDYFDYWGQGTLVTVSS
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARXXCSSTSCYXXXXXXXXXYFDYWGQGTLVTVSS
|
1
|
296
|
301.0
|
322.0
|
347
|
394
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
TGTAGTAGTACCAGCTGCTATG
|
CSSTSCY
|
TGTAGTAGTACCAGCTGCTATG
|
CSSTSCY
|
ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YFDYWGQGTLVTVSS
|
ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YFDYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
QVQLVESGGGVVQPGRSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATGCT
|
GFTFSSYA
|
ATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTT
|
MHWVRQAPGKGLEWVAV
|
ATATCATATGATGGAAGCAATAAA
|
ISYDGSNK
|
TACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGAGGGATGTAGTAGTACCAGCTGCTATGAACTAATGCCAAAGGCCAAGGGGGACTACTTTGACTAC
|
AREGCSSTSCYELMPKAKGDYFDY
|
TGTGCGAGAGAGGGATGTAGTAGTACCAGCTGCTATGAACTAATGCCAAAGGCCAAGGGGGACTACTTTGACTACTGG
|
78.0
|
CAREGCSSTSCYELMPKAKGDYFDYW
|
26.0
|
463.037
|
42.986
|
92.976
|
124S296M169S
|
424S7N22M143S2N
|
470S48M71S
|
2.802e-132
|
3.03e-08
|
5.891e-23
|
100.0
|
100.0
|
100.0
|
125
|
420
|
1
|
296
|
425.0
|
446.0
|
8.0
|
29.0
|
471
|
518
|
1
|
48
|
125
|
199
|
200
|
223
|
224
|
274
|
275
|
298
|
299
|
412
|
485.0
|
517.0
|
413.0
|
484.0
|
GGGA
|
4
|
AACTAATGCCAAAGGCCAAGGGGG
|
24.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'V', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'Y', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'N', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'E', '108 ': 'G', '109 ': 'C', '110 ': 'S', '111 ': 'S', '111A': 'T', '111B': 'S', '111C': 'C', '111D': 'Y', '111E': 'E', '112F': 'L', '112E': 'M', '112D': 'P', '112C': 'K', '112B': 'A', '112A': 'K', '112 ': 'G', '113 ': 'D', '114 ': 'Y', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAACGGGTCGTCACGG-1_contig_2
|
GGAGTCAGTCCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCCCAGGTGCCAGATGTGACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCGTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-9*01
| null |
IGKJ4*01
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCGTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCNTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSYRFGGGTKVEIK
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSYXFGGGTKVEIK
|
1
|
283
| null | null |
285
|
316
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACC
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSY
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACC
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSY
| null | null | null | null |
TTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
FGGGTKVEIK
|
TTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
FGGGTKVEIK
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGT
|
DIQLTQSPSFLSASVGDRVTITCRAS
|
CAGGGCATTAGCAGTTAT
|
QGISSY
|
TTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LAWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
ACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGT
|
TLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAACAGCTTAATAGTTACCGT
|
QQLNSYR
|
TGTCAACAGCTTAATAGTTACCGTTTC
|
27.0
|
CQQLNSYRF
|
9.0
|
442.782
| null |
62.213
|
92S283M169S4N
| null |
376S6N32M136S
|
3.244e-126
| null |
9.899e-14
|
100.0
| null |
100.0
|
93
|
375
|
1
|
283
| null | null | null | null |
377
|
408
|
7
|
38
|
93
|
170
|
171
|
188
|
189
|
239
|
240
|
248
|
249
|
356
|
378.0
|
407.0
|
357.0
|
377.0
|
G
|
1
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'F', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'G', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'L', '108 ': 'N', '115 ': 'S', '116 ': 'Y', '117 ': 'R'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGAGAAGGTTT-1_contig_2
|
CTTATCTGGGGAGCTCTGGGAGAGGAGCCCCAGCCCTGAGATTCCCAGGTGTTTCCATTCAGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTGGGACTGAGCTGGATTTTCCTTTTGGCTATTTTAAAAGGTGTCCAGTGTGAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATGTGGAGCTAGTTGGGTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-9*01
|
IGHD1-26*01
|
IGHJ6*02
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATGTGGAGCTAGTTGGGTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATNNGGAGCTANNNNNNTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKDVELVGYGMDVWGQGTTVTVSS
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKDXELXXYGMDVWGQGTTVTVSS
|
1
|
297
|
300.0
|
306.0
|
313
|
360
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGAT
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKD
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGAT
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKD
|
GGAGCTA
|
EL
|
GGAGCTA
|
EL
|
TACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YGMDVWGQGTTVTVSS
|
TACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YGMDVWGQGTTVTVSS
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGRSLRLSCAAS
|
GGATTCACCTTTGATGATTATGCC
|
GFTFDDYA
|
ATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGT
|
MHWVRQAPGKGLEWVSG
|
ATTAGTTGGAATAGTGGTAGCATA
|
ISWNSGSI
|
GGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGT
|
GYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCAAAAGATGTGGAGCTAGTTGGGTACGGTATGGACGTC
|
AKDVELVGYGMDV
|
TGTGCAAAAGATGTGGAGCTAGTTGGGTACGGTATGGACGTCTGG
|
45.0
|
CAKDVELVGYGMDVW
|
15.0
|
464.595
|
14.146
|
92.976
|
148S297M135S1N
|
447S9N7M126S4N
|
460S14N48M72S
|
9.362999999999999e-133
|
14.34
|
5.799e-23
|
100.0
|
100.0
|
100.0
|
149
|
445
|
1
|
297
|
448.0
|
454.0
|
10.0
|
16.0
|
461
|
508
|
15
|
62
|
149
|
223
|
224
|
247
|
248
|
298
|
299
|
322
|
323
|
436
|
476.0
|
508.0
|
437.0
|
475.0
|
GT
|
2
|
GTTGGG
|
6.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'D', '36 ': 'D', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'G'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'W', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'I'}, 'fwh3': {'66 ': 'G', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'L', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'D', '108 ': 'V', '109 ': 'E', '110 ': 'L', '111 ': 'V', '112 ': 'G', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGAGAAGGTTT-1_contig_1
|
GGGAGAGCCCTGGGGAGGAACTGCTCAGTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACCGGAGAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-11*01
| null |
IGKJ5*01
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPITFGQGTRLEIK
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPITFGQGTRLEIK
|
1
|
284
| null | null |
285
|
322
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWP
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWP
| null | null | null | null |
GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVLTQSPATLSLSPGERATLSCRAS
|
CAGAGTGTTAGCAGCTAC
|
QSVSSY
|
TTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GATGCATCC
|
DAS
|
AACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGT
|
NRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYC
|
TTCGGCCAAGGGACACGACTGGAGATTAAA
|
FGQGTRLEIK
|
CAGCAGCGTAGCAACTGGCCGATCACC
|
QQRSNWPIT
|
TGTCAGCAGCGTAGCAACTGGCCGATCACCTTC
|
33.0
|
CQQRSNWPITF
|
11.0
|
444.34
| null |
73.749
|
107S284M174S3N
| null |
391S38M136S
|
1.147e-126
| null |
3.465e-17
|
100.0
| null |
100.0
|
108
|
391
|
1
|
284
| null | null | null | null |
392
|
429
|
1
|
38
|
108
|
185
|
186
|
203
|
204
|
254
|
255
|
263
|
264
|
371
|
399.0
|
428.0
|
372.0
|
398.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'A', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'L', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'A', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'E', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'R', '108 ': 'S', '109 ': 'N', '114 ': 'W', '115 ': 'P', '116 ': 'I', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'R', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGAGACACTAA-1_contig_1
|
GGGAGCATCACCCAGCAACCACATCTGTCCTCTAGAGAATCCCCTGAGAGCTCCGTTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCCACAGGAGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGCGGTGAGCGGATATTGTAGTGGTGGTAGCTGCTACCACGCCATAAAGGAAGCGGGGGGCCTGTACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-2*06
|
IGHD2-15*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGCGGTGAGCGGATATTGTAGTGGTGGTAGCTGCTACCACGCCATAAAGGAAGCGGGGGGCCTGTACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGNNNNNNNNGGATATTGTAGTGGTGGTAGCTGCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARAVSGYCSGGSCYHAIKEAGGLYYFDYWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARXXXGYCSGGSCYXXXXXXXXXXYFDYWGQGTLVTVSS
|
1
|
295
|
304.0
|
330.0
|
359
|
406
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
GGATATTGTAGTGGTGGTAGCTGCTAC
|
GYCSGGSCY
|
GGATATTGTAGTGGTGGTAGCTGCTAC
|
GYCSGGSCY
|
ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YFDYWGQGTLVTVSS
|
ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YFDYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCGGCTACTAT
|
GYTFTGYY
|
ATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGG
|
MHWVRQAPGQGLEWMGR
|
ATCAACCCTAACAGTGGTGGCACA
|
INPNSGGT
|
AACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGCGGTGAGCGGATATTGTAGTGGTGGTAGCTGCTACCACGCCATAAAGGAAGCGGGGGGCCTGTACTACTTTGACTAC
|
ARAVSGYCSGGSCYHAIKEAGGLYYFDY
|
TGTGCGAGAGCGGTGAGCGGATATTGTAGTGGTGGTAGCTGCTACCACGCCATAAAGGAAGCGGGGGGCCTGTACTACTTTGACTACTGG
|
90.0
|
CARAVSGYCSGGSCYHAIKEAGGLYYFDYW
|
30.0
|
461.479
|
52.6
|
92.976
|
121S295M182S1N
|
424S1N27M147S3N
|
479S48M71S
|
8.384000000000001e-132
|
3.928e-11
|
5.983e-23
|
100.0
|
100.0
|
100.0
|
122
|
416
|
1
|
295
|
425.0
|
451.0
|
2.0
|
28.0
|
480
|
527
|
1
|
48
|
122
|
196
|
197
|
220
|
221
|
271
|
272
|
295
|
296
|
409
|
494.0
|
526.0
|
410.0
|
493.0
|
CGGTGAGC
|
8
|
CACGCCATAAAGGAAGCGGGGGGCCTGT
|
28.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'G', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'G', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'R', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'D', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'A', '108 ': 'V', '109 ': 'S', '110 ': 'G', '111 ': 'Y', '111A': 'C', '111B': 'S', '111C': 'G', '111D': 'G', '111E': 'S', '111F': 'C', '111G': 'Y', '112H': 'H', '112G': 'A', '112F': 'I', '112E': 'K', '112D': 'E', '112C': 'A', '112B': 'G', '112A': 'G', '112 ': 'L', '113 ': 'Y', '114 ': 'Y', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGAGACACTAA-1_contig_2
|
GCTCTGCTTCAGCTGTGGGCACAAGAGGCAGCACTCAGGACAATCTCCAGCATGGCCTGGTCTCCTCTCCTCCTCACTCTCCTCGCTCACTGCACAGGGTCCTGGGCCCAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGACCGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV1-40*01
| null |
IGLJ3*02
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGACCGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGANNGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLTVFGGGTKLTVL
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLXVFGGGTKLTVL
|
1
|
292
| null | null |
295
|
328
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGA
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSL
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGA
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSL
| null | null | null | null |
GTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
GTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGC
|
QSVLTQPPSVSGAPGQRVTISCTGS
|
AGCTCCAACATCGGGGCAGGTTATGAT
|
SSNIGAGYD
|
GTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTAT
|
VHWYQQLPGTAPKLLIY
|
GGTAACAGC
|
GNS
|
AATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGC
|
NRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGTCCTATGACAGCAGCCTGACCGTG
|
QSYDSSLTV
|
TGCCAGTCCTATGACAGCAGCCTGACCGTGTTC
|
33.0
|
CQSYDSSLTVF
|
11.0
|
456.805
| null |
66.059
|
108S292M247S7N
| null |
402S4N34M211S
|
2.3249999999999998e-130
| null |
8.218e-15
|
100.0
| null |
100.0
|
109
|
400
|
1
|
292
| null | null | null | null |
403
|
436
|
5
|
38
|
109
|
183
|
184
|
210
|
211
|
261
|
262
|
270
|
271
|
378
|
406.0
|
435.0
|
379.0
|
405.0
|
CC
|
2
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'G', '14 ': 'A', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'T', '25 ': 'G', '26 ': 'S'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'N', '30 ': 'I', '31 ': 'G', '35 ': 'A', '36 ': 'G', '37 ': 'Y', '38 ': 'D'}, 'fwl2': {'39 ': 'V', '40 ': 'H', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'L', '46 ': 'P', '47 ': 'G', '48 ': 'T', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'G', '57 ': 'N', '65 ': 'S'}, 'fwl3': {'66 ': 'N', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'S', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'A', '91 ': 'I', '92 ': 'T', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'S', '107 ': 'Y', '108 ': 'D', '109 ': 'S', '114 ': 'S', '115 ': 'L', '116 ': 'T', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGAGACTGGGT-1_contig_1
|
CCACATCCCTCCTCAGAAGCCCCCAGAGCACAACTCCTTACCATGGACTGGACCTGGAGGATCCTCTTTTTGGTGGCAGCAGCCACAGGTGCCCACTCCCAGGTCCAGCTTGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCTTCTGGATACACCTTCACTAGCTATGCTATGCATTGGGTGCGCCAGGCCCCCGGACAAAGGCTTGAGTGGATGGGATGGATCAACGCTGGCAATGGTAACACAAAATATTCACAGAAGTTCCAGGGCAGAGTCACCATTACCAGGGACACATCCGCGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAAGACACGGCTGTGTATTACTGTGCGAGAGATGAGGGCGGCTACGGCGCCCTTTTCTGGTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-3*01
|
IGHD6-25*01
|
IGHJ6*02
|
CAGGTCCAGCTTGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCTTCTGGATACACCTTCACTAGCTATGCTATGCATTGGGTGCGCCAGGCCCCCGGACAAAGGCTTGAGTGGATGGGATGGATCAACGCTGGCAATGGTAACACAAAATATTCACAGAAGTTCCAGGGCAGAGTCACCATTACCAGGGACACATCCGCGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAAGACACGGCTGTGTATTACTGTGCGAGAGATGAGGGCGGCTACGGCGCCCTTTTCTGGTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTCCAGCTTGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCTTCTGGATACACCTTCACTAGCTATGCTATGCATTGGGTGCGCCAGGCCCCCGGACAAAGGCTTGAGTGGATGGGATGGATCAACGCTGGCAATGGTAACACAAAATATTCACAGAAGTTCCAGGGCAGAGTCACCATTACCAGGGACACATCCGCGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAAGACACGGCTGTGTATTACTGTGCGAGAGANNNNNGCGGCTACNNNNNNNNNNNNNNNTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRVTITRDTSASTAYMELSSLRSEDTAVYYCARDEGGYGALFWYYGMDVWGQGTTVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRVTITRDTSASTAYMELSSLRSEDTAVYYCARXXXGYXXXXXYYGMDVWGQGTTVTVSS
|
1
|
296
|
302.0
|
309.0
|
325
|
375
|
CAGGTCCAGCTTGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCTTCTGGATACACCTTCACTAGCTATGCTATGCATTGGGTGCGCCAGGCCCCCGGACAAAGGCTTGAGTGGATGGGATGGATCAACGCTGGCAATGGTAACACAAAATATTCACAGAAGTTCCAGGGCAGAGTCACCATTACCAGGGACACATCCGCGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAAGACACGGCTGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRVTITRDTSASTAYMELSSLRSEDTAVYYCAR
|
CAGGTCCAGCTTGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCTTCTGGATACACCTTCACTAGCTATGCTATGCATTGGGTGCGCCAGGCCCCCGGACAAAGGCTTGAGTGGATGGGATGGATCAACGCTGGCAATGGTAACACAAAATATTCACAGAAGTTCCAGGGCAGAGTCACCATTACCAGGGACACATCCGCGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAAGACACGGCTGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYAMHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRVTITRDTSASTAYMELSSLRSEDTAVYYCAR
|
GCGGCTAC
|
GY
|
GCGGCTAC
|
GY
|
TACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYGMDVWGQGTTVTVSS
|
TACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYGMDVWGQGTTVTVSS
|
CAGGTCCAGCTTGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACTAGCTATGCT
|
GYTFTSYA
|
ATGCATTGGGTGCGCCAGGCCCCCGGACAAAGGCTTGAGTGGATGGGATGG
|
MHWVRQAPGQRLEWMGW
|
ATCAACGCTGGCAATGGTAACACA
|
INAGNGNT
|
AAATATTCACAGAAGTTCCAGGGCAGAGTCACCATTACCAGGGACACATCCGCGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAAGACACGGCTGTGTATTACTGT
|
KYSQKFQGRVTITRDTSASTAYMELSSLRSEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAGAGATGAGGGCGGCTACGGCGCCCTTTTCTGGTACTACGGTATGGACGTC
|
ARDEGGYGALFWYYGMDV
|
TGTGCGAGAGATGAGGGCGGCTACGGCGCCCTTTTCTGGTACTACGGTATGGACGTCTGG
|
60.0
|
CARDEGGYGALFWYYGMDVW
|
20.0
|
463.037
|
16.069
|
98.744
|
99S296M151S
|
400S10N8M138S
|
423S11N51M72S
|
2.602e-132
|
3.556
|
1.001e-24
|
100.0
|
100.0
|
100.0
|
100
|
395
|
1
|
296
|
401.0
|
408.0
|
11.0
|
18.0
|
424
|
474
|
12
|
62
|
100
|
174
|
175
|
198
|
199
|
249
|
250
|
273
|
274
|
387
|
442.0
|
474.0
|
388.0
|
441.0
|
TGAGG
|
5
|
GGCGCCCTTTTCTGG
|
15.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'R', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'A', '59 ': 'G', '62 ': 'N', '63 ': 'G', '64 ': 'N', '65 ': 'T'}, 'fwh3': {'66 ': 'K', '67 ': 'Y', '68 ': 'S', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'A', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'D', '108 ': 'E', '109 ': 'G', '110 ': 'G', '111 ': 'Y', '111A': 'G', '111B': 'A', '112C': 'L', '112B': 'F', '112A': 'W', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGAGACTGGGT-1_contig_2
|
AGAGCCCTGGGGAGGAACTGCTCAGTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACCGGAGAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCCCTATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-11*01
| null |
IGKJ3*01
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCCCTATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCNNNATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPPLFTFGPGTKVDIK
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPPXFTFGPGTKVDIK
|
1
|
287
| null | null |
291
|
328
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPP
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPP
| null | null | null | null |
ATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
FTFGPGTKVDIK
|
ATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
FTFGPGTKVDIK
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVLTQSPATLSLSPGERATLSCRAS
|
CAGAGTGTTAGCAGCTAC
|
QSVSSY
|
TTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GATGCATCC
|
DAS
|
AACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGT
|
NRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYC
|
TTCGGCCCTGGGACCAAAGTGGATATCAAA
|
FGPGTKVDIK
|
CAGCAGCGTAGCAACTGGCCTCCCCTATTCACT
|
QQRSNWPPLFT
|
TGTCAGCAGCGTAGCAACTGGCCTCCCCTATTCACTTTC
|
39.0
|
CQQRSNWPPLFTF
|
13.0
|
449.014
| null |
73.749
|
104S287M177S
| null |
394S38M136S
|
4.515e-128
| null |
3.483e-17
|
100.0
| null |
100.0
|
105
|
391
|
1
|
287
| null | null | null | null |
395
|
432
|
1
|
38
|
105
|
182
|
183
|
200
|
201
|
251
|
252
|
260
|
261
|
368
|
402.0
|
431.0
|
369.0
|
401.0
|
CCT
|
3
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'A', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'L', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'A', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'E', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'R', '108 ': 'S', '109 ': 'N', '110 ': 'W', '113 ': 'P', '114 ': 'P', '115 ': 'L', '116 ': 'F', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'P', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'D', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGAGCCCGAAA-1_contig_1
|
AGGTCTCAGAGAGGAGCCTTAGCCCTGGACTCCAAGGCCTTTCCACTTGGTGATCAGCACTGAGCACAGAGGACTCACCATGGAATTGGGGCTGAGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGGGACCTCGATAGTAGTGGTTATTATAGCGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-7*01
|
IGHD3-22*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGGGACCTCGATAGTAGTGGTTATTATAGCGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGANNNNGATAGTAGTGGTTATTANNNNGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARDLDSSGYYSDYWGQGTLVTVSS
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARXXDSSGYXXDYWGQGTLVTVSS
|
1
|
296
|
301.0
|
317.0
|
322
|
361
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGGGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
GATAGTAGTGGTTATTA
|
DSSGY
|
GATAGTAGTGGTTATTA
|
DSSGY
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTTAGTAGCTATTGG
|
GFTFSSYW
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAAC
|
MSWVRQAPGKGLEWVAN
|
ATAAAGCAAGATGGAAGTGAGAAA
|
IKQDGSEK
|
TACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGT
|
YYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGGGACCTCGATAGTAGTGGTTATTATAGCGACTAC
|
ARDLDSSGYYSDY
|
TGTGCGAGGGACCTCGATAGTAGTGGTTATTATAGCGACTACTGG
|
45.0
|
CARDLDSSGYYSDYW
|
15.0
|
459.921
|
33.373
|
77.595
|
136S296M136S
|
436S10N17M115S4N
|
457S8N40M71S
|
2.352e-131
|
2.287e-05
|
2.423e-18
|
99.662
|
100.0
|
100.0
|
137
|
432
|
1
|
296
|
437.0
|
453.0
|
11.0
|
27.0
|
458
|
497
|
9
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
464.0
|
496.0
|
425.0
|
463.0
|
CCTC
|
4
|
TAGC
|
4.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'W'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'N'}, 'cdrh2': {'56 ': 'I', '57 ': 'K', '58 ': 'Q', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'E', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'V', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'D', '108 ': 'L', '109 ': 'D', '110 ': 'S', '111 ': 'S', '112 ': 'G', '113 ': 'Y', '114 ': 'Y', '115 ': 'S', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGAGCCCGAAA-1_contig_2
|
CTGGGCCTCAGGAAGCAGCATCGGAGGTGCCTCAGCCATGGCATGGATCCCTCTCTTCCTCGGCGTCCTTGCTTACTGCACAGGTTCCGTGGCCTCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTCGAGGGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-1*01
| null |
IGLJ2*01
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTCGAGGGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTNNNNNGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTRGVFGGGTKLTVL
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTXXVFGGGTKLTVL
|
1
|
282
| null | null |
288
|
322
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACT
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSST
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACT
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSST
| null | null | null | null |
GGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
GGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGAT
|
SYELTQPPSVSVSPGQTASITCSGD
|
AAATTGGGGGATAAATAT
|
KLGDKY
|
GCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTAT
|
ACWYQQKPGQSPVLVIY
|
CAAGATAGC
|
QDS
|
AAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGT
|
KRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGGCGTGGGACAGCAGCACTCGAGGGGTA
|
QAWDSSTRGV
|
TGTCAGGCGTGGGACAGCAGCACTCGAGGGGTATTC
|
36.0
|
CQAWDSSTRGVF
|
12.0
|
441.224
| null |
67.981
|
94S282M251S3N
| null |
381S3N35M211S
|
1.1029999999999999e-125
| null |
2.099e-15
|
100.0
| null |
100.0
|
95
|
376
|
1
|
282
| null | null | null | null |
382
|
416
|
4
|
38
|
95
|
169
|
170
|
187
|
188
|
238
|
239
|
247
|
248
|
355
|
386.0
|
415.0
|
356.0
|
385.0
|
CGAGG
|
5
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'E', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'D'}, 'cdrl1': {'27 ': 'K', '28 ': 'L', '29 ': 'G', '36 ': 'D', '37 ': 'K', '38 ': 'Y'}, 'fwl2': {'39 ': 'A', '40 ': 'C', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'S', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'Q', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'N', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'T', '95 ': 'Q', '96 ': 'A', '97 ': 'M', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'A', '107 ': 'W', '108 ': 'D', '109 ': 'S', '113 ': 'S', '114 ': 'T', '115 ': 'R', '116 ': 'G', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGAGTGACATA-1_contig_1
|
CGAGCCCAGCACTGGAAGTCGCCGGTGTTTCCATTCGGTGATCATCACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTCCTCGTTGCTCTTTTAAGAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGGACGTGGTGGATCGGGGTTGGAGGTAGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-30-3*01
|
IGHD3-10*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGGACGTGGTGGATCGGGGTTGGAGGTAGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGNNNNNNNTGGTTCGGGGNNNNNNNNNGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGRGGSGLEVDYWGQGTLVTVSS
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARXXXGSGXXXDYWGQGTLVTVSS
|
1
|
295
|
303.0
|
312.0
|
322
|
361
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
TGGATCGGGG
|
GSG
|
TGGTTCGGGG
|
GSG
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
QVQLVESGGGVVQPGRSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATGCT
|
GFTFSSYA
|
ATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTT
|
MHWVRQAPGKGLEWVAV
|
ATATCATATGATGGAAGCAATAAA
|
ISYDGSNK
|
TACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGGACGTGGTGGATCGGGGTTGGAGGTAGACTAC
|
ARGRGGSGLEVDY
|
TGTGCGAGAGGACGTGGTGGATCGGGGTTGGAGGTAGACTACTGG
|
45.0
|
CARGRGGSGLEVDYW
|
15.0
|
461.479
|
14.146
|
77.595
|
124S295M137S1N
|
426S9N10M120S12N
|
445S8N40M71S
|
7.810000000000001e-132
|
13.73
|
2.371e-18
|
100.0
|
90.0
|
100.0
|
125
|
419
|
1
|
295
|
427.0
|
436.0
|
10.0
|
19.0
|
446
|
485
|
9
|
48
|
125
|
199
|
200
|
223
|
224
|
274
|
275
|
298
|
299
|
412
|
452.0
|
484.0
|
413.0
|
451.0
|
GACGTGG
|
7
|
TTGGAGGTA
|
9.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'V', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'Y', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'N', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'R', '109 ': 'G', '110 ': 'G', '111 ': 'S', '112 ': 'G', '113 ': 'L', '114 ': 'E', '115 ': 'V', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGAGTGACATA-1_contig_2
|
TGGGGAGGAGTCAGTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGGCTCCGAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCGGATCACTTTCGGCCCTGGGACCAAAGTGGATATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-39*01
| null |
IGKJ3*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCGGATCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCNNNTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTRITFGPGTKVDIK
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTXXTFGPGTKVDIK
|
1
|
283
| null | null |
287
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYST
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYST
| null | null | null | null |
TCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
TFGPGTKVDIK
|
TCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
TFGPGTKVDIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGT
|
DIQMTQSPSSLSASVGDRVTITCRAS
|
CAGAGCATTAGCAGCTAT
|
QSISSY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LNWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTCGGCCCTGGGACCAAAGTGGATATCAAA
|
FGPGTKVDIK
|
CAACAGAGTTACAGTACCCGGATCACT
|
QQSYSTRIT
|
TGTCAACAGAGTTACAGTACCCGGATCACTTTC
|
33.0
|
CQQSYSTRITF
|
11.0
|
442.782
| null |
69.904
|
98S283M175S4N
| null |
384S2N36M136S
|
3.3199999999999997e-126
| null |
4.899e-16
|
100.0
| null |
100.0
|
99
|
381
|
1
|
283
| null | null | null | null |
385
|
420
|
3
|
38
|
99
|
176
|
177
|
194
|
195
|
245
|
246
|
254
|
255
|
362
|
390.0
|
419.0
|
363.0
|
389.0
|
GGA
|
3
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'S', '108 ': 'Y', '109 ': 'S', '114 ': 'T', '115 ': 'R', '116 ': 'I', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'P', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'D', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGCACCATCCT-1_contig_1
|
ACTTTCTGAGAGTCCTGGACCTCCTGTGCAAGAACATGAAACATCTGTGGTTCTTCCTCCTCCTGGTGGCAGCTCCCAGATGGGTCCTGTCCCAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTAGTTACTACTGGAGCTGGATCCGGCAGCCCGCCGGGAAGGGACTGGAGTGGATTGGGCGTATCTATACCAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGACAGGTTATAGCAGCCGCGACCCTTGACTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-61*02
|
IGHD6-13*01
|
IGHJ2*01
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTAGTTACTACTGGAGCTGGATCCGGCAGCCCGCCGGGAAGGGACTGGAGTGGATTGGGCGTATCTATACCAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGACAGGTTATAGCAGCCGCGACCCTTGACTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTAGTTACTACTGGAGCTGGATCCGGCAGCCCGCCGGGAAGGGACTGGAGTGGATTGGGCGTATCTATACCAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGANNNNNTATAGCAGCNNNNNNNNNNNACTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGSYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARQVIAAATLDWYFDLWGRGTLVTVSS
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGSYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARXXIAAXXXXWYFDLWGRGTLVTVSS
|
1
|
297
|
303.0
|
311.0
|
323
|
373
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTAGTTACTACTGGAGCTGGATCCGGCAGCCCGCCGGGAAGGGACTGGAGTGGATTGGGCGTATCTATACCAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGA
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGSYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTAGTTACTACTGGAGCTGGATCCGGCAGCCCGCCGGGAAGGGACTGGAGTGGATTGGGCGTATCTATACCAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGA
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGSYYWSWIRQPAGKGLEWIGRIYTSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
TATAGCAGC
|
IAA
|
TATAGCAGC
|
IAA
|
ACTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG
|
WYFDLWGRGTLVTVSS
|
ACTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG
|
WYFDLWGRGTLVTVSS
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QVQLQESGPGLVKPSQTLSLTCTVS
|
GGTGGCTCCATCAGCAGTGGTAGTTACTAC
|
GGSISSGSYY
|
TGGAGCTGGATCCGGCAGCCCGCCGGGAAGGGACTGGAGTGGATTGGGCGT
|
WSWIRQPAGKGLEWIGR
|
ATCTATACCAGTGGGAGCACC
|
IYTSGST
|
AACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGT
|
NYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCGTGGCACCCTGGTCACTGTCTCCTCA
|
WGRGTLVTVSS
|
GCGAGACAGGTTATAGCAGCCGCGACCCTTGACTGGTACTTCGATCTC
|
ARQVIAAATLDWYFDL
|
TGTGCGAGACAGGTTATAGCAGCCGCGACCCTTGACTGGTACTTCGATCTCTGG
|
54.0
|
CARQVIAAATLDWYFDLW
|
18.0
|
464.595
|
17.992
|
98.744
|
92S297M147S2N
|
394S3N9M133S9N
|
414S2N51M71S
|
8.665e-133
|
0.9204
|
9.819e-25
|
100.0
|
100.0
|
100.0
|
93
|
389
|
1
|
297
|
395.0
|
403.0
|
4.0
|
12.0
|
415
|
465
|
3
|
53
|
93
|
167
|
168
|
197
|
198
|
248
|
249
|
269
|
270
|
383
|
432.0
|
464.0
|
384.0
|
431.0
|
CAGGT
|
5
|
CGCGACCCTTG
|
11.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'Q', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '34 ': 'S', '35 ': 'G', '36 ': 'S', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'S', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'A', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'T', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'Q', '108 ': 'V', '109 ': 'I', '110 ': 'A', '111 ': 'A', '111A': 'A', '112B': 'T', '112A': 'L', '112 ': 'D', '113 ': 'W', '114 ': 'Y', '115 ': 'F', '116 ': 'D', '117 ': 'L'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'R', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGCACCATCCT-1_contig_2
|
TGGGGGATCAGGACTCCTCAGTTCACCTTCTCACAATGAGGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCTCTGGGTCTCTGGATCCAGTGGGGATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACCCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV2-28*01
| null |
IGKJ2*01
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACCCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTPYTFGQGTKLEIK
|
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTPYTFGQGTKLEIK
|
1
|
299
| null | null |
300
|
337
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACCCC
|
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTP
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCC
|
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTP
| null | null | null | null |
GTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
GTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGT
|
DIVMTQSPLSLPVTPGEPASISCRSS
|
CAGAGCCTCCTGCATAGTAATGGATACAACTAT
|
QSLLHSNGYNY
|
TTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTAT
|
LDWYLQKPGQSPQLLIY
|
TTGGGTTCT
|
LGS
|
AATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGC
|
NRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC
|
TTTGGCCAGGGGACCAAGCTGGAGATCAAA
|
FGQGTKLEIK
|
ATGCAAGCTCTACAAACCCCGTACACT
|
MQALQTPYT
|
TGCATGCAAGCTCTACAAACCCCGTACACTTTT
|
33.0
|
CMQALQTPYTF
|
11.0
|
464.595
| null |
73.749
|
95S299M174S3N
| null |
394S1N38M136S
|
9.210999999999999e-133
| null |
3.483e-17
|
99.666
| null |
100.0
|
96
|
394
|
1
|
299
| null | null | null | null |
395
|
432
|
2
|
39
|
96
|
173
|
174
|
206
|
207
|
257
|
258
|
266
|
267
|
374
|
402.0
|
431.0
|
375.0
|
401.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'L', '10 ': 'S', '11 ': 'L', '12 ': 'P', '13 ': 'V', '14 ': 'T', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'P', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'S', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'L', '30 ': 'L', '31 ': 'H', '32 ': 'S', '34 ': 'N', '35 ': 'G', '36 ': 'Y', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'D', '41 ': 'W', '42 ': 'Y', '43 ': 'L', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'S', '50 ': 'P', '51 ': 'Q', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'L', '57 ': 'G', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'A', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'K', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'V', '95 ': 'E', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'V', '100 ': 'G', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'M', '106 ': 'Q', '107 ': 'A', '108 ': 'L', '109 ': 'Q', '114 ': 'T', '115 ': 'P', '116 ': 'Y', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGCAGATTGCT-1_contig_1
|
ATCACATAACAACCACATTCCTCCTCTAAAGAAGCCCCTGGGAGCACAGCTCATCACCATGGACTGGACCTGGAGGTTCCTCTTTGTGGTGGCAGCAGCTACAGGTGTCCAGTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGGAAGCTATTACTATGATAGTAGTGCCCCCTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-69*01
|
IGHD3-22*01
|
IGHJ6*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGGAAGCTATTACTATGATAGTAGTGCCCCCTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGNNNNNTATTACTATGATAGTAGTGNNNNCTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARGSYYYDSSAPYGMDVWGQGTTVTVSS
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARXXYYYDSSXXYGMDVWGQGTTVTVSS
|
1
|
295
|
301.0
|
319.0
|
324
|
372
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAR
|
TATTACTATGATAGTAGTG
|
YYYDSS
|
TATTACTATGATAGTAGTG
|
YYYDSS
|
CTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YGMDVWGQGTTVTVSS
|
CTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YGMDVWGQGTTVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGSSVKVSCKAS
|
GGAGGCACCTTCAGCAGCTATGCT
|
GGTFSSYA
|
ATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGG
|
ISWVRQAPGQGLEWMGG
|
ATCATCCCTATCTTTGGTACAGCA
|
IIPIFGTA
|
AACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAGAGGAAGCTATTACTATGATAGTAGTGCCCCCTACGGTATGGACGTC
|
ARGSYYYDSSAPYGMDV
|
TGTGCGAGAGGAAGCTATTACTATGATAGTAGTGCCCCCTACGGTATGGACGTCTGG
|
57.0
|
CARGSYYYDSSAPYGMDVW
|
19.0
|
461.479
|
37.218
|
94.899
|
115S295M149S1N
|
415S1N19M125S11N
|
438S13N49M72S
|
7.854e-132
|
1.566e-06
|
1.4729999999999998e-23
|
100.0
|
100.0
|
100.0
|
116
|
410
|
1
|
295
|
416.0
|
434.0
|
2.0
|
20.0
|
439
|
487
|
14
|
62
|
116
|
190
|
191
|
214
|
215
|
265
|
266
|
289
|
290
|
403
|
455.0
|
487.0
|
404.0
|
454.0
|
GAAGC
|
5
|
CCCC
|
4.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'S', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'I', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'G'}, 'cdrh2': {'56 ': 'I', '57 ': 'I', '58 ': 'P', '59 ': 'I', '62 ': 'F', '63 ': 'G', '64 ': 'T', '65 ': 'A'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'T', '80 ': 'A', '81 ': 'D', '82 ': 'E', '83 ': 'S', '84 ': 'T', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'S', '109 ': 'Y', '110 ': 'Y', '111 ': 'Y', '111A': 'D', '111B': 'S', '112B': 'S', '112A': 'A', '112 ': 'P', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGCAGATTGCT-1_contig_2
|
CTGGGCCTCAGGAAGCAGCATCGGAGGTGCCTCAGCCATGGCATGGATCCCTCTCTTCCTCGGCGTCCTTGCTTACTGCACAGGATCCGTGGCCTCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGCTCTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-1*01
| null |
IGLJ2*01
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGCTCTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGCNNTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTALFGGGTKLTVL
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTAXFGGGTKLTVL
|
1
|
284
| null | null |
287
|
319
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGC
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTA
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGC
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTA
| null | null | null | null |
TATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
FGGGTKLTVL
|
TATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
FGGGTKLTVL
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGAT
|
SYELTQPPSVSVSPGQTASITCSGD
|
AAATTGGGGGATAAATAT
|
KLGDKY
|
GCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTAT
|
ACWYQQKPGQSPVLVIY
|
CAAGATAGC
|
QDS
|
AAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGT
|
KRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGGCGTGGGACAGCAGCACTGCTCTA
|
QAWDSSTAL
|
TGTCAGGCGTGGGACAGCAGCACTGCTCTATTC
|
33.0
|
CQAWDSSTALF
|
11.0
|
444.34
| null |
64.136
|
94S284M246S1N
| null |
380S5N33M211S
|
1.266e-126
| null |
3.003e-14
|
100.0
| null |
100.0
|
95
|
378
|
1
|
284
| null | null | null | null |
381
|
413
|
6
|
38
|
95
|
169
|
170
|
187
|
188
|
238
|
239
|
247
|
248
|
355
|
383.0
|
412.0
|
356.0
|
382.0
|
TC
|
2
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'E', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'D'}, 'cdrl1': {'27 ': 'K', '28 ': 'L', '29 ': 'G', '36 ': 'D', '37 ': 'K', '38 ': 'Y'}, 'fwl2': {'39 ': 'A', '40 ': 'C', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'S', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'Q', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'N', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'T', '95 ': 'Q', '96 ': 'A', '97 ': 'M', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'A', '107 ': 'W', '108 ': 'D', '109 ': 'S', '114 ': 'S', '115 ': 'T', '116 ': 'A', '117 ': 'L'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGCATGTAGTC-1_contig_2
|
AGCTCTGAGAGAGGAGCCCAGCCCTGGGATTTTCAGGTGTTTTCATTTGGTGATCAGGACTGAACAGAGAGAACTCACCATGGAGTTTGGGCTGAGCTGGCTTTTTCTTGTGGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGCCTAAGAGCCCCACCCAGCAGCTGGCACCTACCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-23*01
|
IGHD6-13*01
|
IGHJ5*02
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGCCTAAGAGCCCCACCCAGCAGCTGGCACCTACCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGNNNNNNNNNNNNNNNCAGCAGCTGGNNNNNNCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAPKSPTQQLAPTWGQGTLVTVSS
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAXXXXXQQLXXXWGQGTLVTVSS
|
1
|
291
|
307.0
|
316.0
|
323
|
358
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCG
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCA
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCG
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCA
|
CAGCAGCTGG
|
QQL
|
CAGCAGCTGG
|
QQL
|
CCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WGQGTLVTVSS
|
CCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WGQGTLVTVSS
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLLESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTTAGCAGCTATGCC
|
GFTFSSYA
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCT
|
MSWVRQAPGKGLEWVSA
|
ATTAGTGGTAGTGGTGGTAGCACA
|
ISGSGGST
|
TACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGCCTAAGAGCCCCACCCAGCAGCTGGCACCTACC
|
APKSPTQQLAPT
|
TGTGCGCCTAAGAGCCCCACCCAGCAGCTGGCACCTACCTGG
|
42.0
|
CAPKSPTQQLAPTW
|
14.0
|
455.247
|
19.914
|
69.904
|
136S291M138S5N
|
442S8N10M113S3N
|
458S15N36M71S
|
5.972e-130
|
0.2561
|
4.98e-16
|
100.0
|
100.0
|
100.0
|
137
|
427
|
1
|
291
|
443.0
|
452.0
|
9.0
|
18.0
|
459
|
494
|
16
|
51
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
461.0
|
493.0
|
425.0
|
460.0
|
CCTAAGAGCCCCACC
|
15
|
CACCTA
|
6.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'L', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'A'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'G', '59 ': 'S', '62 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'P', '107 ': 'K', '108 ': 'S', '109 ': 'P', '110 ': 'T', '112 ': 'Q', '113 ': 'Q', '114 ': 'L', '115 ': 'A', '116 ': 'P', '117 ': 'T'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGCATGTAGTC-1_contig_1
|
AGAGCTCTGGGGAGGAACTGCTCAGTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACTGGAGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-15*01
| null |
IGKJ1*01
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPPWTFGQGTKVEIK
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPPWTFGQGTKVEIK
|
1
|
287
| null | null |
288
|
325
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCC
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPP
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCC
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPP
| null | null | null | null |
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVMTQSPATLSVSPGERATLSCRAS
|
CAGAGTGTTAGCAGCAAC
|
QSVSSN
|
TTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GGTGCATCC
|
GAS
|
ACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGT
|
TRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAGCAGTATAATAACTGGCCTCCGTGGACG
|
QQYNNWPPWT
|
TGTCAGCAGTATAATAACTGGCCTCCGTGGACGTTC
|
36.0
|
CQQYNNWPPWTF
|
12.0
|
449.014
| null |
73.749
|
104S287M174S
| null |
391S38M136S
|
4.49e-128
| null |
3.465e-17
|
100.0
| null |
100.0
|
105
|
391
|
1
|
287
| null | null | null | null |
392
|
429
|
1
|
38
|
105
|
182
|
183
|
200
|
201
|
251
|
252
|
260
|
261
|
368
|
399.0
|
428.0
|
369.0
|
398.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'A', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '36 ': 'S', '37 ': 'S', '38 ': 'N'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'G', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'A', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'N', '109 ': 'N', '113 ': 'W', '114 ': 'P', '115 ': 'P', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGGTAAGCACG-1_contig_2
|
TTATCTGGGGGCTTTCTGAGAGTCATGGATCTCATGTGCAAGAAAATGAAGCACCTGTGGTTCTTCCTCCTGCTGGTGGCGGCTCCCAGATGGGTCCTGTCCCAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACAGGAAACTACGTATTACGATTTTTGGAGTGGTTATTATGACCGGGGGCCCCTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-39*01
|
IGHD3-3*01
|
IGHJ4*02
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACAGGAAACTACGTATTACGATTTTTGGAGTGGTTATTATGACCGGGGGCCCCTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACANNNNNNNNNGTATTACGATTTTTGGAGTGGTTATTATNNNNNNNNNNNNNTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARQETTYYDFWSGYYDRGPLDYWGQGTLVTVSS
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARXXXXYYDFWSGYYXXXXXDYWGQGTLVTVSS
|
1
|
299
|
309.0
|
336.0
|
350
|
391
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACA
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACA
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
GTATTACGATTTTTGGAGTGGTTATTAT
|
YYDFWSGYY
|
GTATTACGATTTTTGGAGTGGTTATTAT
|
YYDFWSGYY
|
TTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
TTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QLQLQESGPGLVKPSETLSLTCTVS
|
GGTGGCTCCATCAGCAGTAGTAGTTACTAC
|
GGSISSSSYY
|
TGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGT
|
WGWIRQPPGKGLEWIGS
|
ATCTATTATAGTGGGAGCACC
|
IYYSGST
|
TACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGT
|
YYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGACAGGAAACTACGTATTACGATTTTTGGAGTGGTTATTATGACCGGGGGCCCCTTGACTAC
|
ARQETTYYDFWSGYYDRGPLDY
|
TGTGCGAGACAGGAAACTACGTATTACGATTTTTGGAGTGGTTATTATGACCGGGGGCCCCTTGACTACTGG
|
72.0
|
CARQETTYYDFWSGYYDRGPLDYW
|
24.0
|
467.712
|
54.523
|
81.44
|
102S299M163S
|
410S28M126S3N
|
451S6N42M71S
|
1.0539999999999999e-133
|
9.762e-12
|
1.674e-19
|
100.0
|
100.0
|
100.0
|
103
|
401
|
1
|
299
|
411.0
|
438.0
|
1.0
|
28.0
|
452
|
493
|
7
|
48
|
103
|
177
|
178
|
207
|
208
|
258
|
259
|
279
|
280
|
393
|
460.0
|
492.0
|
394.0
|
459.0
|
GGAAACTAC
|
9
|
GACCGGGGGCCCC
|
13.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'L', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'E', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '34 ': 'S', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'G', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'S'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'Y', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'Q', '108 ': 'E', '109 ': 'T', '110 ': 'T', '111 ': 'Y', '111A': 'Y', '111B': 'D', '111C': 'F', '111D': 'W', '112E': 'S', '112D': 'G', '112C': 'Y', '112B': 'Y', '112A': 'D', '112 ': 'R', '113 ': 'G', '114 ': 'P', '115 ': 'L', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGGTAAGCACG-1_contig_1
|
AGGAGTCAGACCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGTTCCCAGGTTCCAGATGCGACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCCCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-12*01
| null |
IGKJ4*01
|
GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCCCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCNCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFPLTFGGGTKVEIK
|
DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFPLTFGGGTKVEIK
|
1
|
284
| null | null |
286
|
322
|
GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCC
|
DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFP
|
GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCC
|
DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFP
| null | null | null | null |
CTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
CTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGT
|
DIQMTQSPSSVSASVGDRVTITCRAS
|
CAGGGTATTAGCAGCTGG
|
QGISSW
|
TTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LAWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAACAGGCTAACAGTTTCCCCCTCACT
|
QQANSFPLT
|
TGTCAACAGGCTAACAGTTTCCCCCTCACTTTC
|
33.0
|
CQQANSFPLTF
|
11.0
|
444.34
| null |
71.827
|
93S284M174S3N
| null |
378S1N37M136S
|
1.117e-126
| null |
1.28e-16
|
100.0
| null |
100.0
|
94
|
377
|
1
|
284
| null | null | null | null |
379
|
415
|
2
|
38
|
94
|
171
|
172
|
189
|
190
|
240
|
241
|
249
|
250
|
357
|
385.0
|
414.0
|
358.0
|
384.0
|
C
|
1
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'G', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'W'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'A', '108 ': 'N', '109 ': 'S', '114 ': 'F', '115 ': 'P', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGGTATGGTTC-1_contig_1
|
AGCATCATCCAGAAACCACATCCCTCCGCTAGAGAAGCCCCTGACGGCACAGTTCCTCACTATGGACTGGATTTGGAGGATCCTCTTCTTGGTGGGAGCAGCGACAGGTGCCCACTCCCAAATGCAGCTGGTGCAGTCTGGGCCTGAGGTGAAGAAGCCTGGGACCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATTCACCTTTACTAGCTCTGCTATGCAGTGGGTGCGACAGGCTCGTGGACAACGCCTTGAGTGGATAGGATGGATCGTCGTTGGCAGTGGTAACACAAACTACGCACAGAAGTTCCAGGAAAGAGTCACCATTACCAGGGACATGTCCACAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCCGAGGACACGGCCGTGTATTACTGTGCGGCAGACTCCTTCCAACTGGGGTCCTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-58*02
|
IGHD7-27*01
|
IGHJ6*02
|
CAAATGCAGCTGGTGCAGTCTGGGCCTGAGGTGAAGAAGCCTGGGACCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATTCACCTTTACTAGCTCTGCTATGCAGTGGGTGCGACAGGCTCGTGGACAACGCCTTGAGTGGATAGGATGGATCGTCGTTGGCAGTGGTAACACAAACTACGCACAGAAGTTCCAGGAAAGAGTCACCATTACCAGGGACATGTCCACAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCCGAGGACACGGCCGTGTATTACTGTGCGGCAGACTCCTTCCAACTGGGGTCCTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAAATGCAGCTGGTGCAGTCTGGGCCTGAGGTGAAGAAGCCTGGGACCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATTCACCTTTACTAGCTCTGCTATGCAGTGGGTGCGACAGGCTCGTGGACAACGCCTTGAGTGGATAGGATGGATCGTCGTTGGCAGTGGTAACACAAACTACGCACAGAAGTTCCAGGAAAGAGTCACCATTACCAGGGACATGTCCACAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCCGAGGACACGGCCGTGTATTACTGTGCGGCAGANNNNNNNNAACTGGGGNNCTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QMQLVQSGPEVKKPGTSVKVSCKASGFTFTSSAMQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAYMELSSLRSEDTAVYYCAADSFQLGSYYYGMDVWGQGTTVTVSS
|
QMQLVQSGPEVKKPGTSVKVSCKASGFTFTSSAMQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAYMELSSLRSEDTAVYYCAAXXXXLGXYYYGMDVWGQGTTVTVSS
|
1
|
296
|
305.0
|
312.0
|
315
|
369
|
CAAATGCAGCTGGTGCAGTCTGGGCCTGAGGTGAAGAAGCCTGGGACCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATTCACCTTTACTAGCTCTGCTATGCAGTGGGTGCGACAGGCTCGTGGACAACGCCTTGAGTGGATAGGATGGATCGTCGTTGGCAGTGGTAACACAAACTACGCACAGAAGTTCCAGGAAAGAGTCACCATTACCAGGGACATGTCCACAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCCGAGGACACGGCCGTGTATTACTGTGCGGCAGA
|
QMQLVQSGPEVKKPGTSVKVSCKASGFTFTSSAMQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAYMELSSLRSEDTAVYYCAA
|
CAAATGCAGCTGGTGCAGTCTGGGCCTGAGGTGAAGAAGCCTGGGACCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATTCACCTTTACTAGCTCTGCTATGCAGTGGGTGCGACAGGCTCGTGGACAACGCCTTGAGTGGATAGGATGGATCGTCGTTGGCAGTGGTAACACAAACTACGCACAGAAGTTCCAGGAAAGAGTCACCATTACCAGGGACATGTCCACAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCCGAGGACACGGCCGTGTATTACTGTGCGGCAGA
|
QMQLVQSGPEVKKPGTSVKVSCKASGFTFTSSAMQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAYMELSSLRSEDTAVYYCAA
|
AACTGGGG
|
LG
|
AACTGGGG
|
LG
|
CTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYGMDVWGQGTTVTVSS
|
CTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYGMDVWGQGTTVTVSS
|
CAAATGCAGCTGGTGCAGTCTGGGCCTGAGGTGAAGAAGCCTGGGACCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QMQLVQSGPEVKKPGTSVKVSCKAS
|
GGATTCACCTTTACTAGCTCTGCT
|
GFTFTSSA
|
ATGCAGTGGGTGCGACAGGCTCGTGGACAACGCCTTGAGTGGATAGGATGG
|
MQWVRQARGQRLEWIGW
|
ATCGTCGTTGGCAGTGGTAACACA
|
IVVGSGNT
|
AACTACGCACAGAAGTTCCAGGAAAGAGTCACCATTACCAGGGACATGTCCACAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCCGAGGACACGGCCGTGTATTACTGT
|
NYAQKFQERVTITRDMSTSTAYMELSSLRSEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGGCAGACTCCTTCCAACTGGGGTCCTACTACTACGGTATGGACGTC
|
AADSFQLGSYYYGMDV
|
TGTGCGGCAGACTCCTTCCAACTGGGGTCCTACTACTACGGTATGGACGTCTGG
|
54.0
|
CAADSFQLGSYYYGMDVW
|
18.0
|
463.037
|
16.069
|
106.435
|
118S296M145S
|
422S2N8M129S1N
|
432S7N55M72S
|
2.6670000000000002e-132
|
3.642
|
4.961e-27
|
100.0
|
100.0
|
100.0
|
119
|
414
|
1
|
296
|
423.0
|
430.0
|
3.0
|
10.0
|
433
|
487
|
8
|
62
|
119
|
193
|
194
|
217
|
218
|
268
|
269
|
292
|
293
|
406
|
455.0
|
487.0
|
407.0
|
454.0
|
CTCCTTCC
|
8
|
TC
|
2.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'M', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'T', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'S', '37 ': 'S', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'Q', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'R', '47 ': 'G', '48 ': 'Q', '49 ': 'R', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'I', '57 ': 'V', '58 ': 'V', '59 ': 'G', '62 ': 'S', '63 ': 'G', '64 ': 'N', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'E', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'M', '83 ': 'S', '84 ': 'T', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'A', '107 ': 'D', '108 ': 'S', '109 ': 'F', '110 ': 'Q', '111 ': 'L', '111A': 'G', '112B': 'S', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGGTATGGTTC-1_contig_2
|
GCTGGGGTCTCAGGAGGCAGCGCTCTCAGGACATCTCCACCATGGCCTGGGCTCTGCTGCTCCTCACCCTCCTCACTCAGGGCACAGGGTCCTGGGCCCAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTGTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV2-14*01
| null |
IGLJ3*02
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTGTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTNTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSNRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCSSYTSSSTLWVFGGGTKLTVL
|
QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSNRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCSSYTSSSTLWVFGGGTKLTVL
|
1
|
296
| null | null |
298
|
334
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCT
|
QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSNRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCSSYTSSSTL
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCT
|
QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSNRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCSSYTSSSTL
| null | null | null | null |
TGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
TGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACC
|
QSALTQPASVSGSPGQSITISCTGT
|
AGCAGTGACGTTGGTGGTTATAACTAT
|
SSDVGGYNY
|
GTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTAT
|
VSWYQQHPGKAPKLMIY
|
GAGGTCAGT
|
EVS
|
AATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGC
|
NRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
AGCTCATATACAAGCAGCAGCACTCTGTGGGTG
|
SSYTSSSTLWV
|
TGCAGCTCATATACAAGCAGCAGCACTCTGTGGGTGTTC
|
39.0
|
CSSYTSSSTLWVF
|
13.0
|
463.037
| null |
71.827
|
98S296M249S1N
| null |
395S1N37M211S
|
3.072e-132
| null |
1.498e-16
|
100.0
| null |
100.0
|
99
|
394
|
1
|
296
| null | null | null | null |
396
|
432
|
2
|
38
|
99
|
173
|
174
|
200
|
201
|
251
|
252
|
260
|
261
|
368
|
402.0
|
431.0
|
369.0
|
401.0
|
G
|
1
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'A', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'A', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'G', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'S', '19 ': 'I', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'T', '25 ': 'G', '26 ': 'T'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'D', '30 ': 'V', '31 ': 'G', '35 ': 'G', '36 ': 'Y', '37 ': 'N', '38 ': 'Y'}, 'fwl2': {'39 ': 'V', '40 ': 'S', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'H', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'M', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'E', '57 ': 'V', '65 ': 'S'}, 'fwl3': {'66 ': 'N', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'S', '74 ': 'N', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'S', '106 ': 'S', '107 ': 'Y', '108 ': 'T', '109 ': 'S', '110 ': 'S', '113 ': 'S', '114 ': 'T', '115 ': 'L', '116 ': 'W', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGGTCGCGTGT-1_contig_2
|
TGGGGAGTGACTCCTGTGCCCCACCATGGACACACTTTGCTCCACGCTCCTGCTGCTGACCATCCCTTCATGGGTCTTGTCCCAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACAGTATAGCAGTGGCTAGTAAGTGGGTTAGCGTCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV2-5*02
|
IGHD6-19*01
|
IGHJ4*02
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACAGTATAGCAGTGGCTAGTAAGTGGGTTAGCGTCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACAGTATAGCAGTGGCTGGTANNNNNNNNNNNNNCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QITLKESGPTLVKPTQTLTLTCTFSGFSLSTSGVGVGWIRQPPGKALEWLALIYWDDDKRYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCAHSIAVASKWVSVFDYWGQGTLVTVSS
|
QITLKESGPTLVKPTQTLTLTCTFSGFSLSTSGVGVGWIRQPPGKALEWLALIYWDDDKRYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCAHSIAVAGXXXXXFDYWGQGTLVTVSS
|
1
|
299
|
300.0
|
316.0
|
330
|
373
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACAG
|
QITLKESGPTLVKPTQTLTLTCTFSGFSLSTSGVGVGWIRQPPGKALEWLALIYWDDDKRYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCAH
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACAG
|
QITLKESGPTLVKPTQTLTLTCTFSGFSLSTSGVGVGWIRQPPGKALEWLALIYWDDDKRYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCAH
|
TATAGCAGTGGCTAGTA
|
IAVAS
|
TATAGCAGTGGCTGGTA
|
IAVAG
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCT
|
QITLKESGPTLVKPTQTLTLTCTFS
|
GGGTTCTCACTCAGCACTAGTGGAGTGGGT
|
GFSLSTSGVG
|
GTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTC
|
VGWIRQPPGKALEWLAL
|
ATTTATTGGGATGATGATAAG
|
IYWDDDK
|
CGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGT
|
RYSPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCACACAGTATAGCAGTGGCTAGTAAGTGGGTTAGCGTCTTTGACTAC
|
AHSIAVASKWVSVFDY
|
TGTGCACACAGTATAGCAGTGGCTAGTAAGTGGGTTAGCGTCTTTGACTACTGG
|
54.0
|
CAHSIAVASKWVSVFDYW
|
18.0
|
467.712
|
27.605
|
85.286
|
82S299M145S2N
|
381S3N17M128S1N
|
411S4N44M71S
|
9.797e-134
|
0.001153
|
1.0840000000000001e-20
|
100.0
|
94.118
|
100.0
|
83
|
381
|
1
|
299
|
382.0
|
398.0
|
4.0
|
20.0
|
412
|
455
|
5
|
48
|
83
|
157
|
158
|
187
|
188
|
238
|
239
|
259
|
260
|
373
|
422.0
|
454.0
|
374.0
|
421.0
| null |
0
|
AGTGGGTTAGCGT
|
13.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'I', '3 ': 'T', '4 ': 'L', '5 ': 'K', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'T', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'T', '17 ': 'Q', '18 ': 'T', '19 ': 'L', '20 ': 'T', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'F', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'S', '30 ': 'L', '31 ': 'S', '34 ': 'T', '35 ': 'S', '36 ': 'G', '37 ': 'V', '38 ': 'G'}, 'fwh2': {'39 ': 'V', '40 ': 'G', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'L', '54 ': 'A', '55 ': 'L'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'W', '59 ': 'D', '63 ': 'D', '64 ': 'D', '65 ': 'K'}, 'fwh3': {'66 ': 'R', '67 ': 'Y', '68 ': 'S', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'L', '77 ': 'T', '78 ': 'I', '79 ': 'T', '80 ': 'K', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'V', '88 ': 'V', '89 ': 'L', '90 ': 'T', '91 ': 'M', '92 ': 'T', '93 ': 'N', '94 ': 'M', '95 ': 'D', '96 ': 'P', '97 ': 'V', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'H', '107 ': 'S', '108 ': 'I', '109 ': 'A', '110 ': 'V', '111 ': 'A', '111A': 'S', '112B': 'K', '112A': 'W', '112 ': 'V', '113 ': 'S', '114 ': 'V', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGGTCGCGTGT-1_contig_1
|
AGTCTGGGCCTAAGGAAGCAGCACTGGTGGTGCCTCAGCCATGGCCTGGACCGTTCTCCTCCTCGGCCTCCTCTCTCACTGCACAGGCTCTGTGACCTCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCTCTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-21*02
| null |
IGLJ3*02
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCTCTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCNNTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDLWVFGGGTKLTVL
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDXWVFGGGTKLTVL
|
1
|
286
| null | null |
289
|
325
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATC
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSD
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATC
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSD
| null | null | null | null |
TGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
TGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAAC
|
SYVLTQPPSVSVAPGQTARITCGGN
|
AACATTGGAAGTAAAAGT
|
NIGSKS
|
GTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTAT
|
VHWYQQKPGQAPVLVVY
|
GATGATAGC
|
DDS
|
GACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGT
|
DRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGGTGTGGGATAGTAGTAGTGATCTCTGGGTG
|
QVWDSSSDLWV
|
TGTCAGGTGTGGGATAGTAGTAGTGATCTCTGGGTGTTC
|
39.0
|
CQVWDSSSDLWVF
|
13.0
|
447.456
| null |
71.827
|
97S286M250S4N
| null |
385S1N37M211S
|
1.4819999999999999e-127
| null |
1.475e-16
|
100.0
| null |
100.0
|
98
|
383
|
1
|
286
| null | null | null | null |
386
|
422
|
2
|
38
|
98
|
172
|
173
|
190
|
191
|
241
|
242
|
250
|
251
|
358
|
392.0
|
421.0
|
359.0
|
391.0
|
TC
|
2
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'A', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'R', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'G', '25 ': 'G', '26 ': 'N'}, 'cdrl1': {'27 ': 'N', '28 ': 'I', '29 ': 'G', '36 ': 'S', '37 ': 'K', '38 ': 'S'}, 'fwl2': {'39 ': 'V', '40 ': 'H', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'V', '55 ': 'Y'}, 'cdrl2': {'56 ': 'D', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'D', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'N', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'V', '95 ': 'E', '96 ': 'A', '97 ': 'G', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'V', '107 ': 'W', '108 ': 'D', '109 ': 'S', '110 ': 'S', '113 ': 'S', '114 ': 'D', '115 ': 'L', '116 ': 'W', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGGTCGGCATC-1_contig_2
|
CGAGCCCAGCACTGGAAGTCGCCGGTGTTTCCATTCGGTGATCATCACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTCCTCGTTGCTCTTTTAAGAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGTGGGGCGGGTAAGCAGTGGCTGGTACGGGGGCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-30-3*01
|
IGHD6-19*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGTGGGGCGGGTAAGCAGTGGCTGGTACGGGGGCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGNNNNNNNNNNNAGCAGTGGCTGGTACNNNNNCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARVGRVSSGWYGGFDYWGQGTLVTVSS
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARXXXXSSGWYXXFDYWGQGTLVTVSS
|
1
|
295
|
307.0
|
321.0
|
327
|
370
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
AGCAGTGGCTGGTAC
|
SSGWY
|
AGCAGTGGCTGGTAC
|
SSGWY
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
QVQLVESGGGVVQPGRSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATGCT
|
GFTFSSYA
|
ATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTT
|
MHWVRQAPGKGLEWVAV
|
ATATCATATGATGGAAGCAATAAA
|
ISYDGSNK
|
TACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGTGGGGCGGGTAAGCAGTGGCTGGTACGGGGGCTTTGACTAC
|
ARVGRVSSGWYGGFDY
|
TGTGCGAGAGTGGGGCGGGTAAGCAGTGGCTGGTACGGGGGCTTTGACTACTGG
|
54.0
|
CARVGRVSSGWYGGFDYW
|
18.0
|
461.479
|
29.528
|
85.286
|
124S295M146S1N
|
430S6N15M120S
|
450S4N44M71S
|
7.943e-132
|
0.000327
|
1.1670000000000001e-20
|
100.0
|
100.0
|
100.0
|
125
|
419
|
1
|
295
|
431.0
|
445.0
|
7.0
|
21.0
|
451
|
494
|
5
|
48
|
125
|
199
|
200
|
223
|
224
|
274
|
275
|
298
|
299
|
412
|
461.0
|
493.0
|
413.0
|
460.0
|
TGGGGCGGGTA
|
11
|
GGGGG
|
5.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'V', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'Y', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'N', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'V', '108 ': 'G', '109 ': 'R', '110 ': 'V', '111 ': 'S', '111A': 'S', '112B': 'G', '112A': 'W', '112 ': 'Y', '113 ': 'G', '114 ': 'G', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGGTCGGCATC-1_contig_1
|
GAGCTACAACAGGCAGGCAGGGGCAGCAAGATGGTGTTGCAGACCCAGGTCTTCATTTCTCTGTTGCTCTGGATCTCTGGTGCCTACGGGGACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV4-1*01
| null |
IGKJ4*01
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPLTFGGGTKVEIK
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPLTFGGGTKVEIK
|
1
|
304
| null | null |
305
|
340
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTP
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTP
| null | null | null | null |
TCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
TFGGGTKVEIK
|
TCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
TFGGGTKVEIK
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGC
|
DIVMTQSPDSLAVSLGERATINCKSS
|
CAGAGTGTTTTATACAGCTCCAACAATAAGAACTAC
|
QSVLYSSNNKNY
|
TTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTAC
|
LAWYQQKPGQPPKLLIY
|
TGGGCATCT
|
WAS
|
ACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGT
|
TRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAGCAATATTATAGTACTCCTCTCACT
|
QQYYSTPLT
|
TGTCAGCAATATTATAGTACTCCTCTCACTTTC
|
33.0
|
CQQYYSTPLTF
|
11.0
|
475.502
| null |
69.904
|
90S304M172S1N
| null |
394S2N36M136S
|
4.78e-136
| null |
4.989e-16
|
100.0
| null |
100.0
|
91
|
394
|
1
|
304
| null | null | null | null |
395
|
430
|
3
|
38
|
91
|
168
|
169
|
204
|
205
|
255
|
256
|
264
|
265
|
372
|
400.0
|
429.0
|
373.0
|
399.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'D', '10 ': 'S', '11 ': 'L', '12 ': 'A', '13 ': 'V', '14 ': 'S', '15 ': 'L', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'I', '22 ': 'N', '23 ': 'C', '24 ': 'K', '25 ': 'S', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '30 ': 'L', '31 ': 'Y', '32 ': 'S', '33 ': 'S', '34 ': 'N', '35 ': 'N', '36 ': 'K', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'P', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'W', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'R', '68 ': 'E', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'V', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'Y', '109 ': 'S', '114 ': 'T', '115 ': 'P', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGGTCTGCCAG-1_contig_2
|
AGCTCTGAGAGAGGAGCCCAGCCCTGGGATTTTCAGGTGTTTTCATTTGGTGATCAGGACTGAACAGAGAGAACTCACCATGGAGTTTGGGCTGAGCTGGCTTTTTCTTGTGGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAATTCGATTACGATTTTTGGAGTGGCCCTTTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-23*01
|
IGHD3-3*01
|
IGHJ4*02
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAATTCGATTACGATTTTTGGAGTGGCCCTTTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAANNNNATTACGATTTTTGGAGTGGNNNNNTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCANSITIFGVALYWGQGTLVTVSS
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAXXITIFGVXXYWGQGTLVTVSS
|
1
|
293
|
298.0
|
316.0
|
322
|
358
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAA
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCA
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAA
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCA
|
ATTACGATTTTTGGAGTGG
|
ITIFGV
|
ATTACGATTTTTGGAGTGG
|
ITIFGV
|
TACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YWGQGTLVTVSS
|
TACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YWGQGTLVTVSS
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLLESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTTAGCAGCTATGCC
|
GFTFSSYA
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCT
|
MSWVRQAPGKGLEWVSA
|
ATTAGTGGTAGTGGTGGTAGCACA
|
ISGSGGST
|
TACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAATTCGATTACGATTTTTGGAGTGGCCCTTTAC
|
ANSITIFGVALY
|
TGTGCGAATTCGATTACGATTTTTGGAGTGGCCCTTTACTGG
|
42.0
|
CANSITIFGVALYW
|
14.0
|
458.363
|
37.218
|
71.827
|
136S293M136S3N
|
433S2N19M113S10N
|
457S11N37M71S
|
6.887000000000005e-131
|
1.583e-06
|
1.314e-16
|
100.0
|
100.0
|
100.0
|
137
|
429
|
1
|
293
|
434.0
|
452.0
|
3.0
|
21.0
|
458
|
494
|
12
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
461.0
|
493.0
|
425.0
|
460.0
|
TTCG
|
4
|
CCCTT
|
5.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'L', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'A'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'G', '59 ': 'S', '62 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'N', '107 ': 'S', '108 ': 'I', '109 ': 'T', '110 ': 'I', '112 ': 'F', '113 ': 'G', '114 ': 'V', '115 ': 'A', '116 ': 'L', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGGTCTGCCAG-1_contig_1
|
ATGAGCAAAACTGACAAGTCAAGGCAGGAAGATGTTGCCATCACAACTCATTGGGTTTCTGCTGCTCTGGGTTCCAGCCTCCAGGGGTGAAATTGTGCTGACTCAGTCTCCAGACTTTCAGTCTGTGACTCCAAAGGAGAAAGTCACCATCACCTGCCGGGCCAGTCAGAGCATTGGTAGTAGCTTACACTGGTACCAGCAGAAACCAGATCAGTCTCCAAAGCTCCTCATCAAGTATGCTTCCCAGTCCTTCTCAGGGGTCCCCTCGAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACCCTCACCATCAATAGCCTGGAAGCTGAAGATGCTGCAACGTATTACTGTCATCAGAGTAGTAGTTTTCCCCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV6-21*01
| null |
IGKJ4*01
|
GAAATTGTGCTGACTCAGTCTCCAGACTTTCAGTCTGTGACTCCAAAGGAGAAAGTCACCATCACCTGCCGGGCCAGTCAGAGCATTGGTAGTAGCTTACACTGGTACCAGCAGAAACCAGATCAGTCTCCAAAGCTCCTCATCAAGTATGCTTCCCAGTCCTTCTCAGGGGTCCCCTCGAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACCCTCACCATCAATAGCCTGGAAGCTGAAGATGCTGCAACGTATTACTGTCATCAGAGTAGTAGTTTTCCCCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GAAATTGTGCTGACTCAGTCTCCAGACTTTCAGTCTGTGACTCCAAAGGAGAAAGTCACCATCACCTGCCGGGCCAGTCAGAGCATTGGTAGTAGCTTACACTGGTACCAGCAGAAACCAGATCAGTCTCCAAAGCTCCTCATCAAGTATGCTTCCCAGTCCTTCTCAGGGGTCCCCTCGAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACCCTCACCATCAATAGCCTGGAAGCTGAAGATGCTGCAACGTATTACTGTCATCAGAGTAGTAGTTTACCNCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
EIVLTQSPDFQSVTPKEKVTITCRASQSIGSSLHWYQQKPDQSPKLLIKYASQSFSGVPSRFSGSGSGTDFTLTINSLEAEDAATYYCHQSSSFPLTFGGGTKVEIK
|
EIVLTQSPDFQSVTPKEKVTITCRASQSIGSSLHWYQQKPDQSPKLLIKYASQSFSGVPSRFSGSGSGTDFTLTINSLEAEDAATYYCHQSSSLPLTFGGGTKVEIK
|
1
|
284
| null | null |
286
|
322
|
GAAATTGTGCTGACTCAGTCTCCAGACTTTCAGTCTGTGACTCCAAAGGAGAAAGTCACCATCACCTGCCGGGCCAGTCAGAGCATTGGTAGTAGCTTACACTGGTACCAGCAGAAACCAGATCAGTCTCCAAAGCTCCTCATCAAGTATGCTTCCCAGTCCTTCTCAGGGGTCCCCTCGAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACCCTCACCATCAATAGCCTGGAAGCTGAAGATGCTGCAACGTATTACTGTCATCAGAGTAGTAGTTTTCC
|
EIVLTQSPDFQSVTPKEKVTITCRASQSIGSSLHWYQQKPDQSPKLLIKYASQSFSGVPSRFSGSGSGTDFTLTINSLEAEDAATYYCHQSSSFP
|
GAAATTGTGCTGACTCAGTCTCCAGACTTTCAGTCTGTGACTCCAAAGGAGAAAGTCACCATCACCTGCCGGGCCAGTCAGAGCATTGGTAGTAGCTTACACTGGTACCAGCAGAAACCAGATCAGTCTCCAAAGCTCCTCATCAAGTATGCTTCCCAGTCCTTCTCAGGGGTCCCCTCGAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACCCTCACCATCAATAGCCTGGAAGCTGAAGATGCTGCAACGTATTACTGTCATCAGAGTAGTAGTTTACC
|
EIVLTQSPDFQSVTPKEKVTITCRASQSIGSSLHWYQQKPDQSPKLLIKYASQSFSGVPSRFSGSGSGTDFTLTINSLEAEDAATYYCHQSSSLP
| null | null | null | null |
CTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
CTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GAAATTGTGCTGACTCAGTCTCCAGACTTTCAGTCTGTGACTCCAAAGGAGAAAGTCACCATCACCTGCCGGGCCAGT
|
EIVLTQSPDFQSVTPKEKVTITCRAS
|
CAGAGCATTGGTAGTAGC
|
QSIGSS
|
TTACACTGGTACCAGCAGAAACCAGATCAGTCTCCAAAGCTCCTCATCAAG
|
LHWYQQKPDQSPKLLIK
|
TATGCTTCC
|
YAS
|
CAGTCCTTCTCAGGGGTCCCCTCGAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACCCTCACCATCAATAGCCTGGAAGCTGAAGATGCTGCAACGTATTACTGT
|
QSFSGVPSRFSGSGSGTDFTLTINSLEAEDAATYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CATCAGAGTAGTAGTTTTCCCCTCACT
|
HQSSSFPLT
|
TGTCATCAGAGTAGTAGTTTTCCCCTCACTTTC
|
33.0
|
CHQSSSFPLTF
|
11.0
|
441.224
| null |
71.827
|
88S284M174S3N
| null |
373S1N37M136S
|
9.59e-126
| null |
1.268e-16
|
99.648
| null |
100.0
|
89
|
372
|
1
|
284
| null | null | null | null |
374
|
410
|
2
|
38
|
89
|
166
|
167
|
184
|
185
|
235
|
236
|
244
|
245
|
352
|
380.0
|
409.0
|
353.0
|
379.0
|
C
|
1
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'D', '10 ': 'F', '11 ': 'Q', '12 ': 'S', '13 ': 'V', '14 ': 'T', '15 ': 'P', '16 ': 'K', '17 ': 'E', '18 ': 'K', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'G', '37 ': 'S', '38 ': 'S'}, 'fwk2': {'39 ': 'L', '40 ': 'H', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'D', '48 ': 'Q', '49 ': 'S', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'K'}, 'cdrk2': {'56 ': 'Y', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'Q', '67 ': 'S', '68 ': 'F', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'E', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'A', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'H', '106 ': 'Q', '107 ': 'S', '108 ': 'S', '109 ': 'S', '114 ': 'F', '115 ': 'P', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGGTGCAACTT-1_contig_2
|
TGGGGAGCTCTGGGAGAGGAGCCCCAGCCCTGAGATTCCCAGGTGTTTCCATTCAGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTGGGACTGAGCTGGATTTTCCTTTTGGCTATTTTAAAAGGTGTCCAGTGTGAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGGAGGATACGGGGAGTGGGAGCAAACCAGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-9*01
|
IGHD1-26*01
|
IGHJ3*02
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGGAGGATACGGGGAGTGGGAGCAAACCAGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGNNNNNNNNNNNNAGTGGGAGCNNNNNNNNNNTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKGGYGEWEQTRGAFDIWGQGTMVTVSS
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKXXXXXWEXXXXAFDIWGQGTMVTVSS
|
1
|
295
|
308.0
|
316.0
|
327
|
373
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAG
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAK
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAG
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAK
|
AGTGGGAGC
|
WE
|
AGTGGGAGC
|
WE
|
TGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
AFDIWGQGTMVTVSS
|
TGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
AFDIWGQGTMVTVSS
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGRSLRLSCAAS
|
GGATTCACCTTTGATGATTATGCC
|
GFTFDDYA
|
ATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGT
|
MHWVRQAPGKGLEWVSG
|
ATTAGTTGGAATAGTGGTAGCATA
|
ISWNSGSI
|
GGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGT
|
GYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
GCAAAAGGAGGATACGGGGAGTGGGAGCAAACCAGGGGTGCTTTTGATATC
|
AKGGYGEWEQTRGAFDI
|
TGTGCAAAAGGAGGATACGGGGAGTGGGAGCAAACCAGGGGTGCTTTTGATATCTGG
|
57.0
|
CAKGGYGEWEQTRGAFDIW
|
19.0
|
461.479
|
17.992
|
91.054
|
142S295M149S3N
|
449S5N9M128S6N
|
468S3N47M71S
|
8.207e-132
|
1.008
|
2.2219999999999996e-22
|
100.0
|
100.0
|
100.0
|
143
|
437
|
1
|
295
|
450.0
|
458.0
|
6.0
|
14.0
|
469
|
515
|
4
|
50
|
143
|
217
|
218
|
241
|
242
|
292
|
293
|
316
|
317
|
430
|
482.0
|
514.0
|
431.0
|
481.0
|
GAGGATACGGGG
|
12
|
AAACCAGGGG
|
10.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'D', '36 ': 'D', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'G'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'W', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'I'}, 'fwh3': {'66 ': 'G', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'L', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'G', '108 ': 'G', '109 ': 'Y', '110 ': 'G', '111 ': 'E', '111A': 'W', '111B': 'E', '112B': 'Q', '112A': 'T', '112 ': 'R', '113 ': 'G', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGGTGCAACTT-1_contig_1
|
AGTCTGGGCCTAAGGAAGCAGCACTGGTGGTGCCTCAGCCATGGCCTGGACCGTTCTCCTCCTCGGCCTCCTCTCTCACTGCACAGGCTCTGTGACCTCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTTTTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAGGTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-21*02
| null |
IGLJ1*01
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTTTTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTNNTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSFYVFGTGTKVTVL
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSXYVFGTGTKVTVL
|
1
|
282
| null | null |
285
|
322
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGT
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSS
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGT
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSS
| null | null | null | null |
TTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
YVFGTGTKVTVL
|
TTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
YVFGTGTKVTVL
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAAC
|
SYVLTQPPSVSVAPGQTARITCGGN
|
AACATTGGAAGTAAAAGT
|
NIGSKS
|
GTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTAT
|
VHWYQQKPGQAPVLVVY
|
GATGATAGC
|
DDS
|
GACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGT
|
DRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYC
|
TTCGGAACTGGGACCAAGGTCACCGTCCTA
|
FGTGTKVTVL
|
CAGGTGTGGGATAGTAGTAGTTTTTATGTC
|
QVWDSSSFYV
|
TGTCAGGTGTGGGATAGTAGTAGTTTTTATGTCTTC
|
36.0
|
CQVWDSSSFYVF
|
12.0
|
441.224
| null |
73.749
|
97S282M251S8N
| null |
381S38M211S
|
1.108e-125
| null |
3.871e-17
|
100.0
| null |
100.0
|
98
|
379
|
1
|
282
| null | null | null | null |
382
|
419
|
1
|
38
|
98
|
172
|
173
|
190
|
191
|
241
|
242
|
250
|
251
|
358
|
389.0
|
418.0
|
359.0
|
388.0
|
TT
|
2
| null | null |
GTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'A', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'R', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'G', '25 ': 'G', '26 ': 'N'}, 'cdrl1': {'27 ': 'N', '28 ': 'I', '29 ': 'G', '36 ': 'S', '37 ': 'K', '38 ': 'S'}, 'fwl2': {'39 ': 'V', '40 ': 'H', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'V', '55 ': 'Y'}, 'cdrl2': {'56 ': 'D', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'D', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'N', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'V', '95 ': 'E', '96 ': 'A', '97 ': 'G', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'V', '107 ': 'W', '108 ': 'D', '109 ': 'S', '113 ': 'S', '114 ': 'S', '115 ': 'F', '116 ': 'Y', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'T', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGGTGGTCCGT-1_contig_2
|
GAGCTCTGGGAGAGGAGCCCAGCACTAGAAGTCGGCGGTGTTTCCATTCGGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTCCTCGTTGCTCTTTTAAGAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAGGTCTGAGGTGGGAGCTACAATCCGATCTCCAGGGATGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-30*18
|
IGHD1-26*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAGGTCTGAGGTGGGAGCTACAATCCGATCTCCAGGGATGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAGNNNNNNNGTGGGAGCTACNNNNNNNNNNNNNNNNNTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKGLRWELQSDLQGWGQGTLVTVSS
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKXXXWELXXXXXXWGQGTLVTVSS
|
1
|
295
|
303.0
|
313.0
|
331
|
364
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
GTGGGAGCTAC
|
WEL
|
GTGGGAGCTAC
|
WEL
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WGQGTLVTVSS
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WGQGTLVTVSS
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
QVQLVESGGGVVQPGRSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATGGC
|
GFTFSSYG
|
ATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTT
|
MHWVRQAPGKGLEWVAV
|
ATATCATATGATGGAAGTAATAAA
|
ISYDGSNK
|
TACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAAAGGTCTGAGGTGGGAGCTACAATCCGATCTCCAGGGA
|
AKGLRWELQSDLQG
|
TGTGCGAAAGGTCTGAGGTGGGAGCTACAATCCGATCTCCAGGGATGG
|
48.0
|
CAKGLRWELQSDLQGW
|
16.0
|
461.479
|
21.837
|
66.059
|
137S295M140S1N
|
439S6N11M122S3N
|
467S14N34M71S
|
8.046e-132
|
0.06841
|
7.248e-15
|
100.0
|
100.0
|
100.0
|
138
|
432
|
1
|
295
|
440.0
|
450.0
|
7.0
|
17.0
|
468
|
501
|
15
|
48
|
138
|
212
|
213
|
236
|
237
|
287
|
288
|
311
|
312
|
425
|
468.0
|
500.0
|
426.0
|
467.0
|
GTCTGAG
|
7
|
AATCCGATCTCCAGGGA
|
17.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'V', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'G'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'Y', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'N', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'G', '108 ': 'L', '109 ': 'R', '110 ': 'W', '111 ': 'E', '112A': 'L', '112 ': 'Q', '113 ': 'S', '114 ': 'D', '115 ': 'L', '116 ': 'Q', '117 ': 'G'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGGTGGTCCGT-1_contig_1
|
TGAGCGCAGAAGGCAGGACTCGGGACAATCTTCATCATGACCTGCTCCCCTCTCCTCCTCACCCTTCTCATTCACTGCACAGGGTCCTGGGCCCAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATTTATGACAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTGGCCAGGGGGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV1-51*01
| null |
IGLJ2*01
|
CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATTTATGACAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTGGCCAGGGGGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATTTATGACAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTGGNNNNNNNGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAGQGVVFGGGTKLTVL
|
QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAGXXVVFGGGTKLTVL
|
1
|
296
| null | null |
304
|
340
|
CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATTTATGACAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTGG
|
QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAG
|
CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATTTATGACAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTGG
|
QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAG
| null | null | null | null |
GTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
GTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGC
|
QSVLTQPPSVSAAPGQKVTISCSGS
|
AGCTCCAACATTGGGAATAATTAT
|
SSNIGNNY
|
GTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATTTAT
|
VSWYQQLPGTAPKLLIY
|
GACAATAAT
|
DNN
|
AAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGC
|
KRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
GGAACATGGGATAGCAGCCTGAGTGCTGGCCAGGGGGTGGTA
|
GTWDSSLSAGQGVV
|
TGCGGAACATGGGATAGCAGCCTGAGTGCTGGCCAGGGGGTGGTATTC
|
48.0
|
CGTWDSSLSAGQGVVF
|
16.0
|
463.037
| null |
71.827
|
93S296M255S
| null |
396S1N37M211S
|
3.077e-132
| null |
1.501e-16
|
100.0
| null |
100.0
|
94
|
389
|
1
|
296
| null | null | null | null |
397
|
433
|
2
|
38
|
94
|
168
|
169
|
192
|
193
|
243
|
244
|
252
|
253
|
360
|
403.0
|
432.0
|
361.0
|
402.0
|
CCAGGGG
|
7
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'A', '14 ': 'A', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'K', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'S'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'N', '30 ': 'I', '35 ': 'G', '36 ': 'N', '37 ': 'N', '38 ': 'Y'}, 'fwl2': {'39 ': 'V', '40 ': 'S', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'L', '46 ': 'P', '47 ': 'G', '48 ': 'T', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'D', '57 ': 'N', '65 ': 'N'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'S', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'G', '91 ': 'I', '92 ': 'T', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'T', '97 ': 'G', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'G', '106 ': 'T', '107 ': 'W', '108 ': 'D', '109 ': 'S', '110 ': 'S', '111 ': 'L', '112A': 'S', '112 ': 'A', '113 ': 'G', '114 ': 'Q', '115 ': 'G', '116 ': 'V', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGGTGTGTGCC-1_contig_2
|
GTATATGGGGAGGGTCCTGCTCACATGGGAAATACTTTCTGAGAGTCCTGGACCTCCTGTGCAAGAACATGAAACACCTGTGGTTCTTCCTCCTGCTGGTGGCAGCTCCCAGATGGGTCCTGTCCCAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCCACGGGCTATGGTTGGGCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-30-4*01
|
IGHD5-18*01
|
IGHJ4*02
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCCACGGGCTATGGTTGGGCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCNNNNNGCTATGGTTNNNCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAHGLWLGYWGQGTLVTVSS
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAXXLWXXYWGQGTLVTVSS
|
1
|
294
|
300.0
|
308.0
|
312
|
349
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCC
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCA
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCC
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCA
|
GCTATGGTT
|
LW
|
GCTATGGTT
|
LW
|
CTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YWGQGTLVTVSS
|
CTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YWGQGTLVTVSS
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QVQLQESGPGLVKPSQTLSLTCTVS
|
GGTGGCTCCATCAGCAGTGGTGATTACTAC
|
GGSISSGDYY
|
TGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTAC
|
WSWIRQPPGKGLEWIGY
|
ATCTATTACAGTGGGAGCACC
|
IYYSGST
|
TACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGT
|
YYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCCCACGGGCTATGGTTGGGCTAC
|
AHGLWLGY
|
TGTGCCCACGGGCTATGGTTGGGCTACTGG
|
30.0
|
CAHGLWLGYW
|
10.0
|
459.921
|
17.992
|
73.749
|
125S294M126S5N
|
424S9N9M112S2N
|
436S10N38M71S
|
2.252e-131
|
0.9361
|
3.339e-17
|
100.0
|
100.0
|
100.0
|
126
|
419
|
1
|
294
|
425.0
|
433.0
|
10.0
|
18.0
|
437
|
474
|
11
|
48
|
126
|
200
|
201
|
230
|
231
|
281
|
282
|
302
|
303
|
416
|
441.0
|
473.0
|
417.0
|
440.0
|
CACGG
|
5
|
GGG
|
3.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'Q', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '34 ': 'S', '35 ': 'G', '36 ': 'D', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'S', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'Y'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'Y', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'H', '107 ': 'G', '108 ': 'L', '114 ': 'W', '115 ': 'L', '116 ': 'G', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGGTGTGTGCC-1_contig_1
|
AGCTGTGGGCTCAGAAGCAGAGTTCTGGGGTGTCTCCACCATGGCCTGGACCCCTCTCTGGCTCACTCTCCTCACTCTTTGCATAGGTTCTGTGGTTTCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCTGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-19*01
| null |
IGLJ3*02
|
TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCTGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCTGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SSELTQDPAVSVALGQTVRITCQGDSLRSYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSGNTASLTITGAQAEDEADYYCNSRDSSGNHLVFGGGTKLTVL
|
SSELTQDPAVSVALGQTVRITCQGDSLRSYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSGNTASLTITGAQAEDEADYYCNSRDSSGNHLVFGGGTKLTVL
|
1
|
290
| null | null |
291
|
325
|
TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCT
|
SSELTQDPAVSVALGQTVRITCQGDSLRSYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSGNTASLTITGAQAEDEADYYCNSRDSSGNHL
|
TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCT
|
SSELTQDPAVSVALGQTVRITCQGDSLRSYYASWYQQKPGQAPVLVIYGKNNRPSGIPDRFSGSSSGNTASLTITGAQAEDEADYYCNSRDSSGNHL
| null | null | null | null |
GGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
GGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGAC
|
SSELTQDPAVSVALGQTVRITCQGD
|
AGCCTCAGAAGCTATTAT
|
SLRSYY
|
GCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTAT
|
ASWYQQKPGQAPVLVIY
|
GGTAAAAAC
|
GKN
|
AACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGT
|
NRPSGIPDRFSGSSSGNTASLTITGAQAEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
AACTCCCGGGACAGCAGTGGTAACCATCTGGTG
|
NSRDSSGNHLV
|
TGTAACTCCCGGGACAGCAGTGGTAACCATCTGGTGTTC
|
39.0
|
CNSRDSSGNHLVF
|
13.0
|
453.689
| null |
67.981
|
97S290M246S
| null |
387S3N35M211S
|
1.971e-129
| null |
2.12e-15
|
100.0
| null |
100.0
|
98
|
387
|
1
|
290
| null | null | null | null |
388
|
422
|
4
|
38
|
98
|
172
|
173
|
190
|
191
|
241
|
242
|
250
|
251
|
358
|
392.0
|
421.0
|
359.0
|
391.0
| null |
0
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'S', '3 ': 'E', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'D', '8 ': 'P', '9 ': 'A', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'A', '15 ': 'L', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'V', '20 ': 'R', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'Q', '25 ': 'G', '26 ': 'D'}, 'cdrl1': {'27 ': 'S', '28 ': 'L', '29 ': 'R', '36 ': 'S', '37 ': 'Y', '38 ': 'Y'}, 'fwl2': {'39 ': 'A', '40 ': 'S', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'G', '57 ': 'K', '65 ': 'N'}, 'fwl3': {'66 ': 'N', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'S', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'T', '93 ': 'G', '94 ': 'A', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'N', '106 ': 'S', '107 ': 'R', '108 ': 'D', '109 ': 'S', '110 ': 'S', '113 ': 'G', '114 ': 'N', '115 ': 'H', '116 ': 'L', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGTCAATCTCT-1_contig_2
|
ATCACATAACAACCACATTCCTCCTCTAAAGAAGCCCCTGGGAGCACAGCTCATCACCATGGACTGGACCTGGAGGTTCCTCTTTGTGGTGGCAGCAGCTACAGGTGTCCAGTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGAGATGGCTACAATGACCGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-69*01
|
IGHD5-12*01
|
IGHJ3*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGAGATGGCTACAATGACCGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGANNTGGCTACNNNNNNNGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAREMATMTDAFDIWGQGTMVTVSS
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCARXXATXXDAFDIWGQGTMVTVSS
|
1
|
296
|
299.0
|
305.0
|
313
|
361
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPIFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAR
|
TGGCTAC
|
AT
|
TGGCTAC
|
AT
|
GATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
GATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGSSVKVSCKAS
|
GGAGGCACCTTCAGCAGCTATGCT
|
GGTFSSYA
|
ATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGG
|
ISWVRQAPGQGLEWMGG
|
ATCATCCCTATCTTTGGTACAGCA
|
IIPIFGTA
|
AACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACGAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
GCGAGAGAGATGGCTACAATGACCGATGCTTTTGATATC
|
AREMATMTDAFDI
|
TGTGCGAGAGAGATGGCTACAATGACCGATGCTTTTGATATCTGG
|
45.0
|
CAREMATMTDAFDIW
|
15.0
|
463.037
|
14.146
|
94.899
|
115S296M136S
|
413S10N7M127S6N
|
427S1N49M71S
|
2.607e-132
|
13.51
|
1.441e-23
|
100.0
|
100.0
|
100.0
|
116
|
411
|
1
|
296
|
414.0
|
420.0
|
11.0
|
17.0
|
428
|
476
|
2
|
50
|
116
|
190
|
191
|
214
|
215
|
265
|
266
|
289
|
290
|
403
|
443.0
|
475.0
|
404.0
|
442.0
|
GA
|
2
|
AATGACC
|
7.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'S', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'I', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'G'}, 'cdrh2': {'56 ': 'I', '57 ': 'I', '58 ': 'P', '59 ': 'I', '62 ': 'F', '63 ': 'G', '64 ': 'T', '65 ': 'A'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'T', '80 ': 'A', '81 ': 'D', '82 ': 'E', '83 ': 'S', '84 ': 'T', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'E', '108 ': 'M', '109 ': 'A', '110 ': 'T', '111 ': 'M', '112 ': 'T', '113 ': 'D', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGTCAATCTCT-1_contig_1
|
AGAGCTCTGGAGAAGAGCTGCTCAGTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACCGGAGAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-20*01
| null |
IGKJ5*01
|
GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPITFGQGTRLEIK
|
EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPITFGQGTRLEIK
|
1
|
287
| null | null |
288
|
325
|
GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACC
|
EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSP
|
GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACC
|
EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSP
| null | null | null | null |
GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVLTQSPGTLSLSPGERATLSCRAS
|
CAGAGTGTTAGCAGCAGCTAC
|
QSVSSSY
|
TTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GGTGCATCC
|
GAS
|
AGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGT
|
SRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYC
|
TTCGGCCAAGGGACACGACTGGAGATTAAA
|
FGQGTRLEIK
|
CAGCAGTATGGTAGCTCACCGATCACC
|
QQYGSSPIT
|
TGTCAGCAGTATGGTAGCTCACCGATCACCTTC
|
33.0
|
CQQYGSSPITF
|
11.0
|
449.014
| null |
73.749
|
104S287M174S3N
| null |
391S38M136S
|
4.49e-128
| null |
3.465e-17
|
100.0
| null |
100.0
|
105
|
391
|
1
|
287
| null | null | null | null |
392
|
429
|
1
|
38
|
105
|
182
|
183
|
203
|
204
|
254
|
255
|
263
|
264
|
371
|
399.0
|
428.0
|
372.0
|
398.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'G', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'L', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '30 ': 'S', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'G', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'L', '95 ': 'E', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'G', '109 ': 'S', '114 ': 'S', '115 ': 'P', '116 ': 'I', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'R', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGTCACCTTAT-1_contig_1
|
GGGGACTTTCTGAGAGTCCTGGACCTCCTGTGCAAGAACATGAAACACCTGTGGTTCTTCCTCCTGCTGGTGGCAGCTCCCAGATGGGTCCTGTCCCAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAGGTCTACGTCTTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-30-4*01
|
IGHD3-16*01
|
IGHJ3*02
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAGGTCTACGTCTTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAGNNNTACGTNNTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARGLRLDAFDIWGQGTMVTVSS
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARXXRXDAFDIWGQGTMVTVSS
|
1
|
298
|
302.0
|
306.0
|
309
|
358
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
TACGT
|
R
|
TACGT
|
R
|
TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QVQLQESGPGLVKPSQTLSLTCTVS
|
GGTGGCTCCATCAGCAGTGGTGATTACTAC
|
GGSISSGDYY
|
TGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTAC
|
WSWIRQPPGKGLEWIGY
|
ATCTATTACAGTGGGAGCACC
|
IYYSGST
|
TACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGT
|
YYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
GCCAGAGGTCTACGTCTTGATGCTTTTGATATC
|
ARGLRLDAFDI
|
TGTGCCAGAGGTCTACGTCTTGATGCTTTTGATATCTGG
|
39.0
|
CARGLRLDAFDIW
|
13.0
|
466.153
|
10.301
|
96.822
|
96S298M131S1N
|
397S10N5M123S22N
|
404S50M71S
|
2.879e-133
|
186.2
|
3.645e-24
|
100.0
|
100.0
|
100.0
|
97
|
394
|
1
|
298
|
398.0
|
402.0
|
11.0
|
15.0
|
405
|
454
|
1
|
50
|
97
|
171
|
172
|
201
|
202
|
252
|
253
|
273
|
274
|
387
|
421.0
|
453.0
|
388.0
|
420.0
|
GTC
|
3
|
CT
|
2.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'Q', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '34 ': 'S', '35 ': 'G', '36 ': 'D', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'S', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'Y'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'Y', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'L', '109 ': 'R', '110 ': 'L', '113 ': 'D', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGTCACCTTAT-1_contig_2
|
GGGGAAGCTCAGCTTCAGCTGTGGTAGAGAAGACAGGATTCAGGACAATCTCCAGCATGGCCGGCTTCCCTCTCCTCCTCACCCTCCTCACTCACTGTGCAGGGTCCTGGGCCCAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGGCTATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV1-47*01
| null |
IGLJ2*01
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGGCTATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGGNNNTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSGYVVFGGGTKLTVL
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSGXVVFGGGTKLTVL
|
1
|
293
| null | null |
297
|
334
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGG
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSG
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGG
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSG
| null | null | null | null |
TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGC
|
QSVLTQPPSASGTPGQRVTISCSGS
|
AGCTCCAACATCGGAAGTAATTAT
|
SSNIGSNY
|
GTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTAT
|
VYWYQQLPGTAPKLLIY
|
AGGAATAAT
|
RNN
|
CAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGT
|
QRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
GCAGCATGGGATGACAGCCTGAGTGGCTATGTGGTA
|
AAWDDSLSGYVV
|
TGTGCAGCATGGGATGACAGCCTGAGTGGCTATGTGGTATTC
|
42.0
|
CAAWDDSLSGYVVF
|
14.0
|
458.363
| null |
73.749
|
113S293M252S3N
| null |
409S38M211S
|
8.037000000000005e-131
| null |
4.046e-17
|
100.0
| null |
100.0
|
114
|
406
|
1
|
293
| null | null | null | null |
410
|
447
|
1
|
38
|
114
|
188
|
189
|
212
|
213
|
263
|
264
|
272
|
273
|
380
|
417.0
|
446.0
|
381.0
|
416.0
|
CTA
|
3
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'A', '12 ': 'S', '13 ': 'G', '14 ': 'T', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'S'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'N', '30 ': 'I', '35 ': 'G', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwl2': {'39 ': 'V', '40 ': 'Y', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'L', '46 ': 'P', '47 ': 'G', '48 ': 'T', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'R', '57 ': 'N', '65 ': 'N'}, 'fwl3': {'66 ': 'Q', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'S', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'A', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'A', '106 ': 'A', '107 ': 'W', '108 ': 'D', '109 ': 'D', '110 ': 'S', '112 ': 'L', '113 ': 'S', '114 ': 'G', '115 ': 'Y', '116 ': 'V', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGTCAGCAACT-1_contig_1
|
TTTTATTTTTTGGGGAGGGTCCTGCTCACATGGGAAATACTTTCTGAGAGTCCTGGACCTCCTGTGCAAGAACATGAAACACCTGTGGTTCTTCCTCCTGCTGGTGGCAGCTCCCAGATGGGTCCTGTCCCAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAGCAGCGGAGGGATACTATGATGGTAATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-30-4*01
|
IGHD3-22*01
|
IGHJ3*02
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAGCAGCGGAGGGATACTATGATGGTAATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAGNNNNNNNNNNNTACTATGATAGTAATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARAAEGYYDGNAFDIWGQGTMVTVSS
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARXXXXYYDSNAFDIWGQGTMVTVSS
|
1
|
298
|
310.0
|
322.0
|
323
|
370
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
TACTATGATGGTA
|
YYDG
|
TACTATGATAGTA
|
YYDS
|
ATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
AFDIWGQGTMVTVSS
|
ATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
AFDIWGQGTMVTVSS
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QVQLQESGPGLVKPSQTLSLTCTVS
|
GGTGGCTCCATCAGCAGTGGTGATTACTAC
|
GGSISSGDYY
|
TGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTAC
|
WSWIRQPPGKGLEWIGY
|
ATCTATTACAGTGGGAGCACC
|
IYYSGST
|
TACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGT
|
YYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
GCCAGAGCAGCGGAGGGATACTATGATGGTAATGCTTTTGATATC
|
ARAAEGYYDGNAFDI
|
TGTGCCAGAGCAGCGGAGGGATACTATGATGGTAATGCTTTTGATATCTGG
|
51.0
|
CARAAEGYYDGNAFDIW
|
17.0
|
466.153
|
19.914
|
92.976
|
130S298M143S1N
|
439S4N13M119S14N
|
452S2N48M71S
|
3.145e-133
|
0.2589
|
5.708e-23
|
100.0
|
92.308
|
100.0
|
131
|
428
|
1
|
298
|
440.0
|
452.0
|
5.0
|
17.0
|
453
|
500
|
3
|
50
|
131
|
205
|
206
|
235
|
236
|
286
|
287
|
307
|
308
|
421
|
467.0
|
499.0
|
422.0
|
466.0
|
CAGCGGAGGGA
|
11
| null |
0.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'Q', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '34 ': 'S', '35 ': 'G', '36 ': 'D', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'S', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'Y'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'Y', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'A', '108 ': 'A', '109 ': 'E', '110 ': 'G', '111 ': 'Y', '111A': 'Y', '112A': 'D', '112 ': 'G', '113 ': 'N', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGTCAGCAACT-1_contig_2
|
TGAGCGCAGAAGGCAGGACTCGGGACAATCTTCATCATGACCTGCTCCCCTCTCCTCCTCACCCTTCTCATTCACTGCACAGGGTCCTGGGCCCAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATTTATGACAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV1-51*01
| null |
IGLJ2*01
|
CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATTTATGACAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATTTATGACAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAVVFGGGTKLTVL
|
QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAVVFGGGTKLTVL
|
1
|
295
| null | null |
296
|
331
|
CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATTTATGACAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTG
|
QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSA
|
CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATTTATGACAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTG
|
QSVLTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSA
| null | null | null | null |
TGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
TGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGC
|
QSVLTQPPSVSAAPGQKVTISCSGS
|
AGCTCCAACATTGGGAATAATTAT
|
SSNIGNNY
|
GTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATTTAT
|
VSWYQQLPGTAPKLLIY
|
GACAATAAT
|
DNN
|
AAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGC
|
KRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
GGAACATGGGATAGCAGCCTGAGTGCTGTGGTA
|
GTWDSSLSAVV
|
TGCGGAACATGGGATAGCAGCCTGAGTGCTGTGGTATTC
|
39.0
|
CGTWDSSLSAVVF
|
13.0
|
461.479
| null |
69.904
|
93S295M247S1N
| null |
388S2N36M211S
|
8.93e-132
| null |
5.609e-16
|
100.0
| null |
100.0
|
94
|
388
|
1
|
295
| null | null | null | null |
389
|
424
|
3
|
38
|
94
|
168
|
169
|
192
|
193
|
243
|
244
|
252
|
253
|
360
|
394.0
|
423.0
|
361.0
|
393.0
| null |
0
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'A', '14 ': 'A', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'K', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'S'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'N', '30 ': 'I', '35 ': 'G', '36 ': 'N', '37 ': 'N', '38 ': 'Y'}, 'fwl2': {'39 ': 'V', '40 ': 'S', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'L', '46 ': 'P', '47 ': 'G', '48 ': 'T', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'D', '57 ': 'N', '65 ': 'N'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'S', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'G', '91 ': 'I', '92 ': 'T', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'T', '97 ': 'G', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'G', '106 ': 'T', '107 ': 'W', '108 ': 'D', '109 ': 'S', '110 ': 'S', '113 ': 'L', '114 ': 'S', '115 ': 'A', '116 ': 'V', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGTCATCATTC-1_contig_1
|
TGGGGGCTTTCTGAGAGTCATGGATCTCATGTGCAAGAAAATGAAGCACCTGTGGTTCTTCCTCCTGCTGGTGGCGGCTCCCAGATGGGTCCTGTCCCAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACTTGTATTTTCGGACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-39*01
|
IGHD3-10*02
|
IGHJ4*02
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACTTGTATTTTCGGACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACNNNTATGTTCGGACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARLVFSDYFDYWGQGTLVTVSS
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARXXCSDYFDYWGQGTLVTVSS
|
1
|
298
|
302.0
|
310.0
|
311
|
358
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGAC
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGAC
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
TATTTTCGG
|
FS
|
TATGTTCGG
|
CS
|
ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YFDYWGQGTLVTVSS
|
ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YFDYWGQGTLVTVSS
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QLQLQESGPGLVKPSETLSLTCTVS
|
GGTGGCTCCATCAGCAGTAGTAGTTACTAC
|
GGSISSSSYY
|
TGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGT
|
WGWIRQPPGKGLEWIGS
|
ATCTATTATAGTGGGAGCACC
|
IYYSGST
|
TACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGT
|
YYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGACTTGTATTTTCGGACTACTTTGACTAC
|
ARLVFSDYFDY
|
TGTGCGAGACTTGTATTTTCGGACTACTTTGACTACTGG
|
39.0
|
CARLVFSDYFDYW
|
13.0
|
466.153
|
12.223
|
92.976
|
97S298M131S1N
|
398S7N9M119S14N
|
407S48M71S
|
2.8849999999999998e-133
|
49.2
|
5.249e-23
|
100.0
|
88.889
|
100.0
|
98
|
395
|
1
|
298
|
399.0
|
407.0
|
8.0
|
16.0
|
408
|
455
|
1
|
48
|
98
|
172
|
173
|
202
|
203
|
253
|
254
|
274
|
275
|
388
|
422.0
|
454.0
|
389.0
|
421.0
|
TTG
|
3
| null |
0.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'L', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'E', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '34 ': 'S', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'G', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'S'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'Y', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'L', '108 ': 'V', '109 ': 'F', '110 ': 'S', '113 ': 'D', '114 ': 'Y', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGTCATCATTC-1_contig_2
|
GGGCCTTTTCTGGCCTGATCACCTGGGCATGGGCTGCTGAGAGCAGAAAGGGGAGGCAGATTGTCTCTGCAGCTGCAAGCCCAGCACCCGCCCCAGCTGCTTTGCATGTCCCTCCCAGCCGCCCTGCAGTCCAGAGCCCATATCAATGCCTGGGTCAGAGCTCTGGAGAAGAGCTGCTCAGTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACCGGAGAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCCCCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-20*01
| null |
IGKJ5*01
|
GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCCCCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPITFGQGTRLEIK
|
EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPITFGQGTRLEIK
|
1
|
287
| null | null |
288
|
325
|
GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCCCC
|
EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSP
|
GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACC
|
EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSP
| null | null | null | null |
GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVLTQSPGTLSLSPGERATLSCRAS
|
CAGAGTGTTAGCAGCAGCTAC
|
QSVSSSY
|
TTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GGTGCATCC
|
GAS
|
AGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGT
|
SRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYC
|
TTCGGCCAAGGGACACGACTGGAGATTAAA
|
FGQGTRLEIK
|
CAGCAGTATGGTAGCTCCCCGATCACC
|
QQYGSSPIT
|
TGTCAGCAGTATGGTAGCTCCCCGATCACCTTC
|
33.0
|
CQQYGSSPITF
|
11.0
|
445.898
| null |
73.749
|
260S287M174S3N
| null |
547S38M136S
|
4.999e-127
| null |
4.44e-17
|
99.652
| null |
100.0
|
261
|
547
|
1
|
287
| null | null | null | null |
548
|
585
|
1
|
38
|
261
|
338
|
339
|
359
|
360
|
410
|
411
|
419
|
420
|
527
|
555.0
|
584.0
|
528.0
|
554.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'G', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'L', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '30 ': 'S', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'G', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'L', '95 ': 'E', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'G', '109 ': 'S', '114 ': 'S', '115 ': 'P', '116 ': 'I', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'R', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGTCGATAGAA-1_contig_2
|
TGGGGAGGGTCCTGCTCACATGGGAAATACTTTCTGAGAGTCCTGGACCTCCTGTGCAAGAACATGAAACACCTGTGGTTCTTCCTCCTGCTGGTGGCAGCTCCCAGATGGGTCCTGTCCCAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGGTTACTACTGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGTGCGAGGGTGGGTAGTATTACTATGGCTCACCGGTTCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-31*03
|
IGHD3-10*01
|
IGHJ4*02
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGGTTACTACTGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGTGCGAGGGTGGGTAGTATTACTATGGCTCACCGGTTCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGGTTACTACTGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGTGCGAGNNNNNNNNGTATTACTATGGNNNNNNNNNNCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGGYYWSWIRQHPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARVGSITMAHRFWGQGTLVTVSS
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGGYYWSWIRQHPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAXXXXITMXXXXWGQGTLVTVSS
|
1
|
296
|
305.0
|
316.0
|
327
|
361
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGGTTACTACTGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGTGCGAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGGYYWSWIRQHPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCA
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGGTTACTACTGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGTGCGAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGGYYWSWIRQHPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCA
|
GTATTACTATGG
|
ITM
|
GTATTACTATGG
|
ITM
|
CTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WGQGTLVTVSS
|
CTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WGQGTLVTVSS
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QVQLQESGPGLVKPSQTLSLTCTVS
|
GGTGGCTCCATCAGCAGTGGTGGTTACTAC
|
GGSISSGGYY
|
TGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTAC
|
WSWIRQHPGKGLEWIGY
|
ATCTATTACAGTGGGAGCACC
|
IYYSGST
|
TACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGT
|
YYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGGGTGGGTAGTATTACTATGGCTCACCGGTTC
|
ARVGSITMAHRF
|
TGTGCGAGGGTGGGTAGTATTACTATGGCTCACCGGTTCTGG
|
42.0
|
CARVGSITMAHRFW
|
14.0
|
463.037
|
23.76
|
67.981
|
120S296M136S3N
|
424S12M116S19N
|
446S13N35M71S
|
2.632e-132
|
0.0174
|
1.844e-15
|
100.0
|
100.0
|
100.0
|
121
|
416
|
1
|
296
|
425.0
|
436.0
|
1.0
|
12.0
|
447
|
481
|
14
|
48
|
121
|
195
|
196
|
225
|
226
|
276
|
277
|
297
|
298
|
411
|
448.0
|
480.0
|
412.0
|
447.0
|
GGTGGGTA
|
8
|
CTCACCGGTT
|
10.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'Q', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '34 ': 'S', '35 ': 'G', '36 ': 'G', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'S', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'H', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'Y'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'Y', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'V', '108 ': 'G', '109 ': 'S', '110 ': 'I', '112 ': 'T', '113 ': 'M', '114 ': 'A', '115 ': 'H', '116 ': 'R', '117 ': 'F'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGTCGATAGAA-1_contig_1
|
ATCTCCTCCAGCAGCAGCCTCTGACTCTGCTGATTTGCATCATGGGCCGCTCTCTCCAGCAAGGGGATAAGAGAGGCCTGGGAGGAACCTGCTCAGTCTGGGCCTAAGGAAGCAGCACTGGTGGTGCCTCAGCCATGGCCTGGACCGTTCTCCTCCTCGGCCTCCTCTCTCACTGCACAGGCTCTGTGACCTCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCATCCCGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-21*02
| null |
IGLJ2*01
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCATCCCGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCATCCNGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDHPVVFGGGTKLTVL
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDHPVVFGGGTKLTVL
|
1
|
290
| null | null |
292
|
328
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCATCC
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDHP
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCATCC
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDHP
| null | null | null | null |
GTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
GTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAAC
|
SYVLTQPPSVSVAPGQTARITCGGN
|
AACATTGGAAGTAAAAGT
|
NIGSKS
|
GTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTAT
|
VHWYQQKPGQAPVLVVY
|
GATGATAGC
|
DDS
|
GACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGT
|
DRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGGTGTGGGATAGTAGTAGTGATCATCCCGTGGTA
|
QVWDSSSDHPVV
|
TGTCAGGTGTGGGATAGTAGTAGTGATCATCCCGTGGTATTC
|
42.0
|
CQVWDSSSDHPVVF
|
14.0
|
453.689
| null |
71.827
|
191S290M249S
| null |
482S1N37M211S
|
2.287e-129
| null |
1.705e-16
|
100.0
| null |
100.0
|
192
|
481
|
1
|
290
| null | null | null | null |
483
|
519
|
2
|
38
|
192
|
266
|
267
|
284
|
285
|
335
|
336
|
344
|
345
|
452
|
489.0
|
518.0
|
453.0
|
488.0
|
C
|
1
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'A', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'R', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'G', '25 ': 'G', '26 ': 'N'}, 'cdrl1': {'27 ': 'N', '28 ': 'I', '29 ': 'G', '36 ': 'S', '37 ': 'K', '38 ': 'S'}, 'fwl2': {'39 ': 'V', '40 ': 'H', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'V', '55 ': 'Y'}, 'cdrl2': {'56 ': 'D', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'D', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'N', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'V', '95 ': 'E', '96 ': 'A', '97 ': 'G', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'V', '107 ': 'W', '108 ': 'D', '109 ': 'S', '110 ': 'S', '112 ': 'S', '113 ': 'D', '114 ': 'H', '115 ': 'P', '116 ': 'V', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGTCGCACTCT-1_contig_2
|
CAATCTGTTAACGTGTTTTATTATTTGGGGACTCAACAACCACATCTGTCCTCTAGAGAAAACCCTGTGAGCACAGCTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCTACAAGTGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGGCCAGCAACCGAGCAGCCATTCCCGTTGGGTGTACGATTTTTGGAGTGGTTACCGGCCCCCCGGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-8*01
|
IGHD3-3*01
|
IGHJ5*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGGCCAGCAACCGAGCAGCCATTCCCGTTGGGTGTACGATTTTTGGAGTGGTTACCGGCCCCCCGGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGATTTTTGGAGTGGTTANNNNNNNNNNNGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARGQQPSSHSRWVYDFWSGYRPPGFDPWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARGXXXXXXXXXXYDFWSGXXXXXFDPWGQGTLVTVSS
|
1
|
296
|
328.0
|
347.0
|
359
|
403
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYDINWVRQATGQGLEWMGWMNPNSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARG
|
TACGATTTTTGGAGTGGTTA
|
YDFWSG
|
TACGATTTTTGGAGTGGTTA
|
YDFWSG
|
GGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDPWGQGTLVTVSS
|
GGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDPWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCAGTTATGAT
|
GYTFTSYD
|
ATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGG
|
INWVRQATGQGLEWMGW
|
ATGAACCCTAACAGTGGTAACACA
|
MNPNSGNT
|
GGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
GYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGGCCAGCAACCGAGCAGCCATTCCCGTTGGGTGTACGATTTTTGGAGTGGTTACCGGCCCCCCGGGTTCGACCCC
|
ARGQQPSSHSRWVYDFWSGYRPPGFDP
|
TGTGCGAGAGGCCAGCAACCGAGCAGCCATTCCCGTTGGGTGTACGATTTTTGGAGTGGTTACCGGCCCCCCGGGTTCGACCCCTGG
|
87.0
|
CARGQQPSSHSRWVYDFWSGYRPPGFDPW
|
29.0
|
463.037
|
39.141
|
87.208
|
142S296M178S
|
469S4N20M127S7N
|
500S6N45M71S
|
2.9370000000000004e-132
|
4.558e-07
|
3.36e-21
|
100.0
|
100.0
|
100.0
|
143
|
438
|
1
|
296
|
470.0
|
489.0
|
5.0
|
24.0
|
501
|
545
|
7
|
51
|
143
|
217
|
218
|
241
|
242
|
292
|
293
|
316
|
317
|
430
|
512.0
|
544.0
|
431.0
|
511.0
|
CCAGCAACCGAGCAGCCATTCCCGTTGGGTG
|
31
|
CCGGCCCCCCG
|
11.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'S', '37 ': 'Y', '38 ': 'D'}, 'fwh2': {'39 ': 'I', '40 ': 'N', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'T', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'M', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'N', '65 ': 'T'}, 'fwh3': {'66 ': 'G', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'N', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'Q', '109 ': 'Q', '110 ': 'P', '111 ': 'S', '111A': 'S', '111B': 'H', '111C': 'S', '111D': 'R', '111E': 'W', '111F': 'V', '111G': 'Y', '112G': 'D', '112F': 'F', '112E': 'W', '112D': 'S', '112C': 'G', '112B': 'Y', '112A': 'R', '112 ': 'P', '113 ': 'P', '114 ': 'G', '115 ': 'F', '116 ': 'D', '117 ': 'P'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGTCGCACTCT-1_contig_1
|
AGTCTGGGCCTAAGGAAGCAGCACTGGTGGTGCCTCAGCCATGGCCTGGACCGTTCTCCTCCTCGGCCTCCTCTCTCACTGCACAGGCTCTGTGACCTCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCCCCCCTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAGGTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-21*02
| null |
IGLJ1*01
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCCCCCCTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCNNNNNTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDPPYVFGTGTKVTVL
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDXXYVFGTGTKVTVL
|
1
|
286
| null | null |
292
|
328
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATC
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSD
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATC
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSD
| null | null | null | null |
TATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
YVFGTGTKVTVL
|
TATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
YVFGTGTKVTVL
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAAC
|
SYVLTQPPSVSVAPGQTARITCGGN
|
AACATTGGAAGTAAAAGT
|
NIGSKS
|
GTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTAT
|
VHWYQQKPGQAPVLVVY
|
GATGATAGC
|
DDS
|
GACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGT
|
DRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYC
|
TTCGGAACTGGGACCAAGGTCACCGTCCTA
|
FGTGTKVTVL
|
CAGGTGTGGGATAGTAGTAGTGATCCCCCCTATGTC
|
QVWDSSSDPPYV
|
TGTCAGGTGTGGGATAGTAGTAGTGATCCCCCCTATGTCTTC
|
42.0
|
CQVWDSSSDPPYVF
|
14.0
|
447.456
| null |
71.827
|
97S286M253S4N
| null |
388S1N37M211S
|
1.4889999999999999e-127
| null |
1.482e-16
|
100.0
| null |
100.0
|
98
|
383
|
1
|
286
| null | null | null | null |
389
|
425
|
2
|
38
|
98
|
172
|
173
|
190
|
191
|
241
|
242
|
250
|
251
|
358
|
395.0
|
424.0
|
359.0
|
394.0
|
CCCCC
|
5
| null | null |
GTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'A', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'R', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'G', '25 ': 'G', '26 ': 'N'}, 'cdrl1': {'27 ': 'N', '28 ': 'I', '29 ': 'G', '36 ': 'S', '37 ': 'K', '38 ': 'S'}, 'fwl2': {'39 ': 'V', '40 ': 'H', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'V', '55 ': 'Y'}, 'cdrl2': {'56 ': 'D', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'D', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'N', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'V', '95 ': 'E', '96 ': 'A', '97 ': 'G', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'V', '107 ': 'W', '108 ': 'D', '109 ': 'S', '110 ': 'S', '112 ': 'S', '113 ': 'D', '114 ': 'P', '115 ': 'P', '116 ': 'Y', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'T', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGTCGGTCCGA-1_contig_1
|
ATCATCCAACAACCACATCCCTTCTCTACAGAAGCCTCTGAGAGGAAAGTTCTTCACCATGGACTGGACCTGGAGGGTCTTCTGCTTGCTGGCTGTAGCTCCAGGTGCTCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCTGGATACACCTTCACCAGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAACCCTAGTGGTGGTAGCACAAGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGATCTAATACTCTACGGGTGGGGGGGAGGATTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-46*01
|
IGHD3-16*01
|
IGHJ5*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCTGGATACACCTTCACCAGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAACCCTAGTGGTGGTAGCACAAGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGATCTAATACTCTACGGGTGGGGGGGAGGATTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCTGGATACACCTTCACCAGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAACCCTAGTGGTGGTAGCACAAGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGANNNNNNNNNNNNNNNNNNNGGGGGAGNNTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDLILYGWGGGFDPWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARXXXXXXXGGXFDPWGQGTLVTVSS
|
1
|
296
|
316.0
|
322.0
|
325
|
367
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCTGGATACACCTTCACCAGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAACCCTAGTGGTGGTAGCACAAGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCTGGATACACCTTCACCAGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAACCCTAGTGGTGGTAGCACAAGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCAR
|
GGGGGAG
|
GG
|
GGGGGAG
|
GG
|
TTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDPWGQGTLVTVSS
|
TTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDPWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCAGCTACTAT
|
GYTFTSYY
|
ATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATA
|
MHWVRQAPGQGLEWMGI
|
ATCAACCCTAGTGGTGGTAGCACA
|
INPSGGST
|
AGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
SYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGATCTAATACTCTACGGGTGGGGGGGAGGATTCGACCCC
|
ARDLILYGWGGGFDP
|
TGTGCGAGAGATCTAATACTCTACGGGTGGGGGGGAGGATTCGACCCCTGG
|
51.0
|
CARDLILYGWGGGFDPW
|
17.0
|
463.037
|
14.146
|
83.363
|
115S296M142S
|
430S17N7M116S13N
|
439S8N43M71S
|
2.637e-132
|
13.66
|
4.327e-20
|
100.0
|
100.0
|
100.0
|
116
|
411
|
1
|
296
|
431.0
|
437.0
|
18.0
|
24.0
|
440
|
482
|
9
|
51
|
116
|
190
|
191
|
214
|
215
|
265
|
266
|
289
|
290
|
403
|
449.0
|
481.0
|
404.0
|
448.0
|
TCTAATACTCTACGGGTGG
|
19
|
GA
|
2.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'S', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'I'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'P', '59 ': 'S', '62 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'S', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'T', '85 ': 'S', '86 ': 'T', '87 ': 'V', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'D', '108 ': 'L', '109 ': 'I', '110 ': 'L', '111 ': 'Y', '111A': 'G', '112A': 'W', '112 ': 'G', '113 ': 'G', '114 ': 'G', '115 ': 'F', '116 ': 'D', '117 ': 'P'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGTCGGTCCGA-1_contig_2
|
GGGGTCACAAGAGGCAGCGCTCTCGGGACGTCTCCACCATGGCCTGGGCTCTGCTGCTCCTCACCCTCCTCACTCAGGACACAGGGTCCTGGGCCCAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTTATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV2-23*02
| null |
IGLJ2*01
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTTATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTNNTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSALTQPASVSGSPGQSITISCTGTSSDVGSYNLVSWYQQHPGKAPKLMIYEVSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCCSYAGSYVVFGGGTKLTVL
|
QSALTQPASVSGSPGQSITISCTGTSSDVGSYNLVSWYQQHPGKAPKLMIYEVSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCCSYAGSXVVFGGGTKLTVL
|
1
|
288
| null | null |
291
|
328
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGT
|
QSALTQPASVSGSPGQSITISCTGTSSDVGSYNLVSWYQQHPGKAPKLMIYEVSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCCSYAGS
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGT
|
QSALTQPASVSGSPGQSITISCTGTSSDVGSYNLVSWYQQHPGKAPKLMIYEVSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCCSYAGS
| null | null | null | null |
TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACC
|
QSALTQPASVSGSPGQSITISCTGT
|
AGCAGTGATGTTGGGAGTTATAACCTT
|
SSDVGSYNL
|
GTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTAT
|
VSWYQQHPGKAPKLMIY
|
GAGGTCAGT
|
EVS
|
AAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGC
|
KRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
TGCTCATATGCAGGTAGTTATGTGGTA
|
CSYAGSYVV
|
TGCTGCTCATATGCAGGTAGTTATGTGGTATTC
|
33.0
|
CCSYAGSYVVF
|
11.0
|
450.572
| null |
73.749
|
95S288M251S9N
| null |
385S38M211S
|
1.7120000000000002e-128
| null |
3.896e-17
|
100.0
| null |
100.0
|
96
|
383
|
1
|
288
| null | null | null | null |
386
|
423
|
1
|
38
|
96
|
170
|
171
|
197
|
198
|
248
|
249
|
257
|
258
|
365
|
393.0
|
422.0
|
366.0
|
392.0
|
TA
|
2
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'A', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'A', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'G', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'S', '19 ': 'I', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'T', '25 ': 'G', '26 ': 'T'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'D', '30 ': 'V', '31 ': 'G', '35 ': 'S', '36 ': 'Y', '37 ': 'N', '38 ': 'L'}, 'fwl2': {'39 ': 'V', '40 ': 'S', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'H', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'M', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'E', '57 ': 'V', '65 ': 'S'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'S', '74 ': 'N', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'C', '106 ': 'S', '107 ': 'Y', '108 ': 'A', '109 ': 'G', '114 ': 'S', '115 ': 'Y', '116 ': 'V', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGATGTCTTGTTTG-1_contig_2
|
AGCTCTGAGAGAGGAGCCTTAGCCCTGGATTCCAAGGCCTATCCACTTGGTGATCAGCACTGAGCACCGAGGATTCACCATGGAACTGGGGCTCCGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAAGAACATTACTATGATAGTAGTGGTTATTATCAGGGTGTGGGTGTGGGTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-21*01
|
IGHD3-22*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAAGAACATTACTATGATAGTAGTGGTTATTATCAGGGTGTGGGTGTGGGTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGANNNNNATTACTATGATAGTAGTGGTTATTANNNNNNNNNNNNNNNNNNTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAREEHYYDSSGYYQGVGVGDYWGQGTLVTVSS
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARXXXYYDSSGYXXXXXXXDYWGQGTLVTVSS
|
1
|
296
|
302.0
|
326.0
|
345
|
385
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
ATTACTATGATAGTAGTGGTTATTA
|
YYDSSGY
|
ATTACTATGATAGTAGTGGTTATTA
|
YYDSSGY
|
TGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
TGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVKPGGSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATAGC
|
GFTFSSYS
|
ATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCC
|
MNWVRQAPGKGLEWVSS
|
ATTAGTAGTAGTAGTAGTTACATA
|
ISSSSSYI
|
TACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGAAGAACATTACTATGATAGTAGTGGTTATTATCAGGGTGTGGGTGTGGGTGACTAC
|
AREEHYYDSSGYYQGVGVGDY
|
TGTGCGAGAGAAGAACATTACTATGATAGTAGTGGTTATTATCAGGGTGTGGGTGTGGGTGACTACTGG
|
69.0
|
CAREEHYYDSSGYYQGVGVGDYW
|
23.0
|
463.037
|
48.755
|
79.518
|
136S296M160S
|
437S2N25M130S4N
|
480S7N41M71S
|
2.817e-132
|
5.589e-10
|
6.667e-19
|
100.0
|
100.0
|
100.0
|
137
|
432
|
1
|
296
|
438.0
|
462.0
|
3.0
|
27.0
|
481
|
521
|
8
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
488.0
|
520.0
|
425.0
|
487.0
|
AGAAC
|
5
|
TCAGGGTGTGGGTGTGGG
|
18.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'S'}, 'fwh2': {'39 ': 'M', '40 ': 'N', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'S'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'S', '59 ': 'S', '62 ': 'S', '63 ': 'S', '64 ': 'Y', '65 ': 'I'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'E', '108 ': 'E', '109 ': 'H', '110 ': 'Y', '111 ': 'Y', '111A': 'D', '111B': 'S', '111C': 'S', '111D': 'G', '112D': 'Y', '112C': 'Y', '112B': 'Q', '112A': 'G', '112 ': 'V', '113 ': 'G', '114 ': 'V', '115 ': 'G', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGATGTCTTGTTTG-1_contig_1
|
GGGAGAGCCCTGGGGAGGAACTGCTCAGTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACCGGAGAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-11*01
| null |
IGKJ4*01
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPLTFGGGTKVEIK
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPLTFGGGTKVEIK
|
1
|
286
| null | null |
287
|
322
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWP
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWP
| null | null | null | null |
TCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
TFGGGTKVEIK
|
TCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
TFGGGTKVEIK
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVLTQSPATLSLSPGERATLSCRAS
|
CAGAGTGTTAGCAGCTAC
|
QSVSSY
|
TTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GATGCATCC
|
DAS
|
AACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGT
|
NRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAGCAGCGTAGCAACTGGCCTCTCACT
|
QQRSNWPLT
|
TGTCAGCAGCGTAGCAACTGGCCTCTCACTTTC
|
33.0
|
CQQRSNWPLTF
|
11.0
|
447.456
| null |
69.904
|
107S286M172S1N
| null |
393S2N36M136S
|
1.322e-127
| null |
4.98e-16
|
100.0
| null |
100.0
|
108
|
393
|
1
|
286
| null | null | null | null |
394
|
429
|
3
|
38
|
108
|
185
|
186
|
203
|
204
|
254
|
255
|
263
|
264
|
371
|
399.0
|
428.0
|
372.0
|
398.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'A', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'L', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'A', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'E', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'R', '108 ': 'S', '109 ': 'N', '114 ': 'W', '115 ': 'P', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAAAGCGATCCC-1_contig_1
|
GGGAGAGGAGCCCCAGCCTTGGGATTCCCAAGTGTTTTCATTCAGTGATCAGGACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGATTTTCCTTGCTGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGAGTACCATGACTACGGTGACTACGAGTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-15*01
|
IGHD4-17*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGAGTACCATGACTACGGTGACTACGAGTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGANNNNNNTGACTACGGTGACTACNNNTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTEYHDYGDYEFDYWGQGTLVTVSS
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTXXXDYGDYXFDYWGQGTLVTVSS
|
1
|
302
|
309.0
|
324.0
|
328
|
370
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTT
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTT
|
TGACTACGGTGACTAC
|
DYGDY
|
TGACTACGGTGACTAC
|
DYGDY
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVKPGGSLRLSCAAS
|
GGATTCACTTTCAGTAACGCCTGG
|
GFTFSNAW
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGT
|
MSWVRQAPGKGLEWVGR
|
ATTAAAAGCAAAACTGATGGTGGGACAACA
|
IKSKTDGGTT
|
GACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGT
|
DYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
ACCACAGAGTACCATGACTACGGTGACTACGAGTTTGACTAC
|
TTEYHDYGDYEFDY
|
TGTACCACAGAGTACCATGACTACGGTGACTACGAGTTTGACTACTGG
|
48.0
|
CTTEYHDYGDYEFDYW
|
16.0
|
472.386
|
31.45
|
83.363
|
131S302M139S
|
439S16M117S
|
458S5N43M71S
|
4.191e-135
|
8.734e-05
|
4.479e-20
|
100.0
|
100.0
|
100.0
|
132
|
433
|
1
|
302
|
440.0
|
455.0
|
1.0
|
16.0
|
459
|
501
|
6
|
48
|
132
|
206
|
207
|
230
|
231
|
281
|
282
|
311
|
312
|
425
|
468.0
|
500.0
|
426.0
|
467.0
|
GTACCA
|
6
|
GAG
|
3.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'N', '37 ': 'A', '38 ': 'W'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'K', '58 ': 'S', '59 ': 'K', '60 ': 'T', '61 ': 'D', '62 ': 'G', '63 ': 'G', '64 ': 'T', '65 ': 'T'}, 'fwh3': {'66 ': 'D', '67 ': 'Y', '68 ': 'A', '69 ': 'A', '70 ': 'P', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'D', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'K', '96 ': 'T', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'T', '106 ': 'T', '107 ': 'E', '108 ': 'Y', '109 ': 'H', '110 ': 'D', '111 ': 'Y', '112A': 'G', '112 ': 'D', '113 ': 'Y', '114 ': 'E', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAAAGCGATCCC-1_contig_2
|
GAGATAAAAGCTCAGCTCTACCCTTGCCTTGACTGATCAGGACTCCTCAGTTCACCTTCTCACAATGAGGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCTCTGGGTCCCAGGATCCAGTGGGGATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV2-30*01
| null |
IGKJ1*01
|
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
DVVMTQSPLSLPVTLGQPASISCRSSQSLVYSDGNTYLNWFQQRPGQSPRRLIYKVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGTHWPPWTFGQGTKVEIK
|
DVVMTQSPLSLPVTLGQPASISCRSSQSLVYSDGNTYLNWFQQRPGQSPRRLIYKVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGTHWPPWTFGQGTKVEIK
|
1
|
302
| null | null |
303
|
340
|
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCTCC
|
DVVMTQSPLSLPVTLGQPASISCRSSQSLVYSDGNTYLNWFQQRPGQSPRRLIYKVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGTHWPP
|
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCTCC
|
DVVMTQSPLSLPVTLGQPASISCRSSQSLVYSDGNTYLNWFQQRPGQSPRRLIYKVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGTHWPP
| null | null | null | null |
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGT
|
DVVMTQSPLSLPVTLGQPASISCRSS
|
CAAAGCCTCGTATACAGTGATGGAAACACCTAC
|
QSLVYSDGNTY
|
TTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTAT
|
LNWFQQRPGQSPRRLIY
|
AAGGTTTCT
|
KVS
|
AACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGC
|
NRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
ATGCAAGGTACACACTGGCCTCCGTGGACG
|
MQGTHWPPWT
|
TGCATGCAAGGTACACACTGGCCTCCGTGGACGTTC
|
36.0
|
CMQGTHWPPWTF
|
12.0
|
472.386
| null |
73.749
|
124S302M174S
| null |
426S38M136S
|
4.383e-135
| null |
3.683e-17
|
100.0
| null |
100.0
|
125
|
426
|
1
|
302
| null | null | null | null |
427
|
464
|
1
|
38
|
125
|
202
|
203
|
235
|
236
|
286
|
287
|
295
|
296
|
403
|
434.0
|
463.0
|
404.0
|
433.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'V', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'L', '10 ': 'S', '11 ': 'L', '12 ': 'P', '13 ': 'V', '14 ': 'T', '15 ': 'L', '16 ': 'G', '17 ': 'Q', '18 ': 'P', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'S', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'L', '30 ': 'V', '31 ': 'Y', '32 ': 'S', '34 ': 'D', '35 ': 'G', '36 ': 'N', '37 ': 'T', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'F', '43 ': 'Q', '44 ': 'Q', '45 ': 'R', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'S', '50 ': 'P', '51 ': 'R', '52 ': 'R', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'K', '57 ': 'V', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'D', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'K', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'V', '95 ': 'E', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'V', '100 ': 'G', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'M', '106 ': 'Q', '107 ': 'G', '108 ': 'T', '109 ': 'H', '113 ': 'W', '114 ': 'P', '115 ': 'P', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAAAGGACAGAA-1_contig_2
|
GAGCTCTGGGAGAGGAGCCCAGCACTAGAAGTCGGCGGTGTTTCCATTCGGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTCCTCGTTGCTCTTTTAAGAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAAATACAGCTATGGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-33*01
|
IGHD5-18*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAAATACAGCTATGGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGANATACAGCTATGGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARNTAMVDYWGQGTLVTVSS
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARXTAMVDYWGQGTLVTVSS
|
1
|
294
|
296.0
|
307.0
|
308
|
349
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGA
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGA
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR
|
ATACAGCTATGG
|
TAM
|
ATACAGCTATGG
|
TAM
|
TTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
TTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCT
|
QVQLVESGGGVVQPGRSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATGGC
|
GFTFSSYG
|
ATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTT
|
MHWVRQAPGKGLEWVAV
|
ATATGGTATGATGGAAGTAATAAA
|
IWYDGSNK
|
TACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAAATACAGCTATGGTTGACTAC
|
ARNTAMVDY
|
TGTGCGAGAAATACAGCTATGGTTGACTACTGG
|
33.0
|
CARNTAMVDYW
|
11.0
|
459.921
|
23.76
|
81.44
|
137S294M126S2N
|
432S4N12M113S4N
|
444S6N42M71S
|
2.304e-131
|
0.01756
|
1.653e-19
|
100.0
|
100.0
|
100.0
|
138
|
431
|
1
|
294
|
433.0
|
444.0
|
5.0
|
16.0
|
445
|
486
|
7
|
48
|
138
|
212
|
213
|
236
|
237
|
287
|
288
|
311
|
312
|
425
|
453.0
|
485.0
|
426.0
|
452.0
|
A
|
1
| null |
0.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'V', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'G'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'W', '58 ': 'Y', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'N', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'N', '108 ': 'T', '109 ': 'A', '114 ': 'M', '115 ': 'V', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAAAGGACAGAA-1_contig_1
|
AGTCTGGGCCTAAGGAAGCAGCACTGGTGGTGCCTCAGCCATGGCCTGGACCGTTCTCCTCCTCGGCCTCCTCTCTCACTGCACAGGCTCTGTGACCTCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCATTATTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-21*02
| null |
IGLJ3*02
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCATTATTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCATNNTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDHYWVFGGGTKLTVL
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDHXWVFGGGTKLTVL
|
1
|
288
| null | null |
291
|
328
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCAT
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDH
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTATGATGATAGCGACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGTCAGGTGTGGGATAGTAGTAGTGATCAT
|
SYVLTQPPSVSVAPGQTARITCGGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQVWDSSSDH
| null | null | null | null |
TTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
TTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
TCCTATGTGCTGACTCAGCCACCCTCGGTGTCAGTGGCCCCAGGACAGACGGCCAGGATTACCTGTGGGGGAAAC
|
SYVLTQPPSVSVAPGQTARITCGGN
|
AACATTGGAAGTAAAAGT
|
NIGSKS
|
GTGCACTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTCGTCTAT
|
VHWYQQKPGQAPVLVVY
|
GATGATAGC
|
DDS
|
GACCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGGCCACCCTGACCATCAGCAGGGTCGAAGCCGGGGATGAGGCCGACTATTACTGT
|
DRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGGTGTGGGATAGTAGTAGTGATCATTATTGGGTG
|
QVWDSSSDHYWV
|
TGTCAGGTGTGGGATAGTAGTAGTGATCATTATTGGGTGTTC
|
42.0
|
CQVWDSSSDHYWVF
|
14.0
|
450.572
| null |
73.749
|
97S288M251S2N
| null |
387S38M211S
|
1.7170000000000002e-128
| null |
3.909e-17
|
100.0
| null |
100.0
|
98
|
385
|
1
|
288
| null | null | null | null |
388
|
425
|
1
|
38
|
98
|
172
|
173
|
190
|
191
|
241
|
242
|
250
|
251
|
358
|
395.0
|
424.0
|
359.0
|
394.0
|
TA
|
2
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'A', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'R', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'G', '25 ': 'G', '26 ': 'N'}, 'cdrl1': {'27 ': 'N', '28 ': 'I', '29 ': 'G', '36 ': 'S', '37 ': 'K', '38 ': 'S'}, 'fwl2': {'39 ': 'V', '40 ': 'H', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'V', '55 ': 'Y'}, 'cdrl2': {'56 ': 'D', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'D', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'N', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'V', '95 ': 'E', '96 ': 'A', '97 ': 'G', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'V', '107 ': 'W', '108 ': 'D', '109 ': 'S', '110 ': 'S', '112 ': 'S', '113 ': 'D', '114 ': 'H', '115 ': 'Y', '116 ': 'W', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAAAGGTGGGTT-1_contig_2
|
TGGGGCTTTCTGAGAGTCATGGATCTCATGTGCAAGAAAATGAAGCACCTGTGGTTCTTCCTCCTGCTGGTGGCGGCTCCCAGATGGGTCCTGTCCCAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGATATGCCTCCTTTATTGTGGTGGTGACTGGCCGGGGCTCGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-39*01
|
IGHD2-21*02
|
IGHJ6*02
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGATATGCCTCCTTTATTGTGGTGGTGACTGGCCGGGGCTCGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGANNNNNNNNNNNTATTGTGGTGGTGACTGNNNNNNNNNCGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAICLLYCGGDWPGLGMDVWGQGTTVTVSS
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAXXXXYCGGDXXXXGMDVWGQGTTVTVSS
|
1
|
295
|
307.0
|
323.0
|
333
|
378
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGA
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCA
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGA
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCA
|
TATTGTGGTGGTGACTG
|
YCGGD
|
TATTGTGGTGGTGACTG
|
YCGGD
|
CGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
GMDVWGQGTTVTVSS
|
CGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
GMDVWGQGTTVTVSS
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QLQLQESGPGLVKPSETLSLTCTVS
|
GGTGGCTCCATCAGCAGTAGTAGTTACTAC
|
GGSISSSSYY
|
TGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGT
|
WGWIRQPPGKGLEWIGS
|
ATCTATTATAGTGGGAGCACC
|
IYYSGST
|
TACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGT
|
YYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGATATGCCTCCTTTATTGTGGTGGTGACTGGCCGGGGCTCGGTATGGACGTC
|
AICLLYCGGDWPGLGMDV
|
TGTGCGATATGCCTCCTTTATTGTGGTGGTGACTGGCCGGGGCTCGGTATGGACGTCTGG
|
60.0
|
CAICLLYCGGDWPGLGMDVW
|
20.0
|
461.479
|
33.373
|
89.131
|
96S295M155S4N
|
402S4N17M127S7N
|
428S16N46M72S
|
7.662e-132
|
2.197e-05
|
7.838e-22
|
100.0
|
100.0
|
100.0
|
97
|
391
|
1
|
295
|
403.0
|
419.0
|
5.0
|
21.0
|
429
|
474
|
17
|
62
|
97
|
171
|
172
|
201
|
202
|
252
|
253
|
273
|
274
|
387
|
442.0
|
474.0
|
388.0
|
441.0
|
TATGCCTCCTT
|
11
|
GCCGGGGCT
|
9.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'L', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'E', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '34 ': 'S', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'G', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'S'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'Y', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'I', '107 ': 'C', '108 ': 'L', '109 ': 'L', '110 ': 'Y', '111 ': 'C', '111A': 'G', '111B': 'G', '112C': 'D', '112B': 'W', '112A': 'P', '112 ': 'G', '113 ': 'L', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAAAGGTGGGTT-1_contig_1
|
CTGGGCCTCAGGAAGCAGCATCGGAGGTGCCTCAGCCATGGCATGGATCCCTCTCTTCCTCGGCGTCCTTGCTTACTGCACAGGTTCCGTGGCCTCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGCGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-1*01
| null |
IGLJ2*01
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGCGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGCGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTAVFGGGTKLTVL
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTAVFGGGTKLTVL
|
1
|
284
| null | null |
285
|
319
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGC
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTA
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGC
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTA
| null | null | null | null |
GGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
GGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGAT
|
SYELTQPPSVSVSPGQTASITCSGD
|
AAATTGGGGGATAAATAT
|
KLGDKY
|
GCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTAT
|
ACWYQQKPGQSPVLVIY
|
CAAGATAGC
|
QDS
|
AAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGT
|
KRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGGCGTGGGACAGCAGCACTGCGGTA
|
QAWDSSTAV
|
TGTCAGGCGTGGGACAGCAGCACTGCGGTATTC
|
33.0
|
CQAWDSSTAVF
|
11.0
|
444.34
| null |
67.981
|
94S284M246S1N
| null |
378S3N35M211S
|
1.266e-126
| null |
2.089e-15
|
100.0
| null |
100.0
|
95
|
378
|
1
|
284
| null | null | null | null |
379
|
413
|
4
|
38
|
95
|
169
|
170
|
187
|
188
|
238
|
239
|
247
|
248
|
355
|
383.0
|
412.0
|
356.0
|
382.0
| null |
0
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'E', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'D'}, 'cdrl1': {'27 ': 'K', '28 ': 'L', '29 ': 'G', '36 ': 'D', '37 ': 'K', '38 ': 'Y'}, 'fwl2': {'39 ': 'A', '40 ': 'C', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'S', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'Q', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'N', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'T', '95 ': 'Q', '96 ': 'A', '97 ': 'M', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'A', '107 ': 'W', '108 ': 'D', '109 ': 'S', '114 ': 'S', '115 ': 'T', '116 ': 'A', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAACAATCCGAT-1_contig_1
|
GGGATCACACAACAGCCACATCCCTCCCCTACAGAAGCCCCCAGAGCGCAGCACCTCACCATGGACTGCACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCTACAGGCACCCACGCCCAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGTTTCCGGATACACCCTCACTGAATTATCCATGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGAGGTTTTGATCCTGAAGATGGTGAAACAATCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCAACAGCTTACTATAGAAGGTTAGAGTGGTTATTACTACCCAACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-24*01
|
IGHD3-22*01
|
IGHJ6*02
|
CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGTTTCCGGATACACCCTCACTGAATTATCCATGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGAGGTTTTGATCCTGAAGATGGTGAAACAATCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCAACAGCTTACTATAGAAGGTTAGAGTGGTTATTACTACCCAACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGTTTCCGGATACACCCTCACTGAATTATCCATGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGAGGTTTTGATCCTGAAGATGGTGAAACAATCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCAACAGNNNNNNNNNNNNNNNNNNAGTGGTTATTACTACNNNACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLVQSGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETIYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATAYYRRLEWLLLPNYYYYGMDVWGQGTTVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETIYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATXXXXXXXWLLLXXYYYYGMDVWGQGTTVTVSS
|
1
|
295
|
314.0
|
328.0
|
332
|
390
|
CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGTTTCCGGATACACCCTCACTGAATTATCCATGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGAGGTTTTGATCCTGAAGATGGTGAAACAATCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCAACAG
|
QVQLVQSGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETIYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCAT
|
CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGTTTCCGGATACACCCTCACTGAATTATCCATGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGAGGTTTTGATCCTGAAGATGGTGAAACAATCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCAACAG
|
QVQLVQSGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETIYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCAT
|
AGTGGTTATTACTAC
|
WLLL
|
AGTGGTTATTACTAC
|
WLLL
|
ACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
ACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGTTTCC
|
QVQLVQSGAEVKKPGASVKVSCKVS
|
GGATACACCCTCACTGAATTATCC
|
GYTLTELS
|
ATGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGAGGT
|
MHWVRQAPGKGLEWMGG
|
TTTGATCCTGAAGATGGTGAAACA
|
FDPEDGET
|
ATCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
IYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCAACAGCTTACTATAGAAGGTTAGAGTGGTTATTACTACCCAACTACTACTACTACGGTATGGACGTC
|
ATAYYRRLEWLLLPNYYYYGMDV
|
TGTGCAACAGCTTACTATAGAAGGTTAGAGTGGTTATTACTACCCAACTACTACTACTACGGTATGGACGTCTGG
|
75.0
|
CATAYYRRLEWLLLPNYYYYGMDVW
|
25.0
|
461.479
|
29.528
|
114.126
|
117S295M167S1N
|
430S16N15M134S
|
448S3N59M72S
|
8.104e-132
|
0.0003352
|
2.489e-29
|
100.0
|
100.0
|
100.0
|
118
|
412
|
1
|
295
|
431.0
|
445.0
|
17.0
|
31.0
|
449
|
507
|
4
|
62
|
118
|
192
|
193
|
216
|
217
|
267
|
268
|
291
|
292
|
405
|
475.0
|
507.0
|
406.0
|
474.0
|
CTTACTATAGAAGGTTAG
|
18
|
CCA
|
3.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'L', '35 ': 'T', '36 ': 'E', '37 ': 'L', '38 ': 'S'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'G'}, 'cdrh2': {'56 ': 'F', '57 ': 'D', '58 ': 'P', '59 ': 'E', '62 ': 'D', '63 ': 'G', '64 ': 'E', '65 ': 'T'}, 'fwh3': {'66 ': 'I', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'E', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'T', '85 ': 'D', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'T', '107 ': 'A', '108 ': 'Y', '109 ': 'Y', '110 ': 'R', '111 ': 'R', '111A': 'L', '111B': 'E', '111C': 'W', '111D': 'L', '111E': 'L', '112E': 'L', '112D': 'P', '112C': 'N', '112B': 'Y', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAACAATCCGAT-1_contig_2
|
GCTCTGCTTCAGCTGTGGGCACAAGAGGCAGCACTCAGGACAATCTCCAGCATGGCCTGGTCTCCTCTCCTCCTCACTCTCCTCGCTCACTGCACAGGGTCCTGGGCCCAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV1-40*01
| null |
IGLJ3*02
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGWVFGGGTKLTVL
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGWVFGGGTKLTVL
|
1
|
298
| null | null |
299
|
334
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTT
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSG
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTT
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSG
| null | null | null | null |
GGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
GGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGC
|
QSVLTQPPSVSGAPGQRVTISCTGS
|
AGCTCCAACATCGGGGCAGGTTATGAT
|
SSNIGAGYD
|
GTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTAT
|
VHWYQQLPGTAPKLLIY
|
GGTAACAGC
|
GNS
|
AATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGC
|
NRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGTCCTATGACAGCAGCCTGAGTGGTTGGGTG
|
QSYDSSLSGWV
|
TGCCAGTCCTATGACAGCAGCCTGAGTGGTTGGGTGTTC
|
39.0
|
CQSYDSSLSGWVF
|
13.0
|
466.153
| null |
69.904
|
108S298M247S1N
| null |
406S2N36M211S
|
3.601e-133
| null |
5.771e-16
|
100.0
| null |
100.0
|
109
|
406
|
1
|
298
| null | null | null | null |
407
|
442
|
3
|
38
|
109
|
183
|
184
|
210
|
211
|
261
|
262
|
270
|
271
|
378
|
412.0
|
441.0
|
379.0
|
411.0
| null |
0
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'G', '14 ': 'A', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'T', '25 ': 'G', '26 ': 'S'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'N', '30 ': 'I', '31 ': 'G', '35 ': 'A', '36 ': 'G', '37 ': 'Y', '38 ': 'D'}, 'fwl2': {'39 ': 'V', '40 ': 'H', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'L', '46 ': 'P', '47 ': 'G', '48 ': 'T', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'G', '57 ': 'N', '65 ': 'S'}, 'fwl3': {'66 ': 'N', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'S', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'A', '91 ': 'I', '92 ': 'T', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'S', '107 ': 'Y', '108 ': 'D', '109 ': 'S', '110 ': 'S', '113 ': 'L', '114 ': 'S', '115 ': 'G', '116 ': 'W', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAACACCCTATC-1_contig_2
|
AGCTCTGAGAGAGGAGCCTTAGCCCTGGATTCCAAGGCCTATCCACTTGGTGATCAGCACTGAGCACCGAGGATTCACCATGGAACTGGGGCTCCGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGCCGCACTTAGTGGGAGCTACTCACCTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-21*01
|
IGHD1-26*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGCCGCACTTAGTGGGAGCTACTCACCTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGNNNNNNNTAGTGGGAGCTACTNNNNTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARAALSGSYSPDYWGQGTLVTVSS
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARXXXSGSYXXDYWGQGTLVTVSS
|
1
|
295
|
303.0
|
316.0
|
321
|
361
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
TAGTGGGAGCTACT
|
SGSY
|
TAGTGGGAGCTACT
|
SGSY
|
TGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
TGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVKPGGSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATAGC
|
GFTFSSYS
|
ATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCC
|
MNWVRQAPGKGLEWVSS
|
ATTAGTAGTAGTAGTAGTTACATA
|
ISSSSSYI
|
TACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGCCGCACTTAGTGGGAGCTACTCACCTGACTAC
|
ARAALSGSYSPDY
|
TGTGCGAGAGCCGCACTTAGTGGGAGCTACTCACCTGACTACTGG
|
45.0
|
CARAALSGSYSPDYW
|
15.0
|
461.479
|
27.605
|
79.518
|
136S295M137S1N
|
438S4N14M116S2N
|
456S7N41M71S
|
7.987000000000001e-132
|
0.001246
|
6.392e-19
|
100.0
|
100.0
|
100.0
|
137
|
431
|
1
|
295
|
439.0
|
452.0
|
5.0
|
18.0
|
457
|
497
|
8
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
464.0
|
496.0
|
425.0
|
463.0
|
CCGCACT
|
7
|
CACC
|
4.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'S'}, 'fwh2': {'39 ': 'M', '40 ': 'N', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'S'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'S', '59 ': 'S', '62 ': 'S', '63 ': 'S', '64 ': 'Y', '65 ': 'I'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'A', '108 ': 'A', '109 ': 'L', '110 ': 'S', '111 ': 'G', '112 ': 'S', '113 ': 'Y', '114 ': 'S', '115 ': 'P', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAACACCCTATC-1_contig_1
|
CCGATCCGCTCGTGGTGGTCTTATCTGGGGAGTCAGTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGGCTCCGAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCTCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-39*01
| null |
IGKJ1*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCTCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCNNGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTSWTFGQGTKVEIK
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTXWTFGQGTKVEIK
|
1
|
282
| null | null |
285
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYST
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYST
| null | null | null | null |
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGT
|
DIQMTQSPSSLSASVGDRVTITCRAS
|
CAGAGCATTAGCAGCTAT
|
QSISSY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LNWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAACAGAGTTACAGTACCTCGTGGACG
|
QQSYSTSWT
|
TGTCAACAGAGTTACAGTACCTCGTGGACGTTC
|
33.0
|
CQQSYSTSWTF
|
11.0
|
441.224
| null |
73.749
|
120S282M176S5N
| null |
404S38M136S
|
1.0129999999999999e-125
| null |
3.546e-17
|
100.0
| null |
100.0
|
121
|
402
|
1
|
282
| null | null | null | null |
405
|
442
|
1
|
38
|
121
|
198
|
199
|
216
|
217
|
267
|
268
|
276
|
277
|
384
|
412.0
|
441.0
|
385.0
|
411.0
|
TC
|
2
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'S', '108 ': 'Y', '109 ': 'S', '114 ': 'T', '115 ': 'S', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAACACGAAATA-1_contig_1
|
AGGTCTCAGAGAGGAGCCTTAGCCCTGGACTCCAAGGCCTTTCCACTTGGTGATCAGCACTGAGCACAGAGGACTCACCATGGAATTGGGGCTGAGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGATTTTATTCGGGACGGTTGGAGTGGTTATTATTGGAGGCCTCCGCCTGTATCCGAAGGCCGAAATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-7*01
|
IGHD3-3*01
|
IGHJ3*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGATTTTATTCGGGACGGTTGGAGTGGTTATTATTGGAGGCCTCCGCCTGTATCCGAAGGCCGAAATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGANNNNNNNNNNNNNNNTTGGAGTGGTTATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARDFIRDGWSGYYWRPPPVSEGRNAFDIWGQGTMVTVSS
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARXXXXXXWSGYYXXXXXXXXXXXAFDIWGQGTMVTVSS
|
1
|
296
|
312.0
|
327.0
|
359
|
406
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
TTGGAGTGGTTATTAT
|
WSGYY
|
TTGGAGTGGTTATTAT
|
WSGYY
|
ATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
AFDIWGQGTMVTVSS
|
ATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
AFDIWGQGTMVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTTAGTAGCTATTGG
|
GFTFSSYW
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAAC
|
MSWVRQAPGKGLEWVAN
|
ATAAAGCAAGATGGAAGTGAGAAA
|
IKQDGSEK
|
TACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGT
|
YYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
GCGAGAGATTTTATTCGGGACGGTTGGAGTGGTTATTATTGGAGGCCTCCGCCTGTATCCGAAGGCCGAAATGCTTTTGATATC
|
ARDFIRDGWSGYYWRPPPVSEGRNAFDI
|
TGTGCGAGAGATTTTATTCGGGACGGTTGGAGTGGTTATTATTGGAGGCCTCCGCCTGTATCCGAAGGCCGAAATGCTTTTGATATCTGG
|
90.0
|
CARDFIRDGWSGYYWRPPPVSEGRNAFDIW
|
30.0
|
463.037
|
31.45
|
92.976
|
136S296M181S
|
447S12N16M150S3N
|
494S2N48M71S
|
2.922e-132
|
9.371e-05
|
6.136e-23
|
100.0
|
100.0
|
100.0
|
137
|
432
|
1
|
296
|
448.0
|
463.0
|
13.0
|
28.0
|
495
|
542
|
3
|
50
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
509.0
|
541.0
|
425.0
|
508.0
|
TTTTATTCGGGACGG
|
15
|
TGGAGGCCTCCGCCTGTATCCGAAGGCCGAA
|
31.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'W'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'N'}, 'cdrh2': {'56 ': 'I', '57 ': 'K', '58 ': 'Q', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'E', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'V', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'D', '108 ': 'F', '109 ': 'I', '110 ': 'R', '111 ': 'D', '111A': 'G', '111B': 'W', '111C': 'S', '111D': 'G', '111E': 'Y', '111F': 'Y', '111G': 'W', '112H': 'R', '112G': 'P', '112F': 'P', '112E': 'P', '112D': 'V', '112C': 'S', '112B': 'E', '112A': 'G', '112 ': 'R', '113 ': 'N', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAACACGAAATA-1_contig_2
|
GATCAGGACTTCTCAGTTCATCTTCTCACCATGAGGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCTCTGGATACCTGGATCCAGTGCAGATATTGTGATGACCCAGACTCCACTCTCTCTGTCCGTCACCCCTGGACAGCCGGCCTCCATCTCCTGCAAGTCTAGTCAGAGCCTCCTGCATAGTGATGGAAAGACCTATTTGTATTGGTACCTGCAGAAGCCAGGCCAGCCTCCACAGCTCCTGATCTATGAAGTTTCCAACCGGTTCTCTGGAGTGCCAGATAGGTTCAGTGGCAGCGGGTCAGGGACAGATTTCACACTGAAAATCAGCCGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAAGTATACAGCTTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV2D-29*01
| null |
IGKJ1*01
|
GATATTGTGATGACCCAGACTCCACTCTCTCTGTCCGTCACCCCTGGACAGCCGGCCTCCATCTCCTGCAAGTCTAGTCAGAGCCTCCTGCATAGTGATGGAAAGACCTATTTGTATTGGTACCTGCAGAAGCCAGGCCAGCCTCCACAGCTCCTGATCTATGAAGTTTCCAACCGGTTCTCTGGAGTGCCAGATAGGTTCAGTGGCAGCGGGTCAGGGACAGATTTCACACTGAAAATCAGCCGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAAGTATACAGCTTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GATATTGTGATGACCCAGACTCCACTCTCTCTGTCCGTCACCCCTGGACAGCCGGCCTCCATCTCCTGCAAGTCTAGTCAGAGCCTCCTGCATAGTGATGGAAAGACCTATTTGTATTGGTACCTGCAGAAGCCAGGCCAGCCTCCACAGCTCCTGATCTATGAAGTTTCCAACCGGTTCTCTGGAGTGCCAGATAGGTTCAGTGGCAGCGGGTCAGGGACAGATTTCACACTGAAAATCAGCCGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAAGTATACAGCTTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
DIVMTQTPLSLSVTPGQPASISCKSSQSLLHSDGKTYLYWYLQKPGQPPQLLIYEVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSIQLPWTFGQGTKVEIK
|
DIVMTQTPLSLSVTPGQPASISCKSSQSLLHSDGKTYLYWYLQKPGQPPQLLIYEVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSIQLPWTFGQGTKVEIK
|
1
|
299
| null | null |
300
|
337
|
GATATTGTGATGACCCAGACTCCACTCTCTCTGTCCGTCACCCCTGGACAGCCGGCCTCCATCTCCTGCAAGTCTAGTCAGAGCCTCCTGCATAGTGATGGAAAGACCTATTTGTATTGGTACCTGCAGAAGCCAGGCCAGCCTCCACAGCTCCTGATCTATGAAGTTTCCAACCGGTTCTCTGGAGTGCCAGATAGGTTCAGTGGCAGCGGGTCAGGGACAGATTTCACACTGAAAATCAGCCGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAAGTATACAGCTTCC
|
DIVMTQTPLSLSVTPGQPASISCKSSQSLLHSDGKTYLYWYLQKPGQPPQLLIYEVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSIQLP
|
GATATTGTGATGACCCAGACTCCACTCTCTCTGTCCGTCACCCCTGGACAGCCGGCCTCCATCTCCTGCAAGTCTAGTCAGAGCCTCCTGCATAGTGATGGAAAGACCTATTTGTATTGGTACCTGCAGAAGCCAGGCCAGCCTCCACAGCTCCTGATCTATGAAGTTTCCAACCGGTTCTCTGGAGTGCCAGATAGGTTCAGTGGCAGCGGGTCAGGGACAGATTTCACACTGAAAATCAGCCGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAAGTATACAGCTTCC
|
DIVMTQTPLSLSVTPGQPASISCKSSQSLLHSDGKTYLYWYLQKPGQPPQLLIYEVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQSIQLP
| null | null | null | null |
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GATATTGTGATGACCCAGACTCCACTCTCTCTGTCCGTCACCCCTGGACAGCCGGCCTCCATCTCCTGCAAGTCTAGT
|
DIVMTQTPLSLSVTPGQPASISCKSS
|
CAGAGCCTCCTGCATAGTGATGGAAAGACCTAT
|
QSLLHSDGKTY
|
TTGTATTGGTACCTGCAGAAGCCAGGCCAGCCTCCACAGCTCCTGATCTAT
|
LYWYLQKPGQPPQLLIY
|
GAAGTTTCC
|
EVS
|
AACCGGTTCTCTGGAGTGCCAGATAGGTTCAGTGGCAGCGGGTCAGGGACAGATTTCACACTGAAAATCAGCCGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGC
|
NRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
ATGCAAAGTATACAGCTTCCGTGGACG
|
MQSIQLPWT
|
TGCATGCAAAGTATACAGCTTCCGTGGACGTTC
|
33.0
|
CMQSIQLPWTF
|
11.0
|
467.712
| null |
73.749
|
90S299M174S3N
| null |
389S38M136S
|
1.052e-133
| null |
3.452e-17
|
100.0
| null |
100.0
|
91
|
389
|
1
|
299
| null | null | null | null |
390
|
427
|
1
|
38
|
91
|
168
|
169
|
201
|
202
|
252
|
253
|
261
|
262
|
369
|
397.0
|
426.0
|
370.0
|
396.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'T', '8 ': 'P', '9 ': 'L', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'V', '14 ': 'T', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'P', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'S', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'L', '30 ': 'L', '31 ': 'H', '32 ': 'S', '34 ': 'D', '35 ': 'G', '36 ': 'K', '37 ': 'T', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'Y', '41 ': 'W', '42 ': 'Y', '43 ': 'L', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'P', '50 ': 'P', '51 ': 'Q', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'E', '57 ': 'V', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'F', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'K', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'V', '95 ': 'E', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'V', '100 ': 'G', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'M', '106 ': 'Q', '107 ': 'S', '108 ': 'I', '109 ': 'Q', '114 ': 'L', '115 ': 'P', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAACACGCTTTC-1_contig_1
|
AGGTCTCAGAGAGGAGCCTTAGCCCTGGACTCCAAGGCCTTTCCACTTGGTGATCAGCACTGAGCACAGAGGACTCACCATGGAATTGGGGCTGAGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGTGAAAAGTATTACTATGATAGTAGTGGTTATTATTCTCATTTGGAACCGTCACCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-7*01
|
IGHD3-22*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGTGAAAAGTATTACTATGATAGTAGTGGTTATTATTCTCATTTGGAACCGTCACCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGANNNGTATTACTATGATAGTAGTGGTTATTANNNNNNNNNNNNNNNNNNNNNCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCASEKYYYDSSGYYSHLEPSPFDYWGQGTLVTVSS
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARXXYYYDSSGYXXXXXXXXFDYWGQGTLVTVSS
|
1
|
296
|
300.0
|
326.0
|
348
|
391
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGTGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWMSWVRQAPGKGLEWVANIKQDGSEKYYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
GTATTACTATGATAGTAGTGGTTATTA
|
YYYDSSGY
|
GTATTACTATGATAGTAGTGGTTATTA
|
YYYDSSGY
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTTAGTAGCTATTGG
|
GFTFSSYW
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAAC
|
MSWVRQAPGKGLEWVAN
|
ATAAAGCAAGATGGAAGTGAGAAA
|
IKQDGSEK
|
TACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGT
|
YYVDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGTGAAAAGTATTACTATGATAGTAGTGGTTATTATTCTCATTTGGAACCGTCACCCTTTGACTAC
|
ASEKYYYDSSGYYSHLEPSPFDY
|
TGTGCGAGTGAAAAGTATTACTATGATAGTAGTGGTTATTATTCTCATTTGGAACCGTCACCCTTTGACTACTGG
|
75.0
|
CASEKYYYDSSGYYSHLEPSPFDYW
|
25.0
|
459.921
|
52.6
|
85.286
|
136S296M166S
|
435S27M136S4N
|
483S4N44M71S
|
2.4690000000000004e-131
|
3.928e-11
|
1.2360000000000001e-20
|
99.662
|
100.0
|
100.0
|
137
|
432
|
1
|
296
|
436.0
|
462.0
|
1.0
|
27.0
|
484
|
527
|
5
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
494.0
|
526.0
|
425.0
|
493.0
|
AAA
|
3
|
TTCTCATTTGGAACCGTCACC
|
21.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'W'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'N'}, 'cdrh2': {'56 ': 'I', '57 ': 'K', '58 ': 'Q', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'E', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'V', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'S', '107 ': 'E', '108 ': 'K', '109 ': 'Y', '110 ': 'Y', '111 ': 'Y', '111A': 'D', '111B': 'S', '111C': 'S', '111D': 'G', '111E': 'Y', '112E': 'Y', '112D': 'S', '112C': 'H', '112B': 'L', '112A': 'E', '112 ': 'P', '113 ': 'S', '114 ': 'P', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAACACGCTTTC-1_contig_2
|
GAGCTACAACAGGCAGGCAGGGGCAGCAAGATGGTGTTGCAGACCCAGGTCTTCATTTCTCTGTTGCTCTGGATCTCTGGTGCCTACGGGGACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCTGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV4-1*01
| null |
IGKJ1*01
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCTGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCNGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPLTFGQGTKVEIK
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPXTFGQGTKVEIK
|
1
|
304
| null | null |
306
|
340
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTP
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTC
|
DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTP
| null | null | null | null |
GACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
GACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGC
|
DIVMTQSPDSLAVSLGERATINCKSS
|
CAGAGTGTTTTATACAGCTCCAACAATAAGAACTAC
|
QSVLYSSNNKNY
|
TTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTAC
|
LAWYQQKPGQPPKLLIY
|
TGGGCATCT
|
WAS
|
ACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGT
|
TRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAGCAATATTATAGTACTCCTCTGACG
|
QQYYSTPLT
|
TGTCAGCAATATTATAGTACTCCTCTGACGTTC
|
33.0
|
CQQYYSTPLTF
|
11.0
|
475.502
| null |
67.981
|
90S304M172S1N
| null |
395S3N35M136S
|
4.78e-136
| null |
1.891e-15
|
100.0
| null |
100.0
|
91
|
394
|
1
|
304
| null | null | null | null |
396
|
430
|
4
|
38
|
91
|
168
|
169
|
204
|
205
|
255
|
256
|
264
|
265
|
372
|
400.0
|
429.0
|
373.0
|
399.0
|
T
|
1
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'D', '10 ': 'S', '11 ': 'L', '12 ': 'A', '13 ': 'V', '14 ': 'S', '15 ': 'L', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'I', '22 ': 'N', '23 ': 'C', '24 ': 'K', '25 ': 'S', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '30 ': 'L', '31 ': 'Y', '32 ': 'S', '33 ': 'S', '34 ': 'N', '35 ': 'N', '36 ': 'K', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'P', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'W', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'R', '68 ': 'E', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'V', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'Y', '109 ': 'S', '114 ': 'T', '115 ': 'P', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAACAGACAAGC-1_contig_1
|
GAGAGCATCACCCAGCAACCACATCTGTCCTCTAGAGAATCCCCTGAGAGCTCCGTTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCCACAGGAGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGGCTGTTACTATGATAGTAGTGGTTATTACCCAACCTGCCCGCTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-2*06
|
IGHD3-22*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGGCTGTTACTATGATAGTAGTGGTTATTACCCAACCTGCCCGCTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGNNNNTTACTATGATAGTAGTGGTTATTACNNNNNNNNNNNNNTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARGCYYDSSGYYPTCPLDYWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARXXYYDSSGYYXXXXXDYWGQGTLVTVSS
|
1
|
295
|
300.0
|
324.0
|
338
|
379
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
TTACTATGATAGTAGTGGTTATTAC
|
YYDSSGYY
|
TTACTATGATAGTAGTGGTTATTAC
|
YYDSSGYY
|
TTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
TTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCGGCTACTAT
|
GYTFTGYY
|
ATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGG
|
MHWVRQAPGQGLEWMGR
|
ATCAACCCTAACAGTGGTGGCACA
|
INPNSGGT
|
AACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGGCTGTTACTATGATAGTAGTGGTTATTACCCAACCTGCCCGCTTGACTAC
|
ARGCYYDSSGYYPTCPLDY
|
TGTGCGAGAGGCTGTTACTATGATAGTAGTGGTTATTACCCAACCTGCCCGCTTGACTACTGG
|
63.0
|
CARGCYYDSSGYYPTCPLDYW
|
21.0
|
461.479
|
48.755
|
81.44
|
121S295M155S1N
|
420S3N25M126S3N
|
458S6N42M71S
|
8.032e-132
|
5.387e-10
|
1.695e-19
|
100.0
|
100.0
|
100.0
|
122
|
416
|
1
|
295
|
421.0
|
445.0
|
4.0
|
28.0
|
459
|
500
|
7
|
48
|
122
|
196
|
197
|
220
|
221
|
271
|
272
|
295
|
296
|
409
|
467.0
|
499.0
|
410.0
|
466.0
|
GCTG
|
4
|
CCAACCTGCCCGC
|
13.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'G', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'G', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'R', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'D', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'C', '109 ': 'Y', '110 ': 'Y', '111 ': 'D', '111A': 'S', '111B': 'S', '111C': 'G', '112C': 'Y', '112B': 'Y', '112A': 'P', '112 ': 'T', '113 ': 'C', '114 ': 'P', '115 ': 'L', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAACAGACAAGC-1_contig_2
|
CTGGGCCTCAGGAAGCAGCATCGGAGGTGCCTCAGCCATGGCATGGATCCCTCTCTTCCTCGGCGTCCTTGCTTACTGCACAGGTTCCGTGGCCTCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-1*01
| null |
IGLJ2*01
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTVVFGGGTKLTVL
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTVVFGGGTKLTVL
|
1
|
283
| null | null |
284
|
319
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTG
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSST
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTG
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSST
| null | null | null | null |
TGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
TGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGAT
|
SYELTQPPSVSVSPGQTASITCSGD
|
AAATTGGGGGATAAATAT
|
KLGDKY
|
GCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTAT
|
ACWYQQKPGQSPVLVIY
|
CAAGATAGC
|
QDS
|
AAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGT
|
KRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGGCGTGGGACAGCAGCACTGTGGTA
|
QAWDSSTVV
|
TGTCAGGCGTGGGACAGCAGCACTGTGGTATTC
|
33.0
|
CQAWDSSTVVF
|
11.0
|
442.782
| null |
69.904
|
94S283M247S2N
| null |
377S2N36M211S
|
3.727e-126
| null |
5.51e-16
|
100.0
| null |
100.0
|
95
|
377
|
1
|
283
| null | null | null | null |
378
|
413
|
3
|
38
|
95
|
169
|
170
|
187
|
188
|
238
|
239
|
247
|
248
|
355
|
383.0
|
412.0
|
356.0
|
382.0
| null |
0
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'E', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'D'}, 'cdrl1': {'27 ': 'K', '28 ': 'L', '29 ': 'G', '36 ': 'D', '37 ': 'K', '38 ': 'Y'}, 'fwl2': {'39 ': 'A', '40 ': 'C', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'S', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'Q', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'N', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'T', '95 ': 'Q', '96 ': 'A', '97 ': 'M', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'A', '107 ': 'W', '108 ': 'D', '109 ': 'S', '114 ': 'S', '115 ': 'T', '116 ': 'V', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAACAGTTCCCT-1_contig_2
|
CGAGCCCAGCACTGGAAGTCGCCGGTGTTTCCATTCGGTGATCATCACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTCCTCGTTGCTCTTTTAAGAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGGGGTATAGTGGCTACGATTTTTAAGGCGGGGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-30-3*01
|
IGHD5-12*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGGGGTATAGTGGCTACGATTTTTAAGGCGGGGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGNNNTATAGTGGCTACGATTNNNNNNNNNNNNGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGIVATIFKAGDYWGQGTLVTVSS
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAXXIVATIXXXXDYWGQGTLVTVSS
|
1
|
293
|
297.0
|
312.0
|
325
|
364
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCA
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGCAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAG
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCA
|
TATAGTGGCTACGATT
|
IVATI
|
TATAGTGGCTACGATT
|
IVATI
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
QVQLVESGGGVVQPGRSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATGCT
|
GFTFSSYA
|
ATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTT
|
MHWVRQAPGKGLEWVAV
|
ATATCATATGATGGAAGCAATAAA
|
ISYDGSNK
|
TACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGGGGTATAGTGGCTACGATTTTTAAGGCGGGGGACTAC
|
ARGIVATIFKAGDY
|
TGTGCGAGGGGTATAGTGGCTACGATTTTTAAGGCGGGGGACTACTGG
|
48.0
|
CARGIVATIFKAGDYW
|
16.0
|
458.363
|
31.45
|
77.595
|
124S293M142S3N
|
420S5N16M123S2N
|
448S8N40M71S
|
6.810000000000005e-131
|
8.532e-05
|
2.384e-18
|
100.0
|
100.0
|
100.0
|
125
|
417
|
1
|
293
|
421.0
|
436.0
|
6.0
|
21.0
|
449
|
488
|
9
|
48
|
125
|
199
|
200
|
223
|
224
|
274
|
275
|
298
|
299
|
412
|
455.0
|
487.0
|
413.0
|
454.0
|
GGG
|
3
|
TTTAAGGCGGGG
|
12.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'V', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'Y', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'N', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'I', '109 ': 'V', '110 ': 'A', '111 ': 'T', '112A': 'I', '112 ': 'F', '113 ': 'K', '114 ': 'A', '115 ': 'G', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAACAGTTCCCT-1_contig_1
|
GGGGAGGAGTCAGTCCCAACCAGGACACAGCATGGACATGAGGGTCCCTGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCTCAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-33*01
| null |
IGKJ4*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPLTFGGGTKVEIK
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPLTFGGGTKVEIK
|
1
|
286
| null | null |
287
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLP
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLP
| null | null | null | null |
TCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
TFGGGTKVEIK
|
TCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
TFGGGTKVEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGT
|
DIQMTQSPSSLSASVGDRVTITCQAS
|
CAGGACATTAGCAACTAT
|
QDISNY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAC
|
LNWYQQKPGKAPKLLIY
|
GATGCATCC
|
DAS
|
AATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGT
|
NLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAACAGTATGATAATCTCCCTCTCACT
|
QQYDNLPLT
|
TGTCAACAGTATGATAATCTCCCTCTCACTTTC
|
33.0
|
CQQYDNLPLTF
|
11.0
|
447.456
| null |
69.904
|
97S286M172S1N
| null |
383S2N36M136S
|
1.2979999999999998e-127
| null |
4.89e-16
|
100.0
| null |
100.0
|
98
|
383
|
1
|
286
| null | null | null | null |
384
|
419
|
3
|
38
|
98
|
175
|
176
|
193
|
194
|
244
|
245
|
253
|
254
|
361
|
389.0
|
418.0
|
362.0
|
388.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'Q', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'D', '29 ': 'I', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'L', '68 ': 'E', '69 ': 'T', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'F', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'I', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'D', '109 ': 'N', '114 ': 'L', '115 ': 'P', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAACATCCTTGC-1_contig_2
|
TTTTCTAATCTGGGGAGCTCTGGGAGAGGAGCCCCAGCCCTGAGATTCCCAGGTGTTTCCATTCAGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTGGGACTGAGCTGGATTTTCCTTTTGGCTATTTTAAAAGGTGTCCAGTGTGAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAATTAACGTTCCACCGGCCTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-9*01
|
IGHD3-16*01
|
IGHJ3*02
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAATTAACGTTCCACCGGCCTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAANNNACGTTNNNNNNNNNTGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKLTFHRPDAFDIWGQGTMVTVSS
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKXTXXXXDAFDIWGQGTMVTVSS
|
1
|
294
|
298.0
|
302.0
|
312
|
361
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAA
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAK
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAA
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAK
|
ACGTT
|
T
|
ACGTT
|
T
|
TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
DAFDIWGQGTMVTVSS
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGRSLRLSCAAS
|
GGATTCACCTTTGATGATTATGCC
|
GFTFDDYA
|
ATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGT
|
MHWVRQAPGKGLEWVSG
|
ATTAGTTGGAATAGTGGTAGCATA
|
ISWNSGSI
|
GGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGT
|
GYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
GCAAAATTAACGTTCCACCGGCCTGATGCTTTTGATATC
|
AKLTFHRPDAFDI
|
TGTGCAAAATTAACGTTCCACCGGCCTGATGCTTTTGATATCTGG
|
45.0
|
CAKLTFHRPDAFDIW
|
15.0
|
459.921
|
10.301
|
96.822
|
152S294M138S4N
|
449S11N5M130S21N
|
463S50M71S
|
2.408e-131
|
207.5
|
4.063e-24
|
100.0
|
100.0
|
100.0
|
153
|
446
|
1
|
294
|
450.0
|
454.0
|
12.0
|
16.0
|
464
|
513
|
1
|
50
|
153
|
227
|
228
|
251
|
252
|
302
|
303
|
326
|
327
|
440
|
480.0
|
512.0
|
441.0
|
479.0
|
TTA
|
3
|
CCACCGGCC
|
9.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'D', '36 ': 'D', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'G'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'W', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'I'}, 'fwh3': {'66 ': 'G', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'L', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'L', '108 ': 'T', '109 ': 'F', '110 ': 'H', '111 ': 'R', '112 ': 'P', '113 ': 'D', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAACATCCTTGC-1_contig_1
|
GGGAGTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGGCTCCGAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-39*01
| null |
IGKJ3*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPFTFGPGTKVDIK
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPFTFGPGTKVDIK
|
1
|
285
| null | null |
286
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCT
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTP
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCT
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTP
| null | null | null | null |
TTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
FTFGPGTKVDIK
|
TTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC
|
FTFGPGTKVDIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGT
|
DIQMTQSPSSLSASVGDRVTITCRAS
|
CAGAGCATTAGCAGCTAT
|
QSISSY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LNWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTCGGCCCTGGGACCAAAGTGGATATCAAA
|
FGPGTKVDIK
|
CAACAGAGTTACAGTACCCCTTTCACT
|
QQSYSTPFT
|
TGTCAACAGAGTTACAGTACCCCTTTCACTTTC
|
33.0
|
CQQSYSTPFTF
|
11.0
|
445.898
| null |
71.827
|
89S285M173S2N
| null |
374S1N37M136S
|
3.763e-127
| null |
1.271e-16
|
100.0
| null |
100.0
|
90
|
374
|
1
|
285
| null | null | null | null |
375
|
411
|
2
|
38
|
90
|
167
|
168
|
185
|
186
|
236
|
237
|
245
|
246
|
353
|
381.0
|
410.0
|
354.0
|
380.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'S', '108 ': 'Y', '109 ': 'S', '114 ': 'T', '115 ': 'P', '116 ': 'F', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'P', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'D', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAAGTAAATGTG-1_contig_1
|
AGCTCTGGGAGAGGAGCCCCAGCCCTGAGATTCCCAGGTGTTTCCATTCGGTGATCAGCACTGAACACAGAGAACTCACCATGGAGTTTGGACTGAGCTGGGTTTTCCTTGTTGCTATTTTAAAAGGTGTCCAGTGTGAAGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGTCAAGCTCCAGGGAAGGGTCTGGAGTGGGTCTCTCTTATTAGTGGGGATGGTGGTAGCACATACTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACAGCAAAAACTCCCTGTATCTGCAAATGAACAGTCTGAGAACTGAGGACACCGCCTTGTATTACTGTGCAAACTCCCTAGAGATGGCTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-43*02
|
IGHD5-12*01
|
IGHJ4*02
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGTCAAGCTCCAGGGAAGGGTCTGGAGTGGGTCTCTCTTATTAGTGGGGATGGTGGTAGCACATACTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACAGCAAAAACTCCCTGTATCTGCAAATGAACAGTCTGAGAACTGAGGACACCGCCTTGTATTACTGTGCAAACTCCCTAGAGATGGCTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGTCAAGCTCCAGGGAAGGGTCTGGAGTGGGTCTCTCTTATTAGTGGGGATGGTGGTAGCACATACTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACAGCAAAAACTCCCTGTATCTGCAAATGAACAGTCTGAGAACTGAGGACACCGCCTTGTATTACTGTGCAAANNNNNNNNNNNTGGCTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGVVQPGGSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSLISGDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRTEDTALYYCANSLEMAFDYWGQGTLVTVSS
|
EVQLVESGGGVVQPGGSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSLISGDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRTEDTALYYCAXXXXXAFDYWGQGTLVTVSS
|
1
|
293
|
305.0
|
309.0
|
310
|
352
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGTCAAGCTCCAGGGAAGGGTCTGGAGTGGGTCTCTCTTATTAGTGGGGATGGTGGTAGCACATACTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACAGCAAAAACTCCCTGTATCTGCAAATGAACAGTCTGAGAACTGAGGACACCGCCTTGTATTACTGTGCAAA
|
EVQLVESGGGVVQPGGSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSLISGDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRTEDTALYYCA
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGTCAAGCTCCAGGGAAGGGTCTGGAGTGGGTCTCTCTTATTAGTGGGGATGGTGGTAGCACATACTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACAGCAAAAACTCCCTGTATCTGCAAATGAACAGTCTGAGAACTGAGGACACCGCCTTGTATTACTGTGCAAA
|
EVQLVESGGGVVQPGGSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSLISGDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRTEDTALYYCA
|
TGGCT
|
A
|
TGGCT
|
A
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGVVQPGGSLRLSCAAS
|
GGATTCACCTTTGATGATTATGCC
|
GFTFDDYA
|
ATGCACTGGGTCCGTCAAGCTCCAGGGAAGGGTCTGGAGTGGGTCTCTCTT
|
MHWVRQAPGKGLEWVSL
|
ATTAGTGGGGATGGTGGTAGCACA
|
ISGDGGST
|
TACTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACAGCAAAAACTCCCTGTATCTGCAAATGAACAGTCTGAGAACTGAGGACACCGCCTTGTATTACTGT
|
YYADSVKGRFTISRDNSKNSLYLQMNSLRTEDTALYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCAAACTCCCTAGAGATGGCTTTTGACTAC
|
ANSLEMAFDY
|
TGTGCAAACTCCCTAGAGATGGCTTTTGACTACTGG
|
36.0
|
CANSLEMAFDYW
|
12.0
|
458.363
|
10.301
|
83.363
|
137S293M130S5N
|
441S10N5M114S8N
|
446S5N43M71S
|
6.823e-131
|
198.8
|
4.383e-20
|
100.0
|
100.0
|
100.0
|
138
|
430
|
1
|
293
|
442.0
|
446.0
|
11.0
|
15.0
|
447
|
489
|
6
|
48
|
138
|
212
|
213
|
236
|
237
|
287
|
288
|
311
|
312
|
425
|
456.0
|
488.0
|
426.0
|
455.0
|
CTCCCTAGAGA
|
11
| null |
0.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'V', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'D', '36 ': 'D', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'L'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'G', '59 ': 'D', '62 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'T', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'L', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'N', '107 ': 'S', '108 ': 'L', '109 ': 'E', '113 ': 'M', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAAGTAAATGTG-1_contig_2
|
GCTGGGGTCTCAGGAGGCAGCGCTCTCAGGACGTCACCACCATGGCCTGGGCTCTGCTCCTCCTCAGCCTCCTCACTCAGGGCACAGGGTCCTGGGCCCAGTCTGCCCTGACTCAGCCTCCCTCCGCGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCGTCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCAGCTCATATGCAGGCAGCAACATCTCTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV2-8*01
| null |
IGLJ3*02
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGCGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCGTCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCAGCTCATATGCAGGCAGCAACATCTCTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGCGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCGTCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCAGCTCATATGCAGGCAGCAACANNNNTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYAGSNISWVFGGGTKLTVL
|
QSALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYAGSNXXWVFGGGTKLTVL
|
1
|
292
| null | null |
297
|
334
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGCGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCGTCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCAGCTCATATGCAGGCAGCAACA
|
QSALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYAGSN
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGCGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCGTCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCAGCTCATATGCAGGCAGCAACA
|
QSALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYAGSN
| null | null | null | null |
TTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
TTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
WVFGGGTKLTVL
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGCGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACC
|
QSALTQPPSASGSPGQSVTISCTGT
|
AGCAGTGACGTTGGTGGTTATAACTAT
|
SSDVGGYNY
|
GTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTAT
|
VSWYQQHPGKAPKLMIY
|
GAGGTCAGT
|
EVS
|
AAGCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCGTCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGC
|
KRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
AGCTCATATGCAGGCAGCAACATCTCTTGGGTG
|
SSYAGSNISWV
|
TGCAGCTCATATGCAGGCAGCAACATCTCTTGGGTGTTC
|
39.0
|
CSSYAGSNISWVF
|
13.0
|
456.805
| null |
73.749
|
98S292M253S5N
| null |
394S38M211S
|
2.31e-130
| null |
3.952e-17
|
100.0
| null |
100.0
|
99
|
390
|
1
|
292
| null | null | null | null |
395
|
432
|
1
|
38
|
99
|
173
|
174
|
200
|
201
|
251
|
252
|
260
|
261
|
368
|
402.0
|
431.0
|
369.0
|
401.0
|
TCTC
|
4
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'A', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'A', '12 ': 'S', '13 ': 'G', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'S', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'T', '25 ': 'G', '26 ': 'T'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'D', '30 ': 'V', '31 ': 'G', '35 ': 'G', '36 ': 'Y', '37 ': 'N', '38 ': 'Y'}, 'fwl2': {'39 ': 'V', '40 ': 'S', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'H', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'M', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'E', '57 ': 'V', '65 ': 'S'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'T', '91 ': 'V', '92 ': 'S', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'S', '106 ': 'S', '107 ': 'Y', '108 ': 'A', '109 ': 'G', '110 ': 'S', '113 ': 'N', '114 ': 'I', '115 ': 'S', '116 ': 'W', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAAGTATAATGG-1_contig_1
|
AGCTCTGAGAGAGGAGCCCAGCCCTGGGATTTTCAGGTGTTTTCATTTGGTGATCAGGACTGAACAGAGAGAACTCACCATGGAGTTTGGGCTGAGCTGGCTTTTTCTTGTGGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGATACCGCATACTATGATAGTAGTGGTTATTACGATTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-23*01
|
IGHD3-22*01
|
IGHJ4*02
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGATACCGCATACTATGATAGTAGTGGTTATTACGATTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGANNNNNNNTACTATGATAGTAGTGGTTATTACNNNTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDTAYYDSSGYYDYWGQGTLVTVSS
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKXXXYYDSSGYYXYWGQGTLVTVSS
|
1
|
296
|
304.0
|
327.0
|
331
|
367
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA
|
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
TACTATGATAGTAGTGGTTATTAC
|
YYDSSGYY
|
TACTATGATAGTAGTGGTTATTAC
|
YYDSSGYY
|
TACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YWGQGTLVTVSS
|
TACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
YWGQGTLVTVSS
|
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLLESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTTAGCAGCTATGCC
|
GFTFSSYA
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCT
|
MSWVRQAPGKGLEWVSA
|
ATTAGTGGTAGTGGTGGTAGCACA
|
ISGSGGST
|
TACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAAAGATACCGCATACTATGATAGTAGTGGTTATTACGATTAC
|
AKDTAYYDSSGYYDY
|
TGTGCGAAAGATACCGCATACTATGATAGTAGTGGTTATTACGATTACTGG
|
51.0
|
CAKDTAYYDSSGYYDYW
|
17.0
|
463.037
|
46.832
|
71.827
|
136S296M142S
|
439S4N24M111S3N
|
466S11N37M71S
|
2.727e-132
|
2.053e-09
|
1.335e-16
|
100.0
|
100.0
|
100.0
|
137
|
432
|
1
|
296
|
440.0
|
463.0
|
5.0
|
28.0
|
467
|
503
|
12
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
470.0
|
502.0
|
425.0
|
469.0
|
TACCGCA
|
7
|
GAT
|
3.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'L', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'A'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'G', '59 ': 'S', '62 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'D', '108 ': 'T', '109 ': 'A', '110 ': 'Y', '111 ': 'Y', '111A': 'D', '112A': 'S', '112 ': 'S', '113 ': 'G', '114 ': 'Y', '115 ': 'Y', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAAGTATAATGG-1_contig_2
|
AGTCAGTCCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCCCAGGTGCCAGATGTGACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTCAACTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-9*01
| null |
IGKJ4*01
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTCAACTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTCNNCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSYPQLTFGGGTKVEIK
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSYPXLTFGGGTKVEIK
|
1
|
286
| null | null |
289
|
325
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTC
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSYP
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTC
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSYP
| null | null | null | null |
CTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
CTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGT
|
DIQLTQSPSFLSASVGDRVTITCRAS
|
CAGGGCATTAGCAGTTAT
|
QGISSY
|
TTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LAWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
ACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGT
|
TLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAACAGCTTAATAGTTACCCTCAACTCACT
|
QQLNSYPQLT
|
TGTCAACAGCTTAATAGTTACCCTCAACTCACTTTC
|
36.0
|
CQQLNSYPQLTF
|
12.0
|
447.456
| null |
71.827
|
90S286M175S1N
| null |
378S1N37M136S
|
1.288e-127
| null |
1.28e-16
|
100.0
| null |
100.0
|
91
|
376
|
1
|
286
| null | null | null | null |
379
|
415
|
2
|
38
|
91
|
168
|
169
|
186
|
187
|
237
|
238
|
246
|
247
|
354
|
385.0
|
414.0
|
355.0
|
384.0
|
AA
|
2
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'F', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'G', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'L', '108 ': 'N', '109 ': 'S', '113 ': 'Y', '114 ': 'P', '115 ': 'Q', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAAGTCCAGTAT-1_contig_1
|
AAAGCAAGTCCAGTATTCAGCGCAACTCTTATATGGGGAGCTCTGGGAGAGGAGCCCCAGCCCTGAGATTCCCAGGTGTTTCCATTCAGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTGGGACTGAGCTGGATTTTCCTTTTGGCTATTTTAAAAGGTGTCCAGTGTGAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATGTCACGGATCGGGGTTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-9*01
|
IGHD3-10*01
|
IGHJ6*02
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATGTCACGGATCGGGGTTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATNNNNNNNNTCGGGGNTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKDVTDRGYYYYGMDVWGQGTTVTVSS
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKDXXXRGYYYYGMDVWGQGTTVTVSS
|
1
|
297
|
306.0
|
311.0
|
313
|
369
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGAT
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKD
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGAT
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKD
|
TCGGGG
|
RG
|
TCGGGG
|
RG
|
TACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
TACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGRSLRLSCAAS
|
GGATTCACCTTTGATGATTATGCC
|
GFTFDDYA
|
ATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGT
|
MHWVRQAPGKGLEWVSG
|
ATTAGTTGGAATAGTGGTAGCATA
|
ISWNSGSI
|
GGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGT
|
GYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCAAAAGATGTCACGGATCGGGGTTACTACTACTACGGTATGGACGTC
|
AKDVTDRGYYYYGMDV
|
TGTGCAAAAGATGTCACGGATCGGGGTTACTACTACTACGGTATGGACGTCTGG
|
54.0
|
CAKDVTDRGYYYYGMDVW
|
18.0
|
464.595
|
12.223
|
110.281
|
175S297M144S1N
|
480S13N6M130S12N
|
487S5N57M72S
|
9.975e-133
|
57.78
|
3.81e-28
|
100.0
|
100.0
|
100.0
|
176
|
472
|
1
|
297
|
481.0
|
486.0
|
14.0
|
19.0
|
488
|
544
|
6
|
62
|
176
|
250
|
251
|
274
|
275
|
325
|
326
|
349
|
350
|
463
|
512.0
|
544.0
|
464.0
|
511.0
|
GTCACGGA
|
8
|
T
|
1.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'D', '36 ': 'D', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'G'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'W', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'I'}, 'fwh3': {'66 ': 'G', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'L', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'D', '108 ': 'V', '109 ': 'T', '110 ': 'D', '111 ': 'R', '111A': 'G', '112B': 'Y', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAAGTCCAGTAT-1_contig_2
|
CTGGGCCTCAGGAAGCAGCATCGGAGGTGCCTCAGCCATGGCATGGATCCCTCTCTTCCTCGGCGTCCTTGCTTACTGCACAGGATCCGTGGCCTCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGGAGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAGGTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-1*01
| null |
IGLJ1*01
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGGAGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGNNGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTGVFGTGTKVTVL
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSSTXVFGTGTKVTVL
|
1
|
283
| null | null |
286
|
319
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTG
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSST
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTG
|
SYELTQPPSVSVSPGQTASITCSGDKLGDKYACWYQQKPGQSPVLVIYQDSKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSST
| null | null | null | null |
GTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
VFGTGTKVTVL
|
GTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
VFGTGTKVTVL
|
TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGAT
|
SYELTQPPSVSVSPGQTASITCSGD
|
AAATTGGGGGATAAATAT
|
KLGDKY
|
GCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTAT
|
ACWYQQKPGQSPVLVIY
|
CAAGATAGC
|
QDS
|
AAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGT
|
KRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYC
|
TTCGGAACTGGGACCAAGGTCACCGTCCTA
|
FGTGTKVTVL
|
CAGGCGTGGGACAGCAGCACTGGAGTC
|
QAWDSSTGV
|
TGTCAGGCGTGGGACAGCAGCACTGGAGTCTTC
|
33.0
|
CQAWDSSTGVF
|
11.0
|
442.782
| null |
66.059
|
94S283M247S2N
| null |
379S4N34M211S
|
3.727e-126
| null |
7.92e-15
|
100.0
| null |
100.0
|
95
|
377
|
1
|
283
| null | null | null | null |
380
|
413
|
5
|
38
|
95
|
169
|
170
|
187
|
188
|
238
|
239
|
247
|
248
|
355
|
383.0
|
412.0
|
356.0
|
382.0
|
GA
|
2
| null | null |
GTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'E', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'D'}, 'cdrl1': {'27 ': 'K', '28 ': 'L', '29 ': 'G', '36 ': 'D', '37 ': 'K', '38 ': 'Y'}, 'fwl2': {'39 ': 'A', '40 ': 'C', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'S', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'Q', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'N', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'T', '95 ': 'Q', '96 ': 'A', '97 ': 'M', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'A', '107 ': 'W', '108 ': 'D', '109 ': 'S', '114 ': 'S', '115 ': 'T', '116 ': 'G', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'T', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAAGTCCCTACT-1_contig_1
|
AGCTCTGGGAGAGGAGCCCCAGCCTTGGGATTCCCAAGTGTTTTCATTCAGTGATCAGGACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGATTTTCCTTGCTGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGATAGTCTCCCTCCTGCGGGGTGGGGCTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-15*01
|
IGHD1-26*01
|
IGHJ5*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGATAGTCTCCCTCCTGCGGGGTGGGGCTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGANNNNNNNNNNNNNNNNNNGTGGGNCTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTDSLPPAGWGWFDPWGQGTLVTVSS
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTTXXXXXXXWXWFDPWGQGTLVTVSS
|
1
|
302
|
321.0
|
325.0
|
327
|
373
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTT
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSNAWMSWVRQAPGKGLEWVGRIKSKTDGGTTDYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTT
|
GTGGG
|
W
|
GTGGG
|
W
|
CTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WFDPWGQGTLVTVSS
|
CTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WFDPWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVKPGGSLRLSCAAS
|
GGATTCACTTTCAGTAACGCCTGG
|
GFTFSNAW
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGT
|
MSWVRQAPGKGLEWVGR
|
ATTAAAAGCAAAACTGATGGTGGGACAACA
|
IKSKTDGGTT
|
GACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGT
|
DYAAPVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
ACCACAGATAGTCTCCCTCCTGCGGGGTGGGGCTGGTTCGACCCC
|
TTDSLPPAGWGWFDP
|
TGTACCACAGATAGTCTCCCTCCTGCGGGGTGGGGCTGGTTCGACCCCTGG
|
51.0
|
CTTDSLPPAGWGWFDPW
|
17.0
|
472.386
|
10.301
|
91.054
|
137S302M142S
|
457S6N5M119S9N
|
463S4N47M71S
|
4.2369999999999997e-135
|
206.4
|
2.203e-22
|
100.0
|
100.0
|
100.0
|
138
|
439
|
1
|
302
|
458.0
|
462.0
|
7.0
|
11.0
|
464
|
510
|
5
|
51
|
138
|
212
|
213
|
236
|
237
|
287
|
288
|
317
|
318
|
431
|
477.0
|
509.0
|
432.0
|
476.0
|
TAGTCTCCCTCCTGCGGG
|
18
|
G
|
1.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'N', '37 ': 'A', '38 ': 'W'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'K', '58 ': 'S', '59 ': 'K', '60 ': 'T', '61 ': 'D', '62 ': 'G', '63 ': 'G', '64 ': 'T', '65 ': 'T'}, 'fwh3': {'66 ': 'D', '67 ': 'Y', '68 ': 'A', '69 ': 'A', '70 ': 'P', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'D', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'K', '96 ': 'T', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'T', '106 ': 'T', '107 ': 'D', '108 ': 'S', '109 ': 'L', '110 ': 'P', '111 ': 'P', '111A': 'A', '112A': 'G', '112 ': 'W', '113 ': 'G', '114 ': 'W', '115 ': 'F', '116 ': 'D', '117 ': 'P'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAAGTCCCTACT-1_contig_2
|
GGGGTCACAAGAGGCAGCGCTCTCGGGACGTCTCCACCATGGCCTGGGCTCTGCTGCTCCTCACTCTCCTCACTCAGGACACAGGGTCCTGGGCCCAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGGCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTAGCACTTTCGGGTATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV2-23*03
| null |
IGLJ2*01
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGGCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTAGCACTTTCGGGTATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGGCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTAGCACTTTCNNNNNTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSALTQPASVSGSPGQSITISCTGTSSDVGSYNLVSWYQQHPGKAPKLMIYEGSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCCSYAGSSTFGYVVFGGGTKLTVL
|
QSALTQPASVSGSPGQSITISCTGTSSDVGSYNLVSWYQQHPGKAPKLMIYEGSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCCSYAGSSTFXXVVFGGGTKLTVL
|
1
|
297
| null | null |
303
|
340
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGGCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTAGCACTTTC
|
QSALTQPASVSGSPGQSITISCTGTSSDVGSYNLVSWYQQHPGKAPKLMIYEGSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCCSYAGSSTF
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGGCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTAGCACTTTC
|
QSALTQPASVSGSPGQSITISCTGTSSDVGSYNLVSWYQQHPGKAPKLMIYEGSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCCSYAGSSTF
| null | null | null | null |
TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACC
|
QSALTQPASVSGSPGQSITISCTGT
|
AGCAGTGATGTTGGGAGTTATAACCTT
|
SSDVGSYNL
|
GTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTAT
|
VSWYQQHPGKAPKLMIY
|
GAGGGCAGT
|
EGS
|
AAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGC
|
KRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
TGCTCATATGCAGGTAGTAGCACTTTCGGGTATGTGGTA
|
CSYAGSSTFGYVV
|
TGCTGCTCATATGCAGGTAGTAGCACTTTCGGGTATGTGGTATTC
|
45.0
|
CCSYAGSSTFGYVVF
|
15.0
|
464.595
| null |
73.749
|
95S297M254S
| null |
397S38M211S
|
1.0480000000000001e-132
| null |
3.971e-17
|
100.0
| null |
100.0
|
96
|
392
|
1
|
297
| null | null | null | null |
398
|
435
|
1
|
38
|
96
|
170
|
171
|
197
|
198
|
248
|
249
|
257
|
258
|
365
|
405.0
|
434.0
|
366.0
|
404.0
|
GGGTA
|
5
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'A', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'A', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'G', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'S', '19 ': 'I', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'T', '25 ': 'G', '26 ': 'T'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'D', '30 ': 'V', '31 ': 'G', '35 ': 'S', '36 ': 'Y', '37 ': 'N', '38 ': 'L'}, 'fwl2': {'39 ': 'V', '40 ': 'S', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'H', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'M', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'E', '57 ': 'G', '65 ': 'S'}, 'fwl3': {'66 ': 'K', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'S', '74 ': 'N', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'C', '106 ': 'S', '107 ': 'Y', '108 ': 'A', '109 ': 'G', '110 ': 'S', '111 ': 'S', '112 ': 'T', '113 ': 'F', '114 ': 'G', '115 ': 'Y', '116 ': 'V', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAAGTTACTGAC-1_contig_2
|
GAGCTCTGGGAGAGGAGCCCAGCACTAGAAGTCGGCGGTGTTTCCATTCGGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTTGGGCTGAGCTGGGTTTTCCTCGTTGCTCTTTTAAGAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAGATCGGGAAGGCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-30*18
|
IGHD3-10*01
|
IGHJ6*02
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAGATCGGGAAGGCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAGATCGGGNNNNCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDREGYYYYGMDVWGQGTTVTVSS
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDRXXYYYYGMDVWGQGTTVTVSS
|
1
|
296
|
297.0
|
301.0
|
306
|
363
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAGA
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAAAGA
|
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK
|
TCGGG
|
R
|
TCGGG
|
R
|
CTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
CTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
QVQLVESGGGVVQPGRSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATGGC
|
GFTFSSYG
|
ATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTT
|
MHWVRQAPGKGLEWVAV
|
ATATCATATGATGGAAGTAATAAA
|
ISYDGSNK
|
TACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAAAGATCGGGAAGGCTACTACTACTACGGTATGGACGTC
|
AKDREGYYYYGMDV
|
TGTGCGAAAGATCGGGAAGGCTACTACTACTACGGTATGGACGTCTGG
|
48.0
|
CAKDREGYYYYGMDVW
|
16.0
|
463.037
|
10.301
|
112.203
|
137S296M139S
|
433S13N5M134S13N
|
442S4N58M72S
|
2.7330000000000002e-132
|
203.2
|
9.319e-29
|
100.0
|
100.0
|
100.0
|
138
|
433
|
1
|
296
|
434.0
|
438.0
|
14.0
|
18.0
|
443
|
500
|
5
|
62
|
138
|
212
|
213
|
236
|
237
|
287
|
288
|
311
|
312
|
425
|
468.0
|
500.0
|
426.0
|
467.0
| null |
0
|
AAGG
|
4.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'V', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'G'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'A', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'Y', '59 ': 'D', '62 ': 'G', '63 ': 'S', '64 ': 'N', '65 ': 'K'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'D', '108 ': 'R', '109 ': 'E', '110 ': 'G', '111 ': 'Y', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAAGTTACTGAC-1_contig_1
|
GGGGAGGAGTCAGTCCCAACCAGGACACAGCATGGACATGAGGGTCCCTGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCTCAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCCATCACCTTCGGCCAAGGGACACGACTGGAGATTAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-33*01
| null |
IGKJ5*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCCATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCNATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPITFGQGTRLEIK
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPITFGQGTRLEIK
|
1
|
284
| null | null |
286
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLP
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLP
| null | null | null | null |
ATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
ATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGT
|
DIQMTQSPSSLSASVGDRVTITCQAS
|
CAGGACATTAGCAACTAT
|
QDISNY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAC
|
LNWYQQKPGKAPKLLIY
|
GATGCATCC
|
DAS
|
AATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGT
|
NLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYC
|
TTCGGCCAAGGGACACGACTGGAGATTAAA
|
FGQGTRLEIK
|
CAACAGTATGATAATCTCCCCATCACC
|
QQYDNLPIT
|
TGTCAACAGTATGATAATCTCCCCATCACCTTC
|
33.0
|
CQQYDNLPITF
|
11.0
|
444.34
| null |
71.827
|
97S284M174S3N
| null |
382S1N37M136S
|
1.125e-126
| null |
1.29e-16
|
100.0
| null |
100.0
|
98
|
381
|
1
|
284
| null | null | null | null |
383
|
419
|
2
|
38
|
98
|
175
|
176
|
193
|
194
|
244
|
245
|
253
|
254
|
361
|
389.0
|
418.0
|
362.0
|
388.0
|
C
|
1
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'Q', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'D', '29 ': 'I', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'L', '68 ': 'E', '69 ': 'T', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'F', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'I', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'D', '109 ': 'N', '114 ': 'L', '115 ': 'P', '116 ': 'I', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'R', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAATCACAACGT-1_contig_1
|
AGCTCTGAGAGAGGAGCCTTAGCCCTGGATTCCAAGGCCTATCCACTTGGTGATCAGCACTGAGCACCGAGGATTCACCATGGAACTGGGGCTCCGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGATTCCCTAGGGAGCAGCTGGGCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-21*01
|
IGHD6-13*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGATTCCCTAGGGAGCAGCTGGGCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGANNNNNNNNNNAGCAGCTGGNNCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARDSLGSSWAFDYWGQGTLVTVSS
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARXXXXSSWXFDYWGQGTLVTVSS
|
1
|
296
|
307.0
|
315.0
|
318
|
361
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
AGCAGCTGG
|
SSW
|
AGCAGCTGG
|
SSW
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVKPGGSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATAGC
|
GFTFSSYS
|
ATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCC
|
MNWVRQAPGKGLEWVSS
|
ATTAGTAGTAGTAGTAGTTACATA
|
ISSSSSYI
|
TACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGATTCCCTAGGGAGCAGCTGGGCCTTTGACTAC
|
ARDSLGSSWAFDY
|
TGTGCGAGAGATTCCCTAGGGAGCAGCTGGGCCTTTGACTACTGG
|
45.0
|
CARDSLGSSWAFDYW
|
15.0
|
463.037
|
17.992
|
85.286
|
136S296M136S
|
442S9N9M117S3N
|
453S4N44M71S
|
2.7120000000000002e-132
|
0.9763
|
1.173e-20
|
100.0
|
100.0
|
100.0
|
137
|
432
|
1
|
296
|
443.0
|
451.0
|
10.0
|
18.0
|
454
|
497
|
5
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
464.0
|
496.0
|
425.0
|
463.0
|
TTCCCTAGGG
|
10
|
GC
|
2.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'S'}, 'fwh2': {'39 ': 'M', '40 ': 'N', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'S'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'S', '59 ': 'S', '62 ': 'S', '63 ': 'S', '64 ': 'Y', '65 ': 'I'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'D', '108 ': 'S', '109 ': 'L', '110 ': 'G', '111 ': 'S', '112 ': 'S', '113 ': 'W', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAATCACAACGT-1_contig_2
|
AGGAGTCAGACCCTGTCAGGACACAGCATAGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCCCAGGTGCCAGATGTGCCATCCGGATGACCCAGTCTCCATCCTCATTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGTCAACAGTATTATAGTTACCCTCCTACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-8*01
| null |
IGKJ4*01
|
GCCATCCGGATGACCCAGTCTCCATCCTCATTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGTCAACAGTATTATAGTTACCCTCCTACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GCCATCCGGATGACCCAGTCTCCATCCTCATTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGTCAACAGTATTATAGTTACCCTCCNACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
AIRMTQSPSSFSASTGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTISCLQSEDFATYYCQQYYSYPPTFGGGTKVEIK
|
AIRMTQSPSSFSASTGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTISCLQSEDFATYYCQQYYSYPPTFGGGTKVEIK
|
1
|
287
| null | null |
289
|
322
|
GCCATCCGGATGACCCAGTCTCCATCCTCATTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGTCAACAGTATTATAGTTACCCTCC
|
AIRMTQSPSSFSASTGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTISCLQSEDFATYYCQQYYSYPP
|
GCCATCCGGATGACCCAGTCTCCATCCTCATTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGTCAACAGTATTATAGTTACCCTCC
|
AIRMTQSPSSFSASTGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTISCLQSEDFATYYCQQYYSYPP
| null | null | null | null |
ACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
TFGGGTKVEIK
|
ACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
TFGGGTKVEIK
|
GCCATCCGGATGACCCAGTCTCCATCCTCATTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGT
|
AIRMTQSPSSFSASTGDRVTITCRAS
|
CAGGGTATTAGCAGTTAT
|
QGISSY
|
TTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LAWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
ACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGT
|
TLQSGVPSRFSGSGSGTDFTLTISCLQSEDFATYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAACAGTATTATAGTTACCCTCCTACT
|
QQYYSYPPT
|
TGTCAACAGTATTATAGTTACCCTCCTACTTTC
|
33.0
|
CQQYYSYPPTF
|
11.0
|
449.014
| null |
66.059
|
93S287M171S
| null |
381S4N34M136S
|
4.3730000000000004e-128
| null |
6.977e-15
|
100.0
| null |
100.0
|
94
|
380
|
1
|
287
| null | null | null | null |
382
|
415
|
5
|
38
|
94
|
171
|
172
|
189
|
190
|
240
|
241
|
249
|
250
|
357
|
385.0
|
414.0
|
358.0
|
384.0
|
T
|
1
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'A', '2 ': 'I', '3 ': 'R', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'F', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'T', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'G', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'C', '94 ': 'L', '95 ': 'Q', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'Y', '109 ': 'S', '114 ': 'Y', '115 ': 'P', '116 ': 'P', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAATCAGATAAG-1_contig_2
|
GGGAGCATCACCCAGCAACCACATCTGTCCTCTAGAGAATCCCCTGAGAGCTCCGTTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCCACAGGAGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGATGGGGGTGACCCGTTCTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-2*02
|
IGHD2-21*02
|
IGHJ1*01
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGATGGGGGTGACCCGTTCTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGATGGTGGTGACNNNNNCTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDGGDPFFQHWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDGGDXXFQHWGQGTLVTVSS
|
1
|
296
|
297.0
|
306.0
|
312
|
355
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
TGGGGGTGAC
|
GGD
|
TGGTGGTGAC
|
GGD
|
CTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG
|
FQHWGQGTLVTVSS
|
CTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG
|
FQHWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCGGCTACTAT
|
GYTFTGYY
|
ATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGG
|
MHWVRQAPGQGLEWMGW
|
ATCAACCCTAACAGTGGTGGCACA
|
INPNSGGT
|
AACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYC
|
TGGGGCCAGGGCACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGATGGGGGTGACCCGTTCTTCCAGCAC
|
ARDGGDPFFQH
|
TGTGCGAGAGATGGGGGTGACCCGTTCTTCCAGCACTGG
|
39.0
|
CARDGGDPFFQHW
|
13.0
|
463.037
|
14.146
|
85.286
|
121S296M130S
|
417S9N10M120S9N
|
432S8N44M71S
|
2.607e-132
|
13.51
|
1.1290000000000001e-20
|
100.0
|
90.0
|
100.0
|
122
|
417
|
1
|
296
|
418.0
|
427.0
|
10.0
|
19.0
|
433
|
476
|
9
|
52
|
122
|
196
|
197
|
220
|
221
|
271
|
272
|
295
|
296
|
409
|
443.0
|
475.0
|
410.0
|
442.0
| null |
0
|
CCGTT
|
5.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'G', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'G', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'R', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'D', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'D', '108 ': 'G', '109 ': 'G', '110 ': 'D', '113 ': 'P', '114 ': 'F', '115 ': 'F', '116 ': 'Q', '117 ': 'H'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAATCAGATAAG-1_contig_1
|
GCCTGGGTCAGAGCTCTGGGGAGGAACTGCTCAGTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACTGGAGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTGCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-15*01
| null |
IGKJ4*01
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTGCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTNNGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPALTFGGGTKVEIK
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPXLTFGGGTKVEIK
|
1
|
285
| null | null |
288
|
325
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCT
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWP
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCT
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWP
| null | null | null | null |
GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVMTQSPATLSVSPGERATLSCRAS
|
CAGAGTGTTAGCAGCAAC
|
QSVSSN
|
TTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GGTGCATCC
|
GAS
|
ACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGT
|
TRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAGCAGTATAATAACTGGCCTGCGCTCACT
|
QQYNNWPALT
|
TGTCAGCAGTATAATAACTGGCCTGCGCTCACTTTC
|
36.0
|
CQQYNNWPALTF
|
12.0
|
445.898
| null |
73.749
|
113S285M176S2N
| null |
400S38M136S
|
3.937e-127
| null |
3.521e-17
|
100.0
| null |
100.0
|
114
|
398
|
1
|
285
| null | null | null | null |
401
|
438
|
1
|
38
|
114
|
191
|
192
|
209
|
210
|
260
|
261
|
269
|
270
|
377
|
408.0
|
437.0
|
378.0
|
407.0
|
GC
|
2
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'A', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '36 ': 'S', '37 ': 'S', '38 ': 'N'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'G', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'A', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'N', '109 ': 'N', '113 ': 'W', '114 ': 'P', '115 ': 'A', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAATCCTTTCGG-1_contig_2
|
GGGAGCATCACCCAGCAACCACATCTGTCCTCTAGAGAATCCCCTGAGAGCTCCGTTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCCACAGGAGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGGAGTTATAGCAGTGGCTGCCGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-2*02
|
IGHD6-19*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGGAGTTATAGCAGTGGCTGCCGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGNNNNTATAGCAGTGGCTGNNGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARGVIAVAADYWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARXXIAVAXDYWGQGTLVTVSS
|
1
|
295
|
300.0
|
313.0
|
316
|
355
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
TATAGCAGTGGCTG
|
IAVA
|
TATAGCAGTGGCTG
|
IAVA
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCGGCTACTAT
|
GYTFTGYY
|
ATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGG
|
MHWVRQAPGQGLEWMGW
|
ATCAACCCTAACAGTGGTGGCACA
|
INPNSGGT
|
AACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGGAGTTATAGCAGTGGCTGCCGACTAC
|
ARGVIAVAADY
|
TGTGCGAGAGGAGTTATAGCAGTGGCTGCCGACTACTGG
|
39.0
|
CARGVIAVAADYW
|
13.0
|
461.479
|
27.605
|
77.595
|
121S295M131S1N
|
420S3N14M113S4N
|
436S8N40M71S
|
7.677000000000001e-132
|
0.0012
|
2.332e-18
|
100.0
|
100.0
|
100.0
|
122
|
416
|
1
|
295
|
421.0
|
434.0
|
4.0
|
17.0
|
437
|
476
|
9
|
48
|
122
|
196
|
197
|
220
|
221
|
271
|
272
|
295
|
296
|
409
|
443.0
|
475.0
|
410.0
|
442.0
|
GAGT
|
4
|
CC
|
2.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'G', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'G', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'R', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'D', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'V', '109 ': 'I', '110 ': 'A', '113 ': 'V', '114 ': 'A', '115 ': 'A', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAATCCTTTCGG-1_contig_1
|
GGGGAGGAGTCAGTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGGCTCCGAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCTGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-39*01
| null |
IGKJ4*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCTGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCNGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTLLTFGGGTKVEIK
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTXLTFGGGTKVEIK
|
1
|
283
| null | null |
285
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYST
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYST
| null | null | null | null |
GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC
|
LTFGGGTKVEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGT
|
DIQMTQSPSSLSASVGDRVTITCRAS
|
CAGAGCATTAGCAGCTAT
|
QSISSY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LNWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTCGGCGGAGGGACCAAGGTGGAGATCAAA
|
FGGGTKVEIK
|
CAACAGAGTTACAGTACCCTGCTCACT
|
QQSYSTLLT
|
TGTCAACAGAGTTACAGTACCCTGCTCACTTTC
|
33.0
|
CQQSYSTLLTF
|
11.0
|
442.782
| null |
73.749
|
97S283M175S4N
| null |
381S38M136S
|
3.313e-126
| null |
3.402e-17
|
100.0
| null |
100.0
|
98
|
380
|
1
|
283
| null | null | null | null |
382
|
419
|
1
|
38
|
98
|
175
|
176
|
193
|
194
|
244
|
245
|
253
|
254
|
361
|
389.0
|
418.0
|
362.0
|
388.0
|
T
|
1
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'S', '108 ': 'Y', '109 ': 'S', '114 ': 'T', '115 ': 'L', '116 ': 'L', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAATCTTAGAGC-1_contig_1
|
TGGGAGCTCTGGGAGAGGAGCCCCAGCCCTGAGATTCCCAGGTGTTTCCATTCAGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTGGGACTGAGCTGGATTTTCCTTTTGGCTATTTTAAAAGGTGTCCAGTGTGAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATATATGCAGTGGTGGTAGCTGCTATTGGGCCCTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-9*01
|
IGHD2-15*01
|
IGHJ4*02
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATATATGCAGTGGTGGTAGCTGCTATTGGGCCCTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATANNNNNAGTGGTGGTAGCTGCTANNNNNNNNTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKDICSGGSCYWALDYWGQGTLVTVSS
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKDXXSGGSCXXXXDYWGQGTLVTVSS
|
1
|
298
|
304.0
|
320.0
|
329
|
370
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATA
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKD
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATA
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKD
|
AGTGGTGGTAGCTGCTA
|
SGGSC
|
AGTGGTGGTAGCTGCTA
|
SGGSC
|
TTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
TTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGRSLRLSCAAS
|
GGATTCACCTTTGATGATTATGCC
|
GFTFDDYA
|
ATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGT
|
MHWVRQAPGKGLEWVSG
|
ATTAGTTGGAATAGTGGTAGCATA
|
ISWNSGSI
|
GGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGT
|
GYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCAAAAGATATATGCAGTGGTGGTAGCTGCTATTGGGCCCTTGACTAC
|
AKDICSGGSCYWALDY
|
TGTGCAAAAGATATATGCAGTGGTGGTAGCTGCTATTGGGCCCTTGACTACTGG
|
54.0
|
CAKDICSGGSCYWALDYW
|
18.0
|
466.153
|
33.373
|
81.44
|
141S298M143S
|
444S10N17M121S4N
|
469S6N42M71S
|
3.1909999999999996e-133
|
2.345e-05
|
1.728e-19
|
100.0
|
100.0
|
100.0
|
142
|
439
|
1
|
298
|
445.0
|
461.0
|
11.0
|
27.0
|
470
|
511
|
7
|
48
|
142
|
216
|
217
|
240
|
241
|
291
|
292
|
315
|
316
|
429
|
478.0
|
510.0
|
430.0
|
477.0
|
TATGC
|
5
|
TTGGGCCC
|
8.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'D', '36 ': 'D', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'G'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'W', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'I'}, 'fwh3': {'66 ': 'G', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'L', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'D', '108 ': 'I', '109 ': 'C', '110 ': 'S', '111 ': 'G', '111A': 'G', '112B': 'S', '112A': 'C', '112 ': 'Y', '113 ': 'W', '114 ': 'A', '115 ': 'L', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAATCTTAGAGC-1_contig_2
|
GGGAGGAACTGCTCAGTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACTGGAGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCCCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-15*01
| null |
IGKJ1*01
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCCCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPPWTFGQGTKVEIK
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPPWTFGQGTKVEIK
|
1
|
287
| null | null |
288
|
325
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCCCC
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPP
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCC
|
EIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPP
| null | null | null | null |
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVMTQSPATLSVSPGERATLSCRAS
|
CAGAGTGTTAGCAGCAAC
|
QSVSSN
|
TTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GGTGCATCC
|
GAS
|
ACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGT
|
TRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAGCAGTATAATAACTGGCCCCCGTGGACG
|
QQYNNWPPWT
|
TGTCAGCAGTATAATAACTGGCCCCCGTGGACGTTC
|
36.0
|
CQQYNNWPPWTF
|
12.0
|
445.898
| null |
73.749
|
95S287M174S
| null |
382S38M136S
|
3.828e-127
| null |
3.408e-17
|
99.652
| null |
100.0
|
96
|
382
|
1
|
287
| null | null | null | null |
383
|
420
|
1
|
38
|
96
|
173
|
174
|
191
|
192
|
242
|
243
|
251
|
252
|
359
|
390.0
|
419.0
|
360.0
|
389.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'A', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '36 ': 'S', '37 ': 'S', '38 ': 'N'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'G', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'A', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'N', '109 ': 'N', '113 ': 'W', '114 ': 'P', '115 ': 'P', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGCAATCTTTAGTC-1_contig_2
|
GGGAGCATCACCCAGCAACCACATCTGTCCTCTAGAGAATCCCCTGAGAGCTCCGTTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCCACAGGAGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGACCATTACTATGATAGTAGTGGTTATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-2*06
|
IGHD3-22*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGACCATTACTATGATAGTAGTGGTTATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGANNATTACTATGATAGTAGTGGTTATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDHYYDSSGYFDYWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARXXYYDSSGYFDYWGQGTLVTVSS
|
1
|
296
|
299.0
|
321.0
|
322
|
364
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
ATTACTATGATAGTAGTGGTTAT
|
YYDSSGY
|
ATTACTATGATAGTAGTGGTTAT
|
YYDSSGY
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCGGCTACTAT
|
GYTFTGYY
|
ATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGACGG
|
MHWVRQAPGQGLEWMGR
|
ATCAACCCTAACAGTGGTGGCACA
|
INPNSGGT
|
AACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGACCATTACTATGATAGTAGTGGTTATTTTGACTAC
|
ARDHYYDSSGYFDY
|
TGTGCGAGAGACCATTACTATGATAGTAGTGGTTATTTTGACTACTGG
|
48.0
|
CARDHYYDSSGYFDYW
|
16.0
|
463.037
|
44.909
|
83.363
|
121S296M139S
|
419S2N23M114S6N
|
442S5N43M71S
|
2.652e-132
|
7.536e-09
|
4.3510000000000005e-20
|
100.0
|
100.0
|
100.0
|
122
|
417
|
1
|
296
|
420.0
|
442.0
|
3.0
|
25.0
|
443
|
485
|
6
|
48
|
122
|
196
|
197
|
220
|
221
|
271
|
272
|
295
|
296
|
409
|
452.0
|
484.0
|
410.0
|
451.0
|
CC
|
2
| null |
0.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'G', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'R'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'G', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'R', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'D', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'D', '108 ': 'H', '109 ': 'Y', '110 ': 'Y', '111 ': 'D', '112A': 'S', '112 ': 'S', '113 ': 'G', '114 ': 'Y', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGCAATCTTTAGTC-1_contig_1
|
ACTGCGGGGGTAAGAGGTTGTGTCCACCATGGCCTGGACTCCTCTCCTCCTCCTGTTCCTCTCTCACTGCACAGGTTCCCTCTCGCAGGCTGTGCTGACTCAGCCGTCTTCCCTCTCTGCATCTCCTGGAGCATCAGCCAGTCTCACCTGCACCTTGCGCAGTGGCATCAATGTTGGTACCTACAGGATATACTGGTACCAGCAGAAGCCAGGGAGTCCTCCCCAGTATCTCCTGAGGTACAAATCAGACTCAGATAAGCAGCAGGGCTCTGGAGTCCCCAGCCGCTTCTCTGGATCCAAAGATGCTTCGGCCAATGCAGGGATTTTACTCATCTCTGGGCTCCAGTCTGAGGATGAGGCTGACTATTACTGTATGATTTGGCACAGCAGCGCTTGGGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAGGTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV5-45*03
| null |
IGLJ1*01
|
CAGGCTGTGCTGACTCAGCCGTCTTCCCTCTCTGCATCTCCTGGAGCATCAGCCAGTCTCACCTGCACCTTGCGCAGTGGCATCAATGTTGGTACCTACAGGATATACTGGTACCAGCAGAAGCCAGGGAGTCCTCCCCAGTATCTCCTGAGGTACAAATCAGACTCAGATAAGCAGCAGGGCTCTGGAGTCCCCAGCCGCTTCTCTGGATCCAAAGATGCTTCGGCCAATGCAGGGATTTTACTCATCTCTGGGCTCCAGTCTGAGGATGAGGCTGACTATTACTGTATGATTTGGCACAGCAGCGCTTGGGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
CAGGCTGTGCTGACTCAGCCGTCTTCCCTCTCTGCATCTCCTGGAGCATCAGCCAGTCTCACCTGCACCTTGCGCAGTGGCATCAATGTTGGTACCTACAGGATATACTGGTACCAGCAGAAGCCAGGGAGTCCTCCCCAGTATCTCCTGAGGTACAAATCAGACTCAGATAAGCAGCAGGGCTCTGGAGTCCCCAGCCGCTTCTCTGGATCCAAAGATGCTTCGGCCAATGCAGGGATTTTACTCATCTCTGGGCTCCAGTCTGAGGATGAGGCTGACTATTACTGTATGATTTGGCACAGCAGCGCTTNNGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
QAVLTQPSSLSASPGASASLTCTLRSGINVGTYRIYWYQQKPGSPPQYLLRYKSDSDKQQGSGVPSRFSGSKDASANAGILLISGLQSEDEADYYCMIWHSSAWVFGTGTKVTVL
|
QAVLTQPSSLSASPGASASLTCTLRSGINVGTYRIYWYQQKPGSPPQYLLRYKSDSDKQQGSGVPSRFSGSKDASANAGILLISGLQSEDEADYYCMIWHSSAXVFGTGTKVTVL
|
1
|
310
| null | null |
313
|
346
|
CAGGCTGTGCTGACTCAGCCGTCTTCCCTCTCTGCATCTCCTGGAGCATCAGCCAGTCTCACCTGCACCTTGCGCAGTGGCATCAATGTTGGTACCTACAGGATATACTGGTACCAGCAGAAGCCAGGGAGTCCTCCCCAGTATCTCCTGAGGTACAAATCAGACTCAGATAAGCAGCAGGGCTCTGGAGTCCCCAGCCGCTTCTCTGGATCCAAAGATGCTTCGGCCAATGCAGGGATTTTACTCATCTCTGGGCTCCAGTCTGAGGATGAGGCTGACTATTACTGTATGATTTGGCACAGCAGCGCTT
|
QAVLTQPSSLSASPGASASLTCTLRSGINVGTYRIYWYQQKPGSPPQYLLRYKSDSDKQQGSGVPSRFSGSKDASANAGILLISGLQSEDEADYYCMIWHSSA
|
CAGGCTGTGCTGACTCAGCCGTCTTCCCTCTCTGCATCTCCTGGAGCATCAGCCAGTCTCACCTGCACCTTGCGCAGTGGCATCAATGTTGGTACCTACAGGATATACTGGTACCAGCAGAAGCCAGGGAGTCCTCCCCAGTATCTCCTGAGGTACAAATCAGACTCAGATAAGCAGCAGGGCTCTGGAGTCCCCAGCCGCTTCTCTGGATCCAAAGATGCTTCGGCCAATGCAGGGATTTTACTCATCTCTGGGCTCCAGTCTGAGGATGAGGCTGACTATTACTGTATGATTTGGCACAGCAGCGCTT
|
QAVLTQPSSLSASPGASASLTCTLRSGINVGTYRIYWYQQKPGSPPQYLLRYKSDSDKQQGSGVPSRFSGSKDASANAGILLISGLQSEDEADYYCMIWHSSA
| null | null | null | null |
GTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
VFGTGTKVTVL
|
GTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
VFGTGTKVTVL
|
CAGGCTGTGCTGACTCAGCCGTCTTCCCTCTCTGCATCTCCTGGAGCATCAGCCAGTCTCACCTGCACCTTGCGC
|
QAVLTQPSSLSASPGASASLTCTLR
|
AGTGGCATCAATGTTGGTACCTACAGG
|
SGINVGTYR
|
ATATACTGGTACCAGCAGAAGCCAGGGAGTCCTCCCCAGTATCTCCTGAGG
|
IYWYQQKPGSPPQYLLR
|
TACAAATCAGACTCAGATAAG
|
YKSDSDK
|
CAGCAGGGCTCTGGAGTCCCCAGCCGCTTCTCTGGATCCAAAGATGCTTCGGCCAATGCAGGGATTTTACTCATCTCTGGGCTCCAGTCTGAGGATGAGGCTGACTATTACTGT
|
QQGSGVPSRFSGSKDASANAGILLISGLQSEDEADYYC
|
TTCGGAACTGGGACCAAGGTCACCGTCCTA
|
FGTGTKVTVL
|
ATGATTTGGCACAGCAGCGCTTGGGTC
|
MIWHSSAWV
|
TGTATGATTTGGCACAGCAGCGCTTGGGTCTTC
|
33.0
|
CMIWHSSAWVF
|
11.0
|
484.851
| null |
66.059
|
85S310M247S2N
| null |
397S4N34M211S
|
8.321999999999999e-139
| null |
8.153e-15
|
100.0
| null |
100.0
|
86
|
395
|
1
|
310
| null | null | null | null |
398
|
431
|
5
|
38
|
86
|
160
|
161
|
187
|
188
|
238
|
239
|
259
|
260
|
373
|
401.0
|
430.0
|
374.0
|
400.0
|
GG
|
2
| null | null |
GTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'A', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'S', '9 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'A', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'L', '26 ': 'R'}, 'cdrl1': {'27 ': 'S', '28 ': 'G', '29 ': 'I', '30 ': 'N', '31 ': 'V', '35 ': 'G', '36 ': 'T', '37 ': 'Y', '38 ': 'R'}, 'fwl2': {'39 ': 'I', '40 ': 'Y', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'S', '49 ': 'P', '50 ': 'P', '51 ': 'Q', '52 ': 'Y', '53 ': 'L', '54 ': 'L', '55 ': 'R'}, 'cdrl2': {'56 ': 'Y', '57 ': 'K', '58 ': 'S', '59 ': 'D', '63 ': 'S', '64 ': 'D', '65 ': 'K'}, 'fwl3': {'66 ': 'Q', '67 ': 'Q', '68 ': 'G', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '81 ': 'D', '82 ': 'A', '83 ': 'S', '84 ': 'A', '85 ': 'N', '86 ': 'A', '87 ': 'G', '88 ': 'I', '89 ': 'L', '90 ': 'L', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'M', '106 ': 'I', '107 ': 'W', '108 ': 'H', '109 ': 'S', '114 ': 'S', '115 ': 'A', '116 ': 'W', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'T', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGTAGAGCGATCCC-1_contig_1
|
GGGGAGAGGAGCCCCAGCCCTGAGATTCCCAGGTGTTTCCATTCAGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTGGGACTGAGCTGGATTTTCCTTTTGGCTATTTTAAAAGGTGTCCAGTGTGAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAGTGCGACGAGATGGCTACAATTAATCGGTGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-9*01
|
IGHD5-12*01
|
IGHJ3*02
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAGTGCGACGAGATGGCTACAATTAATCGGTGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAANNNNNNNNNNNTGGCTACGATTANNNNNNNTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKCDEMATINRCAFDIWGQGTMVTVSS
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAXXXXXATIXXXAFDIWGQGTMVTVSS
|
1
|
293
|
305.0
|
316.0
|
324
|
370
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAA
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCA
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAA
|
EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCA
|
TGGCTACAATTA
|
ATI
|
TGGCTACGATTA
|
ATI
|
TGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
AFDIWGQGTMVTVSS
|
TGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
AFDIWGQGTMVTVSS
|
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGRSLRLSCAAS
|
GGATTCACCTTTGATGATTATGCC
|
GFTFDDYA
|
ATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGT
|
MHWVRQAPGKGLEWVSG
|
ATTAGTTGGAATAGTGGTAGCATA
|
ISWNSGSI
|
GGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGT
|
GYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYC
|
TGGGGCCAAGGGACAATGGTCACCGTCTCTTCA
|
WGQGTMVTVSS
|
GCAAAGTGCGACGAGATGGCTACAATTAATCGGTGTGCTTTTGATATC
|
AKCDEMATINRCAFDI
|
TGTGCAAAGTGCGACGAGATGGCTACAATTAATCGGTGTGCTTTTGATATCTGG
|
54.0
|
CAKCDEMATINRCAFDIW
|
18.0
|
458.363
|
17.992
|
91.054
|
132S293M148S5N
|
436S10N12M125S1N
|
455S3N47M71S
|
6.951e-131
|
0.9851
|
2.1719999999999997e-22
|
100.0
|
91.667
|
100.0
|
133
|
425
|
1
|
293
|
437.0
|
448.0
|
11.0
|
22.0
|
456
|
502
|
4
|
50
|
133
|
207
|
208
|
231
|
232
|
282
|
283
|
306
|
307
|
420
|
469.0
|
501.0
|
421.0
|
468.0
|
GTGCGACGAGA
|
11
|
ATCGGTG
|
7.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'R', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'D', '36 ': 'D', '37 ': 'Y', '38 ': 'A'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'G'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'W', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'I'}, 'fwh3': {'66 ': 'G', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'L', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'K', '107 ': 'C', '108 ': 'D', '109 ': 'E', '110 ': 'M', '111 ': 'A', '111A': 'T', '112B': 'I', '112A': 'N', '112 ': 'R', '113 ': 'C', '114 ': 'A', '115 ': 'F', '116 ': 'D', '117 ': 'I'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'M', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGTAGAGCGATCCC-1_contig_2
|
TGGGGGCTGGGATCTCAGGAGGCAGCTCTCTCGGAATATCTCCACCATGGCCTGGGCTCTGCTCCTCCTCACCCTCCTCACTCAGGGCACAGGATCCTGGGCTCAGTCTGCCCTGACTCAGCCTCCCTCCGTGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTAGTTATAACCGTGTCTCCTGGTACCAGCAGCCCCCAGGCACAGCCCCCAAACTCATGATTTATGAGGTCAGTAATCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGGTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTTATATACAAGCAGCAGCACTTTCGGTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV2-18*01
| null |
IGLJ2*01
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGTGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTAGTTATAACCGTGTCTCCTGGTACCAGCAGCCCCCAGGCACAGCCCCCAAACTCATGATTTATGAGGTCAGTAATCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGGTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTTATATACAAGCAGCAGCACTTTCGGTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGTGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTAGTTATAACCGTGTCTCCTGGTACCAGCAGCCCCCAGGCACAGCCCCCAAACTCATGATTTATGAGGTCAGTAATCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGGTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTTATATACAAGCAGCAGCACTTTCNNTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSALTQPPSVSGSPGQSVTISCTGTSSDVGSYNRVSWYQQPPGTAPKLMIYEVSNRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCSLYTSSSTFGVVFGGGTKLTVL
|
QSALTQPPSVSGSPGQSVTISCTGTSSDVGSYNRVSWYQQPPGTAPKLMIYEVSNRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCSLYTSSSTFXVVFGGGTKLTVL
|
1
|
297
| null | null |
300
|
337
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGTGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTAGTTATAACCGTGTCTCCTGGTACCAGCAGCCCCCAGGCACAGCCCCCAAACTCATGATTTATGAGGTCAGTAATCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGGTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTTATATACAAGCAGCAGCACTTTC
|
QSALTQPPSVSGSPGQSVTISCTGTSSDVGSYNRVSWYQQPPGTAPKLMIYEVSNRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCSLYTSSSTF
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGTGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTAGTTATAACCGTGTCTCCTGGTACCAGCAGCCCCCAGGCACAGCCCCCAAACTCATGATTTATGAGGTCAGTAATCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGGTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTTATATACAAGCAGCAGCACTTTC
|
QSALTQPPSVSGSPGQSVTISCTGTSSDVGSYNRVSWYQQPPGTAPKLMIYEVSNRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCSLYTSSSTF
| null | null | null | null |
TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VVFGGGTKLTVL
|
CAGTCTGCCCTGACTCAGCCTCCCTCCGTGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACC
|
QSALTQPPSVSGSPGQSVTISCTGT
|
AGCAGTGACGTTGGTAGTTATAACCGT
|
SSDVGSYNR
|
GTCTCCTGGTACCAGCAGCCCCCAGGCACAGCCCCCAAACTCATGATTTAT
|
VSWYQQPPGTAPKLMIY
|
GAGGTCAGT
|
EVS
|
AATCGGCCCTCAGGGGTCCCTGATCGCTTCTCTGGGTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGC
|
NRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
AGCTTATATACAAGCAGCAGCACTTTCGGTGTGGTA
|
SLYTSSSTFGVV
|
TGCAGCTTATATACAAGCAGCAGCACTTTCGGTGTGGTATTC
|
42.0
|
CSLYTSSSTFGVVF
|
14.0
|
464.595
| null |
73.749
|
103S297M251S
| null |
402S38M211S
|
1.057e-132
| null |
4.002e-17
|
100.0
| null |
100.0
|
104
|
400
|
1
|
297
| null | null | null | null |
403
|
440
|
1
|
38
|
104
|
178
|
179
|
205
|
206
|
256
|
257
|
265
|
266
|
373
|
410.0
|
439.0
|
374.0
|
409.0
|
GG
|
2
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'A', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'G', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'S', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'T', '25 ': 'G', '26 ': 'T'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'D', '30 ': 'V', '31 ': 'G', '35 ': 'S', '36 ': 'Y', '37 ': 'N', '38 ': 'R'}, 'fwl2': {'39 ': 'V', '40 ': 'S', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'T', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'M', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'E', '57 ': 'V', '65 ': 'S'}, 'fwl3': {'66 ': 'N', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'N', '86 ': 'T', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'S', '106 ': 'L', '107 ': 'Y', '108 ': 'T', '109 ': 'S', '110 ': 'S', '112 ': 'S', '113 ': 'T', '114 ': 'F', '115 ': 'G', '116 ': 'V', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGTAGAGCGTAGTG-1_contig_1
|
GGGATCACACAACAGCCACATCCCTCCCCTACAGAAGCCCCCAGAGCGCAGCACCTCACCATGGACTGCACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCTACAGGCACCCACGCCCAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGTTTCCGGATACACCCTCACTGAATTATCCATGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGAGGTTTTGATCCTGAAGATGGTGAAACAATCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTTGCACGGCACATTACTATGATAGTACGGCGACGGGGATGGGTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-24*01
|
IGHD3-22*01
|
IGHJ4*02
|
CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGTTTCCGGATACACCCTCACTGAATTATCCATGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGAGGTTTTGATCCTGAAGATGGTGAAACAATCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTTGCACGGCACATTACTATGATAGTACGGCGACGGGGATGGGTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGTTTCCGGATACACCCTCACTGAATTATCCATGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGAGGTTTTGATCCTGAAGATGGTGAAACAATCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTNNNNNNNNNNATTACTATGATAGTANNNNNNNNNNNNNNNNNTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETIYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCCTAHYYDSTATGMGFDYWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETIYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCXXXXYYDSXXXXXXFDYWGQGTLVTVSS
|
1
|
288
|
299.0
|
313.0
|
331
|
373
|
CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGTTTCCGGATACACCCTCACTGAATTATCCATGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGAGGTTTTGATCCTGAAGATGGTGAAACAATCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
QVQLVQSGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETIYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYC
|
CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGTTTCCGGATACACCCTCACTGAATTATCCATGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGAGGTTTTGATCCTGAAGATGGTGAAACAATCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
QVQLVQSGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETIYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYC
|
ATTACTATGATAGTA
|
YYDS
|
ATTACTATGATAGTA
|
YYDS
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGTTTCC
|
QVQLVQSGAEVKKPGASVKVSCKVS
|
GGATACACCCTCACTGAATTATCC
|
GYTLTELS
|
ATGCACTGGGTGCGACAGGCTCCTGGAAAAGGGCTTGAGTGGATGGGAGGT
|
MHWVRQAPGKGLEWMGG
|
TTTGATCCTGAAGATGGTGAAACA
|
FDPEDGET
|
ATCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCGAGGACACATCTACAGACACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGT
|
IYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
TGCACGGCACATTACTATGATAGTACGGCGACGGGGATGGGTTTTGACTAC
|
CTAHYYDSTATGMGFDY
|
TGTTGCACGGCACATTACTATGATAGTACGGCGACGGGGATGGGTTTTGACTACTGG
|
57.0
|
CCTAHYYDSTATGMGFDYW
|
19.0
|
450.572
|
29.528
|
83.363
|
117S288M156S8N
|
415S2N15M131S14N
|
447S5N43M71S
|
1.5140000000000002e-128
|
0.0003246
|
4.3910000000000006e-20
|
100.0
|
100.0
|
100.0
|
118
|
405
|
1
|
288
|
416.0
|
430.0
|
3.0
|
17.0
|
448
|
490
|
6
|
48
|
118
|
192
|
193
|
216
|
217
|
267
|
268
|
291
|
292
|
405
|
457.0
|
489.0
|
406.0
|
456.0
|
TGCACGGCAC
|
10
|
CGGCGACGGGGATGGGT
|
17.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'L', '35 ': 'T', '36 ': 'E', '37 ': 'L', '38 ': 'S'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'G'}, 'cdrh2': {'56 ': 'F', '57 ': 'D', '58 ': 'P', '59 ': 'E', '62 ': 'D', '63 ': 'G', '64 ': 'E', '65 ': 'T'}, 'fwh3': {'66 ': 'I', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'E', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'T', '85 ': 'D', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'C', '106 ': 'T', '107 ': 'A', '108 ': 'H', '109 ': 'Y', '110 ': 'Y', '111 ': 'D', '111A': 'S', '111B': 'T', '112B': 'A', '112A': 'T', '112 ': 'G', '113 ': 'M', '114 ': 'G', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGTAGAGCGTAGTG-1_contig_2
|
GCTCTGCTTCAGCTGTGGGCACAAGAGGCAGCACTCAGGACAATCTCCAGCATGGCCTGGTCTCCTCTCCTCCTCACTCTCCTCGCTCACTGCACAGGGTCCTGGGCCCAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTCGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV1-40*01
| null |
IGLJ2*01
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTCGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTCGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGSVFGGGTKLTVL
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGSVFGGGTKLTVL
|
1
|
299
| null | null |
300
|
334
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTC
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGS
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTC
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGS
| null | null | null | null |
GGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
GGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGC
|
QSVLTQPPSVSGAPGQRVTISCTGS
|
AGCTCCAACATCGGGGCAGGTTATGAT
|
SSNIGAGYD
|
GTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTAT
|
VHWYQQLPGTAPKLLIY
|
GGTAACAGC
|
GNS
|
AATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGC
|
NRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAGTCCTATGACAGCAGCCTGAGTGGTTCGGTA
|
QSYDSSLSGSV
|
TGCCAGTCCTATGACAGCAGCCTGAGTGGTTCGGTATTC
|
39.0
|
CQSYDSSLSGSVF
|
13.0
|
467.712
| null |
67.981
|
108S299M246S
| null |
407S3N35M211S
|
1.2229999999999999e-133
| null |
2.188e-15
|
100.0
| null |
100.0
|
109
|
407
|
1
|
299
| null | null | null | null |
408
|
442
|
4
|
38
|
109
|
183
|
184
|
210
|
211
|
261
|
262
|
270
|
271
|
378
|
412.0
|
441.0
|
379.0
|
411.0
| null |
0
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'G', '14 ': 'A', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'T', '25 ': 'G', '26 ': 'S'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'N', '30 ': 'I', '31 ': 'G', '35 ': 'A', '36 ': 'G', '37 ': 'Y', '38 ': 'D'}, 'fwl2': {'39 ': 'V', '40 ': 'H', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'L', '46 ': 'P', '47 ': 'G', '48 ': 'T', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'G', '57 ': 'N', '65 ': 'S'}, 'fwl3': {'66 ': 'N', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'S', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'A', '91 ': 'I', '92 ': 'T', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'S', '107 ': 'Y', '108 ': 'D', '109 ': 'S', '110 ': 'S', '113 ': 'L', '114 ': 'S', '115 ': 'G', '116 ': 'S', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGTAGAGCGTTCCG-1_contig_2
|
GGGAGAGGAGCCCAGCACTGGGATTCCGAGGTGTTTCCATTCGGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTTTGGCTGAGCTGGGTTTTCCTTGTTGCTATTTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGACACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCCGTGTATTACTGTGCGAGAGGCCAGGGACGATGGGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-53*04
|
IGHD3-3*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGACACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCCGTGTATTACTGTGCGAGAGGCCAGGGACGATGGGTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGACACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCCGTGTATTACTGTGCGAGAGNNNNNNNACGATNNNTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRHNSKNTLYLQMNSLRAEDTAVYYCARGQGRWVDYWGQGTLVTVSS
|
EVQLVESGGGLVQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRHNSKNTLYLQMNSLRAEDTAVYYCARXXXRXXDYWGQGTLVTVSS
|
1
|
292
|
300.0
|
304.0
|
308
|
349
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGACACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCCGTGTATTACTGTGCGAGAG
|
EVQLVESGGGLVQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRHNSKNTLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGACACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCCGTGTATTACTGTGCGAGAG
|
EVQLVESGGGLVQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRHNSKNTLYLQMNSLRAEDTAVYYCAR
|
ACGAT
|
R
|
ACGAT
|
R
|
TTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
TTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGGSLRLSCAAS
|
GGGTTCACCGTCAGTAGCAACTAC
|
GFTVSSNY
|
ATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTT
|
MSWVRQAPGKGLEWVSV
|
ATTTATAGCGGTGGTAGCACA
|
IYSGGST
|
TACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGACACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCCGTGTATTACTGT
|
YYADSVKGRFTISRHNSKNTLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGGCCAGGGACGATGGGTTGACTAC
|
ARGQGRWVDY
|
TGTGCGAGAGGCCAGGGACGATGGGTTGACTACTGG
|
36.0
|
CARGQGRWVDYW
|
12.0
|
456.805
|
10.301
|
81.44
|
130S292M128S1N
|
429S5N5M116S21N
|
437S6N42M71S
|
1.9709999999999998e-130
|
195.2
|
1.631e-19
|
100.0
|
100.0
|
100.0
|
131
|
422
|
1
|
292
|
430.0
|
434.0
|
6.0
|
10.0
|
438
|
479
|
7
|
48
|
131
|
205
|
206
|
229
|
230
|
280
|
281
|
301
|
302
|
415
|
446.0
|
478.0
|
416.0
|
445.0
|
GCCAGGG
|
7
|
GGG
|
3.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'V', '35 ': 'S', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'S', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'V'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'S', '59 ': 'G', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'H', '82 ': 'N', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'T', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'Q', '109 ': 'G', '113 ': 'R', '114 ': 'W', '115 ': 'V', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGTAGAGCGTTCCG-1_contig_1
|
AGGAGTCAGTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGGCTCCGAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCTGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-39*01
| null |
IGKJ1*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCTGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCNGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTLWTFGQGTKVEIK
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTXWTFGQGTKVEIK
|
1
|
283
| null | null |
285
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYST
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCC
|
DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYST
| null | null | null | null |
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
WTFGQGTKVEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGT
|
DIQMTQSPSSLSASVGDRVTITCRAS
|
CAGAGCATTAGCAGCTAT
|
QSISSY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LNWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
AGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGT
|
SLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAACAGAGTTACAGTACCCTGTGGACG
|
QQSYSTLWT
|
TGTCAACAGAGTTACAGTACCCTGTGGACGTTC
|
33.0
|
CQQSYSTLWTF
|
11.0
|
442.782
| null |
73.749
|
93S283M175S4N
| null |
377S38M136S
|
3.288e-126
| null |
3.377e-17
|
100.0
| null |
100.0
|
94
|
376
|
1
|
283
| null | null | null | null |
378
|
415
|
1
|
38
|
94
|
171
|
172
|
189
|
190
|
240
|
241
|
249
|
250
|
357
|
385.0
|
414.0
|
358.0
|
384.0
|
T
|
1
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'S', '108 ': 'Y', '109 ': 'S', '114 ': 'T', '115 ': 'L', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGTAGAGTCATCCA-1_contig_1
|
ATACTTTCTGAGAGTCCTGGACCTCCTGTGCAAGAACATGAAACATCTGTGGTTCTTCCTTCTCCTGGTGGCAGCTCCCAGATGGGTCCTGTCCCAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGAGATATACAGCTATGGCCCACCGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-59*01
|
IGHD5-18*01
|
IGHJ4*02
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGAGATATACAGCTATGGCCCACCGGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGANNNATACAGCTATGGNNNNNNNGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLQESGPGLVKPSETLSLTCTVSGGSISSYYWSWIRQPPGKGLEWIGYIYYSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAREIYSYGPPDYWGQGTLVTVSS
|
QVQLQESGPGLVKPSETLSLTCTVSGGSISSYYWSWIRQPPGKGLEWIGYIYYSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARXXYSYGXXDYWGQGTLVTVSS
|
1
|
293
|
297.0
|
308.0
|
316
|
355
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLQESGPGLVKPSETLSLTCTVSGGSISSYYWSWIRQPPGKGLEWIGYIYYSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLQESGPGLVKPSETLSLTCTVSGGSISSYYWSWIRQPPGKGLEWIGYIYYSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
ATACAGCTATGG
|
YSYG
|
ATACAGCTATGG
|
YSYG
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
GACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
DYWGQGTLVTVSS
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QVQLQESGPGLVKPSETLSLTCTVS
|
GGTGGCTCCATCAGTAGTTACTAC
|
GGSISSYY
|
TGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTAT
|
WSWIRQPPGKGLEWIGY
|
ATCTATTACAGTGGGAGCACC
|
IYYSGST
|
AACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGT
|
NYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGAGATATACAGCTATGGCCCACCGGACTAC
|
AREIYSYGPPDY
|
TGTGCGAGAGAGATATACAGCTATGGCCCACCGGACTACTGG
|
42.0
|
CAREIYSYGPPDYW
|
14.0
|
458.363
|
23.76
|
77.595
|
94S293M133S
|
390S4N12M118S4N
|
409S8N40M71S
|
6.309999999999999e-131
|
0.01637
|
2.215e-18
|
100.0
|
100.0
|
100.0
|
95
|
387
|
1
|
293
|
391.0
|
402.0
|
5.0
|
16.0
|
410
|
449
|
9
|
48
|
95
|
169
|
170
|
193
|
194
|
244
|
245
|
265
|
266
|
379
|
416.0
|
448.0
|
380.0
|
415.0
|
GAT
|
3
|
CCCACCG
|
7.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'E', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'S', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'Y'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'Y', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'E', '108 ': 'I', '109 ': 'Y', '110 ': 'S', '112 ': 'Y', '113 ': 'G', '114 ': 'P', '115 ': 'P', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGTAGAGTCATCCA-1_contig_2
|
AGCTTCAGCTGTGGTAGAGAAGACAGGATTCAGGACAATCTCCAGCATGGCCGGCTTCCCTCTCCTCCTCACCCTCCTCACTCACTGTGCAGGGTCCTGGGCCCAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGGTCGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV1-47*01
| null |
IGLJ3*02
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGGTCGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGGTCGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSGRVFGGGTKLTVL
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSGRVFGGGTKLTVL
|
1
|
295
| null | null |
296
|
331
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGGTC
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSG
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCTCCAACATCGGAAGTAATTATGTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTATAGGAATAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGTGCAGCATGGGATGACAGCCTGAGTGGTC
|
QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLSG
| null | null | null | null |
GGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
GGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
CAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGC
|
QSVLTQPPSASGTPGQRVTISCSGS
|
AGCTCCAACATCGGAAGTAATTAT
|
SSNIGSNY
|
GTATACTGGTACCAGCAGCTCCCAGGAACGGCCCCCAAACTCCTCATCTAT
|
VYWYQQLPGTAPKLLIY
|
AGGAATAAT
|
RNN
|
CAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCGGTCCGAGGATGAGGCTGATTATTACTGT
|
QRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
GCAGCATGGGATGACAGCCTGAGTGGTCGGGTG
|
AAWDDSLSGRV
|
TGTGCAGCATGGGATGACAGCCTGAGTGGTCGGGTGTTC
|
39.0
|
CAAWDDSLSGRVF
|
13.0
|
461.479
| null |
69.904
|
103S295M247S1N
| null |
398S2N36M211S
|
9.077e-132
| null |
5.699e-16
|
100.0
| null |
100.0
|
104
|
398
|
1
|
295
| null | null | null | null |
399
|
434
|
3
|
38
|
104
|
178
|
179
|
202
|
203
|
253
|
254
|
262
|
263
|
370
|
404.0
|
433.0
|
371.0
|
403.0
| null |
0
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'A', '12 ': 'S', '13 ': 'G', '14 ': 'T', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'S'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'N', '30 ': 'I', '35 ': 'G', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwl2': {'39 ': 'V', '40 ': 'Y', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'L', '46 ': 'P', '47 ': 'G', '48 ': 'T', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'R', '57 ': 'N', '65 ': 'N'}, 'fwl3': {'66 ': 'Q', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'S', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'A', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'A', '106 ': 'A', '107 ': 'W', '108 ': 'D', '109 ': 'D', '110 ': 'S', '113 ': 'L', '114 ': 'S', '115 ': 'G', '116 ': 'R', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGTAGAGTGTCCCG-1_contig_1
|
GAGGGTCCTGCTCACATGGGAAATACTTTCTGAGAGTCCTGGACCTCCTGTGCAAGAACATGAAACACCTGTGGTTCTTCCTCCTGCTGGTGGCAGCTCCCAGATGGGTCCTGTCCCAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAGCCCTGAGGACCTTTGAGGGGGATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-30-4*01
|
IGHD3-16*01
|
IGHJ6*02
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAGCCCTGAGGACCTTTGAGGGGGATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAGNNNNNNNNNNNNNNNNGGGGGATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARALRTFEGDYYYYYGMDVWGQGTTVTVSS
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARXXXXXXGDYYYYYGMDVWGQGTTVTVSS
|
1
|
298
|
315.0
|
319.0
|
320
|
381
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGATTACTACTGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGTGCCAGAG
|
QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGDYYWSWIRQPPGKGLEWIGYIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
GGGGG
|
G
|
GGGGG
|
G
|
ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYYGMDVWGQGTTVTVSS
|
ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYYGMDVWGQGTTVTVSS
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QVQLQESGPGLVKPSQTLSLTCTVS
|
GGTGGCTCCATCAGCAGTGGTGATTACTAC
|
GGSISSGDYY
|
TGGAGTTGGATCCGCCAGCCCCCAGGGAAGGGCCTGGAGTGGATTGGGTAC
|
WSWIRQPPGKGLEWIGY
|
ATCTATTACAGTGGGAGCACC
|
IYYSGST
|
TACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCAGACACGGCCGTGTATTACTGT
|
YYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCCAGAGCCCTGAGGACCTTTGAGGGGGATTACTACTACTACTACGGTATGGACGTC
|
ARALRTFEGDYYYYYGMDV
|
TGTGCCAGAGCCCTGAGGACCTTTGAGGGGGATTACTACTACTACTACGGTATGGACGTCTGG
|
63.0
|
CARALRTFEGDYYYYYGMDVW
|
21.0
|
466.153
|
10.301
|
119.894
|
116S298M155S1N
|
430S17N5M134S15N
|
435S62M72S
|
3.1339999999999997e-133
|
202.1
|
4.486e-31
|
100.0
|
100.0
|
100.0
|
117
|
414
|
1
|
298
|
431.0
|
435.0
|
18.0
|
22.0
|
436
|
497
|
1
|
62
|
117
|
191
|
192
|
221
|
222
|
272
|
273
|
293
|
294
|
407
|
465.0
|
497.0
|
408.0
|
464.0
|
CCCTGAGGACCTTTGA
|
16
| null |
0.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'Q', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '34 ': 'S', '35 ': 'G', '36 ': 'D', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'S', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'Y'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'Y', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'A', '108 ': 'L', '109 ': 'R', '110 ': 'T', '111 ': 'F', '111A': 'E', '111B': 'G', '111C': 'D', '112C': 'Y', '112B': 'Y', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGTAGAGTGTCCCG-1_contig_2
|
GATCAGGACTCCTCAGTTCACCTTCTCACAATGAGGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCTCTGGGTCTCTGGATCCAGTGGGGATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACCCCTATCACCTTCGGCCAAGGGACACGACTGGAGATTAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV2-28*01
| null |
IGKJ5*01
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACCCCTATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCTATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTPITFGQGTRLEIK
|
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTPITFGQGTRLEIK
|
1
|
300
| null | null |
301
|
337
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACCCCT
|
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTP
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCT
|
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTP
| null | null | null | null |
ATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
ATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGT
|
DIVMTQSPLSLPVTPGEPASISCRSS
|
CAGAGCCTCCTGCATAGTAATGGATACAACTAT
|
QSLLHSNGYNY
|
TTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTAT
|
LDWYLQKPGQSPQLLIY
|
TTGGGTTCT
|
LGS
|
AATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGC
|
NRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC
|
TTCGGCCAAGGGACACGACTGGAGATTAAA
|
FGQGTRLEIK
|
ATGCAAGCTCTACAAACCCCTATCACC
|
MQALQTPIT
|
TGCATGCAAGCTCTACAAACCCCTATCACCTTC
|
33.0
|
CMQALQTPITF
|
11.0
|
466.153
| null |
71.827
|
90S300M173S2N
| null |
390S1N37M136S
|
3.0989999999999997e-133
| null |
1.309e-16
|
99.667
| null |
100.0
|
91
|
390
|
1
|
300
| null | null | null | null |
391
|
427
|
2
|
38
|
91
|
168
|
169
|
201
|
202
|
252
|
253
|
261
|
262
|
369
|
397.0
|
426.0
|
370.0
|
396.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'V', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'L', '10 ': 'S', '11 ': 'L', '12 ': 'P', '13 ': 'V', '14 ': 'T', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'P', '19 ': 'A', '20 ': 'S', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'S', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'L', '30 ': 'L', '31 ': 'H', '32 ': 'S', '34 ': 'N', '35 ': 'G', '36 ': 'Y', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'D', '41 ': 'W', '42 ': 'Y', '43 ': 'L', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'S', '50 ': 'P', '51 ': 'Q', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'L', '57 ': 'G', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'A', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'K', '91 ': 'I', '92 ': 'S', '93 ': 'R', '94 ': 'V', '95 ': 'E', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'V', '100 ': 'G', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'M', '106 ': 'Q', '107 ': 'A', '108 ': 'L', '109 ': 'Q', '114 ': 'T', '115 ': 'P', '116 ': 'I', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'R', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGTAGCACTGCCAG-1_contig_2
|
GGGAGCATCACCCAGCAACCACATCTGTCCTCTAGAGAATCCCCTGAGAGCTCCGTTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCCACAGGAGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGGCGGGAGATTACGATTTTTGGAGTGGTTACCTAGGCCGTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-2*02
|
IGHD3-3*01
|
IGHJ4*02
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGGCGGGAGATTACGATTTTTGGAGTGGTTACCTAGGCCGTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGNNNNNNNATTACGATTTTTGGAGTGGTTANNNNNNNNNTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARGGRLRFLEWLPRPFDYWGQGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARXXXLRFLEWLXXXFDYWGQGTLVTVSS
|
1
|
295
|
303.0
|
324.0
|
334
|
376
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
ATTACGATTTTTGGAGTGGTTA
|
LRFLEWL
|
ATTACGATTTTTGGAGTGGTTA
|
LRFLEWL
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
TTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCGGCTACTAT
|
GYTFTGYY
|
ATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGG
|
MHWVRQAPGQGLEWMGW
|
ATCAACCCTAACAGTGGTGGCACA
|
INPNSGGT
|
AACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGGCGGGAGATTACGATTTTTGGAGTGGTTACCTAGGCCGTTTGACTAC
|
ARGGRLRFLEWLPRPFDY
|
TGTGCGAGAGGCGGGAGATTACGATTTTTGGAGTGGTTACCTAGGCCGTTTGACTACTGG
|
60.0
|
CARGGRLRFLEWLPRPFDYW
|
20.0
|
461.479
|
42.986
|
83.363
|
121S295M152S1N
|
423S2N22M123S7N
|
454S5N43M71S
|
7.987000000000001e-132
|
2.92e-08
|
4.4470000000000005e-20
|
100.0
|
100.0
|
100.0
|
122
|
416
|
1
|
295
|
424.0
|
445.0
|
3.0
|
24.0
|
455
|
497
|
6
|
48
|
122
|
196
|
197
|
220
|
221
|
271
|
272
|
295
|
296
|
409
|
464.0
|
496.0
|
410.0
|
463.0
|
GCGGGAG
|
7
|
CCTAGGCCG
|
9.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'G', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'G', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'R', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'D', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'G', '109 ': 'R', '110 ': 'L', '111 ': 'R', '111A': 'F', '111B': 'L', '112C': 'E', '112B': 'W', '112A': 'L', '112 ': 'P', '113 ': 'R', '114 ': 'P', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGTAGCACTGCCAG-1_contig_1
|
AGGAGTCAGACCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCCCAGGTGCCAAATGTGACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-5*03
| null |
IGKJ1*01
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYWTFGQGTKVEIK
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYWTFGQGTKVEIK
|
1
|
283
| null | null |
284
|
319
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATT
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSY
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATT
|
DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSY
| null | null | null | null |
GGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
GGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC
|
TFGQGTKVEIK
|
GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGT
|
DIQMTQSPSTLSASVGDRVTITCRAS
|
CAGAGTATTAGTAGCTGG
|
QSISSW
|
TTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LAWYQQKPGKAPKLLIY
|
AAGGCGTCT
|
KAS
|
AGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGC
|
SLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYC
|
TTCGGCCAAGGGACCAAGGTGGAAATCAAA
|
FGQGTKVEIK
|
CAACAGTATAATAGTTATTGGACG
|
QQYNSYWT
|
TGCCAACAGTATAATAGTTATTGGACGTTC
|
30.0
|
CQQYNSYWTF
|
10.0
|
442.782
| null |
69.904
|
93S283M172S4N
| null |
376S2N36M136S
|
3.269e-126
| null |
4.827e-16
|
100.0
| null |
100.0
|
94
|
376
|
1
|
283
| null | null | null | null |
377
|
412
|
3
|
38
|
94
|
171
|
172
|
189
|
190
|
240
|
241
|
249
|
250
|
357
|
382.0
|
411.0
|
358.0
|
381.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'W'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'K', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'S', '67 ': 'L', '68 ': 'E', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'D', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'N', '114 ': 'S', '115 ': 'Y', '116 ': 'W', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGTAGCATACAGCT-1_contig_2
|
GGGAGCATCACCCAGCAACCACATCTGTCCTCTAGAGAATCCCCTGAGAGCTCCGTTCCTCACCATGGACTGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCCACAGGAGCCCACTCCCAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGATAAAGGTATAGCAGTGGCTTCGCCGGGCTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV1-2*02
|
IGHD6-19*01
|
IGHJ2*01
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGATAAAGGTATAGCAGTGGCTTCGCCGGGCTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGANNNNGGTATAGCAGTGGCTNNNNNNNNNTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKGIAVASPGYFDLWGRGTLVTVSS
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARXXGIAVAXXXYFDLWGRGTLVTVSS
|
1
|
296
|
301.0
|
315.0
|
325
|
370
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA
|
QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCAR
|
GGTATAGCAGTGGCT
|
GIAVA
|
GGTATAGCAGTGGCT
|
GIAVA
|
TACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG
|
YFDLWGRGTLVTVSS
|
TACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG
|
YFDLWGRGTLVTVSS
|
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCT
|
QVQLVQSGAEVKKPGASVKVSCKAS
|
GGATACACCTTCACCGGCTACTAT
|
GYTFTGYY
|
ATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGG
|
MHWVRQAPGQGLEWMGW
|
ATCAACCCTAACAGTGGTGGCACA
|
INPNSGGT
|
AACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGT
|
NYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYC
|
TGGGGCCGTGGCACCCTGGTCACTGTCTCCTCA
|
WGRGTLVTVSS
|
GCGAGAGATAAAGGTATAGCAGTGGCTTCGCCGGGCTACTTCGATCTC
|
ARDKGIAVASPGYFDL
|
TGTGCGAGAGATAAAGGTATAGCAGTGGCTTCGCCGGGCTACTTCGATCTCTGG
|
54.0
|
CARDKGIAVASPGYFDLW
|
18.0
|
463.037
|
29.528
|
89.131
|
121S296M145S
|
421S1N15M126S5N
|
445S7N46M71S
|
2.682e-132
|
0.0003252
|
8.071999999999999e-22
|
100.0
|
100.0
|
100.0
|
122
|
417
|
1
|
296
|
422.0
|
436.0
|
2.0
|
16.0
|
446
|
491
|
8
|
53
|
122
|
196
|
197
|
220
|
221
|
271
|
272
|
295
|
296
|
409
|
458.0
|
490.0
|
410.0
|
457.0
|
TAAA
|
4
|
TCGCCGGGC
|
9.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'Q', '7 ': 'S', '8 ': 'G', '9 ': 'A', '11 ': 'E', '12 ': 'V', '13 ': 'K', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'A', '18 ': 'S', '19 ': 'V', '20 ': 'K', '21 ': 'V', '22 ': 'S', '23 ': 'C', '24 ': 'K', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'Y', '29 ': 'T', '30 ': 'F', '35 ': 'T', '36 ': 'G', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'M', '40 ': 'H', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'M', '54 ': 'G', '55 ': 'W'}, 'cdrh2': {'56 ': 'I', '57 ': 'N', '58 ': 'P', '59 ': 'N', '62 ': 'S', '63 ': 'G', '64 ': 'G', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'A', '69 ': 'Q', '70 ': 'K', '71 ': 'F', '72 ': 'Q', '74 ': 'G', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'M', '79 ': 'T', '80 ': 'R', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'I', '85 ': 'S', '86 ': 'T', '87 ': 'A', '88 ': 'Y', '89 ': 'M', '90 ': 'E', '91 ': 'L', '92 ': 'S', '93 ': 'R', '94 ': 'L', '95 ': 'R', '96 ': 'S', '97 ': 'D', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'D', '108 ': 'K', '109 ': 'G', '110 ': 'I', '111 ': 'A', '111A': 'V', '112B': 'A', '112A': 'S', '112 ': 'P', '113 ': 'G', '114 ': 'Y', '115 ': 'F', '116 ': 'D', '117 ': 'L'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'R', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGTAGCATACAGCT-1_contig_1
|
TGGGAGGAGTCAGTCCCAACCAGGACACAGCATGGACATGAGGGTCCCTGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCTCAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-33*01
| null |
IGKJ2*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPYTFGQGTKLEIK
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPYTFGQGTKLEIK
|
1
|
284
| null | null |
285
|
322
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLP
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLP
| null | null | null | null |
GTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
GTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
YTFGQGTKLEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGT
|
DIQMTQSPSSLSASVGDRVTITCQAS
|
CAGGACATTAGCAACTAT
|
QDISNY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAC
|
LNWYQQKPGKAPKLLIY
|
GATGCATCC
|
DAS
|
AATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGT
|
NLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYC
|
TTTGGCCAGGGGACCAAGCTGGAGATCAAA
|
FGQGTKLEIK
|
CAACAGTATGATAATCTCCCGTACACT
|
QQYDNLPYT
|
TGTCAACAGTATGATAATCTCCCGTACACTTTT
|
33.0
|
CQQYDNLPYTF
|
11.0
|
444.34
| null |
73.749
|
97S284M174S3N
| null |
381S1N38M136S
|
1.125e-126
| null |
3.402e-17
|
100.0
| null |
100.0
|
98
|
381
|
1
|
284
| null | null | null | null |
382
|
419
|
2
|
39
|
98
|
175
|
176
|
193
|
194
|
244
|
245
|
253
|
254
|
361
|
389.0
|
418.0
|
362.0
|
388.0
| null |
0
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'Q', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'D', '29 ': 'I', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'L', '68 ': 'E', '69 ': 'T', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'F', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'I', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'D', '109 ': 'N', '114 ': 'L', '115 ': 'P', '116 ': 'Y', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGTAGCATGTCGAT-1_contig_1
|
AGCTCTCAGAGAGGTGCCTTAGCCCTGGATTCCAAGGCATTTCCACTTGGTGATCAGCACTGAACACAGAGGACTCACCATGGAGTTGGGGCTGTGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGTTATGAAATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGACGGTTTGTCATAGCGACTGGAACTACGACCTATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-48*03
|
IGHD1-7*01
|
IGHJ6*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGTTATGAAATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGACGGTTTGTCATAGCGACTGGAACTACGACCTATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGTTATGAAATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGANNNNNNNNNNNNNNNACTGGAACTACNNNNNATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYEMNWVRQAPGKGLEWVSYISSSGSTIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARRFVIATGTTTYYYYYYGMDVWGQGTTVTVSS
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYEMNWVRQAPGKGLEWVSYISSSGSTIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARXXXXXTGTTXXYYYYYGMDVWGQGTTVTVSS
|
1
|
294
|
310.0
|
320.0
|
326
|
387
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGTTATGAAATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYEMNWVRQAPGKGLEWVSYISSSGSTIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGTTATGAAATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGA
|
EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYEMNWVRQAPGKGLEWVSYISSSGSTIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR
|
ACTGGAACTAC
|
TGTT
|
ACTGGAACTAC
|
TGTT
|
ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYYGMDVWGQGTTVTVSS
|
ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYYGMDVWGQGTTVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVQPGGSLRLSCAAS
|
GGATTCACCTTCAGTAGTTATGAA
|
GFTFSSYE
|
ATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATAC
|
MNWVRQAPGKGLEWVSY
|
ATTAGTAGTAGTGGTAGTACCATA
|
ISSSGSTI
|
TACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGT
|
YYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAGACGGTTTGTCATAGCGACTGGAACTACGACCTATTACTACTACTACTACGGTATGGACGTC
|
ARRFVIATGTTTYYYYYYGMDV
|
TGTGCGAGACGGTTTGTCATAGCGACTGGAACTACGACCTATTACTACTACTACTACGGTATGGACGTCTGG
|
72.0
|
CARRFVIATGTTTYYYYYYGMDVW
|
24.0
|
459.921
|
21.837
|
119.894
|
136S294M165S2N
|
445S6N11M139S
|
461S62M72S
|
2.4560000000000004e-131
|
0.07121
|
4.695000000000001e-31
|
100.0
|
100.0
|
100.0
|
137
|
430
|
1
|
294
|
446.0
|
456.0
|
7.0
|
17.0
|
462
|
523
|
1
|
62
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
491.0
|
523.0
|
425.0
|
490.0
|
CGGTTTGTCATAGCG
|
15
|
GACCT
|
5.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'Q', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'E'}, 'fwh2': {'39 ': 'M', '40 ': 'N', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'Y'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'S', '59 ': 'S', '62 ': 'G', '63 ': 'S', '64 ': 'T', '65 ': 'I'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'R', '108 ': 'F', '109 ': 'V', '110 ': 'I', '111 ': 'A', '111A': 'T', '111B': 'G', '111C': 'T', '111D': 'T', '112E': 'T', '112D': 'Y', '112C': 'Y', '112B': 'Y', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGTAGCATGTCGAT-1_contig_2
|
GGAGTCAGTCCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCCCAGGTGCCAGATGTGACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTCCGGAGACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-9*01
| null |
IGKJ2*01
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTCCGGAGACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTCCNNNNACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSYPPETFGQGTKLEIK
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSYPPXTFGQGTKLEIK
|
1
|
287
| null | null |
292
|
325
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTCC
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSYPP
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTCC
|
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSYPP
| null | null | null | null |
ACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
TFGQGTKLEIK
|
ACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC
|
TFGQGTKLEIK
|
GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGT
|
DIQLTQSPSFLSASVGDRVTITCRAS
|
CAGGGCATTAGCAGTTAT
|
QGISSY
|
TTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAT
|
LAWYQQKPGKAPKLLIY
|
GCTGCATCC
|
AAS
|
ACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGT
|
TLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYC
|
TTTGGCCAGGGGACCAAGCTGGAGATCAAA
|
FGQGTKLEIK
|
CAACAGCTTAATAGTTACCCTCCGGAGACT
|
QQLNSYPPET
|
TGTCAACAGCTTAATAGTTACCCTCCGGAGACTTTT
|
36.0
|
CQQLNSYPPETF
|
12.0
|
449.014
| null |
66.059
|
92S287M174S
| null |
383S5N34M136S
|
4.3899999999999996e-128
| null |
7.003e-15
|
100.0
| null |
100.0
|
93
|
379
|
1
|
287
| null | null | null | null |
384
|
417
|
6
|
39
|
93
|
170
|
171
|
188
|
189
|
239
|
240
|
248
|
249
|
356
|
387.0
|
416.0
|
357.0
|
386.0
|
GGAG
|
4
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'F', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'G', '29 ': 'I', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'A', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'T', '67 ': 'L', '68 ': 'Q', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'E', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'L', '108 ': 'N', '109 ': 'S', '113 ': 'Y', '114 ': 'P', '115 ': 'P', '116 ': 'E', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGTAGGTAAATACG-1_contig_1
|
ACTTTCTGAGAGTCCTGGACCTCCTGTGCAAGAACATGAAACATCTGTGGTTCTTCCTTCTCCTGGTGGCAGCTCCCAGATGGGTCCTGTCCCAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGGGTCGGATACAGCTATGGTTACTAACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-59*01
|
IGHD5-18*01
|
IGHJ4*02
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGGGTCGGATACAGCTATGGTTACTAACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGNNNNGGATACAGCTATGGTTACNNACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QVQLQESGPGLVKPSETLSLTCTVSGGSISSYYWSWIRQPPGKGLEWIGYIYYSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARGSDTAMVTNWGQGTLVTVSS
|
QVQLQESGPGLVKPSETLSLTCTVSGGSISSYYWSWIRQPPGKGLEWIGYIYYSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARXXDTAMVTXWGQGTLVTVSS
|
1
|
292
|
297.0
|
314.0
|
317
|
352
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLQESGPGLVKPSETLSLTCTVSGGSISSYYWSWIRQPPGKGLEWIGYIYYSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAG
|
QVQLQESGPGLVKPSETLSLTCTVSGGSISSYYWSWIRQPPGKGLEWIGYIYYSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
GGATACAGCTATGGTTAC
|
DTAMVT
|
GGATACAGCTATGGTTAC
|
DTAMVT
|
ACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WGQGTLVTVSS
|
ACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WGQGTLVTVSS
|
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QVQLQESGPGLVKPSETLSLTCTVS
|
GGTGGCTCCATCAGTAGTTACTAC
|
GGSISSYY
|
TGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTAT
|
WSWIRQPPGKGLEWIGY
|
ATCTATTACAGTGGGAGCACC
|
IYYSGST
|
AACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGT
|
NYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGAGGGTCGGATACAGCTATGGTTACTAAC
|
ARGSDTAMVTN
|
TGTGCGAGAGGGTCGGATACAGCTATGGTTACTAACTGG
|
39.0
|
CARGSDTAMVTNW
|
13.0
|
456.805
|
35.296
|
69.904
|
92S292M131S1N
|
388S2N18M109S
|
408S12N36M71S
|
1.839e-130
|
5.46e-06
|
4.53e-16
|
100.0
|
100.0
|
100.0
|
93
|
384
|
1
|
292
|
389.0
|
406.0
|
3.0
|
20.0
|
409
|
444
|
13
|
48
|
93
|
167
|
168
|
191
|
192
|
242
|
243
|
263
|
264
|
377
|
411.0
|
443.0
|
378.0
|
410.0
|
GGTC
|
4
|
TA
|
2.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'E', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'S', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'Y'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'Y', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'N', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'G', '108 ': 'S', '109 ': 'D', '110 ': 'T', '113 ': 'A', '114 ': 'M', '115 ': 'V', '116 ': 'T', '117 ': 'N'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGTAGGTAAATACG-1_contig_2
|
TGGGGGCTGTGGGTCCAGGAGGCAGAACTCTGGGTGTCTCACCATGGCCTGGATCCCTCTACTTCTCCCCCTCCTCACTCTCTGCACAGGCTCTGAGGCCTCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV3-25*03
| null |
IGLJ3*02
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGTWVFGGGTKLTVL
|
SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGTWVFGGGTKLTVL
|
1
|
286
| null | null |
287
|
322
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTT
|
SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGT
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGATGCATTGCCAAAGCAATATGCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATATAAAGACAGTGAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGTCAATCAGCAGACAGCAGTGGTACTT
|
SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGT
| null | null | null | null |
GGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
GGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG
|
VFGGGTKLTVL
|
TCCTATGAGCTGACACAGCCACCCTCGGTGTCAGTGTCCCCAGGACAGACGGCCAGGATCACCTGCTCTGGAGAT
|
SYELTQPPSVSVSPGQTARITCSGD
|
GCATTGCCAAAGCAATAT
|
ALPKQY
|
GCTTATTGGTACCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATATAT
|
AYWYQQKPGQAPVLVIY
|
AAAGACAGT
|
KDS
|
GAGAGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAGCTCAGGGACAACAGTCACGTTGACCATCAGTGGAGTCCAGGCAGAAGACGAGGCTGACTATTACTGT
|
ERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYC
|
TTCGGCGGAGGGACCAAGCTGACCGTCCTA
|
FGGGTKLTVL
|
CAATCAGCAGACAGCAGTGGTACTTGGGTG
|
QSADSSGTWV
|
TGTCAATCAGCAGACAGCAGTGGTACTTGGGTGTTC
|
36.0
|
CQSADSSGTWVF
|
12.0
|
447.456
| null |
69.904
|
100S286M247S4N
| null |
386S2N36M211S
|
1.4819999999999999e-127
| null |
5.591e-16
|
100.0
| null |
100.0
|
101
|
386
|
1
|
286
| null | null | null | null |
387
|
422
|
3
|
38
|
101
|
175
|
176
|
193
|
194
|
244
|
245
|
253
|
254
|
361
|
392.0
|
421.0
|
362.0
|
391.0
| null |
0
| null | null |
GTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'S', '2 ': 'Y', '3 ': 'E', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'V', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'T', '19 ': 'A', '20 ': 'R', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'S', '25 ': 'G', '26 ': 'D'}, 'cdrl1': {'27 ': 'A', '28 ': 'L', '29 ': 'P', '36 ': 'K', '37 ': 'Q', '38 ': 'Y'}, 'fwl2': {'39 ': 'A', '40 ': 'Y', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'V', '52 ': 'L', '53 ': 'V', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'K', '57 ': 'D', '65 ': 'S'}, 'fwl3': {'66 ': 'E', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'E', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'S', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'T', '87 ': 'V', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'G', '94 ': 'V', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'S', '107 ': 'A', '108 ': 'D', '109 ': 'S', '113 ': 'S', '114 ': 'G', '115 ': 'T', '116 ': 'W', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'G', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'L', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGTAGGTAGTGAAT-1_contig_1
|
TGGGGGCTTTCTGAGAGTCATGGATCTCATGTGCAAGAAAATGAAGCACCTGTGGTTCTTCCTCCTGCTGGTGGCGGCTCCCAGATGGGTCCTGTCCCAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGGTGCGGGGGAGATTCGGTTGTAGTAGTACCAGCTGCGCTTAGCTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-39*01
|
IGHD2-2*01
|
IGHJ5*02
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGGTGCGGGGGAGATTCGGTTGTAGTAGTACCAGCTGCGCTTAGCTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGNNNNNNNNNNNNNNNNNTTGTAGTAGTACCAGCTGCNNNNNNCTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARCGGDSVVVVPAALSWFDPWGQGTLVTVSS
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAXXXXXXXVVVPAAXXWFDPWGQGTLVTVSS
|
1
|
296
|
314.0
|
332.0
|
339
|
385
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAG
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCA
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAG
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCA
|
TTGTAGTAGTACCAGCTGC
|
VVVPAA
|
TTGTAGTAGTACCAGCTGC
|
VVVPAA
|
CTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WFDPWGQGTLVTVSS
|
CTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
WFDPWGQGTLVTVSS
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QLQLQESGPGLVKPSETLSLTCTVS
|
GGTGGCTCCATCAGCAGTAGTAGTTACTAC
|
GGSISSSSYY
|
TGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGT
|
WGWIRQPPGKGLEWIGS
|
ATCTATTATAGTGGGAGCACC
|
IYYSGST
|
TACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGT
|
YYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGGTGCGGGGGAGATTCGGTTGTAGTAGTACCAGCTGCGCTTAGCTGGTTCGACCCC
|
ARCGGDSVVVVPAALSWFDP
|
TGTGCGAGGTGCGGGGGAGATTCGGTTGTAGTAGTACCAGCTGCGCTTAGCTGGTTCGACCCCTGG
|
66.0
|
CARCGGDSVVVVPAALSWFDPW
|
22.0
|
463.037
|
37.218
|
91.054
|
97S296M160S3N
|
410S6N19M124S6N
|
435S4N47M71S
|
2.637e-132
|
1.548e-06
|
2.0939999999999997e-22
|
100.0
|
100.0
|
100.0
|
98
|
393
|
1
|
296
|
411.0
|
429.0
|
7.0
|
25.0
|
436
|
482
|
5
|
51
|
98
|
172
|
173
|
202
|
203
|
253
|
254
|
274
|
275
|
388
|
449.0
|
481.0
|
389.0
|
448.0
|
GTGCGGGGGAGATTCGG
|
17
|
GCTTAG
|
6.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'L', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'E', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '34 ': 'S', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'G', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'S'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'Y', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'C', '108 ': 'G', '109 ': 'G', '110 ': 'D', '111 ': 'S', '111A': 'V', '111B': 'V', '111C': 'V', '112D': 'V', '112C': 'P', '112B': 'A', '112A': 'A', '112 ': 'L', '113 ': 'S', '114 ': 'W', '115 ': 'F', '116 ': 'D', '117 ': 'P'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGTAGGTAGTGAAT-1_contig_2
|
GCTCTGCTTCAGCTGTGGGCACAAGAGGCAGCACTCAGGACAATCTCCAGCATGGCCTGGTCTCCTCTCCTCCTCACTCTCCTCGCTCACTGCACAGGGTCCTGGGCCCAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAGGTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTA
|
L
|
F
|
T
|
F
|
T
|
F
|
T
|
IGLV1-40*01
| null |
IGLJ1*01
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLYVFGTGTKVTVL
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLYVFGTGTKVTVL
|
1
|
290
| null | null |
291
|
328
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCT
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSL
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCT
|
QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSL
| null | null | null | null |
TTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
YVFGTGTKVTVL
|
TTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG
|
YVFGTGTKVTVL
|
CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGC
|
QSVLTQPPSVSGAPGQRVTISCTGS
|
AGCTCCAACATCGGGGCAGGTTATGAT
|
SSNIGAGYD
|
GTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTAT
|
VHWYQQLPGTAPKLLIY
|
GGTAACAGC
|
GNS
|
AATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGC
|
NRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYC
|
TTCGGAACTGGGACCAAGGTCACCGTCCTA
|
FGTGTKVTVL
|
CAGTCCTATGACAGCAGCCTTTATGTC
|
QSYDSSLYV
|
TGCCAGTCCTATGACAGCAGCCTTTATGTCTTC
|
33.0
|
CQSYDSSLYVF
|
11.0
|
453.689
| null |
73.749
|
108S290M249S9N
| null |
398S38M211S
|
2.016e-129
| null |
3.977e-17
|
100.0
| null |
100.0
|
109
|
398
|
1
|
290
| null | null | null | null |
399
|
436
|
1
|
38
|
109
|
183
|
184
|
210
|
211
|
261
|
262
|
270
|
271
|
378
|
406.0
|
435.0
|
379.0
|
405.0
| null |
0
| null | null |
GTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGCCTGGAAGGCAGATGGCAGCCCCGTCAAGGCGGGAGTGGAGACCACCAAACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTA
|
Bulk
|
1
|
{'fwl1': {'1 ': 'Q', '2 ': 'S', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'P', '8 ': 'P', '9 ': 'S', '11 ': 'V', '12 ': 'S', '13 ': 'G', '14 ': 'A', '15 ': 'P', '16 ': 'G', '17 ': 'Q', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'S', '23 ': 'C', '24 ': 'T', '25 ': 'G', '26 ': 'S'}, 'cdrl1': {'27 ': 'S', '28 ': 'S', '29 ': 'N', '30 ': 'I', '31 ': 'G', '35 ': 'A', '36 ': 'G', '37 ': 'Y', '38 ': 'D'}, 'fwl2': {'39 ': 'V', '40 ': 'H', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'L', '46 ': 'P', '47 ': 'G', '48 ': 'T', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrl2': {'56 ': 'G', '57 ': 'N', '65 ': 'S'}, 'fwl3': {'66 ': 'N', '67 ': 'R', '68 ': 'P', '69 ': 'S', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'D', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'K', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'S', '87 ': 'A', '88 ': 'S', '89 ': 'L', '90 ': 'A', '91 ': 'I', '92 ': 'T', '93 ': 'G', '94 ': 'L', '95 ': 'Q', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'E', '100 ': 'A', '101 ': 'D', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrl3': {'105 ': 'Q', '106 ': 'S', '107 ': 'Y', '108 ': 'D', '109 ': 'S', '114 ': 'S', '115 ': 'L', '116 ': 'Y', '117 ': 'V'}, 'fwl4': {'118 ': 'F', '119 ': 'G', '120 ': 'T', '121 ': 'G', '122 ': 'T', '123 ': 'K', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'L'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGTAGGTCAACTGT-1_contig_2
|
GGGGATGCTTTCTGAGAGTCATGGATCTCATGTGCAAGAAAATGAAGCACCTGTGGTTCTTCCTCCTGCTGGTGGCGGCTCCCAGATGGGTCCTGTCCCAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACTGAAAGGAGAGTATTGTAGTAGTACCAGCTGCTATACCCCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV4-39*01
|
IGHD2-2*02
|
IGHJ6*02
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACTGAAAGGAGAGTATTGTAGTAGTACCAGCTGCTATACCCCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACNNNNNNNNNNNTATTGTAGTAGTACCAGCTGCTATACCNNCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARLKGEYCSSTSCYTPYYYYGMDVWGQGTTVTVSS
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARXXXXYCSSTSCYTXYYYYGMDVWGQGTTVTVSS
|
1
|
298
|
310.0
|
336.0
|
339
|
396
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGAC
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGAC
|
QLQLQESGPGLVKPSETLSLTCTVSGGSISSSSYYWGWIRQPPGKGLEWIGSIYYSGSTYYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAR
|
TATTGTAGTAGTACCAGCTGCTATACC
|
YCSSTSCYT
|
TATTGTAGTAGTACCAGCTGCTATACC
|
YCSSTSCYT
|
CTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
CTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
YYYYGMDVWGQGTTVTVSS
|
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCT
|
QLQLQESGPGLVKPSETLSLTCTVS
|
GGTGGCTCCATCAGCAGTAGTAGTTACTAC
|
GGSISSSSYY
|
TGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGT
|
WGWIRQPPGKGLEWIGS
|
ATCTATTATAGTGGGAGCACC
|
IYYSGST
|
TACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGT
|
YYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYC
|
TGGGGCCAAGGGACCACGGTCACCGTCTCCTCA
|
WGQGTTVTVSS
|
GCGAGACTGAAAGGAGAGTATTGTAGTAGTACCAGCTGCTATACCCCCTACTACTACTACGGTATGGACGTC
|
ARLKGEYCSSTSCYTPYYYYGMDV
|
TGTGCGAGACTGAAAGGAGAGTATTGTAGTAGTACCAGCTGCTATACCCCCTACTACTACTACGGTATGGACGTCTGG
|
78.0
|
CARLKGEYCSSTSCYTPYYYYGMDVW
|
26.0
|
466.153
|
52.6
|
112.203
|
98S298M170S1N
|
407S4N27M132S
|
436S4N58M72S
|
3.117e-133
|
3.714e-11
|
9.218999999999999e-29
|
100.0
|
100.0
|
100.0
|
99
|
396
|
1
|
298
|
408.0
|
434.0
|
5.0
|
31.0
|
437
|
494
|
5
|
62
|
99
|
173
|
174
|
203
|
204
|
254
|
255
|
275
|
276
|
389
|
462.0
|
494.0
|
390.0
|
461.0
|
TGAAAGGAGAG
|
11
|
CC
|
2.0
|
GGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'Q', '2 ': 'L', '3 ': 'Q', '4 ': 'L', '5 ': 'Q', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'P', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'S', '17 ': 'E', '18 ': 'T', '19 ': 'L', '20 ': 'S', '21 ': 'L', '22 ': 'T', '23 ': 'C', '24 ': 'T', '25 ': 'V', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'G', '29 ': 'S', '30 ': 'I', '31 ': 'S', '34 ': 'S', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'Y'}, 'fwh2': {'39 ': 'W', '40 ': 'G', '41 ': 'W', '42 ': 'I', '43 ': 'R', '44 ': 'Q', '45 ': 'P', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'I', '54 ': 'G', '55 ': 'S'}, 'cdrh2': {'56 ': 'I', '57 ': 'Y', '58 ': 'Y', '59 ': 'S', '63 ': 'G', '64 ': 'S', '65 ': 'T'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'N', '69 ': 'P', '70 ': 'S', '71 ': 'L', '72 ': 'K', '74 ': 'S', '75 ': 'R', '76 ': 'V', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'V', '81 ': 'D', '82 ': 'T', '83 ': 'S', '84 ': 'K', '85 ': 'N', '86 ': 'Q', '87 ': 'F', '88 ': 'S', '89 ': 'L', '90 ': 'K', '91 ': 'L', '92 ': 'S', '93 ': 'S', '94 ': 'V', '95 ': 'T', '96 ': 'A', '97 ': 'A', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'R', '107 ': 'L', '108 ': 'K', '109 ': 'G', '110 ': 'E', '111 ': 'Y', '111A': 'C', '111B': 'S', '111C': 'S', '111D': 'T', '111E': 'S', '112F': 'C', '112E': 'Y', '112D': 'T', '112C': 'P', '112B': 'Y', '112A': 'Y', '112 ': 'Y', '113 ': 'Y', '114 ': 'G', '115 ': 'M', '116 ': 'D', '117 ': 'V'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'T', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGTAGGTCAACTGT-1_contig_1
|
GGGGAGGAACTGCTCAGTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACCGGAGAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCACCGGGGGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV3-11*01
| null |
IGKJ5*01
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCACCGGGGGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCNNNNNNNGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWHRGITFGQGTRLEIK
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWXXXITFGQGTRLEIK
|
1
|
283
| null | null |
291
|
328
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNW
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGC
|
EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNW
| null | null | null | null |
GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGT
|
EIVLTQSPATLSLSPGERATLSCRAS
|
CAGAGTGTTAGCAGCTAC
|
QSVSSY
|
TTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTAT
|
LAWYQQKPGQAPRLLIY
|
GATGCATCC
|
DAS
|
AACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGT
|
NRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYC
|
TTCGGCCAAGGGACACGACTGGAGATTAAA
|
FGQGTRLEIK
|
CAGCAGCGTAGCAACTGGCACCGGGGGATCACC
|
QQRSNWHRGIT
|
TGTCAGCAGCGTAGCAACTGGCACCGGGGGATCACCTTC
|
39.0
|
CQQRSNWHRGITF
|
13.0
|
442.782
| null |
73.749
|
96S283M181S4N
| null |
386S38M136S
|
3.345e-126
| null |
3.433e-17
|
100.0
| null |
100.0
|
97
|
379
|
1
|
283
| null | null | null | null |
387
|
424
|
1
|
38
|
97
|
174
|
175
|
192
|
193
|
243
|
244
|
252
|
253
|
360
|
394.0
|
423.0
|
361.0
|
393.0
|
ACCGGGG
|
7
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'E', '2 ': 'I', '3 ': 'V', '4 ': 'L', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'A', '10 ': 'T', '11 ': 'L', '12 ': 'S', '13 ': 'L', '14 ': 'S', '15 ': 'P', '16 ': 'G', '17 ': 'E', '18 ': 'R', '19 ': 'A', '20 ': 'T', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'R', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'S', '29 ': 'V', '36 ': 'S', '37 ': 'S', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'A', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'Q', '49 ': 'A', '50 ': 'P', '51 ': 'R', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'R', '68 ': 'A', '69 ': 'T', '70 ': 'G', '71 ': 'I', '72 ': 'P', '74 ': 'A', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'L', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'E', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'F', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'R', '108 ': 'S', '109 ': 'N', '110 ': 'W', '113 ': 'H', '114 ': 'R', '115 ': 'G', '116 ': 'I', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'R', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
1279049
|
https://doi.org/10.1038/s41586-022-05371-z
|
Jaffe et al., 2022
|
human
|
35
|
PBMC
|
Naive-B-Cells
| null |
SARS-COV-2
|
Donor-2
|
no
| 8,954
|
All
|
Paired
|
1279049_1_Paired_All.csv.gz
|
AAAGTAGGTCGAAAGC-1_contig_1
|
AGCTCTGAGAGAGGAGCCTTAGCCCTGGATTCCAAGGCCTATCCACTTGGTGATCAGCACTGAGCACCGAGGATTCACCATGGAACTGGGGCTCCGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGCGGGTGGGCAGCAGCTGGAACCGACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
H
|
F
|
T
|
F
|
T
|
F
|
T
|
IGHV3-21*01
|
IGHD6-13*01
|
IGHJ4*02
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGCGGGTGGGCAGCAGCTGGAACCGACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGNNNNNNNGCAGCAGCTGGNNNNNACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCASGWAAAGTDFDYWGQGTLVTVSS
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAXXXAAAGXXFDYWGQGTLVTVSS
|
1
|
293
|
301.0
|
311.0
|
317
|
361
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCA
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAG
|
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCA
|
GCAGCAGCTGG
|
AAAG
|
GCAGCAGCTGG
|
AAAG
|
ACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
ACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
FDYWGQGTLVTVSS
|
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCT
|
EVQLVESGGGLVKPGGSLRLSCAAS
|
GGATTCACCTTCAGTAGCTATAGC
|
GFTFSSYS
|
ATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCC
|
MNWVRQAPGKGLEWVSS
|
ATTAGTAGTAGTAGTAGTTACATA
|
ISSSSSYI
|
TACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGT
|
YYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC
|
TGGGGCCAGGGAACCCTGGTCACCGTCTCCTCA
|
WGQGTLVTVSS
|
GCGAGCGGGTGGGCAGCAGCTGGAACCGACTTTGACTAC
|
ASGWAAAGTDFDY
|
TGTGCGAGCGGGTGGGCAGCAGCTGGAACCGACTTTGACTACTGG
|
45.0
|
CASGWAAAGTDFDYW
|
15.0
|
458.363
|
21.837
|
87.208
|
136S293M139S3N
|
436S7N11M121S3N
|
452S3N45M71S
|
6.926e-131
|
0.06793
|
3.0940000000000002e-21
|
100.0
|
100.0
|
100.0
|
137
|
429
|
1
|
293
|
437.0
|
447.0
|
8.0
|
18.0
|
453
|
497
|
4
|
48
|
137
|
211
|
212
|
235
|
236
|
286
|
287
|
310
|
311
|
424
|
464.0
|
496.0
|
425.0
|
463.0
|
CGGGTGG
|
7
|
AACCG
|
5.0
|
GGAGTGCATCCGCCCCAACCCTTTTCCCCCTCGTCTCCTGTGAGAATTCCCCGTCGGATACGAGCAGCGTG
|
IGHM
|
1
|
{'fwh1': {'1 ': 'E', '2 ': 'V', '3 ': 'Q', '4 ': 'L', '5 ': 'V', '6 ': 'E', '7 ': 'S', '8 ': 'G', '9 ': 'G', '11 ': 'G', '12 ': 'L', '13 ': 'V', '14 ': 'K', '15 ': 'P', '16 ': 'G', '17 ': 'G', '18 ': 'S', '19 ': 'L', '20 ': 'R', '21 ': 'L', '22 ': 'S', '23 ': 'C', '24 ': 'A', '25 ': 'A', '26 ': 'S'}, 'cdrh1': {'27 ': 'G', '28 ': 'F', '29 ': 'T', '30 ': 'F', '35 ': 'S', '36 ': 'S', '37 ': 'Y', '38 ': 'S'}, 'fwh2': {'39 ': 'M', '40 ': 'N', '41 ': 'W', '42 ': 'V', '43 ': 'R', '44 ': 'Q', '45 ': 'A', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'G', '50 ': 'L', '51 ': 'E', '52 ': 'W', '53 ': 'V', '54 ': 'S', '55 ': 'S'}, 'cdrh2': {'56 ': 'I', '57 ': 'S', '58 ': 'S', '59 ': 'S', '62 ': 'S', '63 ': 'S', '64 ': 'Y', '65 ': 'I'}, 'fwh3': {'66 ': 'Y', '67 ': 'Y', '68 ': 'A', '69 ': 'D', '70 ': 'S', '71 ': 'V', '72 ': 'K', '74 ': 'G', '75 ': 'R', '76 ': 'F', '77 ': 'T', '78 ': 'I', '79 ': 'S', '80 ': 'R', '81 ': 'D', '82 ': 'N', '83 ': 'A', '84 ': 'K', '85 ': 'N', '86 ': 'S', '87 ': 'L', '88 ': 'Y', '89 ': 'L', '90 ': 'Q', '91 ': 'M', '92 ': 'N', '93 ': 'S', '94 ': 'L', '95 ': 'R', '96 ': 'A', '97 ': 'E', '98 ': 'D', '99 ': 'T', '100 ': 'A', '101 ': 'V', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrh3': {'105 ': 'A', '106 ': 'S', '107 ': 'G', '108 ': 'W', '109 ': 'A', '110 ': 'A', '111 ': 'A', '112 ': 'G', '113 ': 'T', '114 ': 'D', '115 ': 'F', '116 ': 'D', '117 ': 'Y'}, 'fwh4': {'118 ': 'W', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'L', '124 ': 'V', '125 ': 'T', '126 ': 'V', '127 ': 'S', '128 ': 'S'}}
|
|Deletions: 10, 73||||
|
AAAGTAGGTCGAAAGC-1_contig_2
|
AGGAGTCAGTCCCAACCAGGACACAGCATGGACATGAGGGTCCCTGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCTCTCAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCTTTCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
K
|
F
|
T
|
F
|
T
|
F
|
T
|
IGKV1-33*01
| null |
IGKJ5*01
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCTTTCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCNNNNGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLLSITFGQGTRLEIK
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLXXITFGQGTRLEIK
|
1
|
283
| null | null |
288
|
325
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNL
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCC
|
DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNL
| null | null | null | null |
GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC
|
ITFGQGTRLEIK
|
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGT
|
DIQMTQSPSSLSASVGDRVTITCQAS
|
CAGGACATTAGCAACTAT
|
QDISNY
|
TTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTAC
|
LNWYQQKPGKAPKLLIY
|
GATGCATCC
|
DAS
|
AATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGT
|
NLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYC
|
TTCGGCCAAGGGACACGACTGGAGATTAAA
|
FGQGTRLEIK
|
CAACAGTATGATAATCTCCTTTCGATCACC
|
QQYDNLLSIT
|
TGTCAACAGTATGATAATCTCCTTTCGATCACCTTC
|
36.0
|
CQQYDNLLSITF
|
12.0
|
442.782
| null |
73.749
|
93S283M178S4N
| null |
380S38M136S
|
3.307e-126
| null |
3.396e-17
|
100.0
| null |
100.0
|
94
|
376
|
1
|
283
| null | null | null | null |
381
|
418
|
1
|
38
|
94
|
171
|
172
|
189
|
190
|
240
|
241
|
249
|
250
|
357
|
388.0
|
417.0
|
358.0
|
387.0
|
TTTC
|
4
| null | null |
GAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC
|
Bulk
|
1
|
{'fwk1': {'1 ': 'D', '2 ': 'I', '3 ': 'Q', '4 ': 'M', '5 ': 'T', '6 ': 'Q', '7 ': 'S', '8 ': 'P', '9 ': 'S', '10 ': 'S', '11 ': 'L', '12 ': 'S', '13 ': 'A', '14 ': 'S', '15 ': 'V', '16 ': 'G', '17 ': 'D', '18 ': 'R', '19 ': 'V', '20 ': 'T', '21 ': 'I', '22 ': 'T', '23 ': 'C', '24 ': 'Q', '25 ': 'A', '26 ': 'S'}, 'cdrk1': {'27 ': 'Q', '28 ': 'D', '29 ': 'I', '36 ': 'S', '37 ': 'N', '38 ': 'Y'}, 'fwk2': {'39 ': 'L', '40 ': 'N', '41 ': 'W', '42 ': 'Y', '43 ': 'Q', '44 ': 'Q', '45 ': 'K', '46 ': 'P', '47 ': 'G', '48 ': 'K', '49 ': 'A', '50 ': 'P', '51 ': 'K', '52 ': 'L', '53 ': 'L', '54 ': 'I', '55 ': 'Y'}, 'cdrk2': {'56 ': 'D', '57 ': 'A', '65 ': 'S'}, 'fwk3': {'66 ': 'N', '67 ': 'L', '68 ': 'E', '69 ': 'T', '70 ': 'G', '71 ': 'V', '72 ': 'P', '74 ': 'S', '75 ': 'R', '76 ': 'F', '77 ': 'S', '78 ': 'G', '79 ': 'S', '80 ': 'G', '83 ': 'S', '84 ': 'G', '85 ': 'T', '86 ': 'D', '87 ': 'F', '88 ': 'T', '89 ': 'F', '90 ': 'T', '91 ': 'I', '92 ': 'S', '93 ': 'S', '94 ': 'L', '95 ': 'Q', '96 ': 'P', '97 ': 'E', '98 ': 'D', '99 ': 'I', '100 ': 'A', '101 ': 'T', '102 ': 'Y', '103 ': 'Y', '104 ': 'C'}, 'cdrk3': {'105 ': 'Q', '106 ': 'Q', '107 ': 'Y', '108 ': 'D', '109 ': 'N', '113 ': 'L', '114 ': 'L', '115 ': 'S', '116 ': 'I', '117 ': 'T'}, 'fwk4': {'118 ': 'F', '119 ': 'G', '120 ': 'Q', '121 ': 'G', '122 ': 'T', '123 ': 'R', '124 ': 'L', '125 ': 'E', '126 ': 'I', '127 ': 'K'}}
|
|||||
|
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