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README.md
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---
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license: cc-by-nc-sa-4.0
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tags:
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- medical-imaging
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- echocardiography
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- 3d-ultrasound
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- cardiac
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- segmentation
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task_categories:
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- image-segmentation
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pretty_name: "CETUS - 3D Echocardiography"
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size_categories:
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- n<1K
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---
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# CETUS — Cardiac Echo Training and Ultrasound Segmentation
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## Description
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The CETUS dataset contains **45 patients** of real 3D echocardiography volumes
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acquired at two cardiac phases:
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- **End-Diastole (ED)** — `patientXX_ED.nii.gz`
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- **End-Systole (ES)** — `patientXX_ES.nii.gz`
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Ground-truth left-ventricular segmentation masks are provided as
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`patientXX_ED_gt.nii.gz` and `patientXX_ES_gt.nii.gz`.
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## File Structure
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```
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dataset/
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patient01/
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patient01_ED.nii.gz
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patient01_ED_gt.nii.gz
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patient01_ES.nii.gz
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patient01_ES_gt.nii.gz
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patient02/
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...
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...
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patient45/
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...
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LICENSE_TERMS.md
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MANDATORY_CITATION.md
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jupyter/
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script_cetus.ipynb
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LICENSE_TERMS.md
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MANDATORY_CITATION.md
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Resources.zip
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```
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## Format
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- **Volume format**: NIfTI (`.nii.gz`)
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- **Typical shape**: varies per patient (see metadata in NIfTI headers)
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## Usage
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```python
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import SimpleITK as sitk
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img = sitk.ReadImage("dataset/patient01/patient01_ED.nii.gz")
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volume = sitk.GetArrayFromImage(img) # shape: (Z, Y, X)
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print(f"Shape: {volume.shape}, dtype: {volume.dtype}")
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```
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## Source
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Original dataset page: <https://www.creatis.insa-lyon.fr/Challenge/CETUS/databases.html>
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## License
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CC BY-NC-SA 4.0 — free for **non-commercial scientific research** only.
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## Mandatory Citation
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> O. Bernard, et al.
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> "Standardized Evaluation System for Left Ventricular Segmentation
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> Algorithms in 3D Echocardiography"
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> in *IEEE Transactions on Medical Imaging*, vol. 35, no. 4, pp. 967–977,
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> April 2016.
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> <https://doi.org/10.1109/tmi.2015.2503890>
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