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experiments/<frozen runpy>-166fcc.json
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| 1 |
+
{
|
| 2 |
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"ray_job_id": "10000000",
|
| 3 |
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"git_commit": "aeed1de01a66f6a3af9d16a303d182a34f313445",
|
| 4 |
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"caller_path": "<frozen runpy>",
|
| 5 |
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"created_date": "2025-10-30T02:01:26.302279",
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| 6 |
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"user": "ubuntu",
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| 7 |
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"prefix": "hf://datasets/plantcad/_dev_pc2_eval_20251029_r1",
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| 8 |
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"description": null,
|
| 9 |
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"steps": [
|
| 10 |
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{
|
| 11 |
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"name": "acceptor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768",
|
| 12 |
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.core_noncore_task",
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| 13 |
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"config": {
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| 14 |
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"input_path": null,
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| 15 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_20251029_r1/acceptor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768-b25c23",
|
| 16 |
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
|
| 17 |
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"task": "acceptor_core_noncore_classification",
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| 18 |
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"split": "test_maize",
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| 19 |
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"seq_column": "sequence",
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| 20 |
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"label_column": "label",
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| 21 |
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"num_workers": null,
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| 22 |
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"model": "kuleshov-group/PlantCAD2-Small-l24-d0768",
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| 23 |
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| 24 |
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| 25 |
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| 26 |
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| 27 |
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| 28 |
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| 29 |
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| 31 |
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| 32 |
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],
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| 33 |
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"motif_len": 3
|
| 34 |
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},
|
| 35 |
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"description": "Acceptor Core Noncore Classification (test_maize, PlantCAD2-Small-l24-d0768)",
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| 36 |
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"override_output_path": null,
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| 37 |
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"version": {
|
| 38 |
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"name": "acceptor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768",
|
| 39 |
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"config": {},
|
| 40 |
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"dependencies": []
|
| 41 |
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},
|
| 42 |
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"dependencies": [],
|
| 43 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_20251029_r1/acceptor_core_noncore_classification_test_maize_PlantCAD2-Small-l24-d0768-b25c23"
|
| 44 |
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},
|
| 45 |
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{
|
| 46 |
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"name": "acceptor_recovery_test_maize_PlantCAD2-Small-l24-d0768",
|
| 47 |
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.motif_task",
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| 48 |
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"config": {
|
| 49 |
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"input_path": null,
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| 50 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_20251029_r1/acceptor_recovery_test_maize_PlantCAD2-Small-l24-d0768-200d47",
|
| 51 |
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
|
| 52 |
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"task": "acceptor_recovery",
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| 53 |
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"split": "test_maize",
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| 54 |
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| 55 |
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"label_column": "label",
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| 56 |
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| 57 |
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| 58 |
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| 59 |
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| 60 |
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| 66 |
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| 67 |
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| 68 |
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|
| 69 |
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},
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| 70 |
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"description": "Acceptor Recovery (test_maize, PlantCAD2-Small-l24-d0768)",
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| 71 |
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"override_output_path": null,
|
| 72 |
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"version": {
|
| 73 |
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"name": "acceptor_recovery_test_maize_PlantCAD2-Small-l24-d0768",
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| 74 |
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"config": {},
|
| 75 |
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"dependencies": []
|
| 76 |
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},
|
| 77 |
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"dependencies": [],
|
| 78 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_20251029_r1/acceptor_recovery_test_maize_PlantCAD2-Small-l24-d0768-200d47"
|
| 79 |
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},
|
| 80 |
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{
|
| 81 |
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"name": "conservation_within_poaceae_non_tis_test_PlantCAD2-Small-l24-d0768",
|
| 82 |
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.evo_cons_task",
|
| 83 |
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"config": {
|
| 84 |
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"input_path": null,
|
| 85 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_20251029_r1/conservation_within_poaceae_non_tis_test_PlantCAD2-Small-l24-d0768-21905f",
|
| 86 |
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
|
| 87 |
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"task": "conservation_within_poaceae_non_tis",
|
| 88 |
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"split": "test",
|
| 89 |
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"seq_column": "sequence",
|
| 90 |
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"label_column": "label",
|
| 91 |
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"num_workers": null,
|
| 92 |
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"model": "kuleshov-group/PlantCAD2-Small-l24-d0768",
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| 93 |
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"device": "cuda",
|
| 94 |
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"batch_size": 32,
|
| 95 |
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"sample_rate": 1.0,
|
| 96 |
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|
| 97 |
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"sample_seed": 42,
|
| 98 |
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"mask_token_index": 4095
|
| 99 |
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},
|
| 100 |
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"description": "Conservation Within Poaceae Non Tis (test, PlantCAD2-Small-l24-d0768)",
|
| 101 |
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"override_output_path": null,
|
| 102 |
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"version": {
|
| 103 |
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"name": "conservation_within_poaceae_non_tis_test_PlantCAD2-Small-l24-d0768",
|
| 104 |
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"config": {},
|
| 105 |
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"dependencies": []
|
| 106 |
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},
|
| 107 |
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"dependencies": [],
|
| 108 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_20251029_r1/conservation_within_poaceae_non_tis_test_PlantCAD2-Small-l24-d0768-21905f"
|
| 109 |
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},
|
| 110 |
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{
|
| 111 |
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"name": "conservation_within_andropogoneae_test_PlantCAD2-Small-l24-d0768",
|
| 112 |
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.evo_cons_task",
|
| 113 |
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"config": {
|
| 114 |
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"input_path": null,
|
| 115 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_20251029_r1/conservation_within_andropogoneae_test_PlantCAD2-Small-l24-d0768-3d8c0e",
|
| 116 |
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
|
| 117 |
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"task": "conservation_within_andropogoneae",
|
| 118 |
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"split": "test",
|
| 119 |
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"seq_column": "sequence",
|
| 120 |
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"label_column": "label",
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| 121 |
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"num_workers": null,
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| 122 |
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"model": "kuleshov-group/PlantCAD2-Small-l24-d0768",
|
| 123 |
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"device": "cuda",
|
| 124 |
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"batch_size": 32,
|
| 125 |
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| 126 |
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"sample_max_size": 5000,
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| 127 |
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"sample_seed": 42,
|
| 128 |
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|
| 129 |
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},
|
| 130 |
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"description": "Conservation Within Andropogoneae (test, PlantCAD2-Small-l24-d0768)",
|
| 131 |
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"override_output_path": null,
|
| 132 |
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"version": {
|
| 133 |
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"name": "conservation_within_andropogoneae_test_PlantCAD2-Small-l24-d0768",
|
| 134 |
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"config": {},
|
| 135 |
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"dependencies": []
|
| 136 |
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},
|
| 137 |
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"dependencies": [],
|
| 138 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_20251029_r1/conservation_within_andropogoneae_test_PlantCAD2-Small-l24-d0768-3d8c0e"
|
| 139 |
+
},
|
| 140 |
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{
|
| 141 |
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"name": "conservation_within_poaceae_tis_test_PlantCAD2-Small-l24-d0768",
|
| 142 |
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.evo_cons_task",
|
| 143 |
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"config": {
|
| 144 |
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"input_path": null,
|
| 145 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_20251029_r1/conservation_within_poaceae_tis_test_PlantCAD2-Small-l24-d0768-a55224",
|
| 146 |
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
|
| 147 |
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"task": "conservation_within_poaceae_tis",
|
| 148 |
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"split": "test",
|
| 149 |
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"seq_column": "sequence",
|
| 150 |
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"label_column": "label",
|
| 151 |
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"num_workers": null,
|
| 152 |
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"model": "kuleshov-group/PlantCAD2-Small-l24-d0768",
|
| 153 |
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"device": "cuda",
|
| 154 |
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"batch_size": 32,
|
| 155 |
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"sample_rate": 1.0,
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| 156 |
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|
| 157 |
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"sample_seed": 42,
|
| 158 |
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"mask_token_index": 4095
|
| 159 |
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},
|
| 160 |
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"description": "Conservation Within Poaceae Tis (test, PlantCAD2-Small-l24-d0768)",
|
| 161 |
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"override_output_path": null,
|
| 162 |
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"version": {
|
| 163 |
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"name": "conservation_within_poaceae_tis_test_PlantCAD2-Small-l24-d0768",
|
| 164 |
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"config": {},
|
| 165 |
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"dependencies": []
|
| 166 |
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},
|
| 167 |
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"dependencies": [],
|
| 168 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_20251029_r1/conservation_within_poaceae_tis_test_PlantCAD2-Small-l24-d0768-a55224"
|
| 169 |
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},
|
| 170 |
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{
|
| 171 |
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"name": "structural_variant_effect_prediction_test_PlantCAD2-Small-l24-d0768",
|
| 172 |
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"fn_name": "src.pipelines.plantcad2.evaluation.tasks.sv_task",
|
| 173 |
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"config": {
|
| 174 |
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"input_path": null,
|
| 175 |
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"output_path": "hf://datasets/plantcad/_dev_pc2_eval_20251029_r1/structural_variant_effect_prediction_test_PlantCAD2-Small-l24-d0768-6d7d00",
|
| 176 |
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"repo_id": "plantcad/PlantCAD2_zero_shot_tasks",
|
| 177 |
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"task": "structural_variant_effect_prediction",
|
| 178 |
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"split": "test",
|
| 179 |
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"seq_column": "sequence",
|
| 180 |
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"label_column": "label",
|
| 181 |
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"num_workers": null,
|
| 182 |
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"model": "kuleshov-group/PlantCAD2-Small-l24-d0768",
|
| 183 |
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"device": "cuda",
|
| 184 |
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|
| 185 |
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|
| 186 |
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|
| 187 |
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|
| 188 |
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|
| 189 |
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},
|
| 190 |
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"description": "Structural Variant Effect Prediction (test, PlantCAD2-Small-l24-d0768)",
|
| 191 |
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"override_output_path": null,
|
| 192 |
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"version": {
|
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