Adds views.

.gitignore

@@ -5,6 +5,9 @@
 *.log
 runhyd.txt
 
+# Extracted NPZ folders (transient; created and deleted during processing)
+flslnk_npz/
+
 # Flow3D binary simulation outputs (content already archived in flsgrf.zip / flslnk_npz.zip)
 hd3out.*
 hd3msg.*

pyproject.toml

@@ -6,4 +6,9 @@ readme = "README.md"
 requires-python = ">=3.14"
 dependencies = [
     "hf>=1.10.2",
+    "imageio>=2.37.3",
+    "matplotlib>=3.10.8",
+    "numpy>=2.4.4",
+    "pyvista>=0.47.3",
+    "tqdm>=4.67.3",
 ]

scripts/01_generate_views.py

@@ -0,0 +1,545 @@
+#!/usr/bin/env python3
+"""
+Generate all views for every unprocessed simulation case.
+
+W (the adaptive crop half-width) is derived directly from the laser spot
+radius in the prepin file — no temperature scan needed.
+
+Single pass over source timesteps produces:
+  • top-down 2D projection (50×50, 1 mm × 1 mm) per field
+  • adaptive-crop 3D volume (Z×W×W) per field
+
+Outputs written to views/<case>/:
+  metadata.json          simulation parameters + per-field stats
+  cropped.npz            all fields (N, Z, W, W), timestep, power,
+                         velocity, window_cells
+  <field>/top_down.gif   matplotlib 2D animation (1 mm × 1 mm)
+  <field>/cropped.gif    PyVista 3D volume render animation
+
+Cases that already have cropped.npz are skipped automatically.
+Use --workers to control parallelism (default: cpu_count // 2).
+"""
+
+import argparse
+import json
+import multiprocessing
+import re
+import shutil
+import zipfile
+from pathlib import Path
+from typing import NamedTuple
+
+import imageio
+import matplotlib.animation as animation
+import matplotlib.pyplot as plt
+import numpy as np
+import pyvista as pv
+from tqdm import tqdm
+
+# ── Domain constants (CGS: cm) ────────────────────────────────────────────────
+CELL_SIZE_CM  = 0.002
+TOP_DOWN_HALF = 25       # fixed 1 mm window → 50 cells → ±25
+LIQUIDUS_K    = 1697.15
+T_AMBIENT     = 299.15
+BUFFER_CELLS  = 5
+# Ghost cell counts added by FLOW-3D at array boundaries
+GHOST_Z = 2
+GHOST_Y = 1
+GHOST_X = 1
+
+
+# ── Field configuration ───────────────────────────────────────────────────────
+class Field(NamedTuple):
+    name: str
+    label: str
+    cmap: str
+    project: str              # "max" or "sum" along Z for 2-D top-down
+    vmin_fixed: float | None
+    vmax_pct: float = 99.9
+    vmin_pct: float = 0.0
+    sparse: bool = False      # percentile over nonzero cells only
+
+
+FIELDS = [
+    Field("temperature",          "Temperature (K)",             "inferno", "max",  T_AMBIENT),
+    Field("fraction_of_fluid",    "Fluid depth (cells)",         "Blues",   "sum",  None,    99.9, 1.0),
+    Field("liquid_label",         "Liquid region",               "plasma",  "max",  0.0,     100.0),
+    Field("melt_region",          "Melt region",                 "hot",     "max",  0.0,     99.9, 0.0, sparse=True),
+    Field("pressure",             "Pressure (dyne/cm²)",         "RdBu_r",  "max",  None,    99.9, 0.1),
+    Field("velocity_magnitude",   "Velocity magnitude (cm/s)",   "viridis", "max",  0.0,     99.9, 0.0, sparse=True),
+    Field("temperature_gradient", "Temperature gradient (raw)",  "magma",   "max",  0.0,     99.9, 0.0, sparse=True),
+    Field("gradient_magnitude",   "|∇T| from components (K/cm)", "magma",   "max",  0.0,     99.9, 0.0, sparse=True),
+]
+FIELD_MAP = {f.name: f for f in FIELDS}
+
+
+# ── Prepin parsing ────────────────────────────────────────────────────────────
+
+def find_prepin(case_dir: Path) -> Path:
+    matches = list(case_dir.glob("prepin.*"))
+    if not matches:
+        raise FileNotFoundError(f"No prepin file in {case_dir}")
+    return matches[0]
+
+
+def parse_prepin(text: str) -> dict:
+    def f(pat): return float(re.search(pat, text).group(1))
+    power_raw = f(r"powlbm\(1,1\)\s*=\s*([\d.eE+-]+)")
+    return {
+        "px1":         f(r"px\(1\)\s*=\s*([\d.eE+-]+)"),        # cm, mesh X start
+        "py1":         f(r"py\(1\)\s*=\s*([\d.eE+-]+)"),        # cm, mesh Y start
+        "xb0":         f(r"xb0lbm\(1\)\s*=\s*([\d.eE+-]+)"),   # cm
+        "yb0":         f(r"yb0lbm\(1\)\s*=\s*([\d.eE+-]+)"),   # cm
+        "velocity_cms":f(r"utlbm\(1,1\)\s*=\s*([\d.eE+-]+)"),  # cm/s
+        "spot_radius": f(r"rflbm\(1\)\s*=\s*([\d.eE+-]+)"),    # cm
+        "gauss_radius":f(r"rblbm\(1\)\s*=\s*([\d.eE+-]+)"),    # cm
+        "power_w":     round(power_raw / 1e7),
+        "t_liquidus":  f(r"tl1\s*=\s*([\d.eE+-]+)"),
+        "t_solidus":   f(r"ts1\s*=\s*([\d.eE+-]+)"),
+        "t_finish":    f(r"twfin\s*=\s*([\d.eE+-]+)"),
+    }
+
+
+def beam_x_index(t: float, pp: dict) -> int:
+    """Beam X index relative to the mesh origin (px1)."""
+    x_abs = pp["xb0"] + pp["velocity_cms"] * t
+    return round((x_abs - pp["px1"] - CELL_SIZE_CM / 2) / CELL_SIZE_CM)
+
+
+def domain_from_raw(raw: dict, pp: dict) -> tuple[int, int, int, int]:
+    """Return (nz, ny, nx, y_center) from the first npz array and prepin.
+
+    FLOW-3D appends ghost cells at the end of each axis:
+      Z: +2,  Y: +1,  X: +1
+    y_center is the beam Y position as a cell index within the mesh.
+    """
+    shape = raw["temperature"].shape          # (1, nz+2, ny+1, nx+1)
+    nz = shape[1] - GHOST_Z
+    ny = shape[2] - GHOST_Y
+    nx = shape[3] - GHOST_X
+    y_center = round((pp["yb0"] - pp["py1"]) / CELL_SIZE_CM)
+    return nz, ny, nx, y_center
+
+
+def crop_half_from_prepin(spot_radius_cm: float) -> int:
+    """Derive the crop half-width from the laser spot radius.
+
+    Uses 4× the spot radius as a conservative bound for the melt pool
+    half-width in Y, then adds the safety buffer.
+    """
+    return int(np.ceil(spot_radius_cm / CELL_SIZE_CM * 4)) + BUFFER_CELLS
+
+
+# ── Cropping helpers ──────────────────────────────────────────────────────────
+
+def _crop_params(center: int, half: int, size: int) -> tuple[int, int, int, int]:
+    """Compute (lo, hi, pad_left, pad_right) for a centered crop of width 2*half.
+
+    Always guarantees (hi - lo) + pad_left + pad_right == 2 * half, even when
+    the window is partially or fully outside [0, size).
+    """
+    lo = center - half
+    hi = center + half
+    pl = max(0, -lo);    lo = max(0, lo)
+    pr = max(0, hi - size); hi = min(size, hi)
+    lo = min(lo, hi)                     # clamp when window is past the end
+    pr = 2 * half - pl - (hi - lo)      # ensure exact output width
+    return lo, hi, pl, pr
+
+
+def top_down_2d(proj: np.ndarray, beam_x: int, y_center: int) -> np.ndarray:
+    """(Y, X) → (TOP_DOWN_HALF*2, TOP_DOWN_HALF*2) fixed 1 mm × 1 mm window."""
+    # X axis: follow the beam
+    xlo, xhi, xpl, xpr = _crop_params(beam_x, TOP_DOWN_HALF, proj.shape[1])
+    w = proj[:, xlo:xhi]
+    if xpl or xpr:
+        w = np.pad(w, ((0, 0), (xpl, xpr)), constant_values=0.0)
+    # Y axis: centered on beam y position
+    ylo, yhi, ypt, ypb = _crop_params(y_center, TOP_DOWN_HALF, w.shape[0])
+    w = w[ylo:yhi, :]
+    if ypt or ypb:
+        w = np.pad(w, ((ypt, ypb), (0, 0)), constant_values=0.0)
+    return w
+
+
+def crop_3d(arr: np.ndarray, beam_x: int, half: int, y_center: int,
+            pad_val: float = 0.0) -> np.ndarray:
+    """(Z, Y, X[, C]) → (Z, W, W[, C]) adaptive square window."""
+    xlo, xhi, xpl, xpr = _crop_params(beam_x, half, arr.shape[2])
+    ylo, yhi, ypt, ypb = _crop_params(y_center, half, arr.shape[1])
+    w = arr[:, ylo:yhi, xlo:xhi]
+    if xpl or xpr or ypt or ypb:
+        pad = ((0,0),(ypt,ypb),(xpl,xpr)) if arr.ndim == 3 \
+              else ((0,0),(ypt,ypb),(xpl,xpr),(0,0))
+        w = np.pad(w, pad, constant_values=pad_val)
+    return w
+
+
+# ── Per-timestep extraction ───────────────────────────────────────────────────
+
+def extract(
+    raw: dict, beam_x: int, crop_half: int,
+    nz: int, ny: int, nx: int, y_center: int,
+) -> tuple[dict, dict]:
+    """Return (top_down, cropped) dicts from one loaded npz.
+
+    top_down[field] : (TOP_DOWN_HALF*2, TOP_DOWN_HALF*2)
+    cropped[field]  : (nz, W, W)   scalars
+    cropped['vx_vy_vz']      : (nz, W, W, 3)
+    cropped['dtdx_dtdy_dtdz']: (nz, W, W, 3)
+    """
+    def slc(k):
+        return raw[k][0, :nz, :ny, :nx]
+
+    def proj(arr, method):
+        return arr.max(axis=0) if method == "max" else arr.sum(axis=0)
+
+    td, cr = {}, {}
+
+    for name, method in [
+        ("temperature",          "max"),
+        ("fraction_of_fluid",    "sum"),
+        ("liquid_label",         "max"),
+        ("melt_region",          "max"),
+        ("pressure",             "max"),
+        ("temperature_gradient", "max"),
+    ]:
+        arr = slc(name)
+        pad = T_AMBIENT if name == "temperature" else 0.0
+        td[name] = top_down_2d(proj(arr, method), beam_x, y_center)
+        cr[name] = crop_3d(arr, beam_x, crop_half, y_center, pad_val=pad)
+
+    vel  = slc("vx_vy_vz")
+    vmag = np.linalg.norm(vel, axis=-1)
+    td["velocity_magnitude"] = top_down_2d(proj(vmag, "max"), beam_x, y_center)
+    cr["velocity_magnitude"] = crop_3d(vmag, beam_x, crop_half, y_center)
+    cr["vx_vy_vz"]           = crop_3d(vel,  beam_x, crop_half, y_center)
+
+    grad = slc("dtdx_dtdy_dtdz")
+    gmag = np.linalg.norm(grad, axis=-1)
+    td["gradient_magnitude"]  = top_down_2d(proj(gmag, "max"), beam_x, y_center)
+    cr["gradient_magnitude"]  = crop_3d(gmag, beam_x, crop_half, y_center)
+    cr["dtdx_dtdy_dtdz"]      = crop_3d(grad, beam_x, crop_half, y_center)
+
+    return td, cr
+
+
+# ── GIF: top-down (matplotlib) ────────────────────────────────────────────────
+
+def make_top_down_gif(
+    frames: np.ndarray, field: Field, case_name: str,
+    out_path: Path, fps: int, max_frames: int,
+) -> None:
+    stride = max(1, len(frames) // max_frames)
+    gf     = frames[::stride]
+    src    = gf[gf > 0] if field.sparse else gf
+    vmax   = float(np.percentile(src if src.size else gf, field.vmax_pct))
+    vmin   = field.vmin_fixed if field.vmin_fixed is not None \
+             else float(np.percentile(src if src.size else gf, field.vmin_pct))
+
+    fig, ax = plt.subplots(figsize=(5, 5))
+    im = ax.imshow(gf[0], origin="lower", cmap=field.cmap,
+                   vmin=vmin, vmax=vmax, extent=[0, 1, 0, 1])
+    ax.set_xlabel("X (mm)"); ax.set_ylabel("Y (mm)")
+    ax.set_title(f"{case_name}\n{field.label}")
+    plt.colorbar(im, ax=ax, label=field.label)
+    plt.tight_layout()
+
+    def _update(i):
+        im.set_data(gf[i])
+        return [im]
+
+    anim = animation.FuncAnimation(fig, _update, frames=len(gf),
+                                   interval=1000 // fps, blit=True)
+    anim.save(out_path, writer="pillow", fps=fps)
+    plt.close()
+
+
+# ── GIF: cropped 3D volume (PyVista) ─────────────────────────────────────────
+
+def _render_pyvista(vol: np.ndarray, cmap: str, opacity,
+                    vmin: float, vmax: float) -> np.ndarray:
+    nz, ny, nx = vol.shape
+    grid = pv.ImageData(dimensions=(nx, ny, nz),
+                        spacing=(CELL_SIZE_CM,) * 3)
+    grid.point_data["v"] = vol.transpose(2, 1, 0).ravel(order="F")
+    pl = pv.Plotter(off_screen=True, window_size=[600, 500])
+    pl.set_background("black")
+    pl.add_volume(grid, scalars="v", cmap=cmap, opacity=opacity,
+                  clim=[vmin, vmax], show_scalar_bar=False)
+    pl.camera_position = "iso"
+    img = pl.screenshot(return_img=True)
+    pl.close()
+    return img
+
+
+def make_cropped_gif(
+    frames: np.ndarray, field: Field,
+    out_path: Path, fps: int, max_frames: int,
+) -> None:
+    stride = max(1, len(frames) // max_frames)
+    gf     = frames[::stride]
+    src    = frames[frames > 0] if field.sparse else frames
+    if src.size == 0:
+        return
+    vmax = float(np.percentile(src, field.vmax_pct))
+    vmin = field.vmin_fixed if field.vmin_fixed is not None \
+           else float(np.percentile(src, field.vmin_pct))
+
+    # For temperature: fade in above liquidus; others: standard sigmoid
+    if field.name == "temperature":
+        opacity = [0.0, 0.0, 0.05, 0.3, 0.8, 1.0]
+    else:
+        opacity = field.cmap  # reuse cmap name as opacity preset string
+        opacity = "sigmoid"
+
+    rendered = [_render_pyvista(f, field.cmap, opacity, vmin, vmax) for f in gf]
+    imageio.mimsave(str(out_path), rendered, fps=fps, loop=0)
+
+
+# ── Metadata ──────────────────────────────────────────────────────────────────
+
+def build_metadata(
+    case_name: str,
+    pp: dict,
+    npz_files: list[Path],
+    W: int,
+    nz: int, ny: int, nx: int,
+    crop_data: dict[str, np.ndarray],
+    timesteps: np.ndarray,
+) -> dict:
+    vel_mps = pp["velocity_cms"] / 100.0
+
+    meta: dict = {
+        "case_id": case_name,
+        "simulation": {
+            "power_w":        pp["power_w"],
+            "velocity_mps":   vel_mps,
+            "angle_deg":      int(re.search(r"A(\d+)deg", case_name).group(1)),
+            "finish_time_s":  pp["t_finish"],
+            "n_timesteps":    len(timesteps),
+            "t_start_s":      float(timesteps[0]),
+            "t_end_s":        float(timesteps[-1]),
+        },
+        "laser": {
+            "spot_radius_cm":  pp["spot_radius"],
+            "gauss_radius_cm": pp["gauss_radius"],
+            "beam_start_x_cm": pp["xb0"],
+            "beam_start_y_cm": pp["yb0"],
+        },
+        "material": {
+            "name":           "316L Stainless Steel",
+            "t_liquidus_k":   pp["t_liquidus"],
+            "t_solidus_k":    pp["t_solidus"],
+            "t_ambient_k":    T_AMBIENT,
+        },
+        "domain": {
+            "cell_size_um":  CELL_SIZE_CM * 1e4,
+            "nx": nx, "ny": ny, "nz": nz,
+            "x_mm": nx * CELL_SIZE_CM * 10,
+            "y_mm": ny * CELL_SIZE_CM * 10,
+            "z_mm": nz * CELL_SIZE_CM * 10,
+        },
+        "windows": {
+            "top_down_cells":  TOP_DOWN_HALF * 2,
+            "top_down_mm":     TOP_DOWN_HALF * 2 * CELL_SIZE_CM * 10,
+            "crop_cells":      W,
+            "crop_mm":         W * CELL_SIZE_CM * 10,
+            "crop_z_cells":    nz,
+            "crop_z_mm":       nz * CELL_SIZE_CM * 10,
+        },
+        "fields": {},
+    }
+
+    for field in FIELDS:
+        key = field.name
+        if key not in crop_data:
+            continue
+        arr = crop_data[key]
+        nz_vals = arr[arr != 0] if field.sparse else arr
+        meta["fields"][key] = {
+            "shape":  list(arr.shape),
+            "min":    float(arr.min()),
+            "max":    float(arr.max()),
+            "mean":   float(np.mean(nz_vals)) if nz_vals.size else 0.0,
+            "std":    float(np.std(nz_vals))  if nz_vals.size else 0.0,
+            "p99":    float(np.percentile(nz_vals, 99)) if nz_vals.size else 0.0,
+        }
+
+    return meta
+
+
+# ── Per-case worker ───────────────────────────────────────────────────────────
+
+def process_case(args: tuple) -> str:
+    """Process one case. Runs in a worker process. Returns case name on completion."""
+    import os
+    case_name, root, gif_fps, gif_max_frames = args
+
+    # Redirect stderr → /dev/null in this worker to suppress EGL/libEGL/VTK noise.
+    # Worker processes are isolated, so this doesn't affect the main process.
+    # Python-level exceptions still propagate back via the pool mechanism.
+    _devnull = os.open(os.devnull, os.O_WRONLY)
+    os.dup2(_devnull, 2)
+    os.close(_devnull)
+
+    # Each worker process needs its own OFF_SCREEN flag
+    pv.OFF_SCREEN = True
+    try:
+        import vtk
+        vtk.vtkObject.GlobalWarningDisplayOff()
+    except Exception:
+        pass
+
+    case_dir  = root / "source" / case_name
+    npz_dir   = case_dir / "flslnk_npz"
+    out_dir   = root / "views" / case_name
+    out_dir.mkdir(parents=True, exist_ok=True)
+
+    # ── unzip flslnk_npz.zip if not already extracted ─────────────────────────
+    zip_path   = case_dir / "flslnk_npz.zip"
+    unzipped   = False
+    if not npz_dir.exists():
+        if not zip_path.exists():
+            raise FileNotFoundError(f"Neither flslnk_npz/ nor flslnk_npz.zip found in {case_dir}")
+        npz_dir.mkdir()
+        with zipfile.ZipFile(zip_path) as zf:
+            zf.extractall(npz_dir)
+        unzipped = True
+
+    pp        = parse_prepin(find_prepin(case_dir).read_text())
+    npz_files = sorted(npz_dir.glob("*.npz"))
+    crop_half = crop_half_from_prepin(pp["spot_radius"])
+    W         = crop_half * 2
+
+    # ── determine domain dimensions from first readable timestep ─────────────
+    nz = ny = nx = y_center = None
+    for _f in npz_files:
+        try:
+            first_raw = np.load(_f)
+            nz, ny, nx, y_center = domain_from_raw(first_raw, pp)
+            break
+        except (EOFError, Exception):
+            continue
+    if nz is None:
+        raise RuntimeError(f"No readable NPZ files found for {case_name}")
+
+    # ── extraction ────────────────────────────────────────────────────────────
+    td_acc:   dict[str, list] = {}
+    crop_acc: dict[str, list] = {}
+    timesteps: list[float]    = []
+    n_skipped = 0
+
+    for npz_path in tqdm(npz_files, desc=case_name, leave=False, position=1):
+        try:
+            raw = np.load(npz_path)
+            t   = float(raw["timestep"][0])
+        except (EOFError, Exception):
+            n_skipped += 1
+            continue
+        bx  = beam_x_index(t, pp)
+        td, cr = extract(raw, bx, crop_half, nz, ny, nx, y_center)
+        for k, v in td.items():  td_acc.setdefault(k, []).append(v)
+        for k, v in cr.items():  crop_acc.setdefault(k, []).append(v)
+        timesteps.append(t)
+
+    if n_skipped:
+        tqdm.write(f"  ! {case_name}: skipped {n_skipped} corrupt NPZ files")
+
+    ts          = np.array(timesteps, dtype=np.float64)
+    crop_arrays = {k: np.array(v, dtype=np.float32) for k, v in crop_acc.items()}
+
+    # ── cropped.npz ───────────────────────────────────────────────────────────
+    np.savez_compressed(out_dir / "cropped.npz", **{
+        "timestep":     ts,
+        "power":        np.array([pp["power_w"]], dtype=np.int32),
+        "velocity":     np.array([pp["velocity_cms"] / 100.0], dtype=np.float64),
+        "window_cells": np.array([W], dtype=np.int32),
+        **crop_arrays,
+    })
+
+    # ── delete extracted npz folder if we unzipped it ────────────────────────
+    if unzipped:
+        shutil.rmtree(npz_dir)
+
+    # ── metadata.json ─────────────────────────────────────────────────────────
+    meta = build_metadata(case_name, pp, npz_files, W, nz, ny, nx, crop_arrays, ts)
+    with open(out_dir / "metadata.json", "w") as f:
+        json.dump(meta, f, indent=2)
+
+    # ── GIFs ──────────────────────────────────────────────────────────────────
+    for field in tqdm(FIELDS, desc=f"{case_name} GIFs", leave=False, position=1):
+        fd = out_dir / field.name
+        fd.mkdir(exist_ok=True)
+        make_top_down_gif(
+            np.array(td_acc[field.name], dtype=np.float32),
+            field, case_name, fd / "top_down.gif", gif_fps, gif_max_frames,
+        )
+        make_cropped_gif(
+            np.array(crop_acc[field.name], dtype=np.float32),
+            field, fd / "cropped.gif", gif_fps, gif_max_frames,
+        )
+
+    return case_name
+
+
+# ── Main ──────────────────────────────────────────────────────────────────────
+
+def main() -> None:
+    parser = argparse.ArgumentParser(
+        description="Generate all views for every unprocessed simulation case."
+    )
+    parser.add_argument(
+        "cases", nargs="*",
+        help="Case folder names under source/ (default: all unprocessed)",
+    )
+    parser.add_argument("--gif-fps",        type=int, default=20)
+    parser.add_argument("--gif-max-frames", type=int, default=200)
+    parser.add_argument(
+        "--workers", type=int,
+        default=max(1, multiprocessing.cpu_count() // 2),
+        help="Parallel worker processes (default: cpu_count // 2)",
+    )
+    args = parser.parse_args()
+
+    root = Path(__file__).parent.parent
+
+    # Resolve case list — explicit args or all source folders with flslnk_npz/
+    if args.cases:
+        candidates = [root / "source" / c for c in args.cases]
+    else:
+        candidates = sorted((root / "source").iterdir())
+
+    # Filter to valid, unprocessed cases
+    todo = []
+    for case_dir in candidates:
+        npz_dir = case_dir / "flslnk_npz"
+        zip_path = case_dir / "flslnk_npz.zip"
+        cropped  = root / "views" / case_dir.name / "cropped.npz"
+        if not npz_dir.exists() and not zip_path.exists():
+            print(f"  skip {case_dir.name} — no flslnk_npz/ or flslnk_npz.zip")
+            continue
+        if cropped.exists():
+            print(f"  skip {case_dir.name} — already done")
+            continue
+        todo.append(case_dir.name)
+
+    if not todo:
+        print("Nothing to do.")
+        return
+
+    print(f"\nProcessing {len(todo)} cases with {args.workers} workers\n")
+
+    worker_args = [(c, root, args.gif_fps, args.gif_max_frames) for c in todo]
+
+    with multiprocessing.Pool(args.workers) as pool:
+        for done in tqdm(
+            pool.imap_unordered(process_case, worker_args),
+            total=len(todo), desc="Cases", position=0,
+        ):
+            tqdm.write(f"  ✓ {done}")
+
+
+if __name__ == "__main__":
+    multiprocessing.set_start_method("spawn", force=True)
+    main()

uv.lock

@@ -8,10 +8,22 @@ version = "0.1.0"
 source = { virtual = "." }
 dependencies = [
     { name = "hf" },
+    { name = "imageio" },
+    { name = "matplotlib" },
+    { name = "numpy" },
+    { name = "pyvista" },
+    { name = "tqdm" },
 ]
 
 [package.metadata]
-requires-dist = [{ name = "hf", specifier = ">=1.10.2" }]
+requires-dist = [
+    { name = "hf", specifier = ">=1.10.2" },
+    { name = "imageio", specifier = ">=2.37.3" },
+    { name = "matplotlib", specifier = ">=3.10.8" },
+    { name = "numpy", specifier = ">=2.4.4" },
+    { name = "pyvista", specifier = ">=0.47.3" },
+    { name = "tqdm", specifier = ">=4.67.3" },
+]
 
 [[package]]
 name = "annotated-doc"
@@ -34,6 +46,15 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/da/42/e921fccf5015463e32a3cf6ee7f980a6ed0f395ceeaa45060b61d86486c2/anyio-4.13.0-py3-none-any.whl", hash = "sha256:08b310f9e24a9594186fd75b4f73f4a4152069e3853f1ed8bfbf58369f4ad708", size = 114353, upload-time = "2026-03-24T12:59:08.246Z" },
 ]
 
+[[package]]
+name = "attrs"
+version = "26.1.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/9a/8e/82a0fe20a541c03148528be8cac2408564a6c9a0cc7e9171802bc1d26985/attrs-26.1.0.tar.gz", hash = "sha256:d03ceb89cb322a8fd706d4fb91940737b6642aa36998fe130a9bc96c985eff32", size = 952055, upload-time = "2026-03-19T14:22:25.026Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/64/b4/17d4b0b2a2dc85a6df63d1157e028ed19f90d4cd97c36717afef2bc2f395/attrs-26.1.0-py3-none-any.whl", hash = "sha256:c647aa4a12dfbad9333ca4e71fe62ddc36f4e63b2d260a37a8b83d2f043ac309", size = 67548, upload-time = "2026-03-19T14:22:23.645Z" },
+]
+
 [[package]]
 name = "certifi"
 version = "2026.2.25"
@@ -43,6 +64,47 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/9a/3c/c17fb3ca2d9c3acff52e30b309f538586f9f5b9c9cf454f3845fc9af4881/certifi-2026.2.25-py3-none-any.whl", hash = "sha256:027692e4402ad994f1c42e52a4997a9763c646b73e4096e4d5d6db8af1d6f0fa", size = 153684, upload-time = "2026-02-25T02:54:15.766Z" },
 ]
 
+[[package]]
+name = "charset-normalizer"
+version = "3.4.7"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/e7/a1/67fe25fac3c7642725500a3f6cfe5821ad557c3abb11c9d20d12c7008d3e/charset_normalizer-3.4.7.tar.gz", hash = "sha256:ae89db9e5f98a11a4bf50407d4363e7b09b31e55bc117b4f7d80aab97ba009e5", size = 144271, upload-time = "2026-04-02T09:28:39.342Z" }
+wheels = [
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