osbm commited on
Commit
a267f75
·
1 Parent(s): 08ece3a

Update prostate158.py

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Files changed (1) hide show
  1. prostate158.py +2 -3
prostate158.py CHANGED
@@ -87,7 +87,6 @@ class Prostate158Dataset(datasets.GeneratorBasedBuilder):
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  if self.config.name == "2d":
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  print(os.listdir(downloaded_files))
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  df = pd.read_csv(downloaded_files / f"{split}.csv")
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- images_folder = downloaded_files / split
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  yield_index = 0
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  for idx, row in df.iterrows():
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  print(row)
@@ -95,7 +94,7 @@ class Prostate158Dataset(datasets.GeneratorBasedBuilder):
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  # we will return t2 adc dwi t2_anatomy_reader1 adc_tumor_reader1
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  images_list = ["t2", "adc", "dwi", "t2_anatomy_reader1", "adc_tumor_reader1"]
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- images_data = {image_name: nib.load(images_folder / row[image_name]) for image_name in images_list}
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  print("example_shape", images_data["t2"].shape)
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  for i in range(images_data["t2"].shape[2]):
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  print(i)
@@ -103,7 +102,7 @@ class Prostate158Dataset(datasets.GeneratorBasedBuilder):
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  elif self.config.name == "3d":
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  df = pd.read_csv(downloaded_files / f"{split}.csv")
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- images_folder = downloaded_files / split
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  if self.config.name == "2d":
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  print(os.listdir(downloaded_files))
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  df = pd.read_csv(downloaded_files / f"{split}.csv")
 
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  yield_index = 0
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  for idx, row in df.iterrows():
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  print(row)
 
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  # we will return t2 adc dwi t2_anatomy_reader1 adc_tumor_reader1
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  images_list = ["t2", "adc", "dwi", "t2_anatomy_reader1", "adc_tumor_reader1"]
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+ images_data = {image_name: nib.load(downloaded_files / row[image_name]) for image_name in images_list}
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  print("example_shape", images_data["t2"].shape)
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  for i in range(images_data["t2"].shape[2]):
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  print(i)
 
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  elif self.config.name == "3d":
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  df = pd.read_csv(downloaded_files / f"{split}.csv")
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+
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