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"str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00026.mds", "bytes": 32403873, "hashes": {}}, "samples": 567, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00026.mds.zstd", "bytes": 9214342, "hashes": {}}}], "version": 2} \ No newline at end of file diff --git a/arxiv/0-3/tokenize_output.log b/arxiv/0-3/tokenize_output.log new file mode 100644 index 0000000000000000000000000000000000000000..696a8c6bc01237149caaa14bf704acb29aed7f3d --- /dev/null +++ b/arxiv/0-3/tokenize_output.log @@ -0,0 +1,94 @@ +Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes). +Special tokens have been added in the vocabulary, make sure the associated word embeddings are fine-tuned or trained. +Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/0-3... +Using tokenizer model bclavie/olmo_bert_template... +Using 1 processes for tokenization, with 1000 items per process. + Processing samples: 0%| | 0/30559 [00:00 + sample_dataset_from_config(args) + File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 63, in sample_dataset_from_config + with MDSWriter(out=output_dir, columns=MDS_COLS_PRE_TOKENIZED, compression='zstd') as mds_writer: + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 354, in __exit__ + self.finish() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 298, in finish + self.flush_shard() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 429, in flush_shard + raw_data_info, zip_data_info = self._process_file(raw_data, raw_data_basename, + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 212, in _process_file + zip_data = compress(self.compression, raw_data) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/compression.py", line 240, in compress + return obj.compress(data) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/compression.py", line 153, in compress + return zstd.compress(data, self.level) +KeyboardInterrupt +Exception ignored in atexit callback: +Traceback (most recent call last): + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/torch/_dynamo/utils.py", line 320, in dump_compile_times + log.info(compile_times(repr="str", aggregate=True)) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/torch/_dynamo/utils.py", line 307, in compile_times + out += tabulate(rows, headers=("Function", "Runtimes (s)")) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/torch/_dynamo/utils.py", line 121, in tabulate + import tabulate + File "", line 1027, in _find_and_load + File "", line 1006, in _find_and_load_unlocked + File "", line 688, in _load_unlocked + File "", line 879, in exec_module + File "", line 1012, in get_code + File "", line 672, in _compile_bytecode +KeyboardInterrupt: +Exception ignored in atexit callback: > +Traceback (most recent call last): + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/weakref.py", line 667, in _exitfunc + f() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/weakref.py", line 591, in __call__ + return info.func(*info.args, **(info.kwargs or {})) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/urllib3/connectionpool.py", line 1180, in _close_pool_connections + conn.close() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/urllib3/connection.py", line 275, in close + super().close() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/http/client.py", line 961, in close + sock.close() # close it manually... there may be other refs + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/socket.py", line 502, in close + self._real_close() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/ssl.py", line 1366, in _real_close + super()._real_close() +KeyboardInterrupt: + Processing samples: 43%|████▎ | 13000/30559 [18:07<24:28, 11.96it/s] diff --git a/arxiv/0-5-tokenized/index.json b/arxiv/0-5-tokenized/index.json new file mode 100644 index 0000000000000000000000000000000000000000..e9b86c23293b5b1456ffa7dbb399735a01112144 --- /dev/null +++ b/arxiv/0-5-tokenized/index.json 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100644 index 0000000000000000000000000000000000000000..6603730d8b8f025adbfe38b8ab00b82f99ece100 --- /dev/null +++ b/arxiv/1-1/tokenize_output.log @@ -0,0 +1,68 @@ +Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes). +Special tokens have been added in the vocabulary, make sure the associated word embeddings are fine-tuned or trained. +Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/1-1... +Using tokenizer model bclavie/olmo_bert_template... +Using 1 processes for tokenization, with 1000 items per process. + Processing samples: 0%| | 0/30648 [00:00 + sample_dataset_from_config(args) + File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 63, in sample_dataset_from_config + with MDSWriter(out=output_dir, columns=MDS_COLS_PRE_TOKENIZED, compression='zstd') as mds_writer: + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 354, in __exit__ + self.finish() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 298, in finish + self.flush_shard() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 429, in flush_shard + raw_data_info, zip_data_info = self._process_file(raw_data, raw_data_basename, + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 222, in _process_file + out.write(data) +KeyboardInterrupt +Exception ignored in atexit callback: +Traceback (most recent call last): + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/util.py", line 357, in _exit_function + p.join() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/process.py", line 149, in join + res = self._popen.wait(timeout) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 43, in wait + return self.poll(os.WNOHANG if timeout == 0.0 else 0) + File 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"zip_data": {"basename": "shard.00025.mds.zstd", "bytes": 19320547, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00026.mds", "bytes": 861650, "hashes": {}}, "samples": 14, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00026.mds.zstd", "bytes": 237636, "hashes": {}}}], "version": 2} \ No newline at end of file diff --git a/arxiv/2-4/tokenize_output.log b/arxiv/2-4/tokenize_output.log new file mode 100644 index 0000000000000000000000000000000000000000..3fe18d23d928e13ad25e3df507dc483d53d5a12a --- /dev/null +++ b/arxiv/2-4/tokenize_output.log @@ -0,0 +1,68 @@ +Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes). +Special tokens have been added in the vocabulary, make sure the associated word embeddings are fine-tuned or trained. +Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/2-4... +Using tokenizer model bclavie/olmo_bert_template... +Using 1 processes for tokenization, with 1000 items per process. + Processing samples: 0%| | 0/30095 [00:00 + sample_dataset_from_config(args) + File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 63, in sample_dataset_from_config + with MDSWriter(out=output_dir, columns=MDS_COLS_PRE_TOKENIZED, compression='zstd') as mds_writer: + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 354, in __exit__ + self.finish() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 298, in finish + self.flush_shard() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 429, in flush_shard + raw_data_info, zip_data_info = self._process_file(raw_data, raw_data_basename, + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 222, in _process_file + out.write(data) +KeyboardInterrupt +Exception ignored in atexit callback: +Traceback (most recent call last): + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/util.py", line 357, in _exit_function + p.join() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/process.py", line 149, in join + res = self._popen.wait(timeout) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 43, in wait + return self.poll(os.WNOHANG if timeout == 0.0 else 0) + File 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"zip_data": {"basename": "shard.00025.mds.zstd", "bytes": 19031200, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00026.mds", "bytes": 36855190, "hashes": {}}, "samples": 619, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00026.mds.zstd", "bytes": 10503206, "hashes": {}}}], "version": 2} \ No newline at end of file diff --git a/arxiv/2-8/tokenize_output.log b/arxiv/2-8/tokenize_output.log new file mode 100644 index 0000000000000000000000000000000000000000..5d5c0c7a237153669af45d0edfc8dae93f0384a6 --- /dev/null +++ b/arxiv/2-8/tokenize_output.log @@ -0,0 +1,58 @@ +Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes). +Special tokens have been added in the vocabulary, make sure the associated word embeddings are fine-tuned or trained. +Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/2-8... +Using tokenizer model bclavie/olmo_bert_template... +Using 1 processes for tokenization, with 1000 items per process. + Processing samples: 0%| | 0/31212 [00:00 + sample_dataset_from_config(args) + File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 63, in sample_dataset_from_config + with MDSWriter(out=output_dir, columns=MDS_COLS_PRE_TOKENIZED, compression='zstd') as mds_writer: + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 354, in __exit__ + self.finish() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 298, in finish + self.flush_shard() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 428, in flush_shard + raw_data = self.encode_joint_shard() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/mds/writer.py", line 143, in encode_joint_shard + sample_data = b''.join(self.new_samples) +KeyboardInterrupt + Processing samples: 42%|████▏ | 13000/31212 [18:04<25:19, 11.99it/s] diff --git a/arxiv/3-2/index.json b/arxiv/3-2/index.json new file mode 100644 index 0000000000000000000000000000000000000000..5a8ac44d3b03a8741b9cae0bbf52dedd71c192d2 --- /dev/null +++ b/arxiv/3-2/index.json @@ -0,0 +1 @@ +{"shards": [{"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00000.mds", "bytes": 67062121, "hashes": {}}, "samples": 1202, "size_limit": 67108864, 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0000000000000000000000000000000000000000..551df9aefb2dfa2d160822a3a4e6bc99b30a12af --- /dev/null +++ b/arxiv/3-2/tokenize_output.log @@ -0,0 +1,66 @@ +Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes). +Special tokens have been added in the vocabulary, make sure the associated word embeddings are fine-tuned or trained. +Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/3-2... +Using tokenizer model bclavie/olmo_bert_template... +Using 1 processes for tokenization, with 1000 items per process. + Processing samples: 0%| | 0/30587 [00:00 + sample_dataset_from_config(args) + File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 63, in sample_dataset_from_config + with MDSWriter(out=output_dir, columns=MDS_COLS_PRE_TOKENIZED, compression='zstd') as mds_writer: + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 354, in __exit__ + self.finish() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 300, in finish + self._write_index() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 289, in _write_index + sleep(1) +KeyboardInterrupt +Exception ignored in atexit callback: +Traceback (most recent call last): + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/util.py", line 357, in _exit_function + p.join() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/process.py", line 149, in join + res = self._popen.wait(timeout) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 43, in wait + return self.poll(os.WNOHANG if timeout == 0.0 else 0) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 27, in poll + pid, sts = os.waitpid(self.pid, flag) +KeyboardInterrupt: diff --git a/arxiv/3-5/shard.00001.mds b/arxiv/3-5/shard.00001.mds new file mode 100644 index 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