Datasets:
File size: 10,022 Bytes
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from pathlib import Path
import shutil
import random
from datetime import datetime
try:
import rasterio
from rasterio.windows import from_bounds
except ImportError:
raise ImportError("This script requires rasterio. Install it with: pip install rasterio")
areas = {'ATA_MV', 'BRA_SP', 'CHN_WS', 'ESP_EH', 'FIN_LM', 'GER_BN', 'IDN_SV',
'KAZ_AC', 'KSA_WA', 'NAM_HF', 'NZL_KP', 'PHL_TA', 'USA_GC'}
data_path = Path("/home/sabrina/Documents/Tese/05_Dataset/MatchGeo-DEM-v1/data/")
tiny_path = Path("/home/sabrina/Documents/Tese/05_Dataset/MatchGeo-DEM-v1-tiny/data/")
# Configuration
SEED = 42
N = 5 # <-- n x n tiles contiguous subset
TILE_SIZE = 333 # Expected tile dimension in pixels
INCLUDE_ANNOTATIONS = True
random.seed(SEED)
def build_tile_grid(tiles_src):
"""
Reads all tiles and builds a 2D grid based on their top-left geographic corners.
Returns (grid, n_rows, n_cols) where grid[r][c] is a Path or None.
"""
tile_info = []
for tile_path in tiles_src.iterdir():
if tile_path.suffix != '.tif':
continue
try:
with rasterio.open(tile_path) as src:
if src.width != TILE_SIZE or src.height != TILE_SIZE:
print(f" ⚠️ {tile_path.name} is {src.width}x{src.height}, "
f"expected {TILE_SIZE}x{TILE_SIZE}")
# Top-left corner in geo coordinates
x, y = src.transform * (0, 0)
tile_info.append((y, x, tile_path))
except Exception as e:
print(f" ⚠️ Error reading {tile_path.name}: {e}")
continue
if not tile_info:
return None, 0, 0
# Pixel size from first tile to set clustering tolerance
with rasterio.open(tile_info[0][2]) as src:
pixel_size = max(abs(src.transform.a), abs(src.transform.e))
# Tolerance: half the expected geo-distance between adjacent tile origins
tol = TILE_SIZE * pixel_size * 0.5
ys = [t[0] for t in tile_info]
xs = [t[1] for t in tile_info]
# Unique Y coordinates = rows (top to bottom, descending)
unique_ys = []
for y in sorted(ys, reverse=True):
if not unique_ys or abs(y - unique_ys[-1]) > tol:
unique_ys.append(y)
# Unique X coordinates = columns (left to right, ascending)
unique_xs = []
for x in sorted(xs):
if not unique_xs or abs(x - unique_xs[-1]) > tol:
unique_xs.append(x)
n_rows = len(unique_ys)
n_cols = len(unique_xs)
# Place each tile in the grid
grid = [[None for _ in range(n_cols)] for _ in range(n_rows)]
for y, x, path in tile_info:
row_idx = min(range(n_rows), key=lambda i: abs(y - unique_ys[i]))
col_idx = min(range(n_cols), key=lambda i: abs(x - unique_xs[i]))
grid[row_idx][col_idx] = path
return grid, n_rows, n_cols
# ------------------------------------------------------------------
print("=" * 80)
print("MatchGeo-DEM Tiny Dataset Generator — n×n Tile Subset")
print(f"Subset size: {N}x{N} tiles ({N*TILE_SIZE}x{N*TILE_SIZE} pixels)")
print(f"Output: {tiny_path}")
print("=" * 80)
total_copied = 0
total_size = 0
for location in sorted(areas):
src_dir = data_path / location
dst_dir = tiny_path / location
if not src_dir.exists():
print(f"\n⚠️ {location}: Source not found, skipping")
continue
dst_dir.mkdir(parents=True, exist_ok=True)
print(f"\n📁 {location}:")
# ------------------------------------------------------------------
# 1. Build tile grid and select random n×n window
# ------------------------------------------------------------------
tiles_src = src_dir / "tiles"
if not tiles_src.exists():
print(f" ⚠️ Tiles directory not found, skipping")
continue
grid, n_rows, n_cols = build_tile_grid(tiles_src)
if grid is None:
print(f" ⚠️ No valid tiles found, skipping")
continue
print(f" 📐 Grid: {n_rows} rows × {n_cols} cols")
# Clamp window to actual grid size
win_h = min(N, n_rows)
win_w = min(N, n_cols)
max_row = n_rows - win_h
max_col = n_cols - win_w
start_row = random.randint(0, max_row) if max_row > 0 else 0
start_col = random.randint(0, max_col) if max_col > 0 else 0
end_row = start_row + win_h
end_col = start_col + win_w
if win_h < N or win_w < N:
print(f" ℹ️ Grid smaller than {N}x{N}; using {win_h}x{win_w} window")
else:
print(f" 🎯 Window: rows {start_row}-{end_row-1}, cols {start_col}-{end_col-1}")
# Collect selected tiles
selected_tiles = []
for r in range(start_row, end_row):
for c in range(start_col, end_col):
if grid[r][c] is not None:
selected_tiles.append(grid[r][c])
if not selected_tiles:
print(f" ⚠️ No tiles in selected window, skipping")
continue
# ------------------------------------------------------------------
# 2. Copy selected tiles
# ------------------------------------------------------------------
tiles_dst = dst_dir / "tiles"
tiles_dst.mkdir(parents=True, exist_ok=True)
selected_names = set()
for tile_path in selected_tiles:
dst = tiles_dst / tile_path.name
shutil.copy2(tile_path, dst)
total_size += tile_path.stat().st_size
selected_names.add(tile_path.stem)
total_copied += len(selected_tiles)
expected = win_h * win_w
if len(selected_tiles) < expected:
print(f" ✅ Tiles: {len(selected_tiles)}/{expected} copied (incomplete grid)")
else:
print(f" ✅ Tiles: {len(selected_tiles)}/{expected} copied")
# ------------------------------------------------------------------
# 3. Crop merged DEM to the exact bounds of selected tiles
# ------------------------------------------------------------------
merged_src = src_dir / f"{location}.tif"
merged_dst = dst_dir / f"{location}.tif"
if merged_src.exists():
# Union of selected tile bounds
left = float('inf')
bottom = float('inf')
right = float('-inf')
top = float('-inf')
for tile_path in selected_tiles:
with rasterio.open(tile_path) as src:
b = src.bounds
left = min(left, b.left)
bottom = min(bottom, b.bottom)
right = max(right, b.right)
top = max(top, b.top)
with rasterio.open(merged_src) as src:
window = from_bounds(left, bottom, right, top, src.transform)
window = window.round_lengths().round_offsets()
profile = src.profile.copy()
profile.update({
'height': int(window.height),
'width': int(window.width),
'transform': src.window_transform(window)
})
with rasterio.open(merged_dst, 'w', **profile) as dst:
dst.write(src.read(window=window))
size = merged_dst.stat().st_size
total_size += size
print(f" ✅ Cropped DEM: {size/1024/1024:.1f} MB "
f"({int(window.width)}x{int(window.height)} px)")
else:
print(f" ⚠️ Merged DEM not found")
# ------------------------------------------------------------------
# 4. Copy metadata (omit geojsons that no longer describe the subset)
# ------------------------------------------------------------------
for meta_file in [f"{location}_metadata.json", f"{location}.qmd"]:
src = src_dir / meta_file
dst = dst_dir / meta_file
if src.exists():
shutil.copy2(src, dst)
print(f" ✅ Metadata copied (extent/tiles geojsons omitted)")
# ------------------------------------------------------------------
# 5. Copy annotations for selected tiles only
# ------------------------------------------------------------------
anno_src = src_dir / "annotations"
anno_dst = dst_dir / "annotations"
if INCLUDE_ANNOTATIONS and anno_src.exists():
anno_dst.mkdir(parents=True, exist_ok=True)
copied_anno = 0
for anno_file in anno_src.iterdir():
if anno_file.suffix == '.json' and anno_file.stem in selected_names:
dst = anno_dst / anno_file.name
shutil.copy2(anno_file, dst)
copied_anno += 1
print(f" ✅ Annotations: {copied_anno} copied")
# ------------------------------------------------------------------
# Summary
# ------------------------------------------------------------------
total_mb = total_size / (1024 * 1024)
total_gb = total_size / (1024 * 1024 * 1024)
print(f"\n{'='*80}")
print(f"📊 TINY DATASET SUMMARY:")
print(f" Subset size: up to {N}x{N} tiles ({N*TILE_SIZE}x{N*TILE_SIZE} pixels)")
print(f" Total tiles copied: {total_copied}")
print(f" Total size: {total_mb:.1f} MB ({total_gb:.2f} GB)")
print(f" Output path: {tiny_path}")
print(f"{'='*80}")
# Create README
tiny_readme = tiny_path.parent / "README.txt"
with open(tiny_readme, 'w') as f:
f.write(f"""MatchGeo-DEM Tiny Dataset
=========================
This is a SPATIAL SUBSET of the full MatchGeo-DEM dataset.
Each city was cropped to a random contiguous {N}x{N} tile window.
Each tile is {TILE_SIZE}x{TILE_SIZE} pixels.
Total subset size per city: up to {N*TILE_SIZE}x{N*TILE_SIZE} pixels.
Configuration:
- Tiles per city: up to {N}x{N} = {N*N} tiles
- Tile size: {TILE_SIZE}x{TILE_SIZE} pixels
- Random seed: {SEED}
- Total tiles: {total_copied}
- Total size: {total_mb:.1f} MB
NOTE: The original _extent.geojson and _tiles.geojson files were omitted
because they no longer describe the cropped subset. Regenerate them from
the cropped DEM if your pipeline requires them.
For the full dataset, see:
https://doi.org/10.5281/zenodo.19339008
Last generated: {datetime.now().strftime('%Y-%m-%d')}
""")
print(f"\n✅ Tiny README saved to: {tiny_readme}") |