import datasets import csv class ppb_affinity(datasets.GeneratorBasedBuilder): VERSION = datasets.Version("1.0.0") BUILDER_CONFIGS = [ datasets.BuilderConfig(name="raw", description="Raw parsed PDBs dataset with critical filtrations only."), datasets.BuilderConfig(name="filtered", description="Raw dataset with additional cleaning and train/val/test splits."), ] def _info(self): return datasets.DatasetInfo() def _split_generators(self, dl_manager): if self.config.name == "raw": filepath = dl_manager.download_and_extract("raw.csv") return [datasets.SplitGenerator( name=datasets.Split.TRAIN, gen_kwargs={"filepath": filepath} )] else: filepath = dl_manager.download_and_extract("filtered.csv") return [ datasets.SplitGenerator( name=datasets.Split.TRAIN, gen_kwargs={"filepath": filepath, "split": "train"}, ), datasets.SplitGenerator( name=datasets.Split.VALIDATION, gen_kwargs={"filepath": filepath, "split": "val"}, ), datasets.SplitGenerator( name=datasets.Split.TEST, gen_kwargs={"filepath": filepath, "split": "test"}, ), ] def _generate_examples(self, filepath, split=None): with open(filepath, encoding="utf-8") as f: reader = csv.DictReader(f) for idx, row in enumerate(reader): if self.config.name == "raw": yield idx, row else: if row["split"] == split: del row["split"] # Remove split column from examples yield idx, row