Clarify CarePath cohort, task counts and paired analyses
Browse files- L6/full100_inputs_scored217/README.md +3 -3
- README.md +9 -8
- supplementary/README.md +1 -1
- supplementary/full100_schema/README.md +2 -2
L6/full100_inputs_scored217/README.md
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#
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MRI references describe image-based structure invasion and T stage. The clinical TNM assessment in the care context can integrate PET/CT and other examinations.
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Form each care request by inserting the model's pathology/MRI predictions into the specified template fields. The remaining clinical context is supplied with the question. Earlier care answers are not fed into subsequent decisions in the main task.
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# CarePath cohort
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The CarePath cohort contains 100 patients and 417 scored tasks: 100 pathology assessments, 100 MRI T-stage assessments and 217 care decisions. Six treatment questions are unscored; their reasons are in `unscored/care_pending_review.jsonl`.
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MRI references describe image-based structure invasion and T stage. The clinical TNM assessment in the care context can integrate PET/CT and other examinations. MRI T staging uses AJCC edition 9.
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Form each care request by inserting the model's pathology/MRI predictions into the specified template fields. The remaining clinical context is supplied with the question. Earlier care answers are not fed into subsequent decisions in the main task.
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README.md
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| L3 | 69 pathology cases; 200 sequence questions; 2,700 structure cards from 100 patients; T400 and N400 |
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| L4 | 165 planning questions from 84 patients |
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| L5 | 305 decisions from 100 patients |
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| L6 | 100 patients,
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| O1 | 103 consultations from 42 cases, 1,726 scoring criteria |
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## Files and inputs
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images retain 512×512 display tiles and enter one multi-image request per patient.
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[The MRI data guide](L3/extensions/README.md) describes layouts and sampling.
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inputs, labels, and episode membership. Six
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reference answer; their exclusion reasons are
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have matched pathology, while 75 use assigned
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`supplementary/` also contains answer-format, longitudinal-history, MRI cine and
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physician-calibration material. Calibration labels describe sampled consultation
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responses; they are not physician labels for every
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## Patients and privacy
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| L3 | 69 pathology cases; 200 sequence questions; 2,700 structure cards from 100 patients; T400 and N400 |
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| L4 | 165 planning questions from 84 patients |
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| L5 | 305 decisions from 100 patients |
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| L6 | 100 patients, 417 scored tasks: 100 pathology, 100 MRI T, 217 care decisions |
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| O1 | 103 consultations from 42 cases, 1,726 scoring criteria |
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## Files and inputs
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images retain 512×512 display tiles and enter one multi-image request per patient.
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[The MRI data guide](L3/extensions/README.md) describes layouts and sampling.
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The 100-patient CarePath cohort uses AJCC edition 9 for MRI T staging. Its archive
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contains pathology, MRI and care inputs, labels, and episode membership. Six
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treatment questions have no scored reference answer; their exclusion reasons are
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provided. Twenty-five patients have matched pathology, while 75 use assigned
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pathology specimens. Evidence-replacement and interaction analyses in
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`supplementary/carepath25/` use 146 fixed care questions for 25 patients within
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this cohort. The main Care score uses 217 decisions across all 100 patients.
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`supplementary/` also contains answer-format, longitudinal-history, MRI cine and
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physician-calibration material. Calibration labels describe sampled consultation
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responses; they are not physician labels for every CarePath patient.
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## Patients and privacy
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supplementary/README.md
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- `option_free/`: 71 matched guideline questions with and without answer options.
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- `l5_history/`: full-history, time-stripped snapshot, order-only and strict-history inputs. The serial directory contains packed, current-delta and episode-replay inputs for 87 patients and 292 decisions.
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- `carepath25/`:
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- `carepath_history/`: episode definitions for care-history comparisons.
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- `full100_schema/`: the explicit MRI response-format control.
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- `external_mri/`: 53 T-stage cases from Nanfang Hospital, with their ten-panel inputs.
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- `option_free/`: 71 matched guideline questions with and without answer options.
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- `l5_history/`: full-history, time-stripped snapshot, order-only and strict-history inputs. The serial directory contains packed, current-delta and episode-replay inputs for 87 patients and 292 decisions.
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- `carepath25/`: evidence-replacement and interaction analyses using 146 fixed care questions for 25 patients within the 100-patient CarePath cohort.
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- `carepath_history/`: episode definitions for care-history comparisons.
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- `full100_schema/`: the explicit MRI response-format control.
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- `external_mri/`: 53 T-stage cases from Nanfang Hospital, with their ten-panel inputs.
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supplementary/full100_schema/README.md
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#
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This 100-patient prompt set explicitly lists the JSON response fields for structure invasion, involved structures, T stage and imaging evidence. It uses the
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The control changes response-format instructions for 75 patients. The remaining 25 prompts already contain the full schema. Compare care answers only when the actual image-derived input fields differ.
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# CarePath MRI response-format control
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This 100-patient prompt set explicitly lists the JSON response fields for structure invasion, involved structures, T stage and imaging evidence. It uses the CarePath MRI images and AJCC ninth-edition reference labels.
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The control changes response-format instructions for 75 patients. The remaining 25 prompts already contain the full schema. Compare care answers only when the actual image-derived input fields differ.
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